Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657520 | XP_003629846.1 | 80.654 | 367 | 22 | 7 | 1 | 367 | 1 | 318 | 6.68e-172 | 494 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657520 | sp|Q8VZN1|OFP5_ARATH | 52.143 | 140 | 61 | 3 | 233 | 370 | 210 | 345 | 2.20e-36 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657520 | G7L799 | 80.654 | 367 | 22 | 7 | 1 | 367 | 1 | 318 | 3.19e-172 | 494 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0657520 | TF | OFP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0618620 | Msa0657520 | 0.837492 | 5.033858e-57 | -8.615850e-47 |
| Msa0657520 | Msa0701600 | 0.950829 | 7.316665e-109 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657520 | MtrunA17_Chr8g0379681 | 80.654 | 367 | 22 | 7 | 1 | 367 | 1 | 318 | 6.15e-176 | 494 |
| Msa0657520 | MtrunA17_Chr2g0284471 | 47.257 | 237 | 95 | 5 | 150 | 367 | 82 | 307 | 4.15e-53 | 180 |
| Msa0657520 | MtrunA17_Chr8g0379691 | 92.308 | 52 | 4 | 0 | 366 | 417 | 14 | 65 | 1.23e-26 | 101 |
| Msa0657520 | MtrunA17_Chr5g0432531 | 43.284 | 134 | 57 | 5 | 234 | 366 | 130 | 245 | 1.08e-22 | 96.7 |
| Msa0657520 | MtrunA17_Chr7g0244571 | 63.333 | 60 | 22 | 0 | 307 | 366 | 281 | 340 | 4.79e-20 | 90.9 |
| Msa0657520 | MtrunA17_Chr4g0013081 | 62.712 | 59 | 22 | 0 | 308 | 366 | 315 | 373 | 8.38e-19 | 87.4 |
| Msa0657520 | MtrunA17_Chr8g0390531 | 56.667 | 60 | 26 | 0 | 307 | 366 | 258 | 317 | 2.83e-15 | 76.3 |
| Msa0657520 | MtrunA17_Chr1g0177881 | 50.769 | 65 | 32 | 0 | 305 | 369 | 100 | 164 | 2.43e-13 | 68.2 |
| Msa0657520 | MtrunA17_Chr4g0025901 | 43.939 | 66 | 37 | 0 | 306 | 371 | 98 | 163 | 1.54e-12 | 65.9 |
| Msa0657520 | MtrunA17_Chr5g0435131 | 42.254 | 71 | 41 | 0 | 306 | 376 | 90 | 160 | 4.71e-12 | 63.9 |
| Msa0657520 | MtrunA17_Chr7g0267111 | 46.667 | 60 | 32 | 0 | 310 | 369 | 113 | 172 | 5.54e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657520 | AT4G18830.1 | 52.143 | 140 | 61 | 3 | 233 | 370 | 210 | 345 | 2.23e-37 | 139 |
| Msa0657520 | AT5G58360.1 | 47.573 | 103 | 50 | 1 | 269 | 367 | 182 | 284 | 1.08e-21 | 95.1 |
| Msa0657520 | AT1G06920.1 | 56.716 | 67 | 29 | 0 | 301 | 367 | 237 | 303 | 2.21e-20 | 91.7 |
| Msa0657520 | AT2G30400.1 | 56.716 | 67 | 29 | 0 | 300 | 366 | 245 | 311 | 7.87e-19 | 87.0 |
| Msa0657520 | AT5G01840.1 | 60.714 | 56 | 22 | 0 | 311 | 366 | 202 | 257 | 7.25e-16 | 77.8 |
| Msa0657520 | AT5G19650.1 | 55.172 | 58 | 26 | 0 | 307 | 364 | 154 | 211 | 7.40e-16 | 76.6 |
| Msa0657520 | AT3G52525.1 | 50.794 | 63 | 31 | 0 | 302 | 364 | 61 | 123 | 5.85e-12 | 63.9 |
| Msa0657520 | AT2G18500.1 | 49.153 | 59 | 30 | 0 | 306 | 364 | 225 | 283 | 8.52e-12 | 66.2 |
Find 69 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGTTGTGAAGTGTTCTT+TGG | 0.266311 | 4_3:-67200890 | Msa0657520:CDS |
| GAGGGAAATAATTGGGTTCT+TGG | 0.266493 | 4_3:+67201213 | None:intergenic |
| AACAACTCTTCCATTTCTTC+TGG | 0.277466 | 4_3:+67200805 | None:intergenic |
| CTACATAAGAGGGAAATAAT+TGG | 0.293355 | 4_3:+67201205 | None:intergenic |
| ACATCCAAACTGTACATTAC+TGG | 0.306963 | 4_3:+67201459 | None:intergenic |
| GGGTTCTTGGTGATTCAAAT+TGG | 0.318117 | 4_3:+67201226 | None:intergenic |
| GATTAGTATGCTGATTAATA+TGG | 0.320141 | 4_3:-67198855 | Msa0657520:CDS |
| TCGACTTTAGTAGCCATCTT+TGG | 0.329186 | 4_3:+67201018 | None:intergenic |
| TTTCAAAGTGTCGGAGAAAA+TGG | 0.336592 | 4_3:-67201159 | Msa0657520:CDS |
| GAAGAAAGAAGAAGAGGAAA+TGG | 0.347901 | 4_3:-67200944 | Msa0657520:CDS |
| GATAAGCCAGCCAGAAGAAA+TGG | 0.364577 | 4_3:-67200815 | Msa0657520:CDS |
| TATGTAGATGCAGAAAGTTC+TGG | 0.372162 | 4_3:-67201189 | Msa0657520:CDS |
| CTTACCTTGGAACTCTGCTT+TGG | 0.374018 | 4_3:+67201051 | None:intergenic |
| AATGATATCATGGTATTCAT+TGG | 0.398859 | 4_3:+67200759 | None:intergenic |
| GTGGTGAGGATGATGCATTC+TGG | 0.406825 | 4_3:-67201545 | Msa0657520:CDS |
| GAAGCCAGTAATGTACAGTT+TGG | 0.411136 | 4_3:-67201463 | Msa0657520:CDS |
| ATTCAGCAATATAGTAGTAT+TGG | 0.419698 | 4_3:+67198817 | None:intergenic |
| GATGCAGAAAGTTCTGGTCT+TGG | 0.420949 | 4_3:-67201183 | Msa0657520:CDS |
| CAATTTCCTTGTGGGAATAG+AGG | 0.421459 | 4_3:-67201582 | Msa0657520:CDS |
| ACTTTCTGCATCTACATAAG+AGG | 0.429055 | 4_3:+67201194 | None:intergenic |
| GTTCATCACAATTTCCTTGT+GGG | 0.429553 | 4_3:-67201590 | Msa0657520:CDS |
| TGGAGAATGTACTCTTACCT+TGG | 0.430524 | 4_3:+67201038 | None:intergenic |
| ACTCTTCCATTTCTTCTGGC+TGG | 0.432481 | 4_3:+67200809 | None:intergenic |
| AGAGGATACATGAGAGATGA+AGG | 0.442815 | 4_3:+67201752 | None:intergenic |
| TACATAAGAGGGAAATAATT+GGG | 0.446625 | 4_3:+67201206 | None:intergenic |
| GAAAGAAGAAGAGGAAATGG+TGG | 0.463652 | 4_3:-67200941 | Msa0657520:CDS |
| GCATTCTGGAGATTGTCATT+TGG | 0.470215 | 4_3:-67201531 | Msa0657520:CDS |
| TTCCTTGTGGGAATAGAGGC+AGG | 0.471947 | 4_3:-67201578 | Msa0657520:CDS |
| AAAGATGAAGAAAGAAGAAG+AGG | 0.484787 | 4_3:-67200950 | Msa0657520:CDS |
| ATTGTTGTCGTTGCATCAGA+CGG | 0.491811 | 4_3:+67201648 | None:intergenic |
| TTGTTGTCGTTGCATCAGAC+GGG | 0.493988 | 4_3:+67201649 | None:intergenic |
| AGAAGAAGAGGAAATGGTGG+AGG | 0.494303 | 4_3:-67200938 | Msa0657520:CDS |
| TTAAAGCAAAGGTTAACAAA+AGG | 0.494673 | 4_3:-67201116 | Msa0657520:CDS |
| TAAATGTAAATCCTTAGAAA+AGG | 0.497808 | 4_3:-67201256 | Msa0657520:CDS |
| ATGCTTTGATAATGATATCA+TGG | 0.506592 | 4_3:+67200749 | None:intergenic |
| AAGAGTACATTCTCCAAAGA+TGG | 0.518216 | 4_3:-67201031 | Msa0657520:CDS |
| GAAGAAGCTGAAGCTGAAGA+AGG | 0.519649 | 4_3:+67201795 | None:intergenic |
| ATAGAGATTCAGTTCATCCT+AGG | 0.520159 | 4_3:-67198796 | Msa0657520:CDS |
| AAGCAAAGGTTAACAAAAGG+AGG | 0.522101 | 4_3:-67201113 | Msa0657520:CDS |
| CAAGAAATCAAACAATGAAG+TGG | 0.530510 | 4_3:-67201830 | None:intergenic |
| GGTCTTGGATTTCAAAGTGT+CGG | 0.531784 | 4_3:-67201168 | Msa0657520:CDS |
| ACTCAGAACTCCCCGTCTGA+TGG | 0.532872 | 4_3:-67201612 | Msa0657520:CDS |
| AGTCGAAATACGCAAAATGA+AGG | 0.533126 | 4_3:-67201001 | Msa0657520:CDS |
| ATGGTGGAGGAAACAGAAGA+AGG | 0.542284 | 4_3:-67200925 | Msa0657520:CDS |
| CATTATCAAAGCATTTCGAC+AGG | 0.549940 | 4_3:-67200740 | Msa0657520:intron |
| TGGTGGAGGAAACAGAAGAA+GGG | 0.553251 | 4_3:-67200924 | Msa0657520:CDS |
| ATGTGAGGAGTTTAAAGCAA+AGG | 0.562245 | 4_3:-67201127 | Msa0657520:CDS |
| CTTTCTGCATCTACATAAGA+GGG | 0.562393 | 4_3:+67201195 | None:intergenic |
| GAATCTCTAAAATCTTGTTG+TGG | 0.573719 | 4_3:+67200865 | None:intergenic |
| AGGAAGTTGAGTGCTTAAAG+AGG | 0.596150 | 4_3:-67201368 | Msa0657520:CDS |
| GCTTAAAGAGGAGATATGAG+AGG | 0.596446 | 4_3:-67201356 | Msa0657520:CDS |
| GGTTCATCACAATTTCCTTG+TGG | 0.598854 | 4_3:-67201591 | Msa0657520:CDS |
| AATCAAACAATGAAGTGGAG+TGG | 0.599426 | 4_3:-67201825 | None:intergenic |
| AGCAAAGGTTAACAAAAGGA+GGG | 0.601137 | 4_3:-67201112 | Msa0657520:CDS |
| GATACATGAGAGATGAAGGA+AGG | 0.612433 | 4_3:+67201756 | None:intergenic |
| AATTGTGATGAACCATCAGA+CGG | 0.617022 | 4_3:+67201600 | None:intergenic |
| ATTGTGATGAACCATCAGAC+GGG | 0.626786 | 4_3:+67201601 | None:intergenic |
| GAAACCAAAGCAGAGTTCCA+AGG | 0.627313 | 4_3:-67201055 | Msa0657520:CDS |
| AGTTTGGATGTGAAAAGACA+TGG | 0.628614 | 4_3:-67201447 | Msa0657520:CDS |
| GAAATTACAGAATGCAGCAG+AGG | 0.634808 | 4_3:-67201301 | Msa0657520:CDS |
| TAATGAAACAAAGAGTGCAA+AGG | 0.636359 | 4_3:-67201388 | Msa0657520:CDS |
| TGTTGTCGTTGCATCAGACG+GGG | 0.638223 | 4_3:+67201650 | None:intergenic |
| ATCAGACGGGGAGTTCTGAG+TGG | 0.651626 | 4_3:+67201614 | None:intergenic |
| TGAGCAGAGAATTACAGAGG+AGG | 0.661098 | 4_3:-67201077 | Msa0657520:CDS |
| TCAGACGGGGAGTTCTGAGT+GGG | 0.663234 | 4_3:+67201615 | None:intergenic |
| AACCTGCCTCTATTCCCACA+AGG | 0.669707 | 4_3:+67201576 | None:intergenic |
| ATGTGAGCAGAGAATTACAG+AGG | 0.684434 | 4_3:-67201080 | Msa0657520:CDS |
| AAATGGTGTGAATCAATGTG+AGG | 0.711307 | 4_3:-67201142 | Msa0657520:CDS |
| TTGTGATGAACCATCAGACG+GGG | 0.714122 | 4_3:+67201602 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTAGTTATCAAATTTAT+TGG | + | chr4_3:67200410-67200429 | None:intergenic | 10.0% |
| !! | AAAAAGAAATTCAAAATTTA+AGG | - | chr4_3:67201132-67201151 | Msa0657520:CDS | 10.0% |
| !! | ATAGTATATTTATTAATTGC+AGG | + | chr4_3:67200308-67200327 | None:intergenic | 15.0% |
| !!! | TAATATTGTTTTATGTAATC+AGG | + | chr4_3:67200473-67200492 | None:intergenic | 15.0% |
| !! | CTTATATACAAAAAAAAAAG+AGG | + | chr4_3:67200537-67200556 | None:intergenic | 15.0% |
| !! | ATATATCAATATATCATATC+AGG | - | chr4_3:67200834-67200853 | Msa0657520:CDS | 15.0% |
| !! | TGTTTGATATTATAATAGTT+TGG | + | chr4_3:67200893-67200912 | None:intergenic | 15.0% |
| !! | ATAAAAACAATAAAAGCAAA+AGG | - | chr4_3:67201040-67201059 | Msa0657520:CDS | 15.0% |
| !! | TTATGTCTTTATAGTTAAAT+AGG | + | chr4_3:67201380-67201399 | None:intergenic | 15.0% |
| !! | ATAAAGACATAAAACAAAAA+TGG | - | chr4_3:67201388-67201407 | Msa0657520:CDS | 15.0% |
| !!! | TATCTTTACTTTTCTTCTTT+TGG | + | chr4_3:67199077-67199096 | None:intergenic | 20.0% |
| !! | TAAATGTAAATCCTTAGAAA+AGG | - | chr4_3:67199308-67199327 | Msa0657520:intron | 20.0% |
| !! | ATTTATTACACAAACTTGAA+TGG | + | chr4_3:67199866-67199885 | None:intergenic | 20.0% |
| !! | ATAAATTACAGATTAGAACT+TGG | + | chr4_3:67199955-67199974 | None:intergenic | 20.0% |
| !! | ATGTATTTACTCTTACTATT+AGG | + | chr4_3:67200277-67200296 | None:intergenic | 20.0% |
| !! | TCCAAAAAAAAAACTATGTA+TGG | - | chr4_3:67200335-67200354 | Msa0657520:intron | 20.0% |
| !! | TAATGACATAATCTACAATA+TGG | - | chr4_3:67200359-67200378 | Msa0657520:intron | 20.0% |
| !! | AATGACATAATCTACAATAT+GGG | - | chr4_3:67200360-67200379 | Msa0657520:intron | 20.0% |
| !! | ATAAACAGTAATACATCAAT+GGG | + | chr4_3:67201552-67201571 | None:intergenic | 20.0% |
| !! | TATAAACAGTAATACATCAA+TGG | + | chr4_3:67201553-67201572 | None:intergenic | 20.0% |
| ! | TACATAAGAGGGAAATAATT+GGG | + | chr4_3:67199361-67199380 | None:intergenic | 25.0% |
| ! | TTAAAGCAAAGGTTAACAAA+AGG | - | chr4_3:67199448-67199467 | Msa0657520:intron | 25.0% |
| ! | AATGATATCATGGTATTCAT+TGG | + | chr4_3:67199808-67199827 | None:intergenic | 25.0% |
| !!! | ATGCTTTGATAATGATATCA+TGG | + | chr4_3:67199818-67199837 | None:intergenic | 25.0% |
| ! | TATAATTATTCTTCAGCAGT+AGG | - | chr4_3:67200109-67200128 | Msa0657520:intron | 25.0% |
| !! | AATAAAAAAGTCTAAAGCAC+CGG | - | chr4_3:67200134-67200153 | Msa0657520:intron | 25.0% |
| ! | ATTTACTCTTACTATTAGGA+GGG | + | chr4_3:67200273-67200292 | None:intergenic | 25.0% |
| ! | TATTTACTCTTACTATTAGG+AGG | + | chr4_3:67200274-67200293 | None:intergenic | 25.0% |
| !!! | GCCATACATAGTTTTTTTTT+TGG | + | chr4_3:67200339-67200358 | None:intergenic | 25.0% |
| ! | CAAATCAAAGACATCTATTA+TGG | + | chr4_3:67200625-67200644 | None:intergenic | 25.0% |
| ! | TATCTTAAATGTCAACAAAG+AGG | - | chr4_3:67200653-67200672 | Msa0657520:intron | 25.0% |
| ! | ATTCACATCATGTGAAATTT+AGG | + | chr4_3:67200926-67200945 | None:intergenic | 25.0% |
| ! | AATAAGCAGTTTACATCTAA+TGG | - | chr4_3:67200969-67200988 | Msa0657520:CDS | 25.0% |
| !! | GTTTACATCTAATGGATAAA+AGG | - | chr4_3:67200977-67200996 | Msa0657520:CDS | 25.0% |
| ! | ATGTTGAGAAGACTATAAAA+AGG | - | chr4_3:67201072-67201091 | Msa0657520:CDS | 25.0% |
| ! | TTTGACATAATGAGTATGAT+AGG | + | chr4_3:67201200-67201219 | None:intergenic | 25.0% |
| ! | GGCTAATTTCTATTTATTTC+TGG | + | chr4_3:67201266-67201285 | None:intergenic | 25.0% |
| ! | TTCCATTGCTGTAAAAAAAA+AGG | + | chr4_3:67201307-67201326 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTACAGCAATGGA+AGG | - | chr4_3:67201306-67201325 | Msa0657520:CDS | 25.0% |
| ! | TAGTTAAATAGGTCTAAACT+TGG | + | chr4_3:67201369-67201388 | None:intergenic | 25.0% |
| ! | AATATAAAATCTCCACTTTG+AGG | - | chr4_3:67201480-67201499 | Msa0657520:CDS | 25.0% |
| !! | GATTAGTATGCTGATTAATA+TGG | - | chr4_3:67201709-67201728 | Msa0657520:CDS | 25.0% |
| ! | ATTCAGCAATATAGTAGTAT+TGG | + | chr4_3:67201750-67201769 | None:intergenic | 25.0% |
| ! | TAATGAAACAAAGAGTGCAA+AGG | - | chr4_3:67199176-67199195 | Msa0657520:intron | 30.0% |
| CTACATAAGAGGGAAATAAT+TGG | + | chr4_3:67199362-67199381 | None:intergenic | 30.0% | |
| AAAGATGAAGAAAGAAGAAG+AGG | - | chr4_3:67199614-67199633 | Msa0657520:intron | 30.0% | |
| !! | GAATCTCTAAAATCTTGTTG+TGG | + | chr4_3:67199702-67199721 | None:intergenic | 30.0% |
| CGACTATTTACAATTCTAAC+AGG | + | chr4_3:67199924-67199943 | None:intergenic | 30.0% | |
| AGTTCTTTGTGTATGCAAAT+CGG | - | chr4_3:67200017-67200036 | Msa0657520:intron | 30.0% | |
| !!! | TTCTACTTTTGGAATCTCAT+TGG | + | chr4_3:67200173-67200192 | None:intergenic | 30.0% |
| TCCAAAAGTAGAAACAGTTT+AGG | - | chr4_3:67200180-67200199 | Msa0657520:intron | 30.0% | |
| !!! | TCCTAAACTGTTTCTACTTT+TGG | + | chr4_3:67200184-67200203 | None:intergenic | 30.0% |
| GCATATTACTACAATTACAG+TGG | - | chr4_3:67200216-67200235 | Msa0657520:intron | 30.0% | |
| ! | TGTTTTATGTAATCAGGTGA+CGG | + | chr4_3:67200467-67200486 | None:intergenic | 30.0% |
| AAGACATCTATTATGGTGAT+AGG | + | chr4_3:67200618-67200637 | None:intergenic | 30.0% | |
| !!! | TTTTGACTTCACTATTTGAG+AGG | - | chr4_3:67200755-67200774 | Msa0657520:CDS | 30.0% |
| TATCATATCAGGCATCTATA+AGG | - | chr4_3:67200845-67200864 | Msa0657520:CDS | 30.0% | |
| CTGGAAATATTATCTAGTCA+TGG | + | chr4_3:67201247-67201266 | None:intergenic | 30.0% | |
| !!! | TGCCTTTTTTTTTACAGCAA+TGG | - | chr4_3:67201302-67201321 | Msa0657520:CDS | 30.0% |
| GAATATAAAAGTCCTCAAAG+TGG | + | chr4_3:67201495-67201514 | None:intergenic | 30.0% | |
| TCTCAAAAGTTACAAGAATG+GGG | + | chr4_3:67201592-67201611 | None:intergenic | 30.0% | |
| GTCTCAAAAGTTACAAGAAT+GGG | + | chr4_3:67201593-67201612 | None:intergenic | 30.0% | |
| AGTCTCAAAAGTTACAAGAA+TGG | + | chr4_3:67201594-67201613 | None:intergenic | 30.0% | |
| ! | AAATGAATTTTCCTGCTGAA+AGG | - | chr4_3:67201639-67201658 | Msa0657520:CDS | 30.0% |
| !!! | CTGTTTTTGGAACTGATTTT+GGG | + | chr4_3:67201801-67201820 | None:intergenic | 30.0% |
| ! | CTACTTCATATTCCTGTTTT+TGG | + | chr4_3:67201814-67201833 | None:intergenic | 30.0% |
| !! | CTCATGTATCCTCTTTTTCA+TGG | - | chr4_3:67198821-67198840 | Msa0657520:CDS | 35.0% |
| AATTGTGATGAACCATCAGA+CGG | + | chr4_3:67198967-67198986 | None:intergenic | 35.0% | |
| GTTCATCACAATTTCCTTGT+GGG | - | chr4_3:67198974-67198993 | Msa0657520:intron | 35.0% | |
| ACATCCAAACTGTACATTAC+TGG | + | chr4_3:67199108-67199127 | None:intergenic | 35.0% | |
| AGTTTGGATGTGAAAAGACA+TGG | - | chr4_3:67199117-67199136 | Msa0657520:intron | 35.0% | |
| CTTTCTGCATCTACATAAGA+GGG | + | chr4_3:67199372-67199391 | None:intergenic | 35.0% | |
| ACTTTCTGCATCTACATAAG+AGG | + | chr4_3:67199373-67199392 | None:intergenic | 35.0% | |
| TATGTAGATGCAGAAAGTTC+TGG | - | chr4_3:67199375-67199394 | Msa0657520:intron | 35.0% | |
| !! | TTTCAAAGTGTCGGAGAAAA+TGG | - | chr4_3:67199405-67199424 | Msa0657520:intron | 35.0% |
| AAATGGTGTGAATCAATGTG+AGG | - | chr4_3:67199422-67199441 | Msa0657520:intron | 35.0% | |
| ! | ATGTGAGGAGTTTAAAGCAA+AGG | - | chr4_3:67199437-67199456 | Msa0657520:intron | 35.0% |
| AAGCAAAGGTTAACAAAAGG+AGG | - | chr4_3:67199451-67199470 | Msa0657520:intron | 35.0% | |
| AGCAAAGGTTAACAAAAGGA+GGG | - | chr4_3:67199452-67199471 | Msa0657520:intron | 35.0% | |
| ! | AAGAGTACATTCTCCAAAGA+TGG | - | chr4_3:67199533-67199552 | Msa0657520:intron | 35.0% |
| AGTCGAAATACGCAAAATGA+AGG | - | chr4_3:67199563-67199582 | Msa0657520:intron | 35.0% | |
| GAAGAAAGAAGAAGAGGAAA+TGG | - | chr4_3:67199620-67199639 | Msa0657520:intron | 35.0% | |
| AACAACTCTTCCATTTCTTC+TGG | + | chr4_3:67199762-67199781 | None:intergenic | 35.0% | |
| ! | CATTATCAAAGCATTTCGAC+AGG | - | chr4_3:67199824-67199843 | Msa0657520:intron | 35.0% |
| TACTACAATTACAGTGGTCT+TGG | - | chr4_3:67200222-67200241 | Msa0657520:intron | 35.0% | |
| ! | AATTACAGTGGTCTTGGATA+AGG | - | chr4_3:67200228-67200247 | Msa0657520:intron | 35.0% |
| TGGGACAATTAGTATACTGA+AGG | - | chr4_3:67200379-67200398 | Msa0657520:intron | 35.0% | |
| GGGACAATTAGTATACTGAA+GGG | - | chr4_3:67200380-67200399 | Msa0657520:intron | 35.0% | |
| ! | GTTTTATGTAATCAGGTGAC+GGG | + | chr4_3:67200466-67200485 | None:intergenic | 35.0% |
| AAAGAGGTAACACCAGTTAT+GGG | + | chr4_3:67200521-67200540 | None:intergenic | 35.0% | |
| AAAAGAGGTAACACCAGTTA+TGG | + | chr4_3:67200522-67200541 | None:intergenic | 35.0% | |
| AAAATGCCTATGAGAGCTTA+TGG | - | chr4_3:67200576-67200595 | Msa0657520:intron | 35.0% | |
| CACATCATGTGAAATTTAGG+TGG | + | chr4_3:67200923-67200942 | None:intergenic | 35.0% | |
| ATAAAAAGGTCCAAGTCTTG+TGG | - | chr4_3:67201086-67201105 | Msa0657520:CDS | 35.0% | |
| TGAAATCTTACCACAAGACT+TGG | + | chr4_3:67201099-67201118 | None:intergenic | 35.0% | |
| AAACTTGGATTGCCTTTAGA+AGG | + | chr4_3:67201354-67201373 | None:intergenic | 35.0% | |
| TAAGTGCAAAAAAGGTGACA+AGG | - | chr4_3:67201436-67201455 | Msa0657520:CDS | 35.0% | |
| AAGTGCAAAAAAGGTGACAA+GGG | - | chr4_3:67201437-67201456 | Msa0657520:CDS | 35.0% | |
| ACAAGGGGAAAGGTTTAATT+TGG | - | chr4_3:67201453-67201472 | Msa0657520:CDS | 35.0% | |
| ! | TTTTCCTGCTGAAAGGAATT+TGG | - | chr4_3:67201646-67201665 | Msa0657520:CDS | 35.0% |
| ! | TTTTCCAAATTCCTTTCAGC+AGG | + | chr4_3:67201653-67201672 | None:intergenic | 35.0% |
| ATAGAGATTCAGTTCATCCT+AGG | - | chr4_3:67201768-67201787 | Msa0657520:CDS | 35.0% | |
| !! | TGATTTTGGGAATCATTCCT+AGG | + | chr4_3:67201788-67201807 | None:intergenic | 35.0% |
| !!! | CCTGTTTTTGGAACTGATTT+TGG | + | chr4_3:67201802-67201821 | None:intergenic | 35.0% |
| CCAAAATCAGTTCCAAAAAC+AGG | - | chr4_3:67201799-67201818 | Msa0657520:CDS | 35.0% | |
| GATACATGAGAGATGAAGGA+AGG | + | chr4_3:67198811-67198830 | None:intergenic | 40.0% | |
| AGAGGATACATGAGAGATGA+AGG | + | chr4_3:67198815-67198834 | None:intergenic | 40.0% | |
| CTTTGACAGCCATGAAAAAG+AGG | + | chr4_3:67198833-67198852 | None:intergenic | 40.0% | |
| ATTGTTGTCGTTGCATCAGA+CGG | + | chr4_3:67198919-67198938 | None:intergenic | 40.0% | |
| ATTGTGATGAACCATCAGAC+GGG | + | chr4_3:67198966-67198985 | None:intergenic | 40.0% | |
| GGTTCATCACAATTTCCTTG+TGG | - | chr4_3:67198973-67198992 | Msa0657520:intron | 40.0% | |
| CAATTTCCTTGTGGGAATAG+AGG | - | chr4_3:67198982-67199001 | Msa0657520:intron | 40.0% | |
| !! | AATAGAGGCAGGTTTTATGG+AGG | - | chr4_3:67198997-67199016 | Msa0657520:intron | 40.0% |
| ! | GCATTCTGGAGATTGTCATT+TGG | - | chr4_3:67199033-67199052 | Msa0657520:intron | 40.0% |
| GAAGCCAGTAATGTACAGTT+TGG | - | chr4_3:67199101-67199120 | Msa0657520:intron | 40.0% | |
| AGGAAGTTGAGTGCTTAAAG+AGG | - | chr4_3:67199196-67199215 | Msa0657520:intron | 40.0% | |
| GCTTAAAGAGGAGATATGAG+AGG | - | chr4_3:67199208-67199227 | Msa0657520:intron | 40.0% | |
| GAAATTACAGAATGCAGCAG+AGG | - | chr4_3:67199263-67199282 | Msa0657520:intron | 40.0% | |
| ! | TTGGAGCTCATCCTTTTCTA+AGG | + | chr4_3:67199322-67199341 | None:intergenic | 40.0% |
| ! | GGGTTCTTGGTGATTCAAAT+TGG | + | chr4_3:67199341-67199360 | None:intergenic | 40.0% |
| GAGGGAAATAATTGGGTTCT+TGG | + | chr4_3:67199354-67199373 | None:intergenic | 40.0% | |
| GGTCTTGGATTTCAAAGTGT+CGG | - | chr4_3:67199396-67199415 | Msa0657520:intron | 40.0% | |
| ATGTGAGCAGAGAATTACAG+AGG | - | chr4_3:67199484-67199503 | Msa0657520:intron | 40.0% | |
| TGGAGAATGTACTCTTACCT+TGG | + | chr4_3:67199529-67199548 | None:intergenic | 40.0% | |
| TCGACTTTAGTAGCCATCTT+TGG | + | chr4_3:67199549-67199568 | None:intergenic | 40.0% | |
| GAAAGAAGAAGAGGAAATGG+TGG | - | chr4_3:67199623-67199642 | Msa0657520:intron | 40.0% | |
| ! | TGCAGTTGTGAAGTGTTCTT+TGG | - | chr4_3:67199674-67199693 | Msa0657520:intron | 40.0% |
| ! | TCAAAGCATTTCGACAGGTA+TGG | - | chr4_3:67199829-67199848 | Msa0657520:intron | 40.0% |
| !! | CATTGGCTTTCTCTTCTTAC+CGG | + | chr4_3:67200156-67200175 | None:intergenic | 40.0% |
| ACTATTAGGAGGGTTGGAAA+TGG | + | chr4_3:67200263-67200282 | None:intergenic | 40.0% | |
| ACTCTTACTATTAGGAGGGT+TGG | + | chr4_3:67200269-67200288 | None:intergenic | 40.0% | |
| CGTCTGCAAGAATAGGATAA+AGG | + | chr4_3:67200438-67200457 | None:intergenic | 40.0% | |
| CAAGTCACTGTCTAACTACT+TGG | - | chr4_3:67200690-67200709 | Msa0657520:intron | 40.0% | |
| CTTGGCAATAGCATACCAAA+TGG | - | chr4_3:67200708-67200727 | Msa0657520:intron | 40.0% | |
| ACCAAATGGAACAACTCTTG+TGG | - | chr4_3:67200722-67200741 | Msa0657520:intron | 40.0% | |
| ACCACAAGAGTTGTTCCATT+TGG | + | chr4_3:67200726-67200745 | None:intergenic | 40.0% | |
| AATGGAACAACTCTTGTGGT+TGG | - | chr4_3:67200726-67200745 | Msa0657520:intron | 40.0% | |
| ! | AAAATCTGCTATGACTTGGC+TGG | + | chr4_3:67201011-67201030 | None:intergenic | 40.0% |
| ! | AGCCAAGTCATAGCAGATTT+TGG | - | chr4_3:67201010-67201029 | Msa0657520:CDS | 40.0% |
| CACCAAAATCTGCTATGACT+TGG | + | chr4_3:67201015-67201034 | None:intergenic | 40.0% | |
| AGGCATGATTGAGTTAAGCA+TGG | + | chr4_3:67201287-67201306 | None:intergenic | 40.0% | |
| GTGATCATCTCACAGTTGTT+AGG | - | chr4_3:67201328-67201347 | Msa0657520:CDS | 40.0% | |
| ACAGTTGTTAGGCCTTCTAA+AGG | - | chr4_3:67201339-67201358 | Msa0657520:CDS | 40.0% | |
| CTGCTGAAACATTCATGAGT+GGG | - | chr4_3:67201413-67201432 | Msa0657520:CDS | 40.0% | |
| TGAGTGGGTAAGTGCAAAAA+AGG | - | chr4_3:67201428-67201447 | Msa0657520:CDS | 40.0% | |
| AGTGCAAAAAAGGTGACAAG+GGG | - | chr4_3:67201438-67201457 | Msa0657520:CDS | 40.0% | |
| AAAAAAGGTGACAAGGGGAA+AGG | - | chr4_3:67201443-67201462 | Msa0657520:CDS | 40.0% | |
| TCTATTTGCATGAGGGTCTA+GGG | + | chr4_3:67201526-67201545 | None:intergenic | 40.0% | |
| TGGGTAGTCTATTTGCATGA+GGG | + | chr4_3:67201533-67201552 | None:intergenic | 40.0% | |
| ATGGGTAGTCTATTTGCATG+AGG | + | chr4_3:67201534-67201553 | None:intergenic | 40.0% | |
| GAAGAAGCTGAAGCTGAAGA+AGG | + | chr4_3:67198772-67198791 | None:intergenic | 45.0% | |
| ! | GGAGTTCTGCATCAGCTTTT+CGG | + | chr4_3:67198896-67198915 | None:intergenic | 45.0% |
| TTGTTGTCGTTGCATCAGAC+GGG | + | chr4_3:67198918-67198937 | None:intergenic | 45.0% | |
| TTGTGATGAACCATCAGACG+GGG | + | chr4_3:67198965-67198984 | None:intergenic | 45.0% | |
| ! | GGGAATAGAGGCAGGTTTTA+TGG | - | chr4_3:67198994-67199013 | Msa0657520:intron | 45.0% |
| ! | GATGCAGAAAGTTCTGGTCT+TGG | - | chr4_3:67199381-67199400 | Msa0657520:intron | 45.0% |
| TGAGCAGAGAATTACAGAGG+AGG | - | chr4_3:67199487-67199506 | Msa0657520:intron | 45.0% | |
| GAAACCAAAGCAGAGTTCCA+AGG | - | chr4_3:67199509-67199528 | Msa0657520:intron | 45.0% | |
| CTTACCTTGGAACTCTGCTT+TGG | + | chr4_3:67199516-67199535 | None:intergenic | 45.0% | |
| AGAAGAAGAGGAAATGGTGG+AGG | - | chr4_3:67199626-67199645 | Msa0657520:intron | 45.0% | |
| ! | ATGGTGGAGGAAACAGAAGA+AGG | - | chr4_3:67199639-67199658 | Msa0657520:intron | 45.0% |
| TGGTGGAGGAAACAGAAGAA+GGG | - | chr4_3:67199640-67199659 | Msa0657520:intron | 45.0% | |
| GATAAGCCAGCCAGAAGAAA+TGG | - | chr4_3:67199749-67199768 | Msa0657520:intron | 45.0% | |
| ACTCTTCCATTTCTTCTGGC+TGG | + | chr4_3:67199758-67199777 | None:intergenic | 45.0% | |
| TAGGAGGGTTGGAAATGGTA+GGG | + | chr4_3:67200258-67200277 | None:intergenic | 45.0% | |
| TTAGGAGGGTTGGAAATGGT+AGG | + | chr4_3:67200259-67200278 | None:intergenic | 45.0% | |
| TGGGTCAGTCATGTTCTCTT+AGG | + | chr4_3:67200502-67200521 | None:intergenic | 45.0% | |
| GAACATGACTGACCCATAAC+TGG | - | chr4_3:67200506-67200525 | Msa0657520:intron | 45.0% | |
| ATGCCTATGAGAGCTTATGG+TGG | - | chr4_3:67200579-67200598 | Msa0657520:intron | 45.0% | |
| TGCCTATGAGAGCTTATGGT+GGG | - | chr4_3:67200580-67200599 | Msa0657520:intron | 45.0% | |
| ATCCCACCATAAGCTCTCAT+AGG | + | chr4_3:67200585-67200604 | None:intergenic | 45.0% | |
| GCTGCTGAAACATTCATGAG+TGG | - | chr4_3:67201412-67201431 | Msa0657520:CDS | 45.0% | |
| GTCTATTTGCATGAGGGTCT+AGG | + | chr4_3:67201527-67201546 | None:intergenic | 45.0% | |
| TGTTGTCGTTGCATCAGACG+GGG | + | chr4_3:67198917-67198936 | None:intergenic | 50.0% | |
| TTCCTTGTGGGAATAGAGGC+AGG | - | chr4_3:67198986-67199005 | Msa0657520:intron | 50.0% | |
| AACCTGCCTCTATTCCCACA+AGG | + | chr4_3:67198991-67199010 | None:intergenic | 50.0% | |
| !! | AGAGGCAGGTTTTATGGAGG+TGG | - | chr4_3:67199000-67199019 | Msa0657520:intron | 50.0% |
| !! | CAGGTTTTATGGAGGTGGTG+AGG | - | chr4_3:67199005-67199024 | Msa0657520:intron | 50.0% |
| GTGGTGAGGATGATGCATTC+TGG | - | chr4_3:67199019-67199038 | Msa0657520:intron | 50.0% | |
| GGTCTTGCGTCTGCAAGAAT+AGG | + | chr4_3:67200445-67200464 | None:intergenic | 50.0% | |
| !! | TCAGACGGGGAGTTCTGAGT+GGG | + | chr4_3:67198952-67198971 | None:intergenic | 55.0% |
| !! | ATCAGACGGGGAGTTCTGAG+TGG | + | chr4_3:67198953-67198972 | None:intergenic | 55.0% |
| ACTCAGAACTCCCCGTCTGA+TGG | - | chr4_3:67198952-67198971 | Msa0657520:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 67198748 | 67201838 | 67198748 | ID=Msa0657520;Name=Msa0657520 |
| chr4_3 | mRNA | 67198748 | 67201838 | 67198748 | ID=Msa0657520-mRNA-1;Parent=Msa0657520;Name=Msa0657520-mRNA-1;_AED=0.10;_eAED=0.12;_QI=0|0|0|1|1|1|2|0|417 |
| chr4_3 | exon | 67200741 | 67201838 | 67200741 | ID=Msa0657520-mRNA-1:exon:19351;Parent=Msa0657520-mRNA-1 |
| chr4_3 | exon | 67198748 | 67198903 | 67198748 | ID=Msa0657520-mRNA-1:exon:19350;Parent=Msa0657520-mRNA-1 |
| chr4_3 | CDS | 67200741 | 67201838 | 67200741 | ID=Msa0657520-mRNA-1:cds;Parent=Msa0657520-mRNA-1 |
| chr4_3 | CDS | 67198748 | 67198903 | 67198748 | ID=Msa0657520-mRNA-1:cds;Parent=Msa0657520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
