AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0620250

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0620250 MtrunA17_Chr8g0386291 99.209 253 2 0 1 253 1 253 0.0 520
Msa0620250 MtrunA17_Chr1g0155361 37.264 212 126 2 37 241 17 228 1.26e-44 151
Msa0620250 MtrunA17_Chr3g0141721 39.378 193 113 2 57 249 42 230 2.05e-40 140
Msa0620250 MtrunA17_Chr5g0404561 33.766 231 137 3 32 250 6 232 7.82e-40 139
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0620250 AT3G48680.1 73.518 253 65 1 3 253 4 256 5.43e-139 391
Msa0620250 AT5G63510.1 80.342 234 35 1 31 253 19 252 6.25e-138 388
Msa0620250 AT5G63510.2 71.648 261 36 2 31 253 19 279 2.05e-130 370
Msa0620250 AT5G66510.1 39.691 194 113 1 56 249 42 231 1.77e-43 148
Msa0620250 AT1G19580.1 39.175 194 114 1 56 249 42 231 1.09e-41 144
Msa0620250 AT1G47260.1 36.041 197 126 0 35 231 21 217 3.05e-40 140
Msa0620250 AT5G66510.2 37.561 205 113 2 56 249 42 242 3.86e-40 140
Msa0620250 AT1G19580.2 39.568 139 84 0 56 194 42 180 5.66e-30 112

Find 110 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATGGAGTATGCGGTTCTT+AGG 0.229283 4_2:+71643056 None:intergenic
TCCGTATTCCACAGTATATT+TGG 0.234805 4_2:-71638337 Msa0620250:CDS
ATTTATTGCAACTGCGAGTT+TGG 0.267482 4_2:+71638392 None:intergenic
ATCGAGCCAGAGGTCATTAT+TGG 0.270806 4_2:-71638579 Msa0620250:CDS
GTAACTTTGAGCATCAAAAT+TGG 0.273209 4_2:-71637944 Msa0620250:three_prime_UTR
CGCTGGTCAAGTTCATGTTT+GGG 0.293136 4_2:-71642846 Msa0620250:CDS
TCGCTGGTCAAGTTCATGTT+TGG 0.306862 4_2:-71642847 Msa0620250:CDS
CATCACCGGATCGGGTGAAT+TGG 0.308512 4_2:-71642958 Msa0620250:CDS
CCGGATGGAATTATCCTTCC+TGG 0.321372 4_2:+71638483 None:intergenic
TCGAGAGGTATGTGACTATT+GGG 0.332114 4_2:-71638629 Msa0620250:CDS
TGCGAGTTTGGGGATTTCTA+AGG 0.332354 4_2:+71638404 None:intergenic
TTTATTGCAACTGCGAGTTT+GGG 0.333438 4_2:+71638393 None:intergenic
GGATTTCTAAGGTTTCTTCA+TGG 0.334369 4_2:+71638415 None:intergenic
ATCGTGCTAGATTCGCCATT+TGG 0.346266 4_2:+71643092 None:intergenic
TTGTGCGTGATGCTTTGTTA+TGG 0.360343 4_2:+71643039 None:intergenic
ATCGAGAGGTATGTGACTAT+TGG 0.363480 4_2:-71638630 Msa0620250:CDS
AATTCCATCCGGTGAACTTT+GGG 0.365557 4_2:-71638472 Msa0620250:CDS
TCTAGATATGACGCACAAAA+AGG 0.371246 4_2:+71638074 None:intergenic
CGATAGTGCAGGATCTTAAC+AGG 0.372381 4_2:+71638598 None:intergenic
TTCTGTTGCAAAAGCGCGTT+CGG 0.384026 4_2:+71643000 None:intergenic
TTTGGGATGGTGCTTCTGTT+TGG 0.394146 4_2:-71642829 Msa0620250:CDS
TAATTCCATCCGGTGAACTT+TGG 0.399601 4_2:-71638473 Msa0620250:CDS
GAGAAATTTAAGAAGTCCTT+GGG 0.405985 4_2:-71638309 Msa0620250:CDS
TGCGGTTCTTAGGGCTTTGT+TGG 0.406364 4_2:+71643066 None:intergenic
GATTTCTAAGGTTTCTTCAT+GGG 0.407398 4_2:+71638416 None:intergenic
TCGTGCTAGATTCGCCATTT+GGG 0.416771 4_2:+71643093 None:intergenic
TGAGAAATTTAAGAAGTCCT+TGG 0.422995 4_2:-71638310 Msa0620250:CDS
GCCGCTTGGTCTTCTCCTAC+AGG 0.443345 4_2:-71642725 Msa0620250:intron
ATCACCGGATCGGGTGAATT+GGG 0.444045 4_2:-71642957 Msa0620250:CDS
CATATCTAGATGGGAAATAG+TGG 0.449007 4_2:-71638061 Msa0620250:three_prime_UTR
TCCAAATATACTGTGGAATA+CGG 0.450864 4_2:+71638336 None:intergenic
TATGGAGTATGCGGTTCTTA+GGG 0.453815 4_2:+71643057 None:intergenic
GATGGTGCTTCTGTTTGGCC+TGG 0.458679 4_2:-71642824 Msa0620250:CDS
GGTCAAAGTCCTCACAAACT+TGG 0.460378 4_2:+71638437 None:intergenic
GCAGGATCTTAACAGGCTAT+AGG 0.461030 4_2:+71638605 None:intergenic
ACACACTCAATTCTTGAAGC+TGG 0.465246 4_2:-71638519 Msa0620250:CDS
TATTACTCCATCACCGGATC+GGG 0.470199 4_2:-71642966 Msa0620250:CDS
TGACCAGCGAGAACCACATT+AGG 0.477831 4_2:+71642860 None:intergenic
GCTGTGTTCTTCATGCCGCT+TGG 0.481268 4_2:-71642739 Msa0620250:CDS
CTCTCGATTGAAGTCTCAGC+TGG 0.481721 4_2:+71638645 None:intergenic
TCGAGCCAGAGGTCATTATT+GGG 0.484978 4_2:-71638578 Msa0620250:CDS
AAAGTCCTCACAAACTTGGC+TGG 0.485332 4_2:+71638441 None:intergenic
TAATCCCAATTCACCCGATC+CGG 0.490619 4_2:+71642953 None:intergenic
TGCTGCCCAATAATGACCTC+TGG 0.493950 4_2:+71638573 None:intergenic
AATGTGGTGGAGCTAGGAAA+TGG 0.499166 4_2:+71643139 None:intergenic
TTTGTGCGTCATATCTAGAT+GGG 0.503688 4_2:-71638070 Msa0620250:three_prime_UTR
ACCTCGTTCTCTCTCCCAAA+TGG 0.508035 4_2:-71643107 Msa0620250:exon
TTCGGAAGCCACTGACCCAA+TGG 0.512785 4_2:+71642908 None:intergenic
AGGGGTACATAAAAGATTGT+GGG 0.515538 4_2:-71643252 None:intergenic
CAATTCACCCGATCCGGTGA+TGG 0.515623 4_2:+71642959 None:intergenic
GCACCTAATGTGGTTCTCGC+TGG 0.515982 4_2:-71642863 Msa0620250:CDS
CCTCATGGAAGGTTCTATAG+TGG 0.516544 4_2:-71638544 Msa0620250:CDS
CACACTCAATTCTTGAAGCT+GGG 0.520187 4_2:-71638518 Msa0620250:CDS
TACTCTTGTGTGTTGCTCAA+AGG 0.521274 4_2:-71638022 Msa0620250:three_prime_UTR
TAAGCATCAACAGCTATCTT+CGG 0.524311 4_2:+71642890 None:intergenic
CTATTACTCCATCACCGGAT+CGG 0.535138 4_2:-71642967 Msa0620250:CDS
TCTTGTGTGTTGCTCAAAGG+AGG 0.535781 4_2:-71638019 Msa0620250:three_prime_UTR
GACCTCTGGCTCGATAGTGC+AGG 0.537220 4_2:+71638587 None:intergenic
TCGGAAGCCACTGACCCAAT+GGG 0.538002 4_2:+71642909 None:intergenic
TGGCCTGGTTGTGTTCTTCG+TGG 0.540218 4_2:-71642809 Msa0620250:CDS
TGGGCAGCATTCCATCCTCA+TGG 0.542081 4_2:-71638559 Msa0620250:CDS
TATAGAACCTTCCATGAGGA+TGG 0.545483 4_2:+71638548 None:intergenic
CCATCCGGTGAACTTTGGGC+AGG 0.548069 4_2:-71638468 Msa0620250:CDS
ACAGAGGAAGATAATCCCAT+TGG 0.551861 4_2:-71642924 Msa0620250:CDS
GTATTCCACAGTATATTTGG+AGG 0.552628 4_2:-71638334 Msa0620250:CDS
TAGGGGTACATAAAAGATTG+TGG 0.554589 4_2:-71643253 None:intergenic
CAGAGGAAGATAATCCCATT+GGG 0.563728 4_2:-71642923 Msa0620250:CDS
AGATAATCCCATTGGGTCAG+TGG 0.566753 4_2:-71642916 Msa0620250:CDS
TCACCACGAAGAACACAACC+AGG 0.574612 4_2:+71642806 None:intergenic
GGTCAAGTTCATGTTTGGGA+TGG 0.578896 4_2:-71642842 Msa0620250:CDS
GATCTGAATAAGATTAGTGT+TGG 0.581880 4_2:-71642785 Msa0620250:CDS
GCATTATTATTCACAGCCGT+AGG 0.582111 4_2:+71637971 None:intergenic
GAAATCTATTACTCCATCAC+CGG 0.585979 4_2:-71642972 Msa0620250:CDS
TGAGCATCAAAATTGGCTTG+AGG 0.589291 4_2:-71637937 Msa0620250:three_prime_UTR
ATTACCTGCCCAAAGTTCAC+CGG 0.593632 4_2:+71638464 None:intergenic
TGCTTACGTGGCACCTAATG+TGG 0.594957 4_2:-71642873 Msa0620250:CDS
GCCATTTGGGAGAGAGAACG+AGG 0.596660 4_2:+71643106 None:intergenic
CCAGGAAGGATAATTCCATC+CGG 0.597542 4_2:-71638483 Msa0620250:CDS
CGATTGAAGTCTCAGCTGGA+AGG 0.598226 4_2:+71638649 None:intergenic
AAACTCATCGAAGAAACCTA+CGG 0.599693 4_2:-71637987 Msa0620250:three_prime_UTR
TTATTGCAACTGCGAGTTTG+GGG 0.604356 4_2:+71638394 None:intergenic
CAGCATTCCATCCTCATGGA+AGG 0.605878 4_2:-71638555 Msa0620250:CDS
GGAGCTAGGAAATGGAAGAG+TGG 0.606166 4_2:+71643147 None:intergenic
GGTCAGTAGTTCCACCAGGA+AGG 0.611863 4_2:-71638497 Msa0620250:CDS
ACTGTGAATGTGGTGGAGCT+AGG 0.611891 4_2:+71643133 None:intergenic
AATATACTGTGGAATACGGA+AGG 0.614961 4_2:+71638340 None:intergenic
ATATCTAGATGGGAAATAGT+GGG 0.617555 4_2:-71638060 Msa0620250:three_prime_UTR
CGTTCGGATGAAGCTAGTTG+CGG 0.617624 4_2:+71643016 None:intergenic
ATTGGGATTATAGAGGACAG+AGG 0.617723 4_2:-71642940 Msa0620250:CDS
TGGAATACGGAAGGAACTCA+TGG 0.622332 4_2:+71638349 None:intergenic
GATAGCTGTTGATGCTTACG+TGG 0.629649 4_2:-71642885 Msa0620250:CDS
GTAATCCAGCCAAGTTTGTG+AGG 0.634420 4_2:-71638446 Msa0620250:CDS
GGGGTACATAAAAGATTGTG+GGG 0.638703 4_2:-71643251 None:intergenic
CTCAACCTCCAAATATACTG+TGG 0.643535 4_2:+71638329 None:intergenic
CCTGCCCAAAGTTCACCGGA+TGG 0.644025 4_2:+71638468 None:intergenic
CGAGAGGTATGTGACTATTG+GGG 0.644184 4_2:-71638628 Msa0620250:CDS
ATGCTTTGTTATGGAGTATG+CGG 0.647285 4_2:+71643048 None:intergenic
ATCCTGCACTATCGAGCCAG+AGG 0.649233 4_2:-71638589 Msa0620250:CDS
TACTTTCAGAAGCAGCACAA+AGG 0.651887 4_2:+71638173 None:intergenic
CGGGTGAATTGGGATTATAG+AGG 0.652482 4_2:-71642947 Msa0620250:CDS
GCTGGGTCAGTAGTTCCACC+AGG 0.658261 4_2:-71638501 Msa0620250:CDS
CAGCTGAGACTTCAATCGAG+AGG 0.666782 4_2:-71638644 Msa0620250:CDS
GATGGAATTATCCTTCCTGG+TGG 0.673623 4_2:+71638486 None:intergenic
ACGAGGTTGTACTGTGAATG+TGG 0.676665 4_2:+71643123 None:intergenic
GCATCAAACAGAAATACCCA+AGG 0.677187 4_2:+71638293 None:intergenic
ACACAAGAGTAATTGCAACA+AGG 0.709340 4_2:+71638034 None:intergenic
ACCTGTAGGAGAAGACCAAG+CGG 0.712136 4_2:+71642724 None:intergenic
GGGTACATAAAAGATTGTGG+GGG 0.715124 4_2:-71643250 None:intergenic
CCACTATAGAACCTTCCATG+AGG 0.731073 4_2:+71638544 None:intergenic
AGGTTGTACTGTGAATGTGG+TGG 0.758492 4_2:+71643126 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAATGTTTAAAACAAAT+TGG + chr4_2:71641776-71641795 None:intergenic 10.0%
!! AGATGATTAATATTATATGA+TGG + chr4_2:71638821-71638840 None:intergenic 15.0%
!!! ATTTATTGTTCCATTTTTTT+TGG - chr4_2:71638904-71638923 Msa0620250:intron 15.0%
!!! TTTATTGTTCCATTTTTTTT+GGG - chr4_2:71638905-71638924 Msa0620250:intron 15.0%
!!! TATTTTGATAAATGAAAACA+TGG + chr4_2:71639361-71639380 None:intergenic 15.0%
!! ATCAAAATATACAATCAAAA+TGG - chr4_2:71639372-71639391 Msa0620250:intron 15.0%
!! TCAAAATATACAATCAAAAT+GGG - chr4_2:71639373-71639392 Msa0620250:intron 15.0%
!!! AAATTTGTTTATATTGATTG+AGG - chr4_2:71639491-71639510 Msa0620250:intron 15.0%
!! TCTTGAATGAAAATATTTAT+GGG - chr4_2:71639527-71639546 Msa0620250:intron 15.0%
!!! ATGATGATATACATAAATTT+TGG - chr4_2:71640051-71640070 Msa0620250:intron 15.0%
!!! TGATGATATACATAAATTTT+GGG - chr4_2:71640052-71640071 Msa0620250:intron 15.0%
!! AATTGTTAACATAAAAGTTA+GGG + chr4_2:71640430-71640449 None:intergenic 15.0%
!! AAATTGTTAACATAAAAGTT+AGG + chr4_2:71640431-71640450 None:intergenic 15.0%
!! AATTTAAGAGAAAGATATAA+TGG + chr4_2:71640642-71640661 None:intergenic 15.0%
!! TAGAAAATGAAAATAGAAAA+TGG - chr4_2:71641593-71641612 Msa0620250:intron 15.0%
!! ATATTCAAAGACAATATATA+GGG + chr4_2:71642233-71642252 None:intergenic 15.0%
!! TATATTCAAAGACAATATAT+AGG + chr4_2:71642234-71642253 None:intergenic 15.0%
!! TGTGAAATGTATAAATTACT+AGG - chr4_2:71638572-71638591 Msa0620250:CDS 20.0%
!! ATGTATAAATTACTAGGATT+TGG - chr4_2:71638578-71638597 Msa0620250:CDS 20.0%
!! TGTATAAATTACTAGGATTT+GGG - chr4_2:71638579-71638598 Msa0620250:CDS 20.0%
!!! TGTTTTCATAAAGAATGATA+AGG - chr4_2:71639015-71639034 Msa0620250:intron 20.0%
!!! GTTTTCATAAAGAATGATAA+GGG - chr4_2:71639016-71639035 Msa0620250:intron 20.0%
!! AAGATTTGAAGAAATTATCT+AGG - chr4_2:71639092-71639111 Msa0620250:intron 20.0%
!! ATAAATGAAAACATGGTTAT+CGG + chr4_2:71639354-71639373 None:intergenic 20.0%
!!! ATAATTTTTCATCATCATCA+TGG + chr4_2:71639418-71639437 None:intergenic 20.0%
!!! TGATGATGATGAAAAATTAT+TGG - chr4_2:71639418-71639437 Msa0620250:intron 20.0%
!! GTCTTGAATGAAAATATTTA+TGG - chr4_2:71639526-71639545 Msa0620250:intron 20.0%
!!! ATTTTAAAAACGAAAAGACT+TGG - chr4_2:71639563-71639582 Msa0620250:intron 20.0%
!!! TAATTTTTAAAAATCAAGGG+AGG + chr4_2:71639654-71639673 None:intergenic 20.0%
!!! ACAACTCTTATTTTTCATTT+CGG + chr4_2:71640126-71640145 None:intergenic 20.0%
!! TAACTAAATAGAAATAGTTG+GGG + chr4_2:71640884-71640903 None:intergenic 20.0%
!! CTAACTAAATAGAAATAGTT+GGG + chr4_2:71640885-71640904 None:intergenic 20.0%
!! TCTAACTAAATAGAAATAGT+TGG + chr4_2:71640886-71640905 None:intergenic 20.0%
!! TATTCTAAATAGAAATAGCT+AGG + chr4_2:71640998-71641017 None:intergenic 20.0%
!! GATCATAAATGTTTACTTAA+AGG + chr4_2:71641062-71641081 None:intergenic 20.0%
!!! TGAAAGTATATGCTTAAAAA+AGG + chr4_2:71641093-71641112 None:intergenic 20.0%
!!! ATTCATTTTTTAAAGAGAGA+TGG - chr4_2:71641375-71641394 Msa0620250:intron 20.0%
!!! TTCATTTTTTAAAGAGAGAT+GGG - chr4_2:71641376-71641395 Msa0620250:intron 20.0%
!! ATTACTTCATAGTAACTATT+TGG + chr4_2:71641677-71641696 None:intergenic 20.0%
!! TAAATCCATAGACTATAATA+AGG - chr4_2:71641838-71641857 Msa0620250:intron 20.0%
!! TAATTCCTTATTATAGTCTA+TGG + chr4_2:71641846-71641865 None:intergenic 20.0%
!!! AGGATTATGCTATTTAATTA+AGG + chr4_2:71642062-71642081 None:intergenic 20.0%
!! CTTTGAATATATATCAGTAT+TGG - chr4_2:71642243-71642262 Msa0620250:intron 20.0%
!!! ATATATCAGTATTGGAAATT+AGG - chr4_2:71642251-71642270 Msa0620250:intron 20.0%
!!! AAAGAATTTTGTTTACGCTT+TGG - chr4_2:71638477-71638496 Msa0620250:CDS 25.0%
! AACATATGCTAAGAGTAATA+GGG + chr4_2:71638639-71638658 None:intergenic 25.0%
! AAACATATGCTAAGAGTAAT+AGG + chr4_2:71638640-71638659 None:intergenic 25.0%
! TTAATAAGTAGCATGTTCTA+AGG + chr4_2:71638852-71638871 None:intergenic 25.0%
! AAAACAATCTCTCAAATAAG+GGG + chr4_2:71639001-71639020 None:intergenic 25.0%
! GAAAACAATCTCTCAAATAA+GGG + chr4_2:71639002-71639021 None:intergenic 25.0%
! TGAAAACAATCTCTCAAATA+AGG + chr4_2:71639003-71639022 None:intergenic 25.0%
! CATTGTATGCATAAAAAAGA+TGG + chr4_2:71639289-71639308 None:intergenic 25.0%
!!! CATCTTTTTTATGCATACAA+TGG - chr4_2:71639287-71639306 Msa0620250:intron 25.0%
! TCAAAATGGGATATTTATCT+AGG - chr4_2:71639386-71639405 Msa0620250:intron 25.0%
! ACTAACAATGTTACATGATA+GGG + chr4_2:71639721-71639740 None:intergenic 25.0%
! TGTTAATTGAAAAACCTAGA+AGG - chr4_2:71639962-71639981 Msa0620250:intron 25.0%
! AAATACTTGAACACTACTTA+CGG - chr4_2:71640021-71640040 Msa0620250:intron 25.0%
!!! CAACTCTTATTTTTCATTTC+GGG + chr4_2:71640125-71640144 None:intergenic 25.0%
! TGTTCAGTTAAAAACTAGAA+GGG - chr4_2:71640357-71640376 Msa0620250:intron 25.0%
! AATACTTTATATTAGTGTGC+TGG - chr4_2:71640524-71640543 Msa0620250:intron 25.0%
!!! GCTAAAGTTGATTTTGAAAT+CGG + chr4_2:71640616-71640635 None:intergenic 25.0%
!!! TTTTTCGGTTCATTTAAGTT+TGG - chr4_2:71640826-71640845 Msa0620250:intron 25.0%
!!! AGTTTCTTAGATCTGTTTTT+CGG - chr4_2:71640924-71640943 Msa0620250:intron 25.0%
! TTCTGTACATATTAACTATG+TGG + chr4_2:71641889-71641908 None:intergenic 25.0%
!! TTATTACAGTTTGCACTTTT+TGG - chr4_2:71641946-71641965 Msa0620250:intron 25.0%
!!! TGTCTTATTTGAAAATCTGA+TGG - chr4_2:71642130-71642149 Msa0620250:intron 25.0%
! TTAGGATGTGATATTCATTA+TGG - chr4_2:71642269-71642288 Msa0620250:intron 25.0%
!! AGATCTTTGAAAAATGAACA+TGG - chr4_2:71642386-71642405 Msa0620250:intron 25.0%
!! GATCTTTGAAAAATGAACAT+GGG - chr4_2:71642387-71642406 Msa0620250:intron 25.0%
! TGAGAGAGAAATGAGTTTTT+GGG + chr4_2:71637952-71637971 None:intergenic 30.0%
! ATGAGAGAGAAATGAGTTTT+TGG + chr4_2:71637953-71637972 None:intergenic 30.0%
GATCTGAATAAGATTAGTGT+TGG - chr4_2:71638343-71638362 Msa0620250:CDS 30.0%
! TGGTTTTTGTTCTAATGTTC+AGG - chr4_2:71638363-71638382 Msa0620250:CDS 30.0%
AAAAACAAAACCTAACCTGT+AGG + chr4_2:71638421-71638440 None:intergenic 30.0%
!!! TCATTCGTTTGTTTTGTTGA+TGG - chr4_2:71638450-71638469 Msa0620250:CDS 30.0%
!!! CATTCGTTTGTTTTGTTGAT+GGG - chr4_2:71638451-71638470 Msa0620250:CDS 30.0%
! AGCTTTTGTAAAATCACAGT+GGG + chr4_2:71638679-71638698 None:intergenic 30.0%
! TAGCTTTTGTAAAATCACAG+TGG + chr4_2:71638680-71638699 None:intergenic 30.0%
!!! TTCCATTTTTTTTGGGAGTT+TGG - chr4_2:71638912-71638931 Msa0620250:intron 30.0%
TTCCAAACTCCCAAAAAAAA+TGG + chr4_2:71638917-71638936 None:intergenic 30.0%
! TAAAAACGAAAAGACTTGGT+TGG - chr4_2:71639567-71639586 Msa0620250:intron 30.0%
CTAACAATGTTACATGATAG+GGG + chr4_2:71639720-71639739 None:intergenic 30.0%
CACTAACAATGTTACATGAT+AGG + chr4_2:71639722-71639741 None:intergenic 30.0%
CATTAAGCCGTTAAATCAAA+TGG + chr4_2:71639765-71639784 None:intergenic 30.0%
TCAAGCTAGAATTTCAATAG+AGG + chr4_2:71639798-71639817 None:intergenic 30.0%
!! TTCTCTTGCTTTTACATCTT+GGG + chr4_2:71639939-71639958 None:intergenic 30.0%
! ACATAAATTTTGGGCTAAGT+AGG - chr4_2:71640061-71640080 Msa0620250:intron 30.0%
! AGAGATTAGCTACCATTATT+TGG + chr4_2:71640282-71640301 None:intergenic 30.0%
TAAAATTCTTGTAGTGACCA+AGG - chr4_2:71640301-71640320 Msa0620250:intron 30.0%
AAAATTCTTGTAGTGACCAA+GGG - chr4_2:71640302-71640321 Msa0620250:intron 30.0%
AAACTAACAGTGATAGATGA+CGG - chr4_2:71640326-71640345 Msa0620250:intron 30.0%
GTGTTCAGTTAAAAACTAGA+AGG - chr4_2:71640356-71640375 Msa0620250:intron 30.0%
TTAAAAACTAGAAGGGTTGT+TGG - chr4_2:71640364-71640383 Msa0620250:intron 30.0%
!!! AGTTTCTTAGAGCTGTTTTT+CGG - chr4_2:71640811-71640830 Msa0620250:intron 30.0%
! AAGAATAACATGATTGACTC+TGG + chr4_2:71641217-71641236 None:intergenic 30.0%
GTGATGTAGAAATAAATTGC+TGG + chr4_2:71641353-71641372 None:intergenic 30.0%
TTGATTACTTCACTTTGTGA+AGG - chr4_2:71641437-71641456 Msa0620250:intron 30.0%
TATTACTTCTCAGATGATGT+GGG - chr4_2:71641460-71641479 Msa0620250:intron 30.0%
TAGACTCTTGAAATGAACAA+CGG - chr4_2:71641516-71641535 Msa0620250:intron 30.0%
TTGAAGTCTTCCACTATTAT+TGG - chr4_2:71641697-71641716 Msa0620250:intron 30.0%
AGGAATTAGAAGATTTGTCT+CGG - chr4_2:71641858-71641877 Msa0620250:intron 30.0%
AAAATCTGATGGTAACACAT+TGG - chr4_2:71642141-71642160 Msa0620250:intron 30.0%
AAATCTGATGGTAACACATT+GGG - chr4_2:71642142-71642161 Msa0620250:intron 30.0%
AAAGATCTCAAGAGTAAAGT+TGG + chr4_2:71642374-71642393 None:intergenic 30.0%
!! GATTTCTAAGGTTTCTTCAT+GGG + chr4_2:71642715-71642734 None:intergenic 30.0%
TCCAAATATACTGTGGAATA+CGG + chr4_2:71642795-71642814 None:intergenic 30.0%
TGAGAAATTTAAGAAGTCCT+TGG - chr4_2:71642818-71642837 Msa0620250:CDS 30.0%
GAGAAATTTAAGAAGTCCTT+GGG - chr4_2:71642819-71642838 Msa0620250:CDS 30.0%
ATATCTAGATGGGAAATAGT+GGG - chr4_2:71643068-71643087 Msa0620250:CDS 30.0%
GTAACTTTGAGCATCAAAAT+TGG - chr4_2:71643184-71643203 Msa0620250:five_prime_UTR 30.0%
! ATGCTTTGTTATGGAGTATG+CGG + chr4_2:71638083-71638102 None:intergenic 35.0%
GAAATCTATTACTCCATCAC+CGG - chr4_2:71638156-71638175 Msa0620250:three_prime_UTR 35.0%
TAAGCATCAACAGCTATCTT+CGG + chr4_2:71638241-71638260 None:intergenic 35.0%
!! CTTTGGAACATTGTGAAATG+TGG - chr4_2:71638494-71638513 Msa0620250:CDS 35.0%
! TTGCATTCTAAGAGTATGCT+TGG + chr4_2:71638767-71638786 None:intergenic 35.0%
!!! TTTTTTGGGAGTTTGGAACT+TGG - chr4_2:71638919-71638938 Msa0620250:intron 35.0%
TCTTCAAATCTTCCTCATGT+TGG + chr4_2:71639084-71639103 None:intergenic 35.0%
CAGTTCAGTTTCTCAAAGAT+CGG + chr4_2:71639139-71639158 None:intergenic 35.0%
ACTGTGCTACAAACATAGTT+CGG - chr4_2:71639214-71639233 Msa0620250:intron 35.0%
ATGTAACATTGTTAGTGCTC+TGG - chr4_2:71639725-71639744 Msa0620250:intron 35.0%
! CTCCCTACCATTTGATTTAA+CGG - chr4_2:71639755-71639774 Msa0620250:intron 35.0%
AGCCGTTAAATCAAATGGTA+GGG + chr4_2:71639760-71639779 None:intergenic 35.0%
AAGCCGTTAAATCAAATGGT+AGG + chr4_2:71639761-71639780 None:intergenic 35.0%
ATCCATAAACCCAATTCAAG+AGG - chr4_2:71639824-71639843 Msa0620250:intron 35.0%
TTCCTCTTGAATTGGGTTTA+TGG + chr4_2:71639829-71639848 None:intergenic 35.0%
ATTCCTCTTCCTCTTGAATT+GGG + chr4_2:71639836-71639855 None:intergenic 35.0%
!! TCTCTTGCTTTTACATCTTG+GGG + chr4_2:71639938-71639957 None:intergenic 35.0%
!! CTTCTCTTGCTTTTACATCT+TGG + chr4_2:71639940-71639959 None:intergenic 35.0%
TCTTTCAATTCACTCCTTCT+AGG + chr4_2:71639979-71639998 None:intergenic 35.0%
AGAAGGAGTGAATTGAAAGA+AGG - chr4_2:71639979-71639998 Msa0620250:intron 35.0%
AAATTCTTGTAGTGACCAAG+GGG - chr4_2:71640303-71640322 Msa0620250:intron 35.0%
AACTAACAGTGATAGATGAC+GGG - chr4_2:71640327-71640346 Msa0620250:intron 35.0%
! TGCTATTTAAGAAGACCTCA+AGG - chr4_2:71640387-71640406 Msa0620250:intron 35.0%
GCTATTTAAGAAGACCTCAA+GGG - chr4_2:71640388-71640407 Msa0620250:intron 35.0%
ACTTTATATTAGTGTGCTGG+TGG - chr4_2:71640527-71640546 Msa0620250:intron 35.0%
!!! AGTTGATTTTGAAATCGGAG+AGG + chr4_2:71640611-71640630 None:intergenic 35.0%
TAAATTTGCAAAAGACGCTG+TGG - chr4_2:71640656-71640675 Msa0620250:intron 35.0%
TTTATAGAACCGAACTGACT+GGG + chr4_2:71640742-71640761 None:intergenic 35.0%
!!! GTAGCTCATTTTTTTGGTTG+AGG + chr4_2:71640781-71640800 None:intergenic 35.0%
!!! GGAACTGTAGCTCATTTTTT+TGG + chr4_2:71640787-71640806 None:intergenic 35.0%
!! AACAGCTCTAAGAAACTGAA+CGG + chr4_2:71640808-71640827 None:intergenic 35.0%
!! TTAGATCTGTTTTTCGGTTC+AGG - chr4_2:71640930-71640949 Msa0620250:intron 35.0%
!! TTTTTCGGTTCAGGTAAGTT+CGG - chr4_2:71640939-71640958 Msa0620250:intron 35.0%
ACCATGGTACTGTATTTGTT+GGG - chr4_2:71641261-71641280 Msa0620250:intron 35.0%
!! AAGCGTTGATAAGCAACTAA+AGG + chr4_2:71641292-71641311 None:intergenic 35.0%
! AATTGCTGGCTATCTACAAA+AGG + chr4_2:71641339-71641358 None:intergenic 35.0%
TTTAAAGAGAGATGGGAAAG+TGG - chr4_2:71641383-71641402 Msa0620250:intron 35.0%
TTAAAGAGAGATGGGAAAGT+GGG - chr4_2:71641384-71641403 Msa0620250:intron 35.0%
GTATTACTTCTCAGATGATG+TGG - chr4_2:71641459-71641478 Msa0620250:intron 35.0%
GCAAAACAGACCAATAATAG+TGG + chr4_2:71641710-71641729 None:intergenic 35.0%
!! AAAAAGTACTCTCTGATGAC+TGG - chr4_2:71641907-71641926 Msa0620250:intron 35.0%
! AAGCTTTATCCAACTAAGTG+GGG + chr4_2:71642012-71642031 None:intergenic 35.0%
! CAAGCTTTATCCAACTAAGT+GGG + chr4_2:71642013-71642032 None:intergenic 35.0%
AATCTGATGGTAACACATTG+GGG - chr4_2:71642143-71642162 Msa0620250:intron 35.0%
CAATATATAGGGAACTGCTT+TGG + chr4_2:71642222-71642241 None:intergenic 35.0%
GGATGTGATATTCATTATGG+AGG - chr4_2:71642272-71642291 Msa0620250:intron 35.0%
TATGCATTCTTCTGCAAAAC+AGG - chr4_2:71642456-71642475 Msa0620250:intron 35.0%
!! GGATTTCTAAGGTTTCTTCA+TGG + chr4_2:71642716-71642735 None:intergenic 35.0%
TTTATTGCAACTGCGAGTTT+GGG + chr4_2:71642738-71642757 None:intergenic 35.0%
ATTTATTGCAACTGCGAGTT+TGG + chr4_2:71642739-71642758 None:intergenic 35.0%
AATATACTGTGGAATACGGA+AGG + chr4_2:71642791-71642810 None:intergenic 35.0%
TCCGTATTCCACAGTATATT+TGG - chr4_2:71642791-71642810 Msa0620250:CDS 35.0%
GTATTCCACAGTATATTTGG+AGG - chr4_2:71642794-71642813 Msa0620250:CDS 35.0%
! TAGCTTGACTTTTGCTTGTA+AGG - chr4_2:71642895-71642914 Msa0620250:CDS 35.0%
TCTAGATATGACGCACAAAA+AGG + chr4_2:71643057-71643076 None:intergenic 35.0%
! TTTTGTGCGTCATATCTAGA+TGG - chr4_2:71643057-71643076 Msa0620250:CDS 35.0%
TTTGTGCGTCATATCTAGAT+GGG - chr4_2:71643058-71643077 Msa0620250:CDS 35.0%
CATATCTAGATGGGAAATAG+TGG - chr4_2:71643067-71643086 Msa0620250:CDS 35.0%
ACACAAGAGTAATTGCAACA+AGG + chr4_2:71643097-71643116 None:intergenic 35.0%
AAACTCATCGAAGAAACCTA+CGG - chr4_2:71643141-71643160 Msa0620250:five_prime_UTR 35.0%
!! TGAGTTTTTGGGCTGCAAAT+GGG + chr4_2:71637941-71637960 None:intergenic 40.0%
!! ATGAGTTTTTGGGCTGCAAA+TGG + chr4_2:71637942-71637961 None:intergenic 40.0%
TATGGAGTATGCGGTTCTTA+GGG + chr4_2:71638074-71638093 None:intergenic 40.0%
TTATGGAGTATGCGGTTCTT+AGG + chr4_2:71638075-71638094 None:intergenic 40.0%
! TTGTGCGTGATGCTTTGTTA+TGG + chr4_2:71638092-71638111 None:intergenic 40.0%
ATTGGGATTATAGAGGACAG+AGG - chr4_2:71638188-71638207 Msa0620250:three_prime_UTR 40.0%
ACAGAGGAAGATAATCCCAT+TGG - chr4_2:71638204-71638223 Msa0620250:three_prime_UTR 40.0%
CAGAGGAAGATAATCCCATT+GGG - chr4_2:71638205-71638224 Msa0620250:three_prime_UTR 40.0%
GCATATGTTTGCCAGAATCA+CGG - chr4_2:71638650-71638669 Msa0620250:CDS 40.0%
AGTGATTATGCAGGAAGCTA+AGG + chr4_2:71638707-71638726 None:intergenic 40.0%
! TTTGGAACTTGGAACATGGA+AGG - chr4_2:71638930-71638949 Msa0620250:intron 40.0%
TTGGAACTTGGAACATGGAA+GGG - chr4_2:71638931-71638950 Msa0620250:intron 40.0%
! GGTTCAGTTAGGACTTTTGA+AGG + chr4_2:71639118-71639137 None:intergenic 40.0%
! TCTCAAAGATCGGTTCAGTT+AGG + chr4_2:71639129-71639148 None:intergenic 40.0%
ACAATGTTACATGATAGGGG+AGG + chr4_2:71639717-71639736 None:intergenic 40.0%
AAACCCAATTCAAGAGGAAG+AGG - chr4_2:71639830-71639849 Msa0620250:intron 40.0%
GATTCCTCTTCCTCTTGAAT+TGG + chr4_2:71639837-71639856 None:intergenic 40.0%
AGGAGTGAATTGAAAGAAGG+TGG - chr4_2:71639982-71640001 Msa0620250:intron 40.0%
! AGGTAGTGGTAGCCAAATAA+TGG - chr4_2:71640267-71640286 Msa0620250:intron 40.0%
! TATCACTGTTAGTTTCCCCT+TGG + chr4_2:71640321-71640340 None:intergenic 40.0%
ATTTAAGAAGACCTCAAGGG+AGG - chr4_2:71640391-71640410 Msa0620250:intron 40.0%
ATCGGAGAGGTTTATTGTTG+TGG + chr4_2:71640598-71640617 None:intergenic 40.0%
!! TTTTGTTTGCCCAGTCAGTT+CGG - chr4_2:71640730-71640749 Msa0620250:intron 40.0%
GTTTATAGAACCGAACTGAC+TGG + chr4_2:71640743-71640762 None:intergenic 40.0%
AGCTAGGTGTGTTCATAGTT+GGG + chr4_2:71640982-71641001 None:intergenic 40.0%
TAGCTAGGTGTGTTCATAGT+TGG + chr4_2:71640983-71641002 None:intergenic 40.0%
ATCTCATGATGCATTCTCCT+TGG - chr4_2:71641113-71641132 Msa0620250:intron 40.0%
AGCATAAACTAATCCGTCCA+AGG + chr4_2:71641133-71641152 None:intergenic 40.0%
CAACAAATACAGTACCATGG+TGG + chr4_2:71641262-71641281 None:intergenic 40.0%
CACCATGGTACTGTATTTGT+TGG - chr4_2:71641260-71641279 Msa0620250:intron 40.0%
! CCATGGTACTGTATTTGTTG+GGG - chr4_2:71641262-71641281 Msa0620250:intron 40.0%
TAAAGAGAGATGGGAAAGTG+GGG - chr4_2:71641385-71641404 Msa0620250:intron 40.0%
TTTATCCAACTAAGTGGGGT+CGG + chr4_2:71642008-71642027 None:intergenic 40.0%
! CCAAGCTTTATCCAACTAAG+TGG + chr4_2:71642014-71642033 None:intergenic 40.0%
CCACTTAGTTGGATAAAGCT+TGG - chr4_2:71642011-71642030 Msa0620250:intron 40.0%
ATACGATCAAGCAGGTATCA+GGG + chr4_2:71642184-71642203 None:intergenic 40.0%
!! TGTAGAGTGGAGTTGATGAT+TGG - chr4_2:71642302-71642321 Msa0620250:intron 40.0%
! ATCGAGAGGTATGTGACTAT+TGG - chr4_2:71642498-71642517 Msa0620250:intron 40.0%
! TCGAGAGGTATGTGACTATT+GGG - chr4_2:71642499-71642518 Msa0620250:intron 40.0%
TATAGAACCTTCCATGAGGA+TGG + chr4_2:71642583-71642602 None:intergenic 40.0%
ACACACTCAATTCTTGAAGC+TGG - chr4_2:71642609-71642628 Msa0620250:intron 40.0%
CACACTCAATTCTTGAAGCT+GGG - chr4_2:71642610-71642629 Msa0620250:intron 40.0%
TAATTCCATCCGGTGAACTT+TGG - chr4_2:71642655-71642674 Msa0620250:intron 40.0%
AATTCCATCCGGTGAACTTT+GGG - chr4_2:71642656-71642675 Msa0620250:intron 40.0%
TTATTGCAACTGCGAGTTTG+GGG + chr4_2:71642737-71642756 None:intergenic 40.0%
CTCAACCTCCAAATATACTG+TGG + chr4_2:71642802-71642821 None:intergenic 40.0%
GCATCAAACAGAAATACCCA+AGG + chr4_2:71642838-71642857 None:intergenic 40.0%
TACTTTCAGAAGCAGCACAA+AGG + chr4_2:71642958-71642977 None:intergenic 40.0%
! TACTCTTGTGTGTTGCTCAA+AGG - chr4_2:71643106-71643125 Msa0620250:exon 40.0%
GCATTATTATTCACAGCCGT+AGG + chr4_2:71643160-71643179 None:intergenic 40.0%
!! TGAGCATCAAAATTGGCTTG+AGG - chr4_2:71643191-71643210 Msa0620250:five_prime_UTR 40.0%
! AATGTGGTGGAGCTAGGAAA+TGG + chr4_2:71637992-71638011 None:intergenic 45.0%
AGGTTGTACTGTGAATGTGG+TGG + chr4_2:71638005-71638024 None:intergenic 45.0%
ACGAGGTTGTACTGTGAATG+TGG + chr4_2:71638008-71638027 None:intergenic 45.0%
TCGTGCTAGATTCGCCATTT+GGG + chr4_2:71638038-71638057 None:intergenic 45.0%
ATCGTGCTAGATTCGCCATT+TGG + chr4_2:71638039-71638058 None:intergenic 45.0%
! TTCTGTTGCAAAAGCGCGTT+CGG + chr4_2:71638131-71638150 None:intergenic 45.0%
CTATTACTCCATCACCGGAT+CGG - chr4_2:71638161-71638180 Msa0620250:three_prime_UTR 45.0%
TATTACTCCATCACCGGATC+GGG - chr4_2:71638162-71638181 Msa0620250:three_prime_UTR 45.0%
TAATCCCAATTCACCCGATC+CGG + chr4_2:71638178-71638197 None:intergenic 45.0%
CGGGTGAATTGGGATTATAG+AGG - chr4_2:71638181-71638200 Msa0620250:three_prime_UTR 45.0%
AGATAATCCCATTGGGTCAG+TGG - chr4_2:71638212-71638231 Msa0620250:three_prime_UTR 45.0%
GATAGCTGTTGATGCTTACG+TGG - chr4_2:71638243-71638262 Msa0620250:three_prime_UTR 45.0%
TCGCTGGTCAAGTTCATGTT+TGG - chr4_2:71638281-71638300 Msa0620250:exon 45.0%
CGCTGGTCAAGTTCATGTTT+GGG - chr4_2:71638282-71638301 Msa0620250:exon 45.0%
GGTCAAGTTCATGTTTGGGA+TGG - chr4_2:71638286-71638305 Msa0620250:exon 45.0%
! TTTGGGATGGTGCTTCTGTT+TGG - chr4_2:71638299-71638318 Msa0620250:CDS 45.0%
! TTGGTCTTCTCCTACAGGTT+AGG - chr4_2:71638408-71638427 Msa0620250:CDS 45.0%
AGCTTCCTGCATAATCACTG+TGG - chr4_2:71638708-71638727 Msa0620250:intron 45.0%
GCTTCCTGCATAATCACTGT+GGG - chr4_2:71638709-71638728 Msa0620250:intron 45.0%
TTCACCCACAGTGATTATGC+AGG + chr4_2:71638716-71638735 None:intergenic 45.0%
GAGTATGCTTGGTATCACTG+TGG + chr4_2:71638756-71638775 None:intergenic 45.0%
! GGAGTTTGGAACTTGGAACA+TGG - chr4_2:71638926-71638945 Msa0620250:intron 45.0%
AACTTGGAACATGGAAGGGA+GGG - chr4_2:71638935-71638954 Msa0620250:intron 45.0%
!! GAGGGTACTATACCAACATG+AGG - chr4_2:71639069-71639088 Msa0620250:intron 45.0%
CATGAAAGCAGGGAACTTTG+AGG + chr4_2:71639331-71639350 None:intergenic 45.0%
TGGTTATCGGCATGAAAGCA+GGG + chr4_2:71639341-71639360 None:intergenic 45.0%
ATGGTTATCGGCATGAAAGC+AGG + chr4_2:71639342-71639361 None:intergenic 45.0%
AGAGGAAGAGGAATCAACAG+AGG - chr4_2:71639842-71639861 Msa0620250:intron 45.0%
TATTTGGCTACCACTACCTG+CGG + chr4_2:71640266-71640285 None:intergenic 45.0%
!! TAACAGTGATAGATGACGGG+AGG - chr4_2:71640330-71640349 Msa0620250:intron 45.0%
AATTACACTCACCTCCCTTG+AGG + chr4_2:71639640-71639659 None:intergenic 45.0%
TGGGCAAACAAAACAGCAAC+AGG + chr4_2:71640723-71640742 None:intergenic 45.0%
! TAGTTGGGGTGTTCACAGTT+GGG + chr4_2:71640870-71640889 None:intergenic 45.0%
! ATAGTTGGGGTGTTCACAGT+TGG + chr4_2:71640871-71640890 None:intergenic 45.0%
CATGATGCATTCTCCTTGGA+CGG - chr4_2:71641117-71641136 Msa0620250:intron 45.0%
!! ACATGATTGACTCTGGAGTC+TGG + chr4_2:71641210-71641229 None:intergenic 45.0%
!! CATGGTGGCTTCTAAAGCAT+GGG + chr4_2:71641247-71641266 None:intergenic 45.0%
CCCCAACAAATACAGTACCA+TGG + chr4_2:71641265-71641284 None:intergenic 45.0%
! GAAGCACTCTGTTCTGTTGT+TGG - chr4_2:71641644-71641663 Msa0620250:intron 45.0%
! TGGTCTGTTTTGCTTGCATG+AGG - chr4_2:71641717-71641736 Msa0620250:intron 45.0%
ACGCAGAAGGTTACAAGATG+AGG + chr4_2:71641746-71641765 None:intergenic 45.0%
AATTGGAAGAGAGACGCAGA+AGG + chr4_2:71641759-71641778 None:intergenic 45.0%
CATAATCCTCCATTGCTGAG+AGG - chr4_2:71642073-71642092 Msa0620250:intron 45.0%
GATGGTAACACATTGGGGTA+AGG - chr4_2:71642148-71642167 Msa0620250:intron 45.0%
CATTGGGGTAAGGAAAGTAG+TGG - chr4_2:71642158-71642177 Msa0620250:intron 45.0%
CATACGATCAAGCAGGTATC+AGG + chr4_2:71642185-71642204 None:intergenic 45.0%
AGACTTGCATACGATCAAGC+AGG + chr4_2:71642192-71642211 None:intergenic 45.0%
!!! TGGAGGTGTTTTCTGTAGAG+TGG - chr4_2:71642289-71642308 Msa0620250:intron 45.0%
! CGAGAGGTATGTGACTATTG+GGG - chr4_2:71642500-71642519 Msa0620250:intron 45.0%
GCAGGATCTTAACAGGCTAT+AGG + chr4_2:71642526-71642545 None:intergenic 45.0%
CGATAGTGCAGGATCTTAAC+AGG + chr4_2:71642533-71642552 None:intergenic 45.0%
ATCGAGCCAGAGGTCATTAT+TGG - chr4_2:71642549-71642568 Msa0620250:intron 45.0%
TCGAGCCAGAGGTCATTATT+GGG - chr4_2:71642550-71642569 Msa0620250:intron 45.0%
CCACTATAGAACCTTCCATG+AGG + chr4_2:71642587-71642606 None:intergenic 45.0%
CCTCATGGAAGGTTCTATAG+TGG - chr4_2:71642584-71642603 Msa0620250:intron 45.0%
GATGGAATTATCCTTCCTGG+TGG + chr4_2:71642645-71642664 None:intergenic 45.0%
CCAGGAAGGATAATTCCATC+CGG - chr4_2:71642645-71642664 Msa0620250:intron 45.0%
ATTACCTGCCCAAAGTTCAC+CGG + chr4_2:71642667-71642686 None:intergenic 45.0%
GTAATCCAGCCAAGTTTGTG+AGG - chr4_2:71642682-71642701 Msa0620250:intron 45.0%
AAAGTCCTCACAAACTTGGC+TGG + chr4_2:71642690-71642709 None:intergenic 45.0%
GGTCAAAGTCCTCACAAACT+TGG + chr4_2:71642694-71642713 None:intergenic 45.0%
TGCGAGTTTGGGGATTTCTA+AGG + chr4_2:71642727-71642746 None:intergenic 45.0%
TGGAATACGGAAGGAACTCA+TGG + chr4_2:71642782-71642801 None:intergenic 45.0%
! TCTTGTGTGTTGCTCAAAGG+AGG - chr4_2:71643109-71643128 Msa0620250:exon 45.0%
!!! TTTATATATTTTTAATTATG+AGG - chr4_2:71639050-71639069 Msa0620250:intron 5.0%
!!! TTATATATTTTTAATTATGA+GGG - chr4_2:71639051-71639070 Msa0620250:intron 5.0%
!!! AAATTATTATTTTAACTTTT+AGG - chr4_2:71639614-71639633 Msa0620250:intron 5.0%
!!! AATTATTATTTTAACTTTTA+GGG - chr4_2:71639615-71639634 Msa0620250:intron 5.0%
!!! TAATAATTTTTAAAAATCAA+GGG + chr4_2:71639657-71639676 None:intergenic 5.0%
!!! ATAATAATTTTTAAAAATCA+AGG + chr4_2:71639658-71639677 None:intergenic 5.0%
GGAGCTAGGAAATGGAAGAG+TGG + chr4_2:71637984-71638003 None:intergenic 50.0%
! ACTGTGAATGTGGTGGAGCT+AGG + chr4_2:71637998-71638017 None:intergenic 50.0%
ACCTCGTTCTCTCTCCCAAA+TGG - chr4_2:71638021-71638040 Msa0620250:three_prime_UTR 50.0%
! TGCGGTTCTTAGGGCTTTGT+TGG + chr4_2:71638065-71638084 None:intergenic 50.0%
CGTTCGGATGAAGCTAGTTG+CGG + chr4_2:71638115-71638134 None:intergenic 50.0%
ATCACCGGATCGGGTGAATT+GGG - chr4_2:71638171-71638190 Msa0620250:three_prime_UTR 50.0%
TGCTTACGTGGCACCTAATG+TGG - chr4_2:71638255-71638274 Msa0620250:three_prime_UTR 50.0%
TGACCAGCGAGAACCACATT+AGG + chr4_2:71638271-71638290 None:intergenic 50.0%
TCACCACGAAGAACACAACC+AGG + chr4_2:71638325-71638344 None:intergenic 50.0%
ACCTGTAGGAGAAGACCAAG+CGG + chr4_2:71638407-71638426 None:intergenic 50.0%
CTGTGGGTGAATCGTGATTC+TGG - chr4_2:71638725-71638744 Msa0620250:intron 50.0%
GAACTTGGAACATGGAAGGG+AGG - chr4_2:71638934-71638953 Msa0620250:intron 50.0%
AACATGGAAGGGAGGGCTTT+GGG - chr4_2:71638942-71638961 Msa0620250:intron 50.0%
!! TAGGGGAGGTGTTTGTCACA+GGG + chr4_2:71639703-71639722 None:intergenic 50.0%
!! ATAGGGGAGGTGTTTGTCAC+AGG + chr4_2:71639704-71639723 None:intergenic 50.0%
TAGGCGTGATGAGCGTAGTA+TGG - chr4_2:71640080-71640099 Msa0620250:intron 50.0%
AGGCGTGATGAGCGTAGTAT+GGG - chr4_2:71640081-71640100 Msa0620250:intron 50.0%
AGTATGGGCGATGAGGGAAA+CGG - chr4_2:71640096-71640115 Msa0620250:intron 50.0%
GAGTTAACTACCGCAGGTAG+TGG - chr4_2:71640253-71640272 Msa0620250:intron 50.0%
TGCAAAAGACGCTGTGGTGA+CGG - chr4_2:71640662-71640681 Msa0620250:intron 50.0%
GTGACAAACTGACGAGAGCT+TGG - chr4_2:71640692-71640711 Msa0620250:intron 50.0%
!!! TTTTTGGTTGAGGTGCGCTG+TGG + chr4_2:71640771-71640790 None:intergenic 50.0%
ATCTCTTGATGCTGAGCCTC+TGG - chr4_2:71641177-71641196 Msa0620250:intron 50.0%
!! TGGCTTCTAAAGCATGGGAG+TGG + chr4_2:71641242-71641261 None:intergenic 50.0%
!! CCATGGTGGCTTCTAAAGCA+TGG + chr4_2:71641248-71641267 None:intergenic 50.0%
!! CCATGCTTTAGAAGCCACCA+TGG - chr4_2:71641245-71641264 Msa0620250:intron 50.0%
GTACTCTCTGATGACTGGTG+TGG - chr4_2:71641912-71641931 Msa0620250:intron 50.0%
AATCCTCCATTGCTGAGAGG+AGG - chr4_2:71642076-71642095 Msa0620250:intron 50.0%
TTCACACCTCCTCTCAGCAA+TGG + chr4_2:71642085-71642104 None:intergenic 50.0%
CGATTGAAGTCTCAGCTGGA+AGG + chr4_2:71642482-71642501 None:intergenic 50.0%
CTCTCGATTGAAGTCTCAGC+TGG + chr4_2:71642486-71642505 None:intergenic 50.0%
CAGCTGAGACTTCAATCGAG+AGG - chr4_2:71642484-71642503 Msa0620250:intron 50.0%
TGCTGCCCAATAATGACCTC+TGG + chr4_2:71642558-71642577 None:intergenic 50.0%
CAGCATTCCATCCTCATGGA+AGG - chr4_2:71642573-71642592 Msa0620250:intron 50.0%
CCGGATGGAATTATCCTTCC+TGG + chr4_2:71642648-71642667 None:intergenic 50.0%
GCCATTTGGGAGAGAGAACG+AGG + chr4_2:71638025-71638044 None:intergenic 55.0%
CAATTCACCCGATCCGGTGA+TGG + chr4_2:71638172-71638191 None:intergenic 55.0%
CATCACCGGATCGGGTGAAT+TGG - chr4_2:71638170-71638189 Msa0620250:three_prime_UTR 55.0%
TCGGAAGCCACTGACCCAAT+GGG + chr4_2:71638222-71638241 None:intergenic 55.0%
TTCGGAAGCCACTGACCCAA+TGG + chr4_2:71638223-71638242 None:intergenic 55.0%
GCACCTAATGTGGTTCTCGC+TGG - chr4_2:71638265-71638284 Msa0620250:three_prime_UTR 55.0%
GATGGTGCTTCTGTTTGGCC+TGG - chr4_2:71638304-71638323 Msa0620250:CDS 55.0%
TGGCCTGGTTGTGTTCTTCG+TGG - chr4_2:71638319-71638338 Msa0620250:CDS 55.0%
GCTGTGTTCTTCATGCCGCT+TGG - chr4_2:71638389-71638408 Msa0620250:CDS 55.0%
ACAGTGGGTCACCGTGATTC+TGG + chr4_2:71638664-71638683 None:intergenic 55.0%
GAACATGGAAGGGAGGGCTT+TGG - chr4_2:71638941-71638960 Msa0620250:intron 55.0%
ACATGGAAGGGAGGGCTTTG+GGG - chr4_2:71638943-71638962 Msa0620250:intron 55.0%
! CTTTGGGGGAAGGGATGAGA+GGG - chr4_2:71638958-71638977 Msa0620250:intron 55.0%
TGAGCGTAGTATGGGCGATG+AGG - chr4_2:71640089-71640108 Msa0620250:intron 55.0%
GAGCGTAGTATGGGCGATGA+GGG - chr4_2:71640090-71640109 Msa0620250:intron 55.0%
GTATGGGCGATGAGGGAAAC+GGG - chr4_2:71640097-71640116 Msa0620250:intron 55.0%
AGCAGCGAGTTAACTACCGC+AGG - chr4_2:71640247-71640266 Msa0620250:intron 55.0%
GGAGTCTGGCATTCTACCAG+AGG + chr4_2:71641196-71641215 None:intergenic 55.0%
CTCTCTGATGACTGGTGTGG+TGG - chr4_2:71641915-71641934 Msa0620250:intron 55.0%
TCTGATGACTGGTGTGGTGG+TGG - chr4_2:71641918-71641937 Msa0620250:intron 55.0%
ACACCTCCTCTCAGCAATGG+AGG + chr4_2:71642082-71642101 None:intergenic 55.0%
TAGGGAACTGCTTTGGCTGC+TGG + chr4_2:71642215-71642234 None:intergenic 55.0%
ATCCTGCACTATCGAGCCAG+AGG - chr4_2:71642539-71642558 Msa0620250:intron 55.0%
TGGGCAGCATTCCATCCTCA+TGG - chr4_2:71642569-71642588 Msa0620250:intron 55.0%
GGTCAGTAGTTCCACCAGGA+AGG - chr4_2:71642631-71642650 Msa0620250:intron 55.0%
! GCCGCTTGGTCTTCTCCTAC+AGG - chr4_2:71638403-71638422 Msa0620250:CDS 60.0%
! CATGGAAGGGAGGGCTTTGG+GGG - chr4_2:71638944-71638963 Msa0620250:intron 60.0%
!! AAGGGAGGGCTTTGGGGGAA+GGG - chr4_2:71638949-71638968 Msa0620250:intron 60.0%
!! GCTTTGGGGGAAGGGATGAG+AGG - chr4_2:71638957-71638976 Msa0620250:intron 60.0%
GTTGAGGTGCGCTGTGGTTC+AGG + chr4_2:71640765-71640784 None:intergenic 60.0%
GAGAGATGGGAAAGTGGGGC+TGG - chr4_2:71641389-71641408 Msa0620250:intron 60.0%
GCTAGCCGACCCCACTTAGT+TGG - chr4_2:71642000-71642019 Msa0620250:intron 60.0%
! GACCTCTGGCTCGATAGTGC+AGG + chr4_2:71642544-71642563 None:intergenic 60.0%
GCTGGGTCAGTAGTTCCACC+AGG - chr4_2:71642627-71642646 Msa0620250:intron 60.0%
CCTGCCCAAAGTTCACCGGA+TGG + chr4_2:71642663-71642682 None:intergenic 60.0%
CCATCCGGTGAACTTTGGGC+AGG - chr4_2:71642660-71642679 Msa0620250:intron 60.0%
!! GAAGGGAGGGCTTTGGGGGA+AGG - chr4_2:71638948-71638967 Msa0620250:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 71637886 71643264 71637886 ID=Msa0620250;Name=Msa0620250
chr4_2 mRNA 71637886 71643264 71637886 ID=Msa0620250-mRNA-1;Parent=Msa0620250;Name=Msa0620250-mRNA-1;_AED=0.04;_eAED=0.04;_QI=154|1|1|1|1|1|2|410|253
chr4_2 exon 71637886 71638672 71637886 ID=Msa0620250-mRNA-1:exon:21220;Parent=Msa0620250-mRNA-1
chr4_2 exon 71642726 71643264 71642726 ID=Msa0620250-mRNA-1:exon:21219;Parent=Msa0620250-mRNA-1
chr4_2 five_prime_UTR 71643111 71643264 71643111 ID=Msa0620250-mRNA-1:five_prime_utr;Parent=Msa0620250-mRNA-1
chr4_2 CDS 71642726 71643110 71642726 ID=Msa0620250-mRNA-1:cds;Parent=Msa0620250-mRNA-1
chr4_2 CDS 71638296 71638672 71638296 ID=Msa0620250-mRNA-1:cds;Parent=Msa0620250-mRNA-1
chr4_2 three_prime_UTR 71637886 71638295 71637886 ID=Msa0620250-mRNA-1:three_prime_utr;Parent=Msa0620250-mRNA-1
Gene Sequence

>Msa0620250

ATGGCGAATCTAGCACGATTTACCAACAAAGCCCTAAGAACCGCATACTCCATAACAAAGCATCACGCACAACCGCAACTAGCTTCATCCGAACGCGCTTTTGCAACAGAAGCTGCGAAATCTATTACTCCATCACCGGATCGGGTGAATTGGGATTATAGAGGACAGAGGAAGATAATCCCATTGGGTCAGTGGCTTCCGAAGATAGCTGTTGATGCTTACGTGGCACCTAATGTGGTTCTCGCTGGTCAAGTTCATGTTTGGGATGGTGCTTCTGTTTGGCCTGGTTGTGTTCTTCGTGGTGATCTGAATAAGATTAGTGTTGGTTTTTGTTCTAATGTTCAGGAACGCTGTGTTCTTCATGCCGCTTGGTCTTCTCCTACAGGCCTTCCAGCTGAGACTTCAATCGAGAGGTATGTGACTATTGGGGCCTATAGCCTGTTAAGATCCTGCACTATCGAGCCAGAGGTCATTATTGGGCAGCATTCCATCCTCATGGAAGGTTCTATAGTGGAGACACACTCAATTCTTGAAGCTGGGTCAGTAGTTCCACCAGGAAGGATAATTCCATCCGGTGAACTTTGGGCAGGTAATCCAGCCAAGTTTGTGAGGACTTTGACCCATGAAGAAACCTTAGAAATCCCCAAACTCGCAGTTGCAATAAATGATTTAAGCAAAGATCATTACCATGAGTTCCTTCCGTATTCCACAGTATATTTGGAGGTTGAGAAATTTAAGAAGTCCTTGGGTATTTCTGTTTGA
Protein sequence

>Msa0620250

MANLARFTNKALRTAYSITKHHAQPQLASSERAFATEAAKSITPSPDRVNWDYRGQRKIIPLGQWLPKIAVDAYVAPNVVLAGQVHVWDGASVWPGCVLRGDLNKISVGFCSNVQERCVLHAAWSSPTGLPAETSIERYVTIGAYSLLRSCTIEPEVIIGQHSILMEGSIVETHSILEAGSVVPPGRIIPSGELWAGNPAKFVRTLTHEETLEIPKLAVAINDLSKDHYHEFLPYSTVYLEVEKFKKSLGISV*