Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701600 | XP_003629846.1 | 80.926 | 367 | 21 | 7 | 1 | 367 | 1 | 318 | 8.69e-172 | 494 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701600 | sp|Q8VZN1|OFP5_ARATH | 52.143 | 140 | 61 | 3 | 233 | 370 | 210 | 345 | 2.31e-36 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701600 | G7L799 | 80.926 | 367 | 21 | 7 | 1 | 367 | 1 | 318 | 4.15e-172 | 494 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0701600 | TF | OFP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0618620 | Msa0701600 | 0.853636 | 2.096072e-61 | -8.615850e-47 |
| Msa0657520 | Msa0701600 | 0.950829 | 7.316665e-109 | -8.615850e-47 |
| Msa0557400 | Msa0701600 | 0.837173 | 6.076786e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701600 | MtrunA17_Chr8g0379681 | 80.926 | 367 | 21 | 7 | 1 | 367 | 1 | 318 | 7.99e-176 | 494 |
| Msa0701600 | MtrunA17_Chr2g0284471 | 47.257 | 237 | 95 | 5 | 150 | 367 | 82 | 307 | 6.26e-53 | 179 |
| Msa0701600 | MtrunA17_Chr8g0379691 | 94.231 | 52 | 3 | 0 | 366 | 417 | 14 | 65 | 4.16e-27 | 102 |
| Msa0701600 | MtrunA17_Chr5g0432531 | 42.222 | 135 | 57 | 5 | 234 | 366 | 130 | 245 | 1.20e-22 | 96.3 |
| Msa0701600 | MtrunA17_Chr7g0244571 | 63.333 | 60 | 22 | 0 | 307 | 366 | 281 | 340 | 5.03e-20 | 90.9 |
| Msa0701600 | MtrunA17_Chr4g0013081 | 62.712 | 59 | 22 | 0 | 308 | 366 | 315 | 373 | 8.62e-19 | 87.4 |
| Msa0701600 | MtrunA17_Chr8g0390531 | 56.667 | 60 | 26 | 0 | 307 | 366 | 258 | 317 | 2.94e-15 | 76.3 |
| Msa0701600 | MtrunA17_Chr1g0177881 | 50.769 | 65 | 32 | 0 | 305 | 369 | 100 | 164 | 2.43e-13 | 68.2 |
| Msa0701600 | MtrunA17_Chr4g0025901 | 43.939 | 66 | 37 | 0 | 306 | 371 | 98 | 163 | 1.55e-12 | 65.9 |
| Msa0701600 | MtrunA17_Chr5g0435131 | 39.241 | 79 | 48 | 0 | 298 | 376 | 82 | 160 | 3.30e-12 | 64.7 |
| Msa0701600 | MtrunA17_Chr7g0267111 | 38.961 | 77 | 47 | 0 | 293 | 369 | 96 | 172 | 4.45e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701600 | AT4G18830.1 | 52.143 | 140 | 61 | 3 | 233 | 370 | 210 | 345 | 2.35e-37 | 139 |
| Msa0701600 | AT5G58360.1 | 47.573 | 103 | 50 | 1 | 269 | 367 | 182 | 284 | 2.24e-21 | 94.0 |
| Msa0701600 | AT1G06920.1 | 56.716 | 67 | 29 | 0 | 301 | 367 | 237 | 303 | 2.23e-20 | 91.7 |
| Msa0701600 | AT2G30400.1 | 56.716 | 67 | 29 | 0 | 300 | 366 | 245 | 311 | 7.65e-19 | 87.4 |
| Msa0701600 | AT5G01840.1 | 60.714 | 56 | 22 | 0 | 311 | 366 | 202 | 257 | 7.19e-16 | 77.8 |
| Msa0701600 | AT5G19650.1 | 55.172 | 58 | 26 | 0 | 307 | 364 | 154 | 211 | 7.55e-16 | 76.6 |
| Msa0701600 | AT3G52525.1 | 50.794 | 63 | 31 | 0 | 302 | 364 | 61 | 123 | 5.69e-12 | 63.9 |
| Msa0701600 | AT2G18500.1 | 49.153 | 59 | 30 | 0 | 306 | 364 | 225 | 283 | 8.36e-12 | 66.2 |
Find 67 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGTTGTGAAGTGTTCTT+TGG | 0.266311 | 4_4:+73037165 | Msa0701600:CDS |
| GAGGGAAATAATTGGGTTCT+TGG | 0.266493 | 4_4:-73036842 | None:intergenic |
| AACAACTCTTCCATTTCTTC+TGG | 0.277466 | 4_4:-73037250 | None:intergenic |
| CTACATAAGAGGGAAATAAT+TGG | 0.293355 | 4_4:-73036850 | None:intergenic |
| ACATCCAAACTGTACATTAC+TGG | 0.306963 | 4_4:-73036596 | None:intergenic |
| GGGTTCTTGGTGATTCAAAT+TGG | 0.318117 | 4_4:-73036829 | None:intergenic |
| TCGACTTTAGTAGCCATCTT+TGG | 0.329186 | 4_4:-73037037 | None:intergenic |
| TTTCAAAGTGTCGGAGAAAA+TGG | 0.336592 | 4_4:+73036896 | Msa0701600:CDS |
| GATAAGCCAGCCAGAAGAAA+TGG | 0.364577 | 4_4:+73037240 | Msa0701600:CDS |
| TATGTAGATGCAGAAAGTTC+TGG | 0.372162 | 4_4:+73036866 | Msa0701600:CDS |
| CTTACCTTGGAACTCTGCTT+TGG | 0.374018 | 4_4:-73037004 | None:intergenic |
| AATGATATCATGGTATTCAT+TGG | 0.398859 | 4_4:-73037296 | None:intergenic |
| GTGGTGAGGATGATGCATTC+TGG | 0.406825 | 4_4:+73036510 | Msa0701600:CDS |
| GAAGCCAGTAATGTACAGTT+TGG | 0.411136 | 4_4:+73036592 | Msa0701600:CDS |
| ATTCAGCAATATAGTAGTAT+TGG | 0.419698 | 4_4:-73039238 | None:intergenic |
| GATGCAGAAAGTTCTGGTCT+TGG | 0.420949 | 4_4:+73036872 | Msa0701600:CDS |
| CAATTTCCTTGTGGGAATAG+AGG | 0.421459 | 4_4:+73036473 | Msa0701600:CDS |
| ACTTTCTGCATCTACATAAG+AGG | 0.429055 | 4_4:-73036861 | None:intergenic |
| GTTCATCACAATTTCCTTGT+GGG | 0.429553 | 4_4:+73036465 | Msa0701600:CDS |
| TGGAGAATGTACTCTTACCT+TGG | 0.430524 | 4_4:-73037017 | None:intergenic |
| ACTCTTCCATTTCTTCTGGC+TGG | 0.432481 | 4_4:-73037246 | None:intergenic |
| AGAGGATACATGAGAGATGA+AGG | 0.442815 | 4_4:-73036303 | None:intergenic |
| TACATAAGAGGGAAATAATT+GGG | 0.446625 | 4_4:-73036849 | None:intergenic |
| GAAAGAAGAAGAGGAAATTG+TGG | 0.448238 | 4_4:+73037114 | Msa0701600:CDS |
| GCATTCTGGAGATTGTCATT+TGG | 0.470215 | 4_4:+73036524 | Msa0701600:CDS |
| TTCCTTGTGGGAATAGAGGC+AGG | 0.471947 | 4_4:+73036477 | Msa0701600:CDS |
| AAAGATGAAGAAAGAAGAAG+AGG | 0.484787 | 4_4:+73037105 | Msa0701600:CDS |
| ATTGTTGTCGTTGCATCAGA+CGG | 0.491811 | 4_4:-73036407 | None:intergenic |
| TTGTTGTCGTTGCATCAGAC+GGG | 0.493988 | 4_4:-73036406 | None:intergenic |
| TTAAAGCAAAGGTTAACAAA+AGG | 0.494673 | 4_4:+73036939 | Msa0701600:CDS |
| TAAATGTAAATCCTTAGAAA+AGG | 0.497808 | 4_4:+73036799 | Msa0701600:CDS |
| ATGCTTTGATAATGATATCA+TGG | 0.506592 | 4_4:-73037306 | None:intergenic |
| AAGAGTACATTCTCCAAAGA+TGG | 0.518216 | 4_4:+73037024 | Msa0701600:CDS |
| GAAGAAGCTGAAGCTGAAGA+AGG | 0.519649 | 4_4:-73036260 | None:intergenic |
| ATAGAGATTCAGTTCATCCT+AGG | 0.520159 | 4_4:+73039259 | Msa0701600:CDS |
| AAGCAAAGGTTAACAAAAGG+AGG | 0.522101 | 4_4:+73036942 | Msa0701600:CDS |
| CAAGAAATCAAACAATGAAG+TGG | 0.530510 | 4_4:+73036225 | None:intergenic |
| GGTCTTGGATTTCAAAGTGT+CGG | 0.531784 | 4_4:+73036887 | Msa0701600:CDS |
| ACTCAGAACTCCCCGTCTGA+TGG | 0.532872 | 4_4:+73036443 | Msa0701600:CDS |
| AGTCGAAATACGCAAAATGA+AGG | 0.533126 | 4_4:+73037054 | Msa0701600:CDS |
| TTGTGGAGGAAACAGAAGAA+GGG | 0.535857 | 4_4:+73037131 | Msa0701600:CDS |
| CATTATCAAAGCATTTCGAC+AGG | 0.549940 | 4_4:+73037315 | Msa0701600:CDS |
| ATGTGAGGAGTTTAAAGCAA+AGG | 0.562245 | 4_4:+73036928 | Msa0701600:CDS |
| CTTTCTGCATCTACATAAGA+GGG | 0.562393 | 4_4:-73036860 | None:intergenic |
| GAATCTCTAAAATCTTGTTG+TGG | 0.573719 | 4_4:-73037190 | None:intergenic |
| ATTGTGGAGGAAACAGAAGA+AGG | 0.577830 | 4_4:+73037130 | Msa0701600:CDS |
| AGGAAGTTGAGTGCTTAAAG+AGG | 0.596150 | 4_4:+73036687 | Msa0701600:CDS |
| GCTTAAAGAGGAGATATGAG+AGG | 0.596446 | 4_4:+73036699 | Msa0701600:CDS |
| GGTTCATCACAATTTCCTTG+TGG | 0.598854 | 4_4:+73036464 | Msa0701600:CDS |
| AGAAGAAGAGGAAATTGTGG+AGG | 0.599408 | 4_4:+73037117 | Msa0701600:CDS |
| AATCAAACAATGAAGTGGAG+TGG | 0.599426 | 4_4:+73036230 | None:intergenic |
| AGCAAAGGTTAACAAAAGGA+GGG | 0.601137 | 4_4:+73036943 | Msa0701600:CDS |
| GATACATGAGAGATGAAGGA+AGG | 0.612433 | 4_4:-73036299 | None:intergenic |
| AATTGTGATGAACCATCAGA+CGG | 0.617022 | 4_4:-73036455 | None:intergenic |
| ATTGTGATGAACCATCAGAC+GGG | 0.626786 | 4_4:-73036454 | None:intergenic |
| GAAACCAAAGCAGAGTTCCA+AGG | 0.627313 | 4_4:+73037000 | Msa0701600:CDS |
| AGTTTGGATGTGAAAAGACA+TGG | 0.628614 | 4_4:+73036608 | Msa0701600:CDS |
| GAAATTACAGAATGCAGCAG+AGG | 0.634808 | 4_4:+73036754 | Msa0701600:CDS |
| TAATGAAACAAAGAGTGCAA+AGG | 0.636359 | 4_4:+73036667 | Msa0701600:CDS |
| TGTTGTCGTTGCATCAGACG+GGG | 0.638223 | 4_4:-73036405 | None:intergenic |
| ATCAGACGGGGAGTTCTGAG+TGG | 0.651626 | 4_4:-73036441 | None:intergenic |
| TGAGCAGAGAATTACAGAGG+AGG | 0.661098 | 4_4:+73036978 | Msa0701600:CDS |
| TCAGACGGGGAGTTCTGAGT+GGG | 0.663234 | 4_4:-73036440 | None:intergenic |
| AACCTGCCTCTATTCCCACA+AGG | 0.669707 | 4_4:-73036479 | None:intergenic |
| ATGTGAGCAGAGAATTACAG+AGG | 0.684434 | 4_4:+73036975 | Msa0701600:CDS |
| AAATGGTGTGAATCAATGTG+AGG | 0.711307 | 4_4:+73036913 | Msa0701600:CDS |
| TTGTGATGAACCATCAGACG+GGG | 0.714122 | 4_4:-73036453 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTAGTTATCAAATTTAT+TGG | - | chr4_4:73037901-73037920 | None:intergenic | 10.0% |
| !! | ATAGTATATTTATTAATTGC+AGG | - | chr4_4:73037799-73037818 | None:intergenic | 15.0% |
| !!! | TAATATTGTTTTATGTAATC+AGG | - | chr4_4:73037964-73037983 | None:intergenic | 15.0% |
| !! | CTTATATACAAAAAAAAAAG+AGG | - | chr4_4:73038028-73038047 | None:intergenic | 15.0% |
| !! | ATATATCAATATATCATATC+AGG | + | chr4_4:73038325-73038344 | Msa0701600:intron | 15.0% |
| !! | TGTTTGATATTATAATAGTT+TGG | - | chr4_4:73038384-73038403 | None:intergenic | 15.0% |
| !! | ATAAAAACAATAAAAGCAAA+AGG | + | chr4_4:73038531-73038550 | Msa0701600:intron | 15.0% |
| !! | TTATGTCTTTATAGTTAAAT+AGG | - | chr4_4:73038871-73038890 | None:intergenic | 15.0% |
| !! | ATAAAGACATAAAACAAAAA+TGG | + | chr4_4:73038879-73038898 | Msa0701600:intron | 15.0% |
| !!! | TATCTTTACTTTTCTTCTTT+TGG | - | chr4_4:73036568-73036587 | None:intergenic | 20.0% |
| !! | TAAATGTAAATCCTTAGAAA+AGG | + | chr4_4:73036799-73036818 | Msa0701600:CDS | 20.0% |
| !! | ATTTATTACACAAACTTGAA+TGG | - | chr4_4:73037357-73037376 | None:intergenic | 20.0% |
| !! | ATAAATTACAGATTAGAACT+TGG | - | chr4_4:73037446-73037465 | None:intergenic | 20.0% |
| !! | ATGTATTTACTCTTACTATT+AGG | - | chr4_4:73037768-73037787 | None:intergenic | 20.0% |
| !! | TCCAAAAAAAAAACTATGTA+TGG | + | chr4_4:73037826-73037845 | Msa0701600:intron | 20.0% |
| !! | TAATGACATAATCTACAATA+TGG | + | chr4_4:73037850-73037869 | Msa0701600:intron | 20.0% |
| !! | AATGACATAATCTACAATAT+GGG | + | chr4_4:73037851-73037870 | Msa0701600:intron | 20.0% |
| !! | ATAAACAGTAATACATCAAT+GGG | - | chr4_4:73039043-73039062 | None:intergenic | 20.0% |
| !! | TATAAACAGTAATACATCAA+TGG | - | chr4_4:73039044-73039063 | None:intergenic | 20.0% |
| ! | TACATAAGAGGGAAATAATT+GGG | - | chr4_4:73036852-73036871 | None:intergenic | 25.0% |
| ! | TTAAAGCAAAGGTTAACAAA+AGG | + | chr4_4:73036939-73036958 | Msa0701600:CDS | 25.0% |
| ! | AATGATATCATGGTATTCAT+TGG | - | chr4_4:73037299-73037318 | None:intergenic | 25.0% |
| !!! | ATGCTTTGATAATGATATCA+TGG | - | chr4_4:73037309-73037328 | None:intergenic | 25.0% |
| ! | CAACTATTTACAATTCTAAC+AGG | - | chr4_4:73037415-73037434 | None:intergenic | 25.0% |
| ! | TATAATTATTCTTCAGCAGT+AGG | + | chr4_4:73037600-73037619 | Msa0701600:intron | 25.0% |
| !! | AATAAAAAAGTCTAAAGCAC+CGG | + | chr4_4:73037625-73037644 | Msa0701600:intron | 25.0% |
| ! | ATTTACTCTTACTATTAGGA+GGG | - | chr4_4:73037764-73037783 | None:intergenic | 25.0% |
| ! | TATTTACTCTTACTATTAGG+AGG | - | chr4_4:73037765-73037784 | None:intergenic | 25.0% |
| !!! | GCCATACATAGTTTTTTTTT+TGG | - | chr4_4:73037830-73037849 | None:intergenic | 25.0% |
| ! | CAAATCAAAGACATCTATTA+TGG | - | chr4_4:73038116-73038135 | None:intergenic | 25.0% |
| ! | TATCTTAAATGTCAACAAAG+AGG | + | chr4_4:73038144-73038163 | Msa0701600:intron | 25.0% |
| ! | ATTCACATCATGTGAAATTT+AGG | - | chr4_4:73038417-73038436 | None:intergenic | 25.0% |
| ! | AATAAGCAGTTTACATCTAA+TGG | + | chr4_4:73038460-73038479 | Msa0701600:intron | 25.0% |
| !! | GTTTACATCTAATGGATAAA+AGG | + | chr4_4:73038468-73038487 | Msa0701600:intron | 25.0% |
| ! | ATGTTGAGAAGACTATAAAA+AGG | + | chr4_4:73038563-73038582 | Msa0701600:intron | 25.0% |
| ! | TTTGACATAATGAGTATGAT+AGG | - | chr4_4:73038691-73038710 | None:intergenic | 25.0% |
| ! | GGCTAATTTCTATTTATTTC+TGG | - | chr4_4:73038757-73038776 | None:intergenic | 25.0% |
| ! | TTCCATTGCTGTAAAAAAAA+AGG | - | chr4_4:73038798-73038817 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTACAGCAATGGA+AGG | + | chr4_4:73038797-73038816 | Msa0701600:intron | 25.0% |
| ! | TAGTTAAATAGGTCTAAACT+TGG | - | chr4_4:73038860-73038879 | None:intergenic | 25.0% |
| ! | AATATAAAATCTCCACTTTG+AGG | + | chr4_4:73038971-73038990 | Msa0701600:intron | 25.0% |
| ! | ATTCAGCAATATAGTAGTAT+TGG | - | chr4_4:73039241-73039260 | None:intergenic | 25.0% |
| ! | TAATGAAACAAAGAGTGCAA+AGG | + | chr4_4:73036667-73036686 | Msa0701600:CDS | 30.0% |
| CTACATAAGAGGGAAATAAT+TGG | - | chr4_4:73036853-73036872 | None:intergenic | 30.0% | |
| AAAGATGAAGAAAGAAGAAG+AGG | + | chr4_4:73037105-73037124 | Msa0701600:CDS | 30.0% | |
| !! | GAATCTCTAAAATCTTGTTG+TGG | - | chr4_4:73037193-73037212 | None:intergenic | 30.0% |
| AGTTCTTTGTGTATGCAAAT+CGG | + | chr4_4:73037508-73037527 | Msa0701600:intron | 30.0% | |
| !!! | TTCTACTTTTGGAATCTCAT+TGG | - | chr4_4:73037664-73037683 | None:intergenic | 30.0% |
| TCCAAAAGTAGAAACAGTTT+AGG | + | chr4_4:73037671-73037690 | Msa0701600:intron | 30.0% | |
| !!! | TCCTAAACTGTTTCTACTTT+TGG | - | chr4_4:73037675-73037694 | None:intergenic | 30.0% |
| GCATATTACTACAATTACAG+TGG | + | chr4_4:73037707-73037726 | Msa0701600:intron | 30.0% | |
| ! | TGTTTTATGTAATCAGGTGA+CGG | - | chr4_4:73037958-73037977 | None:intergenic | 30.0% |
| AAGACATCTATTATGGTGAT+AGG | - | chr4_4:73038109-73038128 | None:intergenic | 30.0% | |
| !!! | TTTTGACTTCACTATTTGAG+AGG | + | chr4_4:73038246-73038265 | Msa0701600:intron | 30.0% |
| TATCATATCAGGCATCTATA+AGG | + | chr4_4:73038336-73038355 | Msa0701600:intron | 30.0% | |
| CTGGAAATATTATCTAGTCA+TGG | - | chr4_4:73038738-73038757 | None:intergenic | 30.0% | |
| !!! | TGCCTTTTTTTTTACAGCAA+TGG | + | chr4_4:73038793-73038812 | Msa0701600:intron | 30.0% |
| GAATATAAAAGTCCTCAAAG+TGG | - | chr4_4:73038986-73039005 | None:intergenic | 30.0% | |
| TCTCAAAAGTTACAAGAATG+GGG | - | chr4_4:73039083-73039102 | None:intergenic | 30.0% | |
| GTCTCAAAAGTTACAAGAAT+GGG | - | chr4_4:73039084-73039103 | None:intergenic | 30.0% | |
| AGTCTCAAAAGTTACAAGAA+TGG | - | chr4_4:73039085-73039104 | None:intergenic | 30.0% | |
| ! | AAATGAATTTTCCTGCTGAA+AGG | + | chr4_4:73039130-73039149 | Msa0701600:intron | 30.0% |
| !!! | CTGTTTTTGGAACTGATTTT+GGG | - | chr4_4:73039292-73039311 | None:intergenic | 30.0% |
| ! | CTACTTCATATTCCTGTTTT+TGG | - | chr4_4:73039305-73039324 | None:intergenic | 30.0% |
| !! | CTCATGTATCCTCTTTTTCA+TGG | + | chr4_4:73036312-73036331 | Msa0701600:CDS | 35.0% |
| AATTGTGATGAACCATCAGA+CGG | - | chr4_4:73036458-73036477 | None:intergenic | 35.0% | |
| GTTCATCACAATTTCCTTGT+GGG | + | chr4_4:73036465-73036484 | Msa0701600:CDS | 35.0% | |
| ACATCCAAACTGTACATTAC+TGG | - | chr4_4:73036599-73036618 | None:intergenic | 35.0% | |
| AGTTTGGATGTGAAAAGACA+TGG | + | chr4_4:73036608-73036627 | Msa0701600:CDS | 35.0% | |
| CTTTCTGCATCTACATAAGA+GGG | - | chr4_4:73036863-73036882 | None:intergenic | 35.0% | |
| ACTTTCTGCATCTACATAAG+AGG | - | chr4_4:73036864-73036883 | None:intergenic | 35.0% | |
| TATGTAGATGCAGAAAGTTC+TGG | + | chr4_4:73036866-73036885 | Msa0701600:CDS | 35.0% | |
| !! | TTTCAAAGTGTCGGAGAAAA+TGG | + | chr4_4:73036896-73036915 | Msa0701600:CDS | 35.0% |
| AAATGGTGTGAATCAATGTG+AGG | + | chr4_4:73036913-73036932 | Msa0701600:CDS | 35.0% | |
| ! | ATGTGAGGAGTTTAAAGCAA+AGG | + | chr4_4:73036928-73036947 | Msa0701600:CDS | 35.0% |
| AAGCAAAGGTTAACAAAAGG+AGG | + | chr4_4:73036942-73036961 | Msa0701600:CDS | 35.0% | |
| AGCAAAGGTTAACAAAAGGA+GGG | + | chr4_4:73036943-73036962 | Msa0701600:CDS | 35.0% | |
| ! | AAGAGTACATTCTCCAAAGA+TGG | + | chr4_4:73037024-73037043 | Msa0701600:CDS | 35.0% |
| AGTCGAAATACGCAAAATGA+AGG | + | chr4_4:73037054-73037073 | Msa0701600:CDS | 35.0% | |
| GAAAGAAGAAGAGGAAATTG+TGG | + | chr4_4:73037114-73037133 | Msa0701600:CDS | 35.0% | |
| AACAACTCTTCCATTTCTTC+TGG | - | chr4_4:73037253-73037272 | None:intergenic | 35.0% | |
| ! | CATTATCAAAGCATTTCGAC+AGG | + | chr4_4:73037315-73037334 | Msa0701600:CDS | 35.0% |
| TACTACAATTACAGTGGTCT+TGG | + | chr4_4:73037713-73037732 | Msa0701600:intron | 35.0% | |
| ! | AATTACAGTGGTCTTGGATA+AGG | + | chr4_4:73037719-73037738 | Msa0701600:intron | 35.0% |
| TGGGACAATTAGTATACTGA+AGG | + | chr4_4:73037870-73037889 | Msa0701600:intron | 35.0% | |
| GGGACAATTAGTATACTGAA+GGG | + | chr4_4:73037871-73037890 | Msa0701600:intron | 35.0% | |
| ! | GTTTTATGTAATCAGGTGAC+GGG | - | chr4_4:73037957-73037976 | None:intergenic | 35.0% |
| AAAGAGGTAACACCAGTTAT+GGG | - | chr4_4:73038012-73038031 | None:intergenic | 35.0% | |
| AAAAGAGGTAACACCAGTTA+TGG | - | chr4_4:73038013-73038032 | None:intergenic | 35.0% | |
| AAAATGCCTATGAGAGCTTA+TGG | + | chr4_4:73038067-73038086 | Msa0701600:intron | 35.0% | |
| CACATCATGTGAAATTTAGG+TGG | - | chr4_4:73038414-73038433 | None:intergenic | 35.0% | |
| ATAAAAAGGTCCAAGTCTTG+TGG | + | chr4_4:73038577-73038596 | Msa0701600:intron | 35.0% | |
| TGAAATCTTACCACAAGACT+TGG | - | chr4_4:73038590-73038609 | None:intergenic | 35.0% | |
| AAACTTGGATTGCCTTTAGA+AGG | - | chr4_4:73038845-73038864 | None:intergenic | 35.0% | |
| TAAGTGCAAAAAAGGTGACA+AGG | + | chr4_4:73038927-73038946 | Msa0701600:intron | 35.0% | |
| AAGTGCAAAAAAGGTGACAA+GGG | + | chr4_4:73038928-73038947 | Msa0701600:intron | 35.0% | |
| ACAAGGGGAAAGGTTTAATT+TGG | + | chr4_4:73038944-73038963 | Msa0701600:intron | 35.0% | |
| ! | TTTTCCTGCTGAAAGGAATT+TGG | + | chr4_4:73039137-73039156 | Msa0701600:intron | 35.0% |
| ! | TTTTCCAAATTCCTTTCAGC+AGG | - | chr4_4:73039144-73039163 | None:intergenic | 35.0% |
| ATAGAGATTCAGTTCATCCT+AGG | + | chr4_4:73039259-73039278 | Msa0701600:CDS | 35.0% | |
| !! | TGATTTTGGGAATCATTCCT+AGG | - | chr4_4:73039279-73039298 | None:intergenic | 35.0% |
| !!! | CCTGTTTTTGGAACTGATTT+TGG | - | chr4_4:73039293-73039312 | None:intergenic | 35.0% |
| CCAAAATCAGTTCCAAAAAC+AGG | + | chr4_4:73039290-73039309 | Msa0701600:CDS | 35.0% | |
| GATACATGAGAGATGAAGGA+AGG | - | chr4_4:73036302-73036321 | None:intergenic | 40.0% | |
| AGAGGATACATGAGAGATGA+AGG | - | chr4_4:73036306-73036325 | None:intergenic | 40.0% | |
| CTTTGACAGCCATGAAAAAG+AGG | - | chr4_4:73036324-73036343 | None:intergenic | 40.0% | |
| ATTGTTGTCGTTGCATCAGA+CGG | - | chr4_4:73036410-73036429 | None:intergenic | 40.0% | |
| ATTGTGATGAACCATCAGAC+GGG | - | chr4_4:73036457-73036476 | None:intergenic | 40.0% | |
| GGTTCATCACAATTTCCTTG+TGG | + | chr4_4:73036464-73036483 | Msa0701600:CDS | 40.0% | |
| CAATTTCCTTGTGGGAATAG+AGG | + | chr4_4:73036473-73036492 | Msa0701600:CDS | 40.0% | |
| !! | AATAGAGGCAGGTTTTATGG+AGG | + | chr4_4:73036488-73036507 | Msa0701600:CDS | 40.0% |
| ! | GCATTCTGGAGATTGTCATT+TGG | + | chr4_4:73036524-73036543 | Msa0701600:CDS | 40.0% |
| GAAGCCAGTAATGTACAGTT+TGG | + | chr4_4:73036592-73036611 | Msa0701600:CDS | 40.0% | |
| AGGAAGTTGAGTGCTTAAAG+AGG | + | chr4_4:73036687-73036706 | Msa0701600:CDS | 40.0% | |
| GCTTAAAGAGGAGATATGAG+AGG | + | chr4_4:73036699-73036718 | Msa0701600:CDS | 40.0% | |
| GAAATTACAGAATGCAGCAG+AGG | + | chr4_4:73036754-73036773 | Msa0701600:CDS | 40.0% | |
| ! | TTGGAGCTCATCCTTTTCTA+AGG | - | chr4_4:73036813-73036832 | None:intergenic | 40.0% |
| ! | GGGTTCTTGGTGATTCAAAT+TGG | - | chr4_4:73036832-73036851 | None:intergenic | 40.0% |
| GAGGGAAATAATTGGGTTCT+TGG | - | chr4_4:73036845-73036864 | None:intergenic | 40.0% | |
| GGTCTTGGATTTCAAAGTGT+CGG | + | chr4_4:73036887-73036906 | Msa0701600:CDS | 40.0% | |
| ATGTGAGCAGAGAATTACAG+AGG | + | chr4_4:73036975-73036994 | Msa0701600:CDS | 40.0% | |
| TGGAGAATGTACTCTTACCT+TGG | - | chr4_4:73037020-73037039 | None:intergenic | 40.0% | |
| TCGACTTTAGTAGCCATCTT+TGG | - | chr4_4:73037040-73037059 | None:intergenic | 40.0% | |
| AGAAGAAGAGGAAATTGTGG+AGG | + | chr4_4:73037117-73037136 | Msa0701600:CDS | 40.0% | |
| ATTGTGGAGGAAACAGAAGA+AGG | + | chr4_4:73037130-73037149 | Msa0701600:CDS | 40.0% | |
| TTGTGGAGGAAACAGAAGAA+GGG | + | chr4_4:73037131-73037150 | Msa0701600:CDS | 40.0% | |
| ! | TGCAGTTGTGAAGTGTTCTT+TGG | + | chr4_4:73037165-73037184 | Msa0701600:CDS | 40.0% |
| ! | TCAAAGCATTTCGACAGGTA+TGG | + | chr4_4:73037320-73037339 | Msa0701600:intron | 40.0% |
| !! | CATTGGCTTTCTCTTCTTAC+CGG | - | chr4_4:73037647-73037666 | None:intergenic | 40.0% |
| ACTATTAGGAGGGTTGGAAA+TGG | - | chr4_4:73037754-73037773 | None:intergenic | 40.0% | |
| ACTCTTACTATTAGGAGGGT+TGG | - | chr4_4:73037760-73037779 | None:intergenic | 40.0% | |
| CGTCTGCAAGAATAGGATAA+AGG | - | chr4_4:73037929-73037948 | None:intergenic | 40.0% | |
| CAAGTCACTGTCTAACTACT+TGG | + | chr4_4:73038181-73038200 | Msa0701600:intron | 40.0% | |
| CTTGGCAATAGCATACCAAA+TGG | + | chr4_4:73038199-73038218 | Msa0701600:intron | 40.0% | |
| ACCAAATGGAACAACTCTTG+TGG | + | chr4_4:73038213-73038232 | Msa0701600:intron | 40.0% | |
| ACCACAAGAGTTGTTCCATT+TGG | - | chr4_4:73038217-73038236 | None:intergenic | 40.0% | |
| AATGGAACAACTCTTGTGGT+TGG | + | chr4_4:73038217-73038236 | Msa0701600:intron | 40.0% | |
| ! | AAAATCTGCTATGACTTGGC+TGG | - | chr4_4:73038502-73038521 | None:intergenic | 40.0% |
| ! | AGCCAAGTCATAGCAGATTT+TGG | + | chr4_4:73038501-73038520 | Msa0701600:intron | 40.0% |
| CACCAAAATCTGCTATGACT+TGG | - | chr4_4:73038506-73038525 | None:intergenic | 40.0% | |
| AGGCATGATTGAGTTAAGCA+TGG | - | chr4_4:73038778-73038797 | None:intergenic | 40.0% | |
| GTGATCATCTCACAGTTGTT+AGG | + | chr4_4:73038819-73038838 | Msa0701600:intron | 40.0% | |
| ACAGTTGTTAGGCCTTCTAA+AGG | + | chr4_4:73038830-73038849 | Msa0701600:intron | 40.0% | |
| CTGCTGAAACATTCATGAGT+GGG | + | chr4_4:73038904-73038923 | Msa0701600:intron | 40.0% | |
| TGAGTGGGTAAGTGCAAAAA+AGG | + | chr4_4:73038919-73038938 | Msa0701600:intron | 40.0% | |
| AGTGCAAAAAAGGTGACAAG+GGG | + | chr4_4:73038929-73038948 | Msa0701600:intron | 40.0% | |
| AAAAAAGGTGACAAGGGGAA+AGG | + | chr4_4:73038934-73038953 | Msa0701600:intron | 40.0% | |
| TCTATTTGCATGAGGGTCTA+GGG | - | chr4_4:73039017-73039036 | None:intergenic | 40.0% | |
| TGGGTAGTCTATTTGCATGA+GGG | - | chr4_4:73039024-73039043 | None:intergenic | 40.0% | |
| ATGGGTAGTCTATTTGCATG+AGG | - | chr4_4:73039025-73039044 | None:intergenic | 40.0% | |
| GAAGAAGCTGAAGCTGAAGA+AGG | - | chr4_4:73036263-73036282 | None:intergenic | 45.0% | |
| ! | GGAGTTCTGCATCAGCTTTT+CGG | - | chr4_4:73036387-73036406 | None:intergenic | 45.0% |
| TTGTTGTCGTTGCATCAGAC+GGG | - | chr4_4:73036409-73036428 | None:intergenic | 45.0% | |
| TTGTGATGAACCATCAGACG+GGG | - | chr4_4:73036456-73036475 | None:intergenic | 45.0% | |
| ! | GGGAATAGAGGCAGGTTTTA+TGG | + | chr4_4:73036485-73036504 | Msa0701600:CDS | 45.0% |
| ! | GATGCAGAAAGTTCTGGTCT+TGG | + | chr4_4:73036872-73036891 | Msa0701600:CDS | 45.0% |
| TGAGCAGAGAATTACAGAGG+AGG | + | chr4_4:73036978-73036997 | Msa0701600:CDS | 45.0% | |
| GAAACCAAAGCAGAGTTCCA+AGG | + | chr4_4:73037000-73037019 | Msa0701600:CDS | 45.0% | |
| CTTACCTTGGAACTCTGCTT+TGG | - | chr4_4:73037007-73037026 | None:intergenic | 45.0% | |
| GATAAGCCAGCCAGAAGAAA+TGG | + | chr4_4:73037240-73037259 | Msa0701600:CDS | 45.0% | |
| ACTCTTCCATTTCTTCTGGC+TGG | - | chr4_4:73037249-73037268 | None:intergenic | 45.0% | |
| TAGGAGGGTTGGAAATGGTA+GGG | - | chr4_4:73037749-73037768 | None:intergenic | 45.0% | |
| TTAGGAGGGTTGGAAATGGT+AGG | - | chr4_4:73037750-73037769 | None:intergenic | 45.0% | |
| TGGGTCAGTCATGTTCTCTT+AGG | - | chr4_4:73037993-73038012 | None:intergenic | 45.0% | |
| GAACATGACTGACCCATAAC+TGG | + | chr4_4:73037997-73038016 | Msa0701600:intron | 45.0% | |
| ATGCCTATGAGAGCTTATGG+TGG | + | chr4_4:73038070-73038089 | Msa0701600:intron | 45.0% | |
| TGCCTATGAGAGCTTATGGT+GGG | + | chr4_4:73038071-73038090 | Msa0701600:intron | 45.0% | |
| ATCCCACCATAAGCTCTCAT+AGG | - | chr4_4:73038076-73038095 | None:intergenic | 45.0% | |
| GCTGCTGAAACATTCATGAG+TGG | + | chr4_4:73038903-73038922 | Msa0701600:intron | 45.0% | |
| GTCTATTTGCATGAGGGTCT+AGG | - | chr4_4:73039018-73039037 | None:intergenic | 45.0% | |
| TGTTGTCGTTGCATCAGACG+GGG | - | chr4_4:73036408-73036427 | None:intergenic | 50.0% | |
| TTCCTTGTGGGAATAGAGGC+AGG | + | chr4_4:73036477-73036496 | Msa0701600:CDS | 50.0% | |
| AACCTGCCTCTATTCCCACA+AGG | - | chr4_4:73036482-73036501 | None:intergenic | 50.0% | |
| !! | AGAGGCAGGTTTTATGGAGG+TGG | + | chr4_4:73036491-73036510 | Msa0701600:CDS | 50.0% |
| !! | CAGGTTTTATGGAGGTGGTG+AGG | + | chr4_4:73036496-73036515 | Msa0701600:CDS | 50.0% |
| GTGGTGAGGATGATGCATTC+TGG | + | chr4_4:73036510-73036529 | Msa0701600:CDS | 50.0% | |
| GGTCTTGCGTCTGCAAGAAT+AGG | - | chr4_4:73037936-73037955 | None:intergenic | 50.0% | |
| !! | TCAGACGGGGAGTTCTGAGT+GGG | - | chr4_4:73036443-73036462 | None:intergenic | 55.0% |
| !! | ATCAGACGGGGAGTTCTGAG+TGG | - | chr4_4:73036444-73036463 | None:intergenic | 55.0% |
| ACTCAGAACTCCCCGTCTGA+TGG | + | chr4_4:73036443-73036462 | Msa0701600:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 73036239 | 73039329 | 73036239 | ID=Msa0701600;Name=Msa0701600 |
| chr4_4 | mRNA | 73036239 | 73039329 | 73036239 | ID=Msa0701600-mRNA-1;Parent=Msa0701600;Name=Msa0701600-mRNA-1;_AED=0.10;_eAED=0.15;_QI=0|0|0|1|1|1|2|0|417 |
| chr4_4 | exon | 73036239 | 73037336 | 73036239 | ID=Msa0701600-mRNA-1:exon:22354;Parent=Msa0701600-mRNA-1 |
| chr4_4 | exon | 73039174 | 73039329 | 73039174 | ID=Msa0701600-mRNA-1:exon:22355;Parent=Msa0701600-mRNA-1 |
| chr4_4 | CDS | 73036239 | 73037336 | 73036239 | ID=Msa0701600-mRNA-1:cds;Parent=Msa0701600-mRNA-1 |
| chr4_4 | CDS | 73039174 | 73039329 | 73039174 | ID=Msa0701600-mRNA-1:cds;Parent=Msa0701600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
