Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618620 | XP_003629846.1 | 80.381 | 367 | 23 | 7 | 1 | 367 | 1 | 318 | 1.75e-171 | 493 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618620 | sp|Q8VZN1|OFP5_ARATH | 51.429 | 140 | 62 | 3 | 233 | 370 | 210 | 345 | 9.15e-36 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618620 | G7L799 | 80.381 | 367 | 23 | 7 | 1 | 367 | 1 | 318 | 8.36e-172 | 493 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0618620 | TF | OFP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0618620 | Msa0657520 | 0.837492 | 5.033858e-57 | -8.615850e-47 |
| Msa0618620 | Msa0701600 | 0.853636 | 2.096072e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618620 | MtrunA17_Chr8g0379681 | 80.381 | 367 | 23 | 7 | 1 | 367 | 1 | 318 | 1.61e-175 | 493 |
| Msa0618620 | MtrunA17_Chr2g0284471 | 47.257 | 237 | 95 | 6 | 150 | 367 | 82 | 307 | 1.40e-52 | 178 |
| Msa0618620 | MtrunA17_Chr8g0379691 | 94.231 | 52 | 3 | 0 | 366 | 417 | 14 | 65 | 3.75e-27 | 102 |
| Msa0618620 | MtrunA17_Chr5g0432531 | 41.481 | 135 | 58 | 5 | 234 | 366 | 130 | 245 | 2.40e-22 | 95.5 |
| Msa0618620 | MtrunA17_Chr7g0244571 | 63.333 | 60 | 22 | 0 | 307 | 366 | 281 | 340 | 4.79e-20 | 90.9 |
| Msa0618620 | MtrunA17_Chr4g0013081 | 62.712 | 59 | 22 | 0 | 308 | 366 | 315 | 373 | 8.30e-19 | 87.4 |
| Msa0618620 | MtrunA17_Chr8g0390531 | 56.667 | 60 | 26 | 0 | 307 | 366 | 258 | 317 | 3.02e-15 | 76.3 |
| Msa0618620 | MtrunA17_Chr1g0177881 | 50.769 | 65 | 32 | 0 | 305 | 369 | 100 | 164 | 2.68e-13 | 68.2 |
| Msa0618620 | MtrunA17_Chr4g0025901 | 43.939 | 66 | 37 | 0 | 306 | 371 | 98 | 163 | 1.66e-12 | 65.5 |
| Msa0618620 | MtrunA17_Chr5g0435131 | 42.254 | 71 | 41 | 0 | 306 | 376 | 90 | 160 | 5.09e-12 | 63.9 |
| Msa0618620 | MtrunA17_Chr7g0267111 | 46.667 | 60 | 32 | 0 | 310 | 369 | 113 | 172 | 5.38e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618620 | AT4G18830.1 | 51.429 | 140 | 62 | 3 | 233 | 370 | 210 | 345 | 9.30e-37 | 137 |
| Msa0618620 | AT5G58360.1 | 47.573 | 103 | 50 | 1 | 269 | 367 | 182 | 284 | 7.15e-22 | 95.5 |
| Msa0618620 | AT1G06920.1 | 56.716 | 67 | 29 | 0 | 301 | 367 | 237 | 303 | 2.02e-20 | 91.7 |
| Msa0618620 | AT2G30400.1 | 56.716 | 67 | 29 | 0 | 300 | 366 | 245 | 311 | 6.69e-19 | 87.4 |
| Msa0618620 | AT5G19650.1 | 55.172 | 58 | 26 | 0 | 307 | 364 | 154 | 211 | 6.79e-16 | 77.0 |
| Msa0618620 | AT5G01840.1 | 60.714 | 56 | 22 | 0 | 311 | 366 | 202 | 257 | 6.85e-16 | 77.8 |
| Msa0618620 | AT3G52525.1 | 50.794 | 63 | 31 | 0 | 302 | 364 | 61 | 123 | 6.14e-12 | 63.9 |
| Msa0618620 | AT2G18500.1 | 49.153 | 59 | 30 | 0 | 306 | 364 | 225 | 283 | 9.08e-12 | 66.2 |
Find 66 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGTTGTGAAGTGTTCTT+TGG | 0.266311 | 4_2:+69556622 | Msa0618620:CDS |
| GAGGGAAATAATTGGGTTCT+TGG | 0.266493 | 4_2:-69556299 | None:intergenic |
| AACAACTCTTCCATTTCTTC+TGG | 0.277466 | 4_2:-69556707 | None:intergenic |
| CTACATAAGAGGGAAATAAT+TGG | 0.293355 | 4_2:-69556307 | None:intergenic |
| ACATCCAAACTGTACATTAC+TGG | 0.306963 | 4_2:-69556053 | None:intergenic |
| TCGACTTCAGTAGCCATCTT+TGG | 0.314341 | 4_2:-69556494 | None:intergenic |
| GGGTTCTTGGTGATTCAAAT+TGG | 0.318117 | 4_2:-69556286 | None:intergenic |
| TTTCAAAGTGTCGGAGAAAA+TGG | 0.336592 | 4_2:+69556353 | Msa0618620:CDS |
| GAAGAAAGAAGAAGAGGAAA+TGG | 0.347901 | 4_2:+69556568 | Msa0618620:CDS |
| GATAAGCCAGCCAGAAGAAA+TGG | 0.364577 | 4_2:+69556697 | Msa0618620:CDS |
| TATGTAGATGCAGAAAGTTC+TGG | 0.372162 | 4_2:+69556323 | Msa0618620:CDS |
| CTTACCTTGGAACTCTGCTT+TGG | 0.374018 | 4_2:-69556461 | None:intergenic |
| AATGATATCATGGTATTCAT+TGG | 0.398859 | 4_2:-69556753 | None:intergenic |
| GTGGTGAGGATGATGCATTC+TGG | 0.406825 | 4_2:+69555967 | Msa0618620:CDS |
| GAAGCCAGTAATGTACAGTT+TGG | 0.411136 | 4_2:+69556049 | Msa0618620:CDS |
| ATTCAGCAATATAGTAGTAT+TGG | 0.419698 | 4_2:-69558695 | None:intergenic |
| GATGCAGAAAGTTCTGGTCT+TGG | 0.420949 | 4_2:+69556329 | Msa0618620:CDS |
| CAATTTCCTTGTGGGAATAG+AGG | 0.421459 | 4_2:+69555930 | Msa0618620:CDS |
| ACTTTCTGCATCTACATAAG+AGG | 0.429055 | 4_2:-69556318 | None:intergenic |
| GTTCATCACAATTTCCTTGT+GGG | 0.429553 | 4_2:+69555922 | Msa0618620:CDS |
| TGGAGAATGTACTCTTACCT+TGG | 0.430524 | 4_2:-69556474 | None:intergenic |
| ACTCTTCCATTTCTTCTGGC+TGG | 0.432481 | 4_2:-69556703 | None:intergenic |
| AGAGGATACATGAGAGATGA+AGG | 0.442815 | 4_2:-69555760 | None:intergenic |
| TACATAAGAGGGAAATAATT+GGG | 0.446625 | 4_2:-69556306 | None:intergenic |
| GAAAGAAGAAGAGGAAATGG+TGG | 0.463652 | 4_2:+69556571 | Msa0618620:CDS |
| GCATTCTGGAGATTGTCATT+TGG | 0.470215 | 4_2:+69555981 | Msa0618620:CDS |
| TTCCTTGTGGGAATAGAGGC+AGG | 0.471947 | 4_2:+69555934 | Msa0618620:CDS |
| AAAGATGAAGAAAGAAGAAG+AGG | 0.484787 | 4_2:+69556562 | Msa0618620:CDS |
| AGAAGAAGAGGAAATGGTGG+AGG | 0.494303 | 4_2:+69556574 | Msa0618620:CDS |
| TTAAAGCAAAGGTTAACAAA+AGG | 0.494673 | 4_2:+69556396 | Msa0618620:CDS |
| TAAATGTAAATCCTTAGAAA+AGG | 0.497808 | 4_2:+69556256 | Msa0618620:CDS |
| ATGCTTTGATAATGATATCA+TGG | 0.506592 | 4_2:-69556763 | None:intergenic |
| AAGAGTACATTCTCCAAAGA+TGG | 0.518216 | 4_2:+69556481 | Msa0618620:CDS |
| GAAGAAGCTGAAGCTGAAGA+AGG | 0.519649 | 4_2:-69555717 | None:intergenic |
| ATAGAGATTCAGTTCATCCT+AGG | 0.520159 | 4_2:+69558716 | Msa0618620:CDS |
| AAGCAAAGGTTAACAAAAGG+AGG | 0.522101 | 4_2:+69556399 | Msa0618620:CDS |
| CAAGAAATCAAACAATGAAG+TGG | 0.530510 | 4_2:+69555682 | None:intergenic |
| GGTCTTGGATTTCAAAGTGT+CGG | 0.531784 | 4_2:+69556344 | Msa0618620:CDS |
| ACTCAGAACTCCCCGTCTGA+TGG | 0.532872 | 4_2:+69555900 | Msa0618620:CDS |
| ATGGTGGAGGAAACAGAAGA+AGG | 0.542284 | 4_2:+69556587 | Msa0618620:CDS |
| CATTATCAAAGCATTTCGAC+AGG | 0.549940 | 4_2:+69556772 | Msa0618620:CDS |
| TGGTGGAGGAAACAGAAGAA+GGG | 0.553251 | 4_2:+69556588 | Msa0618620:CDS |
| AGTCGAAATACGCAAAATGA+AGG | 0.561509 | 4_2:+69556511 | Msa0618620:CDS |
| ATGTGAGGAGTTTAAAGCAA+AGG | 0.562245 | 4_2:+69556385 | Msa0618620:CDS |
| CTTTCTGCATCTACATAAGA+GGG | 0.562393 | 4_2:-69556317 | None:intergenic |
| GAATCTCTAAAATCTTGTTG+TGG | 0.573719 | 4_2:-69556647 | None:intergenic |
| AGGAAGTTGAGTGCTTAAAG+AGG | 0.596150 | 4_2:+69556144 | Msa0618620:CDS |
| GCTTAAAGAGGAGATATGAG+AGG | 0.596446 | 4_2:+69556156 | Msa0618620:CDS |
| GGTTCATCACAATTTCCTTG+TGG | 0.598854 | 4_2:+69555921 | Msa0618620:CDS |
| AATCAAACAATGAAGTGGAG+TGG | 0.599426 | 4_2:+69555687 | None:intergenic |
| AGCAAAGGTTAACAAAAGGA+GGG | 0.601137 | 4_2:+69556400 | Msa0618620:CDS |
| GATACATGAGAGATGAAGGA+AGG | 0.612433 | 4_2:-69555756 | None:intergenic |
| AATTGTGATGAACCATCAGA+CGG | 0.617022 | 4_2:-69555912 | None:intergenic |
| ATTGTGATGAACCATCAGAC+GGG | 0.626786 | 4_2:-69555911 | None:intergenic |
| GAAACCAAAGCAGAGTTCCA+AGG | 0.627313 | 4_2:+69556457 | Msa0618620:CDS |
| AGTTTGGATGTGAAAAGACA+TGG | 0.628614 | 4_2:+69556065 | Msa0618620:CDS |
| GAAATTACAGAATGCAGCAG+AGG | 0.634808 | 4_2:+69556211 | Msa0618620:CDS |
| TAATGAAACAAAGAGTGCAA+AGG | 0.636359 | 4_2:+69556124 | Msa0618620:CDS |
| TGTTGTCGTTGCATCAGACG+AGG | 0.644231 | 4_2:-69555862 | None:intergenic |
| ATCAGACGGGGAGTTCTGAG+TGG | 0.651626 | 4_2:-69555898 | None:intergenic |
| TGAGCAGAGAATTACAGAGG+AGG | 0.661098 | 4_2:+69556435 | Msa0618620:CDS |
| TCAGACGGGGAGTTCTGAGT+GGG | 0.663234 | 4_2:-69555897 | None:intergenic |
| AACCTGCCTCTATTCCCACA+AGG | 0.669707 | 4_2:-69555936 | None:intergenic |
| ATGTGAGCAGAGAATTACAG+AGG | 0.684434 | 4_2:+69556432 | Msa0618620:CDS |
| AAATGGTGTGAATCAATGTG+AGG | 0.711307 | 4_2:+69556370 | Msa0618620:CDS |
| TTGTGATGAACCATCAGACG+GGG | 0.714122 | 4_2:-69555910 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTAGTTATCAAATTTAT+TGG | - | chr4_2:69557358-69557377 | None:intergenic | 10.0% |
| !! | AAAAAGAAATTCAAAATTTA+AGG | + | chr4_2:69558080-69558099 | Msa0618620:intron | 10.0% |
| !! | ATAGTATATTTATTAATTGC+AGG | - | chr4_2:69557256-69557275 | None:intergenic | 15.0% |
| !!! | TAATATTGTTTTATGTAATC+AGG | - | chr4_2:69557421-69557440 | None:intergenic | 15.0% |
| !! | CTTATATACAAAAAAAAAAG+AGG | - | chr4_2:69557485-69557504 | None:intergenic | 15.0% |
| !! | ATATATCAATATATCATATC+AGG | + | chr4_2:69557782-69557801 | Msa0618620:intron | 15.0% |
| !! | TGTTTGATATTATAATAGTT+TGG | - | chr4_2:69557841-69557860 | None:intergenic | 15.0% |
| !! | ATAAAAACAATAAAAGCAAA+AGG | + | chr4_2:69557988-69558007 | Msa0618620:intron | 15.0% |
| !! | TTATGTCTTTATAGTTAAAT+AGG | - | chr4_2:69558328-69558347 | None:intergenic | 15.0% |
| !! | ATAAAGACATAAAACAAAAA+TGG | + | chr4_2:69558336-69558355 | Msa0618620:intron | 15.0% |
| !!! | TATCTTTACTTTTCTTCTTT+TGG | - | chr4_2:69556025-69556044 | None:intergenic | 20.0% |
| !! | TAAATGTAAATCCTTAGAAA+AGG | + | chr4_2:69556256-69556275 | Msa0618620:CDS | 20.0% |
| !! | ATTTATTACACAAACTTGAA+TGG | - | chr4_2:69556814-69556833 | None:intergenic | 20.0% |
| !! | ATAAATTACAGATTAGAACT+TGG | - | chr4_2:69556903-69556922 | None:intergenic | 20.0% |
| !! | ATGTATTTACTCTTACTATT+AGG | - | chr4_2:69557225-69557244 | None:intergenic | 20.0% |
| !! | TCCAAAAAAAAAACTATGTA+TGG | + | chr4_2:69557283-69557302 | Msa0618620:intron | 20.0% |
| !! | TAATGACATAATCTACAATA+TGG | + | chr4_2:69557307-69557326 | Msa0618620:intron | 20.0% |
| !! | AATGACATAATCTACAATAT+GGG | + | chr4_2:69557308-69557327 | Msa0618620:intron | 20.0% |
| !! | ATAAACAGTAATACATCAAT+GGG | - | chr4_2:69558500-69558519 | None:intergenic | 20.0% |
| !! | TATAAACAGTAATACATCAA+TGG | - | chr4_2:69558501-69558520 | None:intergenic | 20.0% |
| ! | TACATAAGAGGGAAATAATT+GGG | - | chr4_2:69556309-69556328 | None:intergenic | 25.0% |
| ! | TTAAAGCAAAGGTTAACAAA+AGG | + | chr4_2:69556396-69556415 | Msa0618620:CDS | 25.0% |
| ! | AATGATATCATGGTATTCAT+TGG | - | chr4_2:69556756-69556775 | None:intergenic | 25.0% |
| !!! | ATGCTTTGATAATGATATCA+TGG | - | chr4_2:69556766-69556785 | None:intergenic | 25.0% |
| ! | CAACTATTTACAATTCTAAC+AGG | - | chr4_2:69556872-69556891 | None:intergenic | 25.0% |
| ! | TATAATTATTCTTCAGCAGT+AGG | + | chr4_2:69557057-69557076 | Msa0618620:intron | 25.0% |
| !! | AATAAAAAAGTCTAAAGCAC+CGG | + | chr4_2:69557082-69557101 | Msa0618620:intron | 25.0% |
| ! | ATTTACTCTTACTATTAGGA+GGG | - | chr4_2:69557221-69557240 | None:intergenic | 25.0% |
| ! | TATTTACTCTTACTATTAGG+AGG | - | chr4_2:69557222-69557241 | None:intergenic | 25.0% |
| !!! | GCCATACATAGTTTTTTTTT+TGG | - | chr4_2:69557287-69557306 | None:intergenic | 25.0% |
| ! | CAAATCAAAGACATCTATTA+TGG | - | chr4_2:69557573-69557592 | None:intergenic | 25.0% |
| ! | TATCTTAAATGTCAACAAAG+AGG | + | chr4_2:69557601-69557620 | Msa0618620:intron | 25.0% |
| ! | ATTCACATCATGTGAAATTT+AGG | - | chr4_2:69557874-69557893 | None:intergenic | 25.0% |
| ! | AATAAGCAGTTTACATCTAA+TGG | + | chr4_2:69557917-69557936 | Msa0618620:intron | 25.0% |
| !! | GTTTACATCTAATGGATAAA+AGG | + | chr4_2:69557925-69557944 | Msa0618620:intron | 25.0% |
| ! | ATGTTGAGAAGACTATAAAA+AGG | + | chr4_2:69558020-69558039 | Msa0618620:intron | 25.0% |
| ! | TTTGACATAATGAGTATGAT+AGG | - | chr4_2:69558148-69558167 | None:intergenic | 25.0% |
| ! | GGCTAATTTCTATTTATTTC+TGG | - | chr4_2:69558214-69558233 | None:intergenic | 25.0% |
| ! | TTCCATTGCTGTAAAAAAAA+AGG | - | chr4_2:69558255-69558274 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTACAGCAATGGA+AGG | + | chr4_2:69558254-69558273 | Msa0618620:intron | 25.0% |
| ! | TAGTTAAATAGGTCTAAACT+TGG | - | chr4_2:69558317-69558336 | None:intergenic | 25.0% |
| ! | AATATAAAATCTCCACTTTG+AGG | + | chr4_2:69558428-69558447 | Msa0618620:intron | 25.0% |
| ! | ATTCAGCAATATAGTAGTAT+TGG | - | chr4_2:69558698-69558717 | None:intergenic | 25.0% |
| ! | TAATGAAACAAAGAGTGCAA+AGG | + | chr4_2:69556124-69556143 | Msa0618620:CDS | 30.0% |
| CTACATAAGAGGGAAATAAT+TGG | - | chr4_2:69556310-69556329 | None:intergenic | 30.0% | |
| AAAGATGAAGAAAGAAGAAG+AGG | + | chr4_2:69556562-69556581 | Msa0618620:CDS | 30.0% | |
| !! | GAATCTCTAAAATCTTGTTG+TGG | - | chr4_2:69556650-69556669 | None:intergenic | 30.0% |
| AGTTCTTTGTGTATGCAAAT+CGG | + | chr4_2:69556965-69556984 | Msa0618620:intron | 30.0% | |
| !!! | TTCTACTTTTGGAATCTCAT+TGG | - | chr4_2:69557121-69557140 | None:intergenic | 30.0% |
| TCCAAAAGTAGAAACAGTTT+AGG | + | chr4_2:69557128-69557147 | Msa0618620:intron | 30.0% | |
| !!! | TCCTAAACTGTTTCTACTTT+TGG | - | chr4_2:69557132-69557151 | None:intergenic | 30.0% |
| GCATATTACTACAATTACAG+TGG | + | chr4_2:69557164-69557183 | Msa0618620:intron | 30.0% | |
| ! | TGTTTTATGTAATCAGGTGA+CGG | - | chr4_2:69557415-69557434 | None:intergenic | 30.0% |
| AAGACATCTATTATGGTGAT+AGG | - | chr4_2:69557566-69557585 | None:intergenic | 30.0% | |
| !!! | TTTTGACTTCACTATTTGAG+AGG | + | chr4_2:69557703-69557722 | Msa0618620:intron | 30.0% |
| TATCATATCAGGCATCTATA+AGG | + | chr4_2:69557793-69557812 | Msa0618620:intron | 30.0% | |
| CTGGAAATATTATCTAGTCA+TGG | - | chr4_2:69558195-69558214 | None:intergenic | 30.0% | |
| !!! | TGCCTTTTTTTTTACAGCAA+TGG | + | chr4_2:69558250-69558269 | Msa0618620:intron | 30.0% |
| GAATATAAAAGTCCTCAAAG+TGG | - | chr4_2:69558443-69558462 | None:intergenic | 30.0% | |
| TCTCAAAAGTTACAAGAATG+GGG | - | chr4_2:69558540-69558559 | None:intergenic | 30.0% | |
| GTCTCAAAAGTTACAAGAAT+GGG | - | chr4_2:69558541-69558560 | None:intergenic | 30.0% | |
| AGTCTCAAAAGTTACAAGAA+TGG | - | chr4_2:69558542-69558561 | None:intergenic | 30.0% | |
| ! | AAATGAATTTTCCTGCTGAA+AGG | + | chr4_2:69558587-69558606 | Msa0618620:intron | 30.0% |
| !!! | CTGTTTTTGGAACTGATTTT+GGG | - | chr4_2:69558749-69558768 | None:intergenic | 30.0% |
| ! | CTACTTCATATTCCTGTTTT+TGG | - | chr4_2:69558762-69558781 | None:intergenic | 30.0% |
| !! | CTCATGTATCCTCTTTTTCA+TGG | + | chr4_2:69555769-69555788 | Msa0618620:CDS | 35.0% |
| AATTGTGATGAACCATCAGA+CGG | - | chr4_2:69555915-69555934 | None:intergenic | 35.0% | |
| GTTCATCACAATTTCCTTGT+GGG | + | chr4_2:69555922-69555941 | Msa0618620:CDS | 35.0% | |
| ACATCCAAACTGTACATTAC+TGG | - | chr4_2:69556056-69556075 | None:intergenic | 35.0% | |
| AGTTTGGATGTGAAAAGACA+TGG | + | chr4_2:69556065-69556084 | Msa0618620:CDS | 35.0% | |
| CTTTCTGCATCTACATAAGA+GGG | - | chr4_2:69556320-69556339 | None:intergenic | 35.0% | |
| ACTTTCTGCATCTACATAAG+AGG | - | chr4_2:69556321-69556340 | None:intergenic | 35.0% | |
| TATGTAGATGCAGAAAGTTC+TGG | + | chr4_2:69556323-69556342 | Msa0618620:CDS | 35.0% | |
| !! | TTTCAAAGTGTCGGAGAAAA+TGG | + | chr4_2:69556353-69556372 | Msa0618620:CDS | 35.0% |
| AAATGGTGTGAATCAATGTG+AGG | + | chr4_2:69556370-69556389 | Msa0618620:CDS | 35.0% | |
| ! | ATGTGAGGAGTTTAAAGCAA+AGG | + | chr4_2:69556385-69556404 | Msa0618620:CDS | 35.0% |
| AAGCAAAGGTTAACAAAAGG+AGG | + | chr4_2:69556399-69556418 | Msa0618620:CDS | 35.0% | |
| AGCAAAGGTTAACAAAAGGA+GGG | + | chr4_2:69556400-69556419 | Msa0618620:CDS | 35.0% | |
| ! | AAGAGTACATTCTCCAAAGA+TGG | + | chr4_2:69556481-69556500 | Msa0618620:CDS | 35.0% |
| AGTCGAAATACGCAAAATGA+AGG | + | chr4_2:69556511-69556530 | Msa0618620:CDS | 35.0% | |
| GAAGAAAGAAGAAGAGGAAA+TGG | + | chr4_2:69556568-69556587 | Msa0618620:CDS | 35.0% | |
| AACAACTCTTCCATTTCTTC+TGG | - | chr4_2:69556710-69556729 | None:intergenic | 35.0% | |
| ! | CATTATCAAAGCATTTCGAC+AGG | + | chr4_2:69556772-69556791 | Msa0618620:CDS | 35.0% |
| TGCAAAGTCTATGAAGAGAA+TGG | - | chr4_2:69556937-69556956 | None:intergenic | 35.0% | |
| TACTACAATTACAGTGGTCT+TGG | + | chr4_2:69557170-69557189 | Msa0618620:intron | 35.0% | |
| ! | AATTACAGTGGTCTTGGATA+AGG | + | chr4_2:69557176-69557195 | Msa0618620:intron | 35.0% |
| TGGGACAATTAGTATACTGA+AGG | + | chr4_2:69557327-69557346 | Msa0618620:intron | 35.0% | |
| GGGACAATTAGTATACTGAA+GGG | + | chr4_2:69557328-69557347 | Msa0618620:intron | 35.0% | |
| ! | GTTTTATGTAATCAGGTGAC+GGG | - | chr4_2:69557414-69557433 | None:intergenic | 35.0% |
| AAAGAGGTAACACCAGTTAT+GGG | - | chr4_2:69557469-69557488 | None:intergenic | 35.0% | |
| AAAAGAGGTAACACCAGTTA+TGG | - | chr4_2:69557470-69557489 | None:intergenic | 35.0% | |
| AAAATGCCTATGAGAGCTTA+TGG | + | chr4_2:69557524-69557543 | Msa0618620:intron | 35.0% | |
| CACATCATGTGAAATTTAGG+TGG | - | chr4_2:69557871-69557890 | None:intergenic | 35.0% | |
| ATAAAAAGGTCCAAGTCTTG+TGG | + | chr4_2:69558034-69558053 | Msa0618620:intron | 35.0% | |
| TGAAATCTTACCACAAGACT+TGG | - | chr4_2:69558047-69558066 | None:intergenic | 35.0% | |
| AAACTTGGATTGCCTTTAGA+AGG | - | chr4_2:69558302-69558321 | None:intergenic | 35.0% | |
| TAAGTGCAAAAAAGGTGACA+AGG | + | chr4_2:69558384-69558403 | Msa0618620:intron | 35.0% | |
| AAGTGCAAAAAAGGTGACAA+GGG | + | chr4_2:69558385-69558404 | Msa0618620:intron | 35.0% | |
| ACAAGGGGAAAGGTTTAATT+TGG | + | chr4_2:69558401-69558420 | Msa0618620:intron | 35.0% | |
| ! | TTTTCCTGCTGAAAGGAATT+TGG | + | chr4_2:69558594-69558613 | Msa0618620:intron | 35.0% |
| ! | TTTTCCAAATTCCTTTCAGC+AGG | - | chr4_2:69558601-69558620 | None:intergenic | 35.0% |
| ATAGAGATTCAGTTCATCCT+AGG | + | chr4_2:69558716-69558735 | Msa0618620:CDS | 35.0% | |
| !! | TGATTTTGGGAATCATTCCT+AGG | - | chr4_2:69558736-69558755 | None:intergenic | 35.0% |
| !!! | CCTGTTTTTGGAACTGATTT+TGG | - | chr4_2:69558750-69558769 | None:intergenic | 35.0% |
| CCAAAATCAGTTCCAAAAAC+AGG | + | chr4_2:69558747-69558766 | Msa0618620:CDS | 35.0% | |
| GATACATGAGAGATGAAGGA+AGG | - | chr4_2:69555759-69555778 | None:intergenic | 40.0% | |
| AGAGGATACATGAGAGATGA+AGG | - | chr4_2:69555763-69555782 | None:intergenic | 40.0% | |
| CTTTGACAGCCATGAAAAAG+AGG | - | chr4_2:69555781-69555800 | None:intergenic | 40.0% | |
| ATTGTGATGAACCATCAGAC+GGG | - | chr4_2:69555914-69555933 | None:intergenic | 40.0% | |
| GGTTCATCACAATTTCCTTG+TGG | + | chr4_2:69555921-69555940 | Msa0618620:CDS | 40.0% | |
| CAATTTCCTTGTGGGAATAG+AGG | + | chr4_2:69555930-69555949 | Msa0618620:CDS | 40.0% | |
| !! | AATAGAGGCAGGTTTTATGG+AGG | + | chr4_2:69555945-69555964 | Msa0618620:CDS | 40.0% |
| ! | GCATTCTGGAGATTGTCATT+TGG | + | chr4_2:69555981-69556000 | Msa0618620:CDS | 40.0% |
| GAAGCCAGTAATGTACAGTT+TGG | + | chr4_2:69556049-69556068 | Msa0618620:CDS | 40.0% | |
| AGGAAGTTGAGTGCTTAAAG+AGG | + | chr4_2:69556144-69556163 | Msa0618620:CDS | 40.0% | |
| GCTTAAAGAGGAGATATGAG+AGG | + | chr4_2:69556156-69556175 | Msa0618620:CDS | 40.0% | |
| GAAATTACAGAATGCAGCAG+AGG | + | chr4_2:69556211-69556230 | Msa0618620:CDS | 40.0% | |
| ! | TTGGAGCTCATCCTTTTCTA+AGG | - | chr4_2:69556270-69556289 | None:intergenic | 40.0% |
| ! | GGGTTCTTGGTGATTCAAAT+TGG | - | chr4_2:69556289-69556308 | None:intergenic | 40.0% |
| GAGGGAAATAATTGGGTTCT+TGG | - | chr4_2:69556302-69556321 | None:intergenic | 40.0% | |
| GGTCTTGGATTTCAAAGTGT+CGG | + | chr4_2:69556344-69556363 | Msa0618620:CDS | 40.0% | |
| ATGTGAGCAGAGAATTACAG+AGG | + | chr4_2:69556432-69556451 | Msa0618620:CDS | 40.0% | |
| TGGAGAATGTACTCTTACCT+TGG | - | chr4_2:69556477-69556496 | None:intergenic | 40.0% | |
| GAAAGAAGAAGAGGAAATGG+TGG | + | chr4_2:69556571-69556590 | Msa0618620:CDS | 40.0% | |
| ! | TGCAGTTGTGAAGTGTTCTT+TGG | + | chr4_2:69556622-69556641 | Msa0618620:CDS | 40.0% |
| ! | TCAAAGCATTTCGACAGGTA+TGG | + | chr4_2:69556777-69556796 | Msa0618620:intron | 40.0% |
| !! | CATTGGCTTTCTCTTCTTAC+CGG | - | chr4_2:69557104-69557123 | None:intergenic | 40.0% |
| ACTATTAGGAGGGTTGGAAA+TGG | - | chr4_2:69557211-69557230 | None:intergenic | 40.0% | |
| ACTCTTACTATTAGGAGGGT+TGG | - | chr4_2:69557217-69557236 | None:intergenic | 40.0% | |
| CGTCTGCAAGAATAGGATAA+AGG | - | chr4_2:69557386-69557405 | None:intergenic | 40.0% | |
| CAAGTCACTGTCTAACTACT+TGG | + | chr4_2:69557638-69557657 | Msa0618620:intron | 40.0% | |
| CTTGGCAATAGCATACCAAA+TGG | + | chr4_2:69557656-69557675 | Msa0618620:intron | 40.0% | |
| ACCAAATGGAACAACTCTTG+TGG | + | chr4_2:69557670-69557689 | Msa0618620:intron | 40.0% | |
| ACCACAAGAGTTGTTCCATT+TGG | - | chr4_2:69557674-69557693 | None:intergenic | 40.0% | |
| AATGGAACAACTCTTGTGGT+TGG | + | chr4_2:69557674-69557693 | Msa0618620:intron | 40.0% | |
| ! | AAAATCTGCTATGACTTGGC+TGG | - | chr4_2:69557959-69557978 | None:intergenic | 40.0% |
| ! | AGCCAAGTCATAGCAGATTT+TGG | + | chr4_2:69557958-69557977 | Msa0618620:intron | 40.0% |
| CACCAAAATCTGCTATGACT+TGG | - | chr4_2:69557963-69557982 | None:intergenic | 40.0% | |
| AGGCATGATTGAGTTAAGCA+TGG | - | chr4_2:69558235-69558254 | None:intergenic | 40.0% | |
| GTGATCATCTCACAGTTGTT+AGG | + | chr4_2:69558276-69558295 | Msa0618620:intron | 40.0% | |
| ACAGTTGTTAGGCCTTCTAA+AGG | + | chr4_2:69558287-69558306 | Msa0618620:intron | 40.0% | |
| CTGCTGAAACATTCATGAGT+GGG | + | chr4_2:69558361-69558380 | Msa0618620:intron | 40.0% | |
| TGAGTGGGTAAGTGCAAAAA+AGG | + | chr4_2:69558376-69558395 | Msa0618620:intron | 40.0% | |
| AGTGCAAAAAAGGTGACAAG+GGG | + | chr4_2:69558386-69558405 | Msa0618620:intron | 40.0% | |
| AAAAAAGGTGACAAGGGGAA+AGG | + | chr4_2:69558391-69558410 | Msa0618620:intron | 40.0% | |
| TCTATTTGCATGAGGGTCTA+GGG | - | chr4_2:69558474-69558493 | None:intergenic | 40.0% | |
| TGGGTAGTCTATTTGCATGA+GGG | - | chr4_2:69558481-69558500 | None:intergenic | 40.0% | |
| ATGGGTAGTCTATTTGCATG+AGG | - | chr4_2:69558482-69558501 | None:intergenic | 40.0% | |
| GAAGAAGCTGAAGCTGAAGA+AGG | - | chr4_2:69555720-69555739 | None:intergenic | 45.0% | |
| ! | GGAGTTCTGCATCAGCTTTT+CGG | - | chr4_2:69555844-69555863 | None:intergenic | 45.0% |
| TTGTGATGAACCATCAGACG+GGG | - | chr4_2:69555913-69555932 | None:intergenic | 45.0% | |
| ! | GGGAATAGAGGCAGGTTTTA+TGG | + | chr4_2:69555942-69555961 | Msa0618620:CDS | 45.0% |
| ! | GATGCAGAAAGTTCTGGTCT+TGG | + | chr4_2:69556329-69556348 | Msa0618620:CDS | 45.0% |
| TGAGCAGAGAATTACAGAGG+AGG | + | chr4_2:69556435-69556454 | Msa0618620:CDS | 45.0% | |
| GAAACCAAAGCAGAGTTCCA+AGG | + | chr4_2:69556457-69556476 | Msa0618620:CDS | 45.0% | |
| CTTACCTTGGAACTCTGCTT+TGG | - | chr4_2:69556464-69556483 | None:intergenic | 45.0% | |
| TCGACTTCAGTAGCCATCTT+TGG | - | chr4_2:69556497-69556516 | None:intergenic | 45.0% | |
| AGAAGAAGAGGAAATGGTGG+AGG | + | chr4_2:69556574-69556593 | Msa0618620:CDS | 45.0% | |
| ! | ATGGTGGAGGAAACAGAAGA+AGG | + | chr4_2:69556587-69556606 | Msa0618620:CDS | 45.0% |
| TGGTGGAGGAAACAGAAGAA+GGG | + | chr4_2:69556588-69556607 | Msa0618620:CDS | 45.0% | |
| GATAAGCCAGCCAGAAGAAA+TGG | + | chr4_2:69556697-69556716 | Msa0618620:CDS | 45.0% | |
| ACTCTTCCATTTCTTCTGGC+TGG | - | chr4_2:69556706-69556725 | None:intergenic | 45.0% | |
| TAGGAGGGTTGGAAATGGTA+GGG | - | chr4_2:69557206-69557225 | None:intergenic | 45.0% | |
| TTAGGAGGGTTGGAAATGGT+AGG | - | chr4_2:69557207-69557226 | None:intergenic | 45.0% | |
| TGGGTCAGTCATGTTCTCTT+AGG | - | chr4_2:69557450-69557469 | None:intergenic | 45.0% | |
| GAACATGACTGACCCATAAC+TGG | + | chr4_2:69557454-69557473 | Msa0618620:intron | 45.0% | |
| ATGCCTATGAGAGCTTATGG+TGG | + | chr4_2:69557527-69557546 | Msa0618620:intron | 45.0% | |
| TGCCTATGAGAGCTTATGGT+GGG | + | chr4_2:69557528-69557547 | Msa0618620:intron | 45.0% | |
| ATCCCACCATAAGCTCTCAT+AGG | - | chr4_2:69557533-69557552 | None:intergenic | 45.0% | |
| GCTGCTGAAACATTCATGAG+TGG | + | chr4_2:69558360-69558379 | Msa0618620:intron | 45.0% | |
| GTCTATTTGCATGAGGGTCT+AGG | - | chr4_2:69558475-69558494 | None:intergenic | 45.0% | |
| TGTTGTCGTTGCATCAGACG+AGG | - | chr4_2:69555865-69555884 | None:intergenic | 50.0% | |
| TTCCTTGTGGGAATAGAGGC+AGG | + | chr4_2:69555934-69555953 | Msa0618620:CDS | 50.0% | |
| AACCTGCCTCTATTCCCACA+AGG | - | chr4_2:69555939-69555958 | None:intergenic | 50.0% | |
| !! | AGAGGCAGGTTTTATGGAGG+TGG | + | chr4_2:69555948-69555967 | Msa0618620:CDS | 50.0% |
| !! | CAGGTTTTATGGAGGTGGTG+AGG | + | chr4_2:69555953-69555972 | Msa0618620:CDS | 50.0% |
| GTGGTGAGGATGATGCATTC+TGG | + | chr4_2:69555967-69555986 | Msa0618620:CDS | 50.0% | |
| GGTCTTGCGTCTGCAAGAAT+AGG | - | chr4_2:69557393-69557412 | None:intergenic | 50.0% | |
| !! | TCAGACGGGGAGTTCTGAGT+GGG | - | chr4_2:69555900-69555919 | None:intergenic | 55.0% |
| !! | ATCAGACGGGGAGTTCTGAG+TGG | - | chr4_2:69555901-69555920 | None:intergenic | 55.0% |
| ACTCAGAACTCCCCGTCTGA+TGG | + | chr4_2:69555900-69555919 | Msa0618620:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 69555696 | 69558786 | 69555696 | ID=Msa0618620;Name=Msa0618620 |
| chr4_2 | mRNA | 69555696 | 69558786 | 69555696 | ID=Msa0618620-mRNA-1;Parent=Msa0618620;Name=Msa0618620-mRNA-1;_AED=0.10;_eAED=0.15;_QI=0|0|0|1|1|1|2|0|417 |
| chr4_2 | exon | 69555696 | 69556793 | 69555696 | ID=Msa0618620-mRNA-1:exon:20115;Parent=Msa0618620-mRNA-1 |
| chr4_2 | exon | 69558631 | 69558786 | 69558631 | ID=Msa0618620-mRNA-1:exon:20116;Parent=Msa0618620-mRNA-1 |
| chr4_2 | CDS | 69555696 | 69556793 | 69555696 | ID=Msa0618620-mRNA-1:cds;Parent=Msa0618620-mRNA-1 |
| chr4_2 | CDS | 69558631 | 69558786 | 69558631 | ID=Msa0618620-mRNA-1:cds;Parent=Msa0618620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
