AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1133010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1133010 MtrunA17_Chr8g0386291 99.209 253 2 0 1 253 1 253 0.0 520
Msa1133010 MtrunA17_Chr1g0155361 37.264 212 126 2 37 241 17 228 1.26e-44 151
Msa1133010 MtrunA17_Chr3g0141721 39.378 193 113 2 57 249 42 230 2.05e-40 140
Msa1133010 MtrunA17_Chr5g0404561 33.766 231 137 3 32 250 6 232 7.82e-40 139
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1133010 AT3G48680.1 73.518 253 65 1 3 253 4 256 5.43e-139 391
Msa1133010 AT5G63510.1 80.342 234 35 1 31 253 19 252 6.25e-138 388
Msa1133010 AT5G63510.2 71.648 261 36 2 31 253 19 279 2.05e-130 370
Msa1133010 AT5G66510.1 39.691 194 113 1 56 249 42 231 1.77e-43 148
Msa1133010 AT1G19580.1 39.175 194 114 1 56 249 42 231 1.09e-41 144
Msa1133010 AT1G47260.1 36.041 197 126 0 35 231 21 217 3.05e-40 140
Msa1133010 AT5G66510.2 37.561 205 113 2 56 249 42 242 3.86e-40 140
Msa1133010 AT1G19580.2 39.568 139 84 0 56 194 42 180 5.66e-30 112

Find 110 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATGGAGTATGCGGTTCTT+AGG 0.229283 7_3:+85941449 None:intergenic
TCCGTATTCCACAGTATATT+TGG 0.234805 7_3:-85936729 Msa1133010:CDS
ATTTATTGCAACTGCGAGTT+TGG 0.267482 7_3:+85936784 None:intergenic
ATCGAGCCAGAGGTCATTAT+TGG 0.270806 7_3:-85936971 Msa1133010:CDS
GTAACTTTGAGCATCAAAAT+TGG 0.273209 7_3:-85936336 Msa1133010:three_prime_UTR
CGCTGGTCAAGTTCATGTTT+GGG 0.293136 7_3:-85941239 Msa1133010:CDS
TCGCTGGTCAAGTTCATGTT+TGG 0.306862 7_3:-85941240 Msa1133010:CDS
CATCACCGGATCGGGTGAAT+TGG 0.308512 7_3:-85941351 Msa1133010:CDS
CCGGATGGAATTATCCTTCC+TGG 0.321372 7_3:+85936875 None:intergenic
TCGAGAGGTATGTGACTATT+GGG 0.332114 7_3:-85937021 Msa1133010:CDS
TGCGAGTTTGGGGATTTCTA+AGG 0.332354 7_3:+85936796 None:intergenic
TTTATTGCAACTGCGAGTTT+GGG 0.333438 7_3:+85936785 None:intergenic
GGATTTCTAAGGTTTCTTCA+TGG 0.334369 7_3:+85936807 None:intergenic
ATCGTGCTAGATTCGCCATT+TGG 0.346266 7_3:+85941485 None:intergenic
TTGTGCGTGATGCTTTGTTA+TGG 0.360343 7_3:+85941432 None:intergenic
ATCGAGAGGTATGTGACTAT+TGG 0.363480 7_3:-85937022 Msa1133010:CDS
AATTCCATCCGGTGAACTTT+GGG 0.365557 7_3:-85936864 Msa1133010:CDS
TCTAGATATGACGCACAAAA+AGG 0.371246 7_3:+85936466 None:intergenic
CGATAGTGCAGGATCTTAAC+AGG 0.372381 7_3:+85936990 None:intergenic
TTCTGTTGCAAAAGCGCGTT+CGG 0.384026 7_3:+85941393 None:intergenic
TTTGGGATGGTGCTTCTGTT+TGG 0.394146 7_3:-85941222 Msa1133010:CDS
TAATTCCATCCGGTGAACTT+TGG 0.399601 7_3:-85936865 Msa1133010:CDS
GAGAAATTTAAGAAGTCCTT+GGG 0.405985 7_3:-85936701 Msa1133010:CDS
TGCGGTTCTTAGGGCTTTGT+TGG 0.406364 7_3:+85941459 None:intergenic
GATTTCTAAGGTTTCTTCAT+GGG 0.407398 7_3:+85936808 None:intergenic
TCGTGCTAGATTCGCCATTT+GGG 0.416771 7_3:+85941486 None:intergenic
TGAGAAATTTAAGAAGTCCT+TGG 0.422995 7_3:-85936702 Msa1133010:CDS
GCCGCTTGGTCTTCTCCTAC+AGG 0.443345 7_3:-85941118 Msa1133010:intron
ATCACCGGATCGGGTGAATT+GGG 0.444045 7_3:-85941350 Msa1133010:CDS
CATATCTAGATGGGAAATAG+TGG 0.449007 7_3:-85936453 Msa1133010:three_prime_UTR
TCCAAATATACTGTGGAATA+CGG 0.450864 7_3:+85936728 None:intergenic
TATGGAGTATGCGGTTCTTA+GGG 0.453815 7_3:+85941450 None:intergenic
GATGGTGCTTCTGTTTGGCC+TGG 0.458679 7_3:-85941217 Msa1133010:CDS
GGTCAAAGTCCTCACAAACT+TGG 0.460378 7_3:+85936829 None:intergenic
GCAGGATCTTAACAGGCTAT+AGG 0.461030 7_3:+85936997 None:intergenic
ACACACTCAATTCTTGAAGC+TGG 0.465246 7_3:-85936911 Msa1133010:CDS
TATTACTCCATCACCGGATC+GGG 0.470199 7_3:-85941359 Msa1133010:CDS
TGACCAGCGAGAACCACATT+AGG 0.477831 7_3:+85941253 None:intergenic
GCTGTGTTCTTCATGCCGCT+TGG 0.481268 7_3:-85941132 Msa1133010:CDS
CTCTCGATTGAAGTCTCAGC+TGG 0.481721 7_3:+85937037 None:intergenic
TCGAGCCAGAGGTCATTATT+GGG 0.484978 7_3:-85936970 Msa1133010:CDS
AAAGTCCTCACAAACTTGGC+TGG 0.485332 7_3:+85936833 None:intergenic
TAATCCCAATTCACCCGATC+CGG 0.490619 7_3:+85941346 None:intergenic
TGCTGCCCAATAATGACCTC+TGG 0.493950 7_3:+85936965 None:intergenic
AATGTGGTGGAGCTAGGAAA+TGG 0.499166 7_3:+85941532 None:intergenic
TTTGTGCGTCATATCTAGAT+GGG 0.503688 7_3:-85936462 Msa1133010:three_prime_UTR
ACCTCGTTCTCTCTCCCAAA+TGG 0.508035 7_3:-85941500 Msa1133010:exon
TTCGGAAGCCACTGACCCAA+TGG 0.512785 7_3:+85941301 None:intergenic
AGGGGTACATAAAAGATTGT+GGG 0.515538 7_3:-85941645 None:intergenic
CAATTCACCCGATCCGGTGA+TGG 0.515623 7_3:+85941352 None:intergenic
GCACCTAATGTGGTTCTCGC+TGG 0.515982 7_3:-85941256 Msa1133010:CDS
CCTCATGGAAGGTTCTATAG+TGG 0.516544 7_3:-85936936 Msa1133010:CDS
CACACTCAATTCTTGAAGCT+GGG 0.520187 7_3:-85936910 Msa1133010:CDS
TACTCTTGTGTGTTGCTCAA+AGG 0.521274 7_3:-85936414 Msa1133010:three_prime_UTR
TAAGCATCAACAGCTATCTT+CGG 0.524311 7_3:+85941283 None:intergenic
CTATTACTCCATCACCGGAT+CGG 0.535138 7_3:-85941360 Msa1133010:CDS
TCTTGTGTGTTGCTCAAAGG+AGG 0.535781 7_3:-85936411 Msa1133010:three_prime_UTR
GACCTCTGGCTCGATAGTGC+AGG 0.537220 7_3:+85936979 None:intergenic
TCGGAAGCCACTGACCCAAT+GGG 0.538002 7_3:+85941302 None:intergenic
TGGCCTGGTTGTGTTCTTCG+TGG 0.540218 7_3:-85941202 Msa1133010:CDS
TGGGCAGCATTCCATCCTCA+TGG 0.542081 7_3:-85936951 Msa1133010:CDS
TATAGAACCTTCCATGAGGA+TGG 0.545483 7_3:+85936940 None:intergenic
CCATCCGGTGAACTTTGGGC+AGG 0.548069 7_3:-85936860 Msa1133010:CDS
ACAGAGGAAGATAATCCCAT+TGG 0.551861 7_3:-85941317 Msa1133010:CDS
GTATTCCACAGTATATTTGG+AGG 0.552628 7_3:-85936726 Msa1133010:CDS
TAGGGGTACATAAAAGATTG+TGG 0.554589 7_3:-85941646 None:intergenic
CAGAGGAAGATAATCCCATT+GGG 0.563728 7_3:-85941316 Msa1133010:CDS
AGATAATCCCATTGGGTCAG+TGG 0.566753 7_3:-85941309 Msa1133010:CDS
TCACCACGAAGAACACAACC+AGG 0.574612 7_3:+85941199 None:intergenic
GGTCAAGTTCATGTTTGGGA+TGG 0.578896 7_3:-85941235 Msa1133010:CDS
GATCTGAATAAGATTAGTGT+TGG 0.581880 7_3:-85941178 Msa1133010:CDS
GCATTATTATTCACAGCCGT+AGG 0.582111 7_3:+85936363 None:intergenic
GAAATCTATTACTCCATCAC+CGG 0.585979 7_3:-85941365 Msa1133010:CDS
TGAGCATCAAAATTGGCTTG+AGG 0.589291 7_3:-85936329 Msa1133010:three_prime_UTR
ATTACCTGCCCAAAGTTCAC+CGG 0.593632 7_3:+85936856 None:intergenic
TGCTTACGTGGCACCTAATG+TGG 0.594957 7_3:-85941266 Msa1133010:CDS
GCCATTTGGGAGAGAGAACG+AGG 0.596660 7_3:+85941499 None:intergenic
CCAGGAAGGATAATTCCATC+CGG 0.597542 7_3:-85936875 Msa1133010:CDS
CGATTGAAGTCTCAGCTGGA+AGG 0.598226 7_3:+85937041 None:intergenic
AAACTCATCGAAGAAACCTA+CGG 0.599693 7_3:-85936379 Msa1133010:three_prime_UTR
TTATTGCAACTGCGAGTTTG+GGG 0.604356 7_3:+85936786 None:intergenic
CAGCATTCCATCCTCATGGA+AGG 0.605878 7_3:-85936947 Msa1133010:CDS
GGAGCTAGGAAATGGAAGAG+TGG 0.606166 7_3:+85941540 None:intergenic
GGTCAGTAGTTCCACCAGGA+AGG 0.611863 7_3:-85936889 Msa1133010:CDS
ACTGTGAATGTGGTGGAGCT+AGG 0.611891 7_3:+85941526 None:intergenic
AATATACTGTGGAATACGGA+AGG 0.614961 7_3:+85936732 None:intergenic
ATATCTAGATGGGAAATAGT+GGG 0.617555 7_3:-85936452 Msa1133010:three_prime_UTR
CGTTCGGATGAAGCTAGTTG+CGG 0.617624 7_3:+85941409 None:intergenic
ATTGGGATTATAGAGGACAG+AGG 0.617723 7_3:-85941333 Msa1133010:CDS
TGGAATACGGAAGGAACTCA+TGG 0.622332 7_3:+85936741 None:intergenic
GATAGCTGTTGATGCTTACG+TGG 0.629649 7_3:-85941278 Msa1133010:CDS
GTAATCCAGCCAAGTTTGTG+AGG 0.634420 7_3:-85936838 Msa1133010:CDS
GGGGTACATAAAAGATTGTG+GGG 0.638703 7_3:-85941644 None:intergenic
CTCAACCTCCAAATATACTG+TGG 0.643535 7_3:+85936721 None:intergenic
CCTGCCCAAAGTTCACCGGA+TGG 0.644025 7_3:+85936860 None:intergenic
CGAGAGGTATGTGACTATTG+GGG 0.644184 7_3:-85937020 Msa1133010:CDS
ATGCTTTGTTATGGAGTATG+CGG 0.647285 7_3:+85941441 None:intergenic
ATCCTGCACTATCGAGCCAG+AGG 0.649233 7_3:-85936981 Msa1133010:CDS
TACTTTCAGAAGCAGCACAA+AGG 0.651887 7_3:+85936565 None:intergenic
CGGGTGAATTGGGATTATAG+AGG 0.652482 7_3:-85941340 Msa1133010:CDS
GCTGGGTCAGTAGTTCCACC+AGG 0.658261 7_3:-85936893 Msa1133010:CDS
CAGCTGAGACTTCAATCGAG+AGG 0.666782 7_3:-85937036 Msa1133010:CDS
GATGGAATTATCCTTCCTGG+TGG 0.673623 7_3:+85936878 None:intergenic
ACGAGGTTGTACTGTGAATG+TGG 0.676665 7_3:+85941516 None:intergenic
GCATCAAACAGAAATACCCA+AGG 0.677187 7_3:+85936685 None:intergenic
ACACAAGAGTAATTGCAACA+AGG 0.709340 7_3:+85936426 None:intergenic
ACCTGTAGGAGAAGACCAAG+CGG 0.712136 7_3:+85941117 None:intergenic
GGGTACATAAAAGATTGTGG+GGG 0.715124 7_3:-85941643 None:intergenic
CCACTATAGAACCTTCCATG+AGG 0.731073 7_3:+85936936 None:intergenic
AGGTTGTACTGTGAATGTGG+TGG 0.758492 7_3:+85941519 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAATGTTTAAAACAAAT+TGG + chr7_3:85940169-85940188 None:intergenic 10.0%
!! AGATGATTAATATTATATGA+TGG + chr7_3:85937214-85937233 None:intergenic 15.0%
!!! ATTTATTGTTCCATTTTTTT+TGG - chr7_3:85937297-85937316 Msa1133010:intron 15.0%
!!! TTTATTGTTCCATTTTTTTT+GGG - chr7_3:85937298-85937317 Msa1133010:intron 15.0%
!!! TATTTTGATAAATGAAAACA+TGG + chr7_3:85937754-85937773 None:intergenic 15.0%
!! ATCAAAATATACAATCAAAA+TGG - chr7_3:85937765-85937784 Msa1133010:intron 15.0%
!! TCAAAATATACAATCAAAAT+GGG - chr7_3:85937766-85937785 Msa1133010:intron 15.0%
!!! AAATTTGTTTATATTGATTG+AGG - chr7_3:85937884-85937903 Msa1133010:intron 15.0%
!! TCTTGAATGAAAATATTTAT+GGG - chr7_3:85937920-85937939 Msa1133010:intron 15.0%
!!! ATGATGATATACATAAATTT+TGG - chr7_3:85938444-85938463 Msa1133010:intron 15.0%
!!! TGATGATATACATAAATTTT+GGG - chr7_3:85938445-85938464 Msa1133010:intron 15.0%
!! AATTGTTAACATAAAAGTTA+GGG + chr7_3:85938823-85938842 None:intergenic 15.0%
!! AAATTGTTAACATAAAAGTT+AGG + chr7_3:85938824-85938843 None:intergenic 15.0%
!! AATTTAAGAGAAAGATATAA+TGG + chr7_3:85939035-85939054 None:intergenic 15.0%
!! TAGAAAATGAAAATAGAAAA+TGG - chr7_3:85939986-85940005 Msa1133010:intron 15.0%
!! ATATTCAAAGACAATATATA+GGG + chr7_3:85940626-85940645 None:intergenic 15.0%
!! TATATTCAAAGACAATATAT+AGG + chr7_3:85940627-85940646 None:intergenic 15.0%
!! TGTGAAATGTATAAATTACT+AGG - chr7_3:85936965-85936984 Msa1133010:CDS 20.0%
!! ATGTATAAATTACTAGGATT+TGG - chr7_3:85936971-85936990 Msa1133010:CDS 20.0%
!! TGTATAAATTACTAGGATTT+GGG - chr7_3:85936972-85936991 Msa1133010:CDS 20.0%
!!! TGTTTTCATAAAGAATGATA+AGG - chr7_3:85937408-85937427 Msa1133010:intron 20.0%
!!! GTTTTCATAAAGAATGATAA+GGG - chr7_3:85937409-85937428 Msa1133010:intron 20.0%
!! AAGATTTGAAGAAATTATCT+AGG - chr7_3:85937485-85937504 Msa1133010:intron 20.0%
!! ATAAATGAAAACATGGTTAT+CGG + chr7_3:85937747-85937766 None:intergenic 20.0%
!!! ATAATTTTTCATCATCATCA+TGG + chr7_3:85937811-85937830 None:intergenic 20.0%
!!! TGATGATGATGAAAAATTAT+TGG - chr7_3:85937811-85937830 Msa1133010:intron 20.0%
!! GTCTTGAATGAAAATATTTA+TGG - chr7_3:85937919-85937938 Msa1133010:intron 20.0%
!!! ATTTTAAAAACGAAAAGACT+TGG - chr7_3:85937956-85937975 Msa1133010:intron 20.0%
!!! TAATTTTTAAAAATCAAGGG+AGG + chr7_3:85938047-85938066 None:intergenic 20.0%
!!! ACAACTCTTATTTTTCATTT+CGG + chr7_3:85938519-85938538 None:intergenic 20.0%
!! TAACTAAATAGAAATAGTTG+GGG + chr7_3:85939277-85939296 None:intergenic 20.0%
!! CTAACTAAATAGAAATAGTT+GGG + chr7_3:85939278-85939297 None:intergenic 20.0%
!! TCTAACTAAATAGAAATAGT+TGG + chr7_3:85939279-85939298 None:intergenic 20.0%
!! TATTCTAAATAGAAATAGCT+AGG + chr7_3:85939391-85939410 None:intergenic 20.0%
!! GATCATAAATGTTTACTTAA+AGG + chr7_3:85939455-85939474 None:intergenic 20.0%
!!! TGAAAGTATATGCTTAAAAA+AGG + chr7_3:85939486-85939505 None:intergenic 20.0%
!!! ATTCATTTTTTAAAGAGAGA+TGG - chr7_3:85939768-85939787 Msa1133010:intron 20.0%
!!! TTCATTTTTTAAAGAGAGAT+GGG - chr7_3:85939769-85939788 Msa1133010:intron 20.0%
!! ATTACTTCATAGTAACTATT+TGG + chr7_3:85940070-85940089 None:intergenic 20.0%
!! TAAATCCATAGACTATAATA+AGG - chr7_3:85940231-85940250 Msa1133010:intron 20.0%
!! TAATTCCTTATTATAGTCTA+TGG + chr7_3:85940239-85940258 None:intergenic 20.0%
!!! AGGATTATGCTATTTAATTA+AGG + chr7_3:85940455-85940474 None:intergenic 20.0%
!! CTTTGAATATATATCAGTAT+TGG - chr7_3:85940636-85940655 Msa1133010:intron 20.0%
!!! ATATATCAGTATTGGAAATT+AGG - chr7_3:85940644-85940663 Msa1133010:intron 20.0%
!!! AAAGAATTTTGTTTACGCTT+TGG - chr7_3:85936869-85936888 Msa1133010:CDS 25.0%
! AACATATGCTAAGAGTAATA+GGG + chr7_3:85937032-85937051 None:intergenic 25.0%
! AAACATATGCTAAGAGTAAT+AGG + chr7_3:85937033-85937052 None:intergenic 25.0%
! TTAATAAGTAGCATGTTCTA+AGG + chr7_3:85937245-85937264 None:intergenic 25.0%
! AAAACAATCTCTCAAATAAG+GGG + chr7_3:85937394-85937413 None:intergenic 25.0%
! GAAAACAATCTCTCAAATAA+GGG + chr7_3:85937395-85937414 None:intergenic 25.0%
! TGAAAACAATCTCTCAAATA+AGG + chr7_3:85937396-85937415 None:intergenic 25.0%
! CATTGTATGCATAAAAAAGA+TGG + chr7_3:85937682-85937701 None:intergenic 25.0%
!!! CATCTTTTTTATGCATACAA+TGG - chr7_3:85937680-85937699 Msa1133010:intron 25.0%
! TCAAAATGGGATATTTATCT+AGG - chr7_3:85937779-85937798 Msa1133010:intron 25.0%
! ACTAACAATGTTACATGATA+GGG + chr7_3:85938114-85938133 None:intergenic 25.0%
! TGTTAATTGAAAAACCTAGA+AGG - chr7_3:85938355-85938374 Msa1133010:intron 25.0%
! AAATACTTGAACACTACTTA+CGG - chr7_3:85938414-85938433 Msa1133010:intron 25.0%
!!! CAACTCTTATTTTTCATTTC+GGG + chr7_3:85938518-85938537 None:intergenic 25.0%
! TGTTCAGTTAAAAACTAGAA+GGG - chr7_3:85938750-85938769 Msa1133010:intron 25.0%
! AATACTTTATATTAGTGTGC+TGG - chr7_3:85938917-85938936 Msa1133010:intron 25.0%
!!! GCTAAAGTTGATTTTGAAAT+CGG + chr7_3:85939009-85939028 None:intergenic 25.0%
!!! TTTTTCGGTTCATTTAAGTT+TGG - chr7_3:85939219-85939238 Msa1133010:intron 25.0%
!!! AGTTTCTTAGATCTGTTTTT+CGG - chr7_3:85939317-85939336 Msa1133010:intron 25.0%
! TCTGTACATATTAACTATGT+GGG + chr7_3:85940281-85940300 None:intergenic 25.0%
! TTCTGTACATATTAACTATG+TGG + chr7_3:85940282-85940301 None:intergenic 25.0%
!! TTATTACAGTTTGCACTTTT+TGG - chr7_3:85940339-85940358 Msa1133010:intron 25.0%
!!! TGTCTTATTTGAAAATCTGA+TGG - chr7_3:85940523-85940542 Msa1133010:intron 25.0%
! TTAGGATGTGATATTCATTA+TGG - chr7_3:85940662-85940681 Msa1133010:intron 25.0%
!! AGATCTTTGAAAAATGAACA+TGG - chr7_3:85940779-85940798 Msa1133010:intron 25.0%
!! GATCTTTGAAAAATGAACAT+GGG - chr7_3:85940780-85940799 Msa1133010:intron 25.0%
! TGAGAGAGAAATGAGTTTTT+GGG + chr7_3:85936344-85936363 None:intergenic 30.0%
! ATGAGAGAGAAATGAGTTTT+TGG + chr7_3:85936345-85936364 None:intergenic 30.0%
GATCTGAATAAGATTAGTGT+TGG - chr7_3:85936735-85936754 Msa1133010:CDS 30.0%
! TGGTTTTTGTTCTAATGTTC+AGG - chr7_3:85936755-85936774 Msa1133010:CDS 30.0%
AAAAACAAAACCTAACCTGT+AGG + chr7_3:85936813-85936832 None:intergenic 30.0%
!!! TCATTCGTTTGTTTTGTTGA+TGG - chr7_3:85936842-85936861 Msa1133010:CDS 30.0%
!!! CATTCGTTTGTTTTGTTGAT+GGG - chr7_3:85936843-85936862 Msa1133010:CDS 30.0%
! AGCTTTTGTAAAATCACAGT+GGG + chr7_3:85937072-85937091 None:intergenic 30.0%
! TAGCTTTTGTAAAATCACAG+TGG + chr7_3:85937073-85937092 None:intergenic 30.0%
!!! TTCCATTTTTTTTGGGAGTT+TGG - chr7_3:85937305-85937324 Msa1133010:intron 30.0%
TTCCAAACTCCCAAAAAAAA+TGG + chr7_3:85937310-85937329 None:intergenic 30.0%
! TAAAAACGAAAAGACTTGGT+TGG - chr7_3:85937960-85937979 Msa1133010:intron 30.0%
CTAACAATGTTACATGATAG+GGG + chr7_3:85938113-85938132 None:intergenic 30.0%
CACTAACAATGTTACATGAT+AGG + chr7_3:85938115-85938134 None:intergenic 30.0%
CATTAAGCCGTTAAATCAAA+TGG + chr7_3:85938158-85938177 None:intergenic 30.0%
TCAAGCTAGAATTTCAATAG+AGG + chr7_3:85938191-85938210 None:intergenic 30.0%
!! TTCTCTTGCTTTTACATCTT+GGG + chr7_3:85938332-85938351 None:intergenic 30.0%
! ACATAAATTTTGGGCTAAGT+AGG - chr7_3:85938454-85938473 Msa1133010:intron 30.0%
! AGAGATTAGCTACCATTATT+TGG + chr7_3:85938675-85938694 None:intergenic 30.0%
TAAAATTCTTGTAGTGACCA+AGG - chr7_3:85938694-85938713 Msa1133010:intron 30.0%
AAAATTCTTGTAGTGACCAA+GGG - chr7_3:85938695-85938714 Msa1133010:intron 30.0%
AAACTAACAGTGATAGATGA+CGG - chr7_3:85938719-85938738 Msa1133010:intron 30.0%
GTGTTCAGTTAAAAACTAGA+AGG - chr7_3:85938749-85938768 Msa1133010:intron 30.0%
TTAAAAACTAGAAGGGTTGT+TGG - chr7_3:85938757-85938776 Msa1133010:intron 30.0%
!!! AGTTTCTTAGAGCTGTTTTT+CGG - chr7_3:85939204-85939223 Msa1133010:intron 30.0%
! AAGAATAACATGATTGACTC+TGG + chr7_3:85939610-85939629 None:intergenic 30.0%
GTGATGTAGAAATAAATTGC+TGG + chr7_3:85939746-85939765 None:intergenic 30.0%
TTGATTACTTCACTTTGTGA+AGG - chr7_3:85939830-85939849 Msa1133010:intron 30.0%
TATTACTTCTCAGATGATGT+GGG - chr7_3:85939853-85939872 Msa1133010:intron 30.0%
TAGACTCTTGAAATGAACAA+CGG - chr7_3:85939909-85939928 Msa1133010:intron 30.0%
TTGAAGTCTTCCACTATTAT+TGG - chr7_3:85940090-85940109 Msa1133010:intron 30.0%
AGGAATTAGAAGATTTGTCT+CGG - chr7_3:85940251-85940270 Msa1133010:intron 30.0%
AAAATCTGATGGTAACACAT+TGG - chr7_3:85940534-85940553 Msa1133010:intron 30.0%
AAATCTGATGGTAACACATT+GGG - chr7_3:85940535-85940554 Msa1133010:intron 30.0%
AAAGATCTCAAGAGTAAAGT+TGG + chr7_3:85940767-85940786 None:intergenic 30.0%
!! GATTTCTAAGGTTTCTTCAT+GGG + chr7_3:85941108-85941127 None:intergenic 30.0%
TCCAAATATACTGTGGAATA+CGG + chr7_3:85941188-85941207 None:intergenic 30.0%
TGAGAAATTTAAGAAGTCCT+TGG - chr7_3:85941211-85941230 Msa1133010:CDS 30.0%
GAGAAATTTAAGAAGTCCTT+GGG - chr7_3:85941212-85941231 Msa1133010:CDS 30.0%
ATATCTAGATGGGAAATAGT+GGG - chr7_3:85941461-85941480 Msa1133010:CDS 30.0%
GTAACTTTGAGCATCAAAAT+TGG - chr7_3:85941577-85941596 Msa1133010:five_prime_UTR 30.0%
! ATGCTTTGTTATGGAGTATG+CGG + chr7_3:85936475-85936494 None:intergenic 35.0%
GAAATCTATTACTCCATCAC+CGG - chr7_3:85936548-85936567 Msa1133010:three_prime_UTR 35.0%
TAAGCATCAACAGCTATCTT+CGG + chr7_3:85936633-85936652 None:intergenic 35.0%
!! CTTTGGAACATTGTGAAATG+TGG - chr7_3:85936886-85936905 Msa1133010:CDS 35.0%
! TTGCATTCTAAGAGTATGCT+TGG + chr7_3:85937160-85937179 None:intergenic 35.0%
!!! TTTTTTGGGAGTTTGGAACT+TGG - chr7_3:85937312-85937331 Msa1133010:intron 35.0%
TCTTCAAATCTTCCTCATGT+TGG + chr7_3:85937477-85937496 None:intergenic 35.0%
CAGTTCAGTTTCTCAAAGAT+CGG + chr7_3:85937532-85937551 None:intergenic 35.0%
ACTGTGCTACAAACATAGTT+CGG - chr7_3:85937607-85937626 Msa1133010:intron 35.0%
ATGTAACATTGTTAGTGCTC+TGG - chr7_3:85938118-85938137 Msa1133010:intron 35.0%
! CTCCCTACCATTTGATTTAA+CGG - chr7_3:85938148-85938167 Msa1133010:intron 35.0%
AGCCGTTAAATCAAATGGTA+GGG + chr7_3:85938153-85938172 None:intergenic 35.0%
AAGCCGTTAAATCAAATGGT+AGG + chr7_3:85938154-85938173 None:intergenic 35.0%
ATCCATAAACCCAATTCAAG+AGG - chr7_3:85938217-85938236 Msa1133010:intron 35.0%
TTCCTCTTGAATTGGGTTTA+TGG + chr7_3:85938222-85938241 None:intergenic 35.0%
ATTCCTCTTCCTCTTGAATT+GGG + chr7_3:85938229-85938248 None:intergenic 35.0%
!! TCTCTTGCTTTTACATCTTG+GGG + chr7_3:85938331-85938350 None:intergenic 35.0%
!! CTTCTCTTGCTTTTACATCT+TGG + chr7_3:85938333-85938352 None:intergenic 35.0%
TCTTTCAATTCACTCCTTCT+AGG + chr7_3:85938372-85938391 None:intergenic 35.0%
AGAAGGAGTGAATTGAAAGA+AGG - chr7_3:85938372-85938391 Msa1133010:intron 35.0%
AAATTCTTGTAGTGACCAAG+GGG - chr7_3:85938696-85938715 Msa1133010:intron 35.0%
AACTAACAGTGATAGATGAC+GGG - chr7_3:85938720-85938739 Msa1133010:intron 35.0%
! TGCTATTTAAGAAGACCTCA+AGG - chr7_3:85938780-85938799 Msa1133010:intron 35.0%
GCTATTTAAGAAGACCTCAA+GGG - chr7_3:85938781-85938800 Msa1133010:intron 35.0%
ACTTTATATTAGTGTGCTGG+TGG - chr7_3:85938920-85938939 Msa1133010:intron 35.0%
!!! AGTTGATTTTGAAATCGGAG+AGG + chr7_3:85939004-85939023 None:intergenic 35.0%
TAAATTTGCAAAAGACGCTG+TGG - chr7_3:85939049-85939068 Msa1133010:intron 35.0%
TTTATAGAACCGAACTGACT+GGG + chr7_3:85939135-85939154 None:intergenic 35.0%
!!! GTAGCTCATTTTTTTGGTTG+AGG + chr7_3:85939174-85939193 None:intergenic 35.0%
!!! GGAACTGTAGCTCATTTTTT+TGG + chr7_3:85939180-85939199 None:intergenic 35.0%
!! AACAGCTCTAAGAAACTGAA+CGG + chr7_3:85939201-85939220 None:intergenic 35.0%
!! TTAGATCTGTTTTTCGGTTC+AGG - chr7_3:85939323-85939342 Msa1133010:intron 35.0%
!! TTTTTCGGTTCAGGTAAGTT+CGG - chr7_3:85939332-85939351 Msa1133010:intron 35.0%
ACCATGGTACTGTATTTGTT+GGG - chr7_3:85939654-85939673 Msa1133010:intron 35.0%
!! AAGCGTTGATAAGCAACTAA+AGG + chr7_3:85939685-85939704 None:intergenic 35.0%
! AATTGCTGGCTATCTACAAA+AGG + chr7_3:85939732-85939751 None:intergenic 35.0%
TTTAAAGAGAGATGGGAAAG+TGG - chr7_3:85939776-85939795 Msa1133010:intron 35.0%
TTAAAGAGAGATGGGAAAGT+GGG - chr7_3:85939777-85939796 Msa1133010:intron 35.0%
GTATTACTTCTCAGATGATG+TGG - chr7_3:85939852-85939871 Msa1133010:intron 35.0%
GCAAAACAGACCAATAATAG+TGG + chr7_3:85940103-85940122 None:intergenic 35.0%
!! AAAAAGTACTCTCTGATGAC+TGG - chr7_3:85940300-85940319 Msa1133010:intron 35.0%
! AAGCTTTATCCAACTAAGTG+GGG + chr7_3:85940405-85940424 None:intergenic 35.0%
! CAAGCTTTATCCAACTAAGT+GGG + chr7_3:85940406-85940425 None:intergenic 35.0%
AATCTGATGGTAACACATTG+GGG - chr7_3:85940536-85940555 Msa1133010:intron 35.0%
CAATATATAGGGAACTGCTT+TGG + chr7_3:85940615-85940634 None:intergenic 35.0%
GGATGTGATATTCATTATGG+AGG - chr7_3:85940665-85940684 Msa1133010:intron 35.0%
TATGCATTCTTCTGCAAAAC+AGG - chr7_3:85940849-85940868 Msa1133010:intron 35.0%
!! GGATTTCTAAGGTTTCTTCA+TGG + chr7_3:85941109-85941128 None:intergenic 35.0%
TTTATTGCAACTGCGAGTTT+GGG + chr7_3:85941131-85941150 None:intergenic 35.0%
ATTTATTGCAACTGCGAGTT+TGG + chr7_3:85941132-85941151 None:intergenic 35.0%
AATATACTGTGGAATACGGA+AGG + chr7_3:85941184-85941203 None:intergenic 35.0%
TCCGTATTCCACAGTATATT+TGG - chr7_3:85941184-85941203 Msa1133010:CDS 35.0%
GTATTCCACAGTATATTTGG+AGG - chr7_3:85941187-85941206 Msa1133010:CDS 35.0%
! TAGCTTGACTTTTGCTTGTA+AGG - chr7_3:85941288-85941307 Msa1133010:CDS 35.0%
TCTAGATATGACGCACAAAA+AGG + chr7_3:85941450-85941469 None:intergenic 35.0%
! TTTTGTGCGTCATATCTAGA+TGG - chr7_3:85941450-85941469 Msa1133010:CDS 35.0%
TTTGTGCGTCATATCTAGAT+GGG - chr7_3:85941451-85941470 Msa1133010:CDS 35.0%
CATATCTAGATGGGAAATAG+TGG - chr7_3:85941460-85941479 Msa1133010:CDS 35.0%
ACACAAGAGTAATTGCAACA+AGG + chr7_3:85941490-85941509 None:intergenic 35.0%
AAACTCATCGAAGAAACCTA+CGG - chr7_3:85941534-85941553 Msa1133010:five_prime_UTR 35.0%
!! TGAGTTTTTGGGCTGCAAAT+GGG + chr7_3:85936333-85936352 None:intergenic 40.0%
!! ATGAGTTTTTGGGCTGCAAA+TGG + chr7_3:85936334-85936353 None:intergenic 40.0%
TATGGAGTATGCGGTTCTTA+GGG + chr7_3:85936466-85936485 None:intergenic 40.0%
TTATGGAGTATGCGGTTCTT+AGG + chr7_3:85936467-85936486 None:intergenic 40.0%
! TTGTGCGTGATGCTTTGTTA+TGG + chr7_3:85936484-85936503 None:intergenic 40.0%
ATTGGGATTATAGAGGACAG+AGG - chr7_3:85936580-85936599 Msa1133010:three_prime_UTR 40.0%
ACAGAGGAAGATAATCCCAT+TGG - chr7_3:85936596-85936615 Msa1133010:three_prime_UTR 40.0%
CAGAGGAAGATAATCCCATT+GGG - chr7_3:85936597-85936616 Msa1133010:three_prime_UTR 40.0%
GCATATGTTTGCCAGAATCA+CGG - chr7_3:85937043-85937062 Msa1133010:CDS 40.0%
AGTGATTATGCAGGAAGCTA+AGG + chr7_3:85937100-85937119 None:intergenic 40.0%
! TTTGGAACTTGGAACATGGA+AGG - chr7_3:85937323-85937342 Msa1133010:intron 40.0%
TTGGAACTTGGAACATGGAA+GGG - chr7_3:85937324-85937343 Msa1133010:intron 40.0%
! GGTTCAGTTAGGACTTTTGA+AGG + chr7_3:85937511-85937530 None:intergenic 40.0%
! TCTCAAAGATCGGTTCAGTT+AGG + chr7_3:85937522-85937541 None:intergenic 40.0%
ACAATGTTACATGATAGGGG+AGG + chr7_3:85938110-85938129 None:intergenic 40.0%
AAACCCAATTCAAGAGGAAG+AGG - chr7_3:85938223-85938242 Msa1133010:intron 40.0%
GATTCCTCTTCCTCTTGAAT+TGG + chr7_3:85938230-85938249 None:intergenic 40.0%
AGGAGTGAATTGAAAGAAGG+TGG - chr7_3:85938375-85938394 Msa1133010:intron 40.0%
! AGGTAGTGGTAGCCAAATAA+TGG - chr7_3:85938660-85938679 Msa1133010:intron 40.0%
! TATCACTGTTAGTTTCCCCT+TGG + chr7_3:85938714-85938733 None:intergenic 40.0%
ATTTAAGAAGACCTCAAGGG+AGG - chr7_3:85938784-85938803 Msa1133010:intron 40.0%
ATCGGAGAGGTTTATTGTTG+TGG + chr7_3:85938991-85939010 None:intergenic 40.0%
!! TTTTGTTTGCCCAGTCAGTT+CGG - chr7_3:85939123-85939142 Msa1133010:intron 40.0%
GTTTATAGAACCGAACTGAC+TGG + chr7_3:85939136-85939155 None:intergenic 40.0%
AGCTAGGTGTGTTCATAGTT+GGG + chr7_3:85939375-85939394 None:intergenic 40.0%
TAGCTAGGTGTGTTCATAGT+TGG + chr7_3:85939376-85939395 None:intergenic 40.0%
ATCTCATGATGCATTCTCCT+TGG - chr7_3:85939506-85939525 Msa1133010:intron 40.0%
AGCATAAACTAATCCGTCCA+AGG + chr7_3:85939526-85939545 None:intergenic 40.0%
CAACAAATACAGTACCATGG+TGG + chr7_3:85939655-85939674 None:intergenic 40.0%
CACCATGGTACTGTATTTGT+TGG - chr7_3:85939653-85939672 Msa1133010:intron 40.0%
! CCATGGTACTGTATTTGTTG+GGG - chr7_3:85939655-85939674 Msa1133010:intron 40.0%
TAAAGAGAGATGGGAAAGTG+GGG - chr7_3:85939778-85939797 Msa1133010:intron 40.0%
TTTATCCAACTAAGTGGGGT+CGG + chr7_3:85940401-85940420 None:intergenic 40.0%
! CCAAGCTTTATCCAACTAAG+TGG + chr7_3:85940407-85940426 None:intergenic 40.0%
CCACTTAGTTGGATAAAGCT+TGG - chr7_3:85940404-85940423 Msa1133010:intron 40.0%
ATACGATCAAGCAGGTATCA+GGG + chr7_3:85940577-85940596 None:intergenic 40.0%
!! TGTAGAGTGGAGTTGATGAT+TGG - chr7_3:85940695-85940714 Msa1133010:intron 40.0%
! ATCGAGAGGTATGTGACTAT+TGG - chr7_3:85940891-85940910 Msa1133010:intron 40.0%
! TCGAGAGGTATGTGACTATT+GGG - chr7_3:85940892-85940911 Msa1133010:intron 40.0%
TATAGAACCTTCCATGAGGA+TGG + chr7_3:85940976-85940995 None:intergenic 40.0%
ACACACTCAATTCTTGAAGC+TGG - chr7_3:85941002-85941021 Msa1133010:intron 40.0%
CACACTCAATTCTTGAAGCT+GGG - chr7_3:85941003-85941022 Msa1133010:intron 40.0%
TAATTCCATCCGGTGAACTT+TGG - chr7_3:85941048-85941067 Msa1133010:intron 40.0%
AATTCCATCCGGTGAACTTT+GGG - chr7_3:85941049-85941068 Msa1133010:intron 40.0%
TTATTGCAACTGCGAGTTTG+GGG + chr7_3:85941130-85941149 None:intergenic 40.0%
CTCAACCTCCAAATATACTG+TGG + chr7_3:85941195-85941214 None:intergenic 40.0%
GCATCAAACAGAAATACCCA+AGG + chr7_3:85941231-85941250 None:intergenic 40.0%
TACTTTCAGAAGCAGCACAA+AGG + chr7_3:85941351-85941370 None:intergenic 40.0%
! TACTCTTGTGTGTTGCTCAA+AGG - chr7_3:85941499-85941518 Msa1133010:exon 40.0%
GCATTATTATTCACAGCCGT+AGG + chr7_3:85941553-85941572 None:intergenic 40.0%
!! TGAGCATCAAAATTGGCTTG+AGG - chr7_3:85941584-85941603 Msa1133010:five_prime_UTR 40.0%
! AATGTGGTGGAGCTAGGAAA+TGG + chr7_3:85936384-85936403 None:intergenic 45.0%
AGGTTGTACTGTGAATGTGG+TGG + chr7_3:85936397-85936416 None:intergenic 45.0%
ACGAGGTTGTACTGTGAATG+TGG + chr7_3:85936400-85936419 None:intergenic 45.0%
TCGTGCTAGATTCGCCATTT+GGG + chr7_3:85936430-85936449 None:intergenic 45.0%
ATCGTGCTAGATTCGCCATT+TGG + chr7_3:85936431-85936450 None:intergenic 45.0%
! TTCTGTTGCAAAAGCGCGTT+CGG + chr7_3:85936523-85936542 None:intergenic 45.0%
CTATTACTCCATCACCGGAT+CGG - chr7_3:85936553-85936572 Msa1133010:three_prime_UTR 45.0%
TATTACTCCATCACCGGATC+GGG - chr7_3:85936554-85936573 Msa1133010:three_prime_UTR 45.0%
TAATCCCAATTCACCCGATC+CGG + chr7_3:85936570-85936589 None:intergenic 45.0%
CGGGTGAATTGGGATTATAG+AGG - chr7_3:85936573-85936592 Msa1133010:three_prime_UTR 45.0%
AGATAATCCCATTGGGTCAG+TGG - chr7_3:85936604-85936623 Msa1133010:three_prime_UTR 45.0%
GATAGCTGTTGATGCTTACG+TGG - chr7_3:85936635-85936654 Msa1133010:three_prime_UTR 45.0%
TCGCTGGTCAAGTTCATGTT+TGG - chr7_3:85936673-85936692 Msa1133010:exon 45.0%
CGCTGGTCAAGTTCATGTTT+GGG - chr7_3:85936674-85936693 Msa1133010:exon 45.0%
GGTCAAGTTCATGTTTGGGA+TGG - chr7_3:85936678-85936697 Msa1133010:exon 45.0%
! TTTGGGATGGTGCTTCTGTT+TGG - chr7_3:85936691-85936710 Msa1133010:CDS 45.0%
! TTGGTCTTCTCCTACAGGTT+AGG - chr7_3:85936800-85936819 Msa1133010:CDS 45.0%
AGCTTCCTGCATAATCACTG+TGG - chr7_3:85937101-85937120 Msa1133010:intron 45.0%
GCTTCCTGCATAATCACTGT+GGG - chr7_3:85937102-85937121 Msa1133010:intron 45.0%
TTCACCCACAGTGATTATGC+AGG + chr7_3:85937109-85937128 None:intergenic 45.0%
GAGTATGCTTGGTATCACTG+TGG + chr7_3:85937149-85937168 None:intergenic 45.0%
! GGAGTTTGGAACTTGGAACA+TGG - chr7_3:85937319-85937338 Msa1133010:intron 45.0%
AACTTGGAACATGGAAGGGA+GGG - chr7_3:85937328-85937347 Msa1133010:intron 45.0%
!! GAGGGTACTATACCAACATG+AGG - chr7_3:85937462-85937481 Msa1133010:intron 45.0%
CATGAAAGCAGGGAACTTTG+AGG + chr7_3:85937724-85937743 None:intergenic 45.0%
TGGTTATCGGCATGAAAGCA+GGG + chr7_3:85937734-85937753 None:intergenic 45.0%
ATGGTTATCGGCATGAAAGC+AGG + chr7_3:85937735-85937754 None:intergenic 45.0%
AGAGGAAGAGGAATCAACAG+AGG - chr7_3:85938235-85938254 Msa1133010:intron 45.0%
TATTTGGCTACCACTACCTG+CGG + chr7_3:85938659-85938678 None:intergenic 45.0%
!! TAACAGTGATAGATGACGGG+AGG - chr7_3:85938723-85938742 Msa1133010:intron 45.0%
AATTACACTCACCTCCCTTG+AGG + chr7_3:85938033-85938052 None:intergenic 45.0%
TGGGCAAACAAAACAGCAAC+AGG + chr7_3:85939116-85939135 None:intergenic 45.0%
! TAGTTGGGGTGTTCACAGTT+GGG + chr7_3:85939263-85939282 None:intergenic 45.0%
! ATAGTTGGGGTGTTCACAGT+TGG + chr7_3:85939264-85939283 None:intergenic 45.0%
CATGATGCATTCTCCTTGGA+CGG - chr7_3:85939510-85939529 Msa1133010:intron 45.0%
!! ACATGATTGACTCTGGAGTC+TGG + chr7_3:85939603-85939622 None:intergenic 45.0%
!! CATGGTGGCTTCTAAAGCAT+GGG + chr7_3:85939640-85939659 None:intergenic 45.0%
CCCCAACAAATACAGTACCA+TGG + chr7_3:85939658-85939677 None:intergenic 45.0%
! GAAGCACTCTGTTCTGTTGT+TGG - chr7_3:85940037-85940056 Msa1133010:intron 45.0%
! TGGTCTGTTTTGCTTGCATG+AGG - chr7_3:85940110-85940129 Msa1133010:intron 45.0%
ACGCAGAAGGTTACAAGATG+AGG + chr7_3:85940139-85940158 None:intergenic 45.0%
AATTGGAAGAGAGACGCAGA+AGG + chr7_3:85940152-85940171 None:intergenic 45.0%
CATAATCCTCCATTGCTGAG+AGG - chr7_3:85940466-85940485 Msa1133010:intron 45.0%
GATGGTAACACATTGGGGTA+AGG - chr7_3:85940541-85940560 Msa1133010:intron 45.0%
CATTGGGGTAAGGAAAGTAG+TGG - chr7_3:85940551-85940570 Msa1133010:intron 45.0%
CATACGATCAAGCAGGTATC+AGG + chr7_3:85940578-85940597 None:intergenic 45.0%
AGACTTGCATACGATCAAGC+AGG + chr7_3:85940585-85940604 None:intergenic 45.0%
!!! TGGAGGTGTTTTCTGTAGAG+TGG - chr7_3:85940682-85940701 Msa1133010:intron 45.0%
! CGAGAGGTATGTGACTATTG+GGG - chr7_3:85940893-85940912 Msa1133010:intron 45.0%
GCAGGATCTTAACAGGCTAT+AGG + chr7_3:85940919-85940938 None:intergenic 45.0%
CGATAGTGCAGGATCTTAAC+AGG + chr7_3:85940926-85940945 None:intergenic 45.0%
ATCGAGCCAGAGGTCATTAT+TGG - chr7_3:85940942-85940961 Msa1133010:intron 45.0%
TCGAGCCAGAGGTCATTATT+GGG - chr7_3:85940943-85940962 Msa1133010:intron 45.0%
CCACTATAGAACCTTCCATG+AGG + chr7_3:85940980-85940999 None:intergenic 45.0%
CCTCATGGAAGGTTCTATAG+TGG - chr7_3:85940977-85940996 Msa1133010:intron 45.0%
GATGGAATTATCCTTCCTGG+TGG + chr7_3:85941038-85941057 None:intergenic 45.0%
CCAGGAAGGATAATTCCATC+CGG - chr7_3:85941038-85941057 Msa1133010:intron 45.0%
ATTACCTGCCCAAAGTTCAC+CGG + chr7_3:85941060-85941079 None:intergenic 45.0%
GTAATCCAGCCAAGTTTGTG+AGG - chr7_3:85941075-85941094 Msa1133010:intron 45.0%
AAAGTCCTCACAAACTTGGC+TGG + chr7_3:85941083-85941102 None:intergenic 45.0%
GGTCAAAGTCCTCACAAACT+TGG + chr7_3:85941087-85941106 None:intergenic 45.0%
TGCGAGTTTGGGGATTTCTA+AGG + chr7_3:85941120-85941139 None:intergenic 45.0%
TGGAATACGGAAGGAACTCA+TGG + chr7_3:85941175-85941194 None:intergenic 45.0%
! TCTTGTGTGTTGCTCAAAGG+AGG - chr7_3:85941502-85941521 Msa1133010:exon 45.0%
!!! TTTATATATTTTTAATTATG+AGG - chr7_3:85937443-85937462 Msa1133010:intron 5.0%
!!! TTATATATTTTTAATTATGA+GGG - chr7_3:85937444-85937463 Msa1133010:intron 5.0%
!!! AAATTATTATTTTAACTTTT+AGG - chr7_3:85938007-85938026 Msa1133010:intron 5.0%
!!! AATTATTATTTTAACTTTTA+GGG - chr7_3:85938008-85938027 Msa1133010:intron 5.0%
!!! TAATAATTTTTAAAAATCAA+GGG + chr7_3:85938050-85938069 None:intergenic 5.0%
!!! ATAATAATTTTTAAAAATCA+AGG + chr7_3:85938051-85938070 None:intergenic 5.0%
GGAGCTAGGAAATGGAAGAG+TGG + chr7_3:85936376-85936395 None:intergenic 50.0%
! ACTGTGAATGTGGTGGAGCT+AGG + chr7_3:85936390-85936409 None:intergenic 50.0%
ACCTCGTTCTCTCTCCCAAA+TGG - chr7_3:85936413-85936432 Msa1133010:three_prime_UTR 50.0%
! TGCGGTTCTTAGGGCTTTGT+TGG + chr7_3:85936457-85936476 None:intergenic 50.0%
CGTTCGGATGAAGCTAGTTG+CGG + chr7_3:85936507-85936526 None:intergenic 50.0%
ATCACCGGATCGGGTGAATT+GGG - chr7_3:85936563-85936582 Msa1133010:three_prime_UTR 50.0%
TGCTTACGTGGCACCTAATG+TGG - chr7_3:85936647-85936666 Msa1133010:three_prime_UTR 50.0%
TGACCAGCGAGAACCACATT+AGG + chr7_3:85936663-85936682 None:intergenic 50.0%
TCACCACGAAGAACACAACC+AGG + chr7_3:85936717-85936736 None:intergenic 50.0%
ACCTGTAGGAGAAGACCAAG+CGG + chr7_3:85936799-85936818 None:intergenic 50.0%
CTGTGGGTGAATCGTGATTC+TGG - chr7_3:85937118-85937137 Msa1133010:intron 50.0%
GAACTTGGAACATGGAAGGG+AGG - chr7_3:85937327-85937346 Msa1133010:intron 50.0%
AACATGGAAGGGAGGGCTTT+GGG - chr7_3:85937335-85937354 Msa1133010:intron 50.0%
!! TAGGGGAGGTGTTTGTCACA+GGG + chr7_3:85938096-85938115 None:intergenic 50.0%
!! ATAGGGGAGGTGTTTGTCAC+AGG + chr7_3:85938097-85938116 None:intergenic 50.0%
TAGGCGTGATGAGCGTAGTA+TGG - chr7_3:85938473-85938492 Msa1133010:intron 50.0%
AGGCGTGATGAGCGTAGTAT+GGG - chr7_3:85938474-85938493 Msa1133010:intron 50.0%
AGTATGGGCGATGAGGGAAA+CGG - chr7_3:85938489-85938508 Msa1133010:intron 50.0%
GAGTTAACTACCGCAGGTAG+TGG - chr7_3:85938646-85938665 Msa1133010:intron 50.0%
TGCAAAAGACGCTGTGGTGA+CGG - chr7_3:85939055-85939074 Msa1133010:intron 50.0%
GTGACAAACTGACGAGAGCT+TGG - chr7_3:85939085-85939104 Msa1133010:intron 50.0%
!!! TTTTTGGTTGAGGTGCGCTG+TGG + chr7_3:85939164-85939183 None:intergenic 50.0%
ATCTCTTGATGCTGAGCCTC+TGG - chr7_3:85939570-85939589 Msa1133010:intron 50.0%
!! TGGCTTCTAAAGCATGGGAG+TGG + chr7_3:85939635-85939654 None:intergenic 50.0%
!! CCATGGTGGCTTCTAAAGCA+TGG + chr7_3:85939641-85939660 None:intergenic 50.0%
!! CCATGCTTTAGAAGCCACCA+TGG - chr7_3:85939638-85939657 Msa1133010:intron 50.0%
GTACTCTCTGATGACTGGTG+TGG - chr7_3:85940305-85940324 Msa1133010:intron 50.0%
AATCCTCCATTGCTGAGAGG+AGG - chr7_3:85940469-85940488 Msa1133010:intron 50.0%
TTCACACCTCCTCTCAGCAA+TGG + chr7_3:85940478-85940497 None:intergenic 50.0%
CGATTGAAGTCTCAGCTGGA+AGG + chr7_3:85940875-85940894 None:intergenic 50.0%
CTCTCGATTGAAGTCTCAGC+TGG + chr7_3:85940879-85940898 None:intergenic 50.0%
CAGCTGAGACTTCAATCGAG+AGG - chr7_3:85940877-85940896 Msa1133010:intron 50.0%
TGCTGCCCAATAATGACCTC+TGG + chr7_3:85940951-85940970 None:intergenic 50.0%
CAGCATTCCATCCTCATGGA+AGG - chr7_3:85940966-85940985 Msa1133010:intron 50.0%
CCGGATGGAATTATCCTTCC+TGG + chr7_3:85941041-85941060 None:intergenic 50.0%
GCCATTTGGGAGAGAGAACG+AGG + chr7_3:85936417-85936436 None:intergenic 55.0%
CAATTCACCCGATCCGGTGA+TGG + chr7_3:85936564-85936583 None:intergenic 55.0%
CATCACCGGATCGGGTGAAT+TGG - chr7_3:85936562-85936581 Msa1133010:three_prime_UTR 55.0%
TCGGAAGCCACTGACCCAAT+GGG + chr7_3:85936614-85936633 None:intergenic 55.0%
TTCGGAAGCCACTGACCCAA+TGG + chr7_3:85936615-85936634 None:intergenic 55.0%
GCACCTAATGTGGTTCTCGC+TGG - chr7_3:85936657-85936676 Msa1133010:three_prime_UTR 55.0%
GATGGTGCTTCTGTTTGGCC+TGG - chr7_3:85936696-85936715 Msa1133010:CDS 55.0%
TGGCCTGGTTGTGTTCTTCG+TGG - chr7_3:85936711-85936730 Msa1133010:CDS 55.0%
GCTGTGTTCTTCATGCCGCT+TGG - chr7_3:85936781-85936800 Msa1133010:CDS 55.0%
ACAGTGGGTCACCGTGATTC+TGG + chr7_3:85937057-85937076 None:intergenic 55.0%
GAACATGGAAGGGAGGGCTT+TGG - chr7_3:85937334-85937353 Msa1133010:intron 55.0%
ACATGGAAGGGAGGGCTTTG+GGG - chr7_3:85937336-85937355 Msa1133010:intron 55.0%
! CTTTGGGGGAAGGGATGAGA+GGG - chr7_3:85937351-85937370 Msa1133010:intron 55.0%
TGAGCGTAGTATGGGCGATG+AGG - chr7_3:85938482-85938501 Msa1133010:intron 55.0%
GAGCGTAGTATGGGCGATGA+GGG - chr7_3:85938483-85938502 Msa1133010:intron 55.0%
GTATGGGCGATGAGGGAAAC+GGG - chr7_3:85938490-85938509 Msa1133010:intron 55.0%
AGCAGCGAGTTAACTACCGC+AGG - chr7_3:85938640-85938659 Msa1133010:intron 55.0%
GGAGTCTGGCATTCTACCAG+AGG + chr7_3:85939589-85939608 None:intergenic 55.0%
CTCTCTGATGACTGGTGTGG+TGG - chr7_3:85940308-85940327 Msa1133010:intron 55.0%
TCTGATGACTGGTGTGGTGG+TGG - chr7_3:85940311-85940330 Msa1133010:intron 55.0%
ACACCTCCTCTCAGCAATGG+AGG + chr7_3:85940475-85940494 None:intergenic 55.0%
TAGGGAACTGCTTTGGCTGC+TGG + chr7_3:85940608-85940627 None:intergenic 55.0%
ATCCTGCACTATCGAGCCAG+AGG - chr7_3:85940932-85940951 Msa1133010:intron 55.0%
TGGGCAGCATTCCATCCTCA+TGG - chr7_3:85940962-85940981 Msa1133010:intron 55.0%
GGTCAGTAGTTCCACCAGGA+AGG - chr7_3:85941024-85941043 Msa1133010:intron 55.0%
! GCCGCTTGGTCTTCTCCTAC+AGG - chr7_3:85936795-85936814 Msa1133010:CDS 60.0%
! CATGGAAGGGAGGGCTTTGG+GGG - chr7_3:85937337-85937356 Msa1133010:intron 60.0%
!! AAGGGAGGGCTTTGGGGGAA+GGG - chr7_3:85937342-85937361 Msa1133010:intron 60.0%
!! GCTTTGGGGGAAGGGATGAG+AGG - chr7_3:85937350-85937369 Msa1133010:intron 60.0%
GTTGAGGTGCGCTGTGGTTC+AGG + chr7_3:85939158-85939177 None:intergenic 60.0%
GAGAGATGGGAAAGTGGGGC+TGG - chr7_3:85939782-85939801 Msa1133010:intron 60.0%
GCTAGCCGACCCCACTTAGT+TGG - chr7_3:85940393-85940412 Msa1133010:intron 60.0%
! GACCTCTGGCTCGATAGTGC+AGG + chr7_3:85940937-85940956 None:intergenic 60.0%
GCTGGGTCAGTAGTTCCACC+AGG - chr7_3:85941020-85941039 Msa1133010:intron 60.0%
CCTGCCCAAAGTTCACCGGA+TGG + chr7_3:85941056-85941075 None:intergenic 60.0%
CCATCCGGTGAACTTTGGGC+AGG - chr7_3:85941053-85941072 Msa1133010:intron 60.0%
!! GAAGGGAGGGCTTTGGGGGA+AGG - chr7_3:85937341-85937360 Msa1133010:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 85936278 85941657 85936278 ID=Msa1133010;Name=Msa1133010
chr7_3 mRNA 85936278 85941657 85936278 ID=Msa1133010-mRNA-1;Parent=Msa1133010;Name=Msa1133010-mRNA-1;_AED=0.04;_eAED=0.04;_QI=154|1|1|1|1|1|2|410|253
chr7_3 exon 85936278 85937064 85936278 ID=Msa1133010-mRNA-1:exon:25836;Parent=Msa1133010-mRNA-1
chr7_3 exon 85941119 85941657 85941119 ID=Msa1133010-mRNA-1:exon:25835;Parent=Msa1133010-mRNA-1
chr7_3 five_prime_UTR 85941504 85941657 85941504 ID=Msa1133010-mRNA-1:five_prime_utr;Parent=Msa1133010-mRNA-1
chr7_3 CDS 85941119 85941503 85941119 ID=Msa1133010-mRNA-1:cds;Parent=Msa1133010-mRNA-1
chr7_3 CDS 85936688 85937064 85936688 ID=Msa1133010-mRNA-1:cds;Parent=Msa1133010-mRNA-1
chr7_3 three_prime_UTR 85936278 85936687 85936278 ID=Msa1133010-mRNA-1:three_prime_utr;Parent=Msa1133010-mRNA-1
Gene Sequence

>Msa1133010

ATGGCGAATCTAGCACGATTTACCAACAAAGCCCTAAGAACCGCATACTCCATAACAAAGCATCACGCACAACCGCAACTAGCTTCATCCGAACGCGCTTTTGCAACAGAAGCTGCGAAATCTATTACTCCATCACCGGATCGGGTGAATTGGGATTATAGAGGACAGAGGAAGATAATCCCATTGGGTCAGTGGCTTCCGAAGATAGCTGTTGATGCTTACGTGGCACCTAATGTGGTTCTCGCTGGTCAAGTTCATGTTTGGGATGGTGCTTCTGTTTGGCCTGGTTGTGTTCTTCGTGGTGATCTGAATAAGATTAGTGTTGGTTTTTGTTCTAATGTTCAGGAACGCTGTGTTCTTCATGCCGCTTGGTCTTCTCCTACAGGCCTTCCAGCTGAGACTTCAATCGAGAGGTATGTGACTATTGGGGCCTATAGCCTGTTAAGATCCTGCACTATCGAGCCAGAGGTCATTATTGGGCAGCATTCCATCCTCATGGAAGGTTCTATAGTGGAGACACACTCAATTCTTGAAGCTGGGTCAGTAGTTCCACCAGGAAGGATAATTCCATCCGGTGAACTTTGGGCAGGTAATCCAGCCAAGTTTGTGAGGACTTTGACCCATGAAGAAACCTTAGAAATCCCCAAACTCGCAGTTGCAATAAATGATTTAAGCAAAGATCATTACCATGAGTTCCTTCCGTATTCCACAGTATATTTGGAGGTTGAGAAATTTAAGAAGTCCTTGGGTATTTCTGTTTGA
Protein sequence

>Msa1133010

MANLARFTNKALRTAYSITKHHAQPQLASSERAFATEAAKSITPSPDRVNWDYRGQRKIIPLGQWLPKIAVDAYVAPNVVLAGQVHVWDGASVWPGCVLRGDLNKISVGFCSNVQERCVLHAAWSSPTGLPAETSIERYVTIGAYSLLRSCTIEPEVIIGQHSILMEGSIVETHSILEAGSVVPPGRIIPSGELWAGNPAKFVRTLTHEETLEIPKLAVAINDLSKDHYHEFLPYSTVYLEVEKFKKSLGISV*