Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0620350 | XP_013457137.1 | 96.667 | 210 | 7 | 0 | 1 | 210 | 1 | 210 | 6.11e-147 | 417 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0620350 | sp|O81900|DYT1_ARATH | 45.283 | 159 | 75 | 2 | 44 | 192 | 29 | 185 | 8.31e-38 | 133 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0620350 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0620350 | Msa0654100 | 0.956640 | 1.828846e-114 | -8.615850e-47 |
| Msa0620350 | Msa1380800 | 0.999877 | 0.000000e+00 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0620350 | MtrunA17_Chr4g0048851 | 96.667 | 210 | 7 | 0 | 1 | 210 | 1 | 210 | 5.62e-151 | 417 |
| Msa0620350 | MtrunA17_Chr4g0048891 | 51.111 | 135 | 62 | 3 | 1 | 133 | 1 | 133 | 3.99e-36 | 124 |
| Msa0620350 | MtrunA17_Chr8g0365711 | 31.429 | 175 | 106 | 3 | 42 | 202 | 239 | 413 | 8.93e-20 | 86.3 |
| Msa0620350 | MtrunA17_Chr1g0211081 | 30.526 | 190 | 92 | 4 | 27 | 183 | 304 | 486 | 6.80e-18 | 81.3 |
| Msa0620350 | MtrunA17_Chr2g0320291 | 31.737 | 167 | 109 | 3 | 37 | 198 | 121 | 287 | 8.34e-16 | 74.3 |
| Msa0620350 | MtrunA17_Chr4g0028071 | 29.940 | 167 | 96 | 5 | 46 | 197 | 148 | 308 | 1.73e-15 | 73.9 |
| Msa0620350 | MtrunA17_Chr2g0298751 | 27.108 | 166 | 103 | 2 | 45 | 192 | 50 | 215 | 1.02e-11 | 62.4 |
| Msa0620350 | MtrunA17_Chr3g0131691 | 45.055 | 91 | 46 | 2 | 14 | 104 | 269 | 355 | 8.90e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0620350 | AT4G21330.1 | 45.283 | 159 | 75 | 2 | 44 | 192 | 29 | 185 | 8.45e-39 | 133 |
| Msa0620350 | AT2G16910.1 | 32.298 | 161 | 82 | 3 | 46 | 179 | 313 | 473 | 9.88e-18 | 81.3 |
| Msa0620350 | AT5G57150.3 | 30.769 | 169 | 103 | 3 | 38 | 192 | 46 | 214 | 1.75e-14 | 69.7 |
| Msa0620350 | AT5G57150.5 | 30.769 | 169 | 103 | 3 | 38 | 192 | 45 | 213 | 1.97e-14 | 69.7 |
| Msa0620350 | AT5G57150.2 | 30.769 | 169 | 103 | 3 | 38 | 192 | 46 | 214 | 2.15e-14 | 69.7 |
| Msa0620350 | AT5G57150.1 | 30.769 | 169 | 103 | 3 | 38 | 192 | 45 | 213 | 3.46e-14 | 69.7 |
| Msa0620350 | AT5G57150.4 | 30.769 | 169 | 103 | 3 | 38 | 192 | 46 | 214 | 4.47e-14 | 69.3 |
| Msa0620350 | AT2G28160.2 | 27.869 | 183 | 119 | 5 | 21 | 191 | 103 | 284 | 6.96e-13 | 66.6 |
| Msa0620350 | AT2G28160.1 | 27.869 | 183 | 119 | 5 | 21 | 191 | 103 | 284 | 8.07e-13 | 66.6 |
| Msa0620350 | AT1G10610.2 | 28.571 | 147 | 96 | 1 | 44 | 181 | 231 | 377 | 8.17e-13 | 67.0 |
| Msa0620350 | AT1G10610.1 | 28.571 | 147 | 96 | 1 | 44 | 181 | 261 | 407 | 1.02e-12 | 66.6 |
| Msa0620350 | AT1G10610.3 | 28.571 | 147 | 96 | 1 | 44 | 181 | 164 | 310 | 1.42e-12 | 65.9 |
| Msa0620350 | AT1G12860.1 | 29.870 | 154 | 93 | 2 | 46 | 186 | 266 | 417 | 2.88e-12 | 65.5 |
| Msa0620350 | AT1G12860.2 | 29.870 | 154 | 93 | 2 | 46 | 186 | 266 | 417 | 2.98e-12 | 65.1 |
| Msa0620350 | AT3G26744.6 | 30.769 | 156 | 93 | 3 | 46 | 186 | 306 | 461 | 2.55e-11 | 62.4 |
| Msa0620350 | AT3G26744.1 | 30.769 | 156 | 93 | 3 | 46 | 186 | 306 | 461 | 2.64e-11 | 62.4 |
| Msa0620350 | AT3G26744.4 | 30.769 | 156 | 93 | 3 | 46 | 186 | 306 | 461 | 2.64e-11 | 62.4 |
| Msa0620350 | AT3G26744.2 | 30.769 | 156 | 93 | 3 | 46 | 186 | 306 | 461 | 2.64e-11 | 62.4 |
| Msa0620350 | AT4G37850.2 | 31.818 | 154 | 80 | 4 | 51 | 188 | 156 | 300 | 2.87e-11 | 62.0 |
| Msa0620350 | AT4G37850.1 | 31.818 | 154 | 80 | 4 | 51 | 188 | 156 | 300 | 2.87e-11 | 62.0 |
Find 43 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAACTATTATCAAGTATT+AGG | 0.172705 | 4_2:-71861657 | None:intergenic |
| TCTTTCTGTCTCAAGGTTCT+TGG | 0.203142 | 4_2:+71862821 | None:intergenic |
| TTCTTGGATGTGAACACTTT+TGG | 0.236396 | 4_2:+71862837 | None:intergenic |
| GATGAATAAAATGGGGTTAC+AGG | 0.250695 | 4_2:-71862166 | Msa0620350:intron |
| AACTTCATGTTGCAACTTCA+TGG | 0.287708 | 4_2:+71862278 | None:intergenic |
| TGTTGATGAGATGAATAAAA+TGG | 0.288149 | 4_2:-71862175 | Msa0620350:CDS |
| TTGGGTTTCAATGCTGAAAA+TGG | 0.303250 | 4_2:-71862912 | Msa0620350:CDS |
| GCAGAAGACTCTCTTTGTTT+TGG | 0.306313 | 4_2:+71862198 | None:intergenic |
| CCAACTATTATCAAGTATTA+GGG | 0.313449 | 4_2:-71861656 | None:intergenic |
| CCCTAATACTTGATAATAGT+TGG | 0.313701 | 4_2:+71861656 | None:intergenic |
| CAATAGACTATGTGTGTCTA+TGG | 0.334837 | 4_2:-71862940 | Msa0620350:CDS |
| TTCTCTTTCTTTCTGTCTCA+AGG | 0.354427 | 4_2:+71862814 | None:intergenic |
| ATGCTGAAAATGGTAGCAAT+AGG | 0.358285 | 4_2:-71862902 | Msa0620350:CDS |
| TCTCATTACAGCCTCCTTGC+AGG | 0.362149 | 4_2:-71861895 | Msa0620350:intron |
| ATGGTAGCAATAGGGGAAAC+TGG | 0.388089 | 4_2:-71862893 | Msa0620350:CDS |
| GAAACTCACTAGCAGACTTT+TGG | 0.388264 | 4_2:-71862787 | Msa0620350:CDS |
| GTGCTTACATTTGTGATGAT+TGG | 0.399278 | 4_2:+71862747 | None:intergenic |
| TGCTGAAAATGGTAGCAATA+GGG | 0.418097 | 4_2:-71862901 | Msa0620350:CDS |
| GTTGATGAGATGAATAAAAT+GGG | 0.433684 | 4_2:-71862174 | Msa0620350:CDS |
| AGACCTCAGTGTTACTACTA+TGG | 0.457876 | 4_2:-71861928 | Msa0620350:CDS |
| GAATGATTTGAACATTGAAA+TGG | 0.483853 | 4_2:-71861952 | Msa0620350:CDS |
| CACAATAGAGCTTGATGGAA+TGG | 0.493719 | 4_2:-71862247 | Msa0620350:CDS |
| AGTCTCACAATAGAGCTTGA+TGG | 0.495480 | 4_2:-71862252 | Msa0620350:CDS |
| GTGCAGGTAGCAAAAGTTGA+TGG | 0.518362 | 4_2:-71862044 | Msa0620350:CDS |
| ATGCTCATTGAGAAGAAAAG+AGG | 0.521277 | 4_2:-71862002 | Msa0620350:CDS |
| ATGTGTGTCTATGGAAGAGT+TGG | 0.537161 | 4_2:-71862931 | Msa0620350:CDS |
| GAACAAAGCAAGCATTATTG+AGG | 0.548126 | 4_2:-71862316 | Msa0620350:CDS |
| CTTTCTATAGGAAGAGGTGC+AGG | 0.549579 | 4_2:-71862060 | Msa0620350:intron |
| CTCAGTGTTACTACTATGGC+AGG | 0.550252 | 4_2:-71861924 | Msa0620350:CDS |
| GCTGAAAATGGTAGCAATAG+GGG | 0.556414 | 4_2:-71862900 | Msa0620350:CDS |
| GGAATTCGATAAAGTTCAAG+TGG | 0.574985 | 4_2:+71861677 | None:intergenic |
| AATTTATAGTGTCACCTGCA+AGG | 0.580808 | 4_2:+71861881 | None:intergenic |
| AAGTTGATGGAAATAAGCTA+TGG | 0.582461 | 4_2:-71862031 | Msa0620350:CDS |
| TTGAGACAGAAAGAAAGAGA+AGG | 0.583322 | 4_2:-71862812 | Msa0620350:CDS |
| AACAAGCACCGTGATAATGA+TGG | 0.583729 | 4_2:-71862864 | Msa0620350:CDS |
| TGTGTGTCTATGGAAGAGTT+GGG | 0.584878 | 4_2:-71862930 | Msa0620350:CDS |
| TTGGGACACCATCATTATCA+CGG | 0.595132 | 4_2:+71862856 | None:intergenic |
| TGAGACAGAAAGAAAGAGAA+GGG | 0.595420 | 4_2:-71862811 | Msa0620350:CDS |
| GCAATAGGGGAAACTGGAGA+AGG | 0.660867 | 4_2:-71862887 | Msa0620350:CDS |
| TCATTGAGAAGAAAAGAGGA+AGG | 0.693261 | 4_2:-71861998 | Msa0620350:CDS |
| TTGATGAGATGAATAAAATG+GGG | 0.713073 | 4_2:-71862173 | Msa0620350:CDS |
| TTATAGTGTCACCTGCAAGG+AGG | 0.739971 | 4_2:+71861884 | None:intergenic |
| CTGCCATAGTAGTAACACTG+AGG | 0.765658 | 4_2:+71861925 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAATAATTAGGTCATA+CGG | + | chr4_2:71862137-71862156 | None:intergenic | 15.0% |
| !!! | AGTTTTTAATTAGTACATTA+TGG | - | chr4_2:71862242-71862261 | Msa0620350:CDS | 15.0% |
| !!! | ATTCTATTTTTGTTATTTTC+AGG | - | chr4_2:71862901-71862920 | Msa0620350:CDS | 15.0% |
| !! | ATTATAATAATTAGGTCATA+CGG | + | chr4_2:71862137-71862156 | None:intergenic | 15.0% |
| !!! | AGTTTTTAATTAGTACATTA+TGG | - | chr4_2:71862242-71862261 | Msa0620350:CDS | 15.0% |
| !!! | ATTCTATTTTTGTTATTTTC+AGG | - | chr4_2:71862901-71862920 | Msa0620350:CDS | 15.0% |
| !! | TTTCATGATTTATCATCTAT+TGG | - | chr4_2:71861918-71861937 | Msa0620350:CDS | 20.0% |
| !! | ATATAGTTTAGAGGATTTAA+TGG | + | chr4_2:71861956-71861975 | None:intergenic | 20.0% |
| !! | GATAATGATATATAGTTTAG+AGG | + | chr4_2:71861965-71861984 | None:intergenic | 20.0% |
| !!! | GTTCATCTAAAATCAAATTT+AGG | + | chr4_2:71862283-71862302 | None:intergenic | 20.0% |
| !!! | ATATGTTCTTTTAGTAATGT+TGG | - | chr4_2:71862524-71862543 | Msa0620350:intron | 20.0% |
| !!! | TATGTTCTTTTAGTAATGTT+GGG | - | chr4_2:71862525-71862544 | Msa0620350:intron | 20.0% |
| !! | TTTCATGATTTATCATCTAT+TGG | - | chr4_2:71861918-71861937 | Msa0620350:CDS | 20.0% |
| !! | ATATAGTTTAGAGGATTTAA+TGG | + | chr4_2:71861956-71861975 | None:intergenic | 20.0% |
| !! | GATAATGATATATAGTTTAG+AGG | + | chr4_2:71861965-71861984 | None:intergenic | 20.0% |
| !!! | GTTCATCTAAAATCAAATTT+AGG | + | chr4_2:71862283-71862302 | None:intergenic | 20.0% |
| !!! | ATATGTTCTTTTAGTAATGT+TGG | - | chr4_2:71862524-71862543 | Msa0620350:intron | 20.0% |
| !!! | TATGTTCTTTTAGTAATGTT+GGG | - | chr4_2:71862525-71862544 | Msa0620350:intron | 20.0% |
| ! | TGAAACATTTCATAGACATT+AGG | + | chr4_2:71862030-71862049 | None:intergenic | 25.0% |
| !! | TGTTGATGAGATGAATAAAA+TGG | - | chr4_2:71862440-71862459 | Msa0620350:intron | 25.0% |
| !! | GTTGATGAGATGAATAAAAT+GGG | - | chr4_2:71862441-71862460 | Msa0620350:intron | 25.0% |
| ! | TTGATGAGATGAATAAAATG+GGG | - | chr4_2:71862442-71862461 | Msa0620350:intron | 25.0% |
| !! | ATGTTCTTTTAGTAATGTTG+GGG | - | chr4_2:71862526-71862545 | Msa0620350:intron | 25.0% |
| ! | GAATGATTTGAACATTGAAA+TGG | - | chr4_2:71862663-71862682 | Msa0620350:intron | 25.0% |
| !!! | TTTTTGTTATTTTCAGGACA+TGG | - | chr4_2:71862907-71862926 | Msa0620350:CDS | 25.0% |
| !!! | TTTTGTTATTTTCAGGACAT+GGG | - | chr4_2:71862908-71862927 | Msa0620350:CDS | 25.0% |
| ! | TGAAACATTTCATAGACATT+AGG | + | chr4_2:71862030-71862049 | None:intergenic | 25.0% |
| !! | TGTTGATGAGATGAATAAAA+TGG | - | chr4_2:71862440-71862459 | Msa0620350:intron | 25.0% |
| !! | GTTGATGAGATGAATAAAAT+GGG | - | chr4_2:71862441-71862460 | Msa0620350:intron | 25.0% |
| ! | TTGATGAGATGAATAAAATG+GGG | - | chr4_2:71862442-71862461 | Msa0620350:intron | 25.0% |
| !! | ATGTTCTTTTAGTAATGTTG+GGG | - | chr4_2:71862526-71862545 | Msa0620350:intron | 25.0% |
| ! | GAATGATTTGAACATTGAAA+TGG | - | chr4_2:71862663-71862682 | Msa0620350:intron | 25.0% |
| !!! | TTTTTGTTATTTTCAGGACA+TGG | - | chr4_2:71862907-71862926 | Msa0620350:CDS | 25.0% |
| !!! | TTTTGTTATTTTCAGGACAT+GGG | - | chr4_2:71862908-71862927 | Msa0620350:CDS | 25.0% |
| GATGTTAGAGACTAAATTGA+CGG | + | chr4_2:71862079-71862098 | None:intergenic | 30.0% | |
| TATAGATCATGAGACTCATT+AGG | + | chr4_2:71862507-71862526 | None:intergenic | 30.0% | |
| TTGATACTTTCTATAGGAAG+AGG | - | chr4_2:71862549-71862568 | Msa0620350:intron | 30.0% | |
| !! | AAGTTGATGGAAATAAGCTA+TGG | - | chr4_2:71862584-71862603 | Msa0620350:intron | 30.0% |
| GATGTTAGAGACTAAATTGA+CGG | + | chr4_2:71862079-71862098 | None:intergenic | 30.0% | |
| TATAGATCATGAGACTCATT+AGG | + | chr4_2:71862507-71862526 | None:intergenic | 30.0% | |
| TTGATACTTTCTATAGGAAG+AGG | - | chr4_2:71862549-71862568 | Msa0620350:intron | 30.0% | |
| !! | AAGTTGATGGAAATAAGCTA+TGG | - | chr4_2:71862584-71862603 | Msa0620350:intron | 30.0% |
| CAATAGACTATGTGTGTCTA+TGG | - | chr4_2:71861675-71861694 | Msa0620350:CDS | 35.0% | |
| TTGGGTTTCAATGCTGAAAA+TGG | - | chr4_2:71861703-71861722 | Msa0620350:intron | 35.0% | |
| ATGCTGAAAATGGTAGCAAT+AGG | - | chr4_2:71861713-71861732 | Msa0620350:intron | 35.0% | |
| TGCTGAAAATGGTAGCAATA+GGG | - | chr4_2:71861714-71861733 | Msa0620350:intron | 35.0% | |
| ! | TCTTGGATGTGAACACTTTT+GGG | + | chr4_2:71861780-71861799 | None:intergenic | 35.0% |
| ! | TTCTTGGATGTGAACACTTT+TGG | + | chr4_2:71861781-71861800 | None:intergenic | 35.0% |
| TTCTCTTTCTTTCTGTCTCA+AGG | + | chr4_2:71861804-71861823 | None:intergenic | 35.0% | |
| TTGAGACAGAAAGAAAGAGA+AGG | - | chr4_2:71861803-71861822 | Msa0620350:intron | 35.0% | |
| TGAGACAGAAAGAAAGAGAA+GGG | - | chr4_2:71861804-71861823 | Msa0620350:intron | 35.0% | |
| GTGCTTACATTTGTGATGAT+TGG | + | chr4_2:71861871-71861890 | None:intergenic | 35.0% | |
| ! | ACGGATTTTCGTACACTATA+TGG | + | chr4_2:71862060-71862079 | None:intergenic | 35.0% |
| GAACAAAGCAAGCATTATTG+AGG | - | chr4_2:71862299-71862318 | Msa0620350:CDS | 35.0% | |
| AACTTCATGTTGCAACTTCA+TGG | + | chr4_2:71862340-71862359 | None:intergenic | 35.0% | |
| ! | TCAACTCTTTTCTCTCTTCT+TGG | + | chr4_2:71862396-71862415 | None:intergenic | 35.0% |
| GATGAATAAAATGGGGTTAC+AGG | - | chr4_2:71862449-71862468 | Msa0620350:intron | 35.0% | |
| !! | TTGGGGTTGATACTTTCTAT+AGG | - | chr4_2:71862543-71862562 | Msa0620350:intron | 35.0% |
| ATGCTCATTGAGAAGAAAAG+AGG | - | chr4_2:71862613-71862632 | Msa0620350:intron | 35.0% | |
| TCATTGAGAAGAAAAGAGGA+AGG | - | chr4_2:71862617-71862636 | Msa0620350:intron | 35.0% | |
| AATTTATAGTGTCACCTGCA+AGG | + | chr4_2:71862737-71862756 | None:intergenic | 35.0% | |
| GGAATTCGATAAAGTTCAAG+TGG | + | chr4_2:71862941-71862960 | None:intergenic | 35.0% | |
| CAATAGACTATGTGTGTCTA+TGG | - | chr4_2:71861675-71861694 | Msa0620350:CDS | 35.0% | |
| TTGGGTTTCAATGCTGAAAA+TGG | - | chr4_2:71861703-71861722 | Msa0620350:intron | 35.0% | |
| ATGCTGAAAATGGTAGCAAT+AGG | - | chr4_2:71861713-71861732 | Msa0620350:intron | 35.0% | |
| TGCTGAAAATGGTAGCAATA+GGG | - | chr4_2:71861714-71861733 | Msa0620350:intron | 35.0% | |
| ! | TCTTGGATGTGAACACTTTT+GGG | + | chr4_2:71861780-71861799 | None:intergenic | 35.0% |
| ! | TTCTTGGATGTGAACACTTT+TGG | + | chr4_2:71861781-71861800 | None:intergenic | 35.0% |
| TTCTCTTTCTTTCTGTCTCA+AGG | + | chr4_2:71861804-71861823 | None:intergenic | 35.0% | |
| TTGAGACAGAAAGAAAGAGA+AGG | - | chr4_2:71861803-71861822 | Msa0620350:intron | 35.0% | |
| TGAGACAGAAAGAAAGAGAA+GGG | - | chr4_2:71861804-71861823 | Msa0620350:intron | 35.0% | |
| GTGCTTACATTTGTGATGAT+TGG | + | chr4_2:71861871-71861890 | None:intergenic | 35.0% | |
| ! | ACGGATTTTCGTACACTATA+TGG | + | chr4_2:71862060-71862079 | None:intergenic | 35.0% |
| GAACAAAGCAAGCATTATTG+AGG | - | chr4_2:71862299-71862318 | Msa0620350:CDS | 35.0% | |
| AACTTCATGTTGCAACTTCA+TGG | + | chr4_2:71862340-71862359 | None:intergenic | 35.0% | |
| ! | TCAACTCTTTTCTCTCTTCT+TGG | + | chr4_2:71862396-71862415 | None:intergenic | 35.0% |
| GATGAATAAAATGGGGTTAC+AGG | - | chr4_2:71862449-71862468 | Msa0620350:intron | 35.0% | |
| !! | TTGGGGTTGATACTTTCTAT+AGG | - | chr4_2:71862543-71862562 | Msa0620350:intron | 35.0% |
| ATGCTCATTGAGAAGAAAAG+AGG | - | chr4_2:71862613-71862632 | Msa0620350:intron | 35.0% | |
| TCATTGAGAAGAAAAGAGGA+AGG | - | chr4_2:71862617-71862636 | Msa0620350:intron | 35.0% | |
| AATTTATAGTGTCACCTGCA+AGG | + | chr4_2:71862737-71862756 | None:intergenic | 35.0% | |
| GGAATTCGATAAAGTTCAAG+TGG | + | chr4_2:71862941-71862960 | None:intergenic | 35.0% | |
| ATGTGTGTCTATGGAAGAGT+TGG | - | chr4_2:71861684-71861703 | Msa0620350:CDS | 40.0% | |
| TGTGTGTCTATGGAAGAGTT+GGG | - | chr4_2:71861685-71861704 | Msa0620350:CDS | 40.0% | |
| GCTGAAAATGGTAGCAATAG+GGG | - | chr4_2:71861715-71861734 | Msa0620350:intron | 40.0% | |
| ! | AACAAGCACCGTGATAATGA+TGG | - | chr4_2:71861751-71861770 | Msa0620350:intron | 40.0% |
| TTGGGACACCATCATTATCA+CGG | + | chr4_2:71861762-71861781 | None:intergenic | 40.0% | |
| TCTTTCTGTCTCAAGGTTCT+TGG | + | chr4_2:71861797-71861816 | None:intergenic | 40.0% | |
| ! | GAAACTCACTAGCAGACTTT+TGG | - | chr4_2:71861828-71861847 | Msa0620350:intron | 40.0% |
| AGTCTCACAATAGAGCTTGA+TGG | - | chr4_2:71862363-71862382 | Msa0620350:intron | 40.0% | |
| CACAATAGAGCTTGATGGAA+TGG | - | chr4_2:71862368-71862387 | Msa0620350:intron | 40.0% | |
| !! | GCAGAAGACTCTCTTTGTTT+TGG | + | chr4_2:71862420-71862439 | None:intergenic | 40.0% |
| ! | AGACCTCAGTGTTACTACTA+TGG | - | chr4_2:71862687-71862706 | Msa0620350:intron | 40.0% |
| !!! | TGTTATTTTCAGGACATGGG+TGG | - | chr4_2:71862911-71862930 | Msa0620350:CDS | 40.0% |
| ATGTGTGTCTATGGAAGAGT+TGG | - | chr4_2:71861684-71861703 | Msa0620350:CDS | 40.0% | |
| TGTGTGTCTATGGAAGAGTT+GGG | - | chr4_2:71861685-71861704 | Msa0620350:CDS | 40.0% | |
| GCTGAAAATGGTAGCAATAG+GGG | - | chr4_2:71861715-71861734 | Msa0620350:intron | 40.0% | |
| ! | AACAAGCACCGTGATAATGA+TGG | - | chr4_2:71861751-71861770 | Msa0620350:intron | 40.0% |
| TTGGGACACCATCATTATCA+CGG | + | chr4_2:71861762-71861781 | None:intergenic | 40.0% | |
| TCTTTCTGTCTCAAGGTTCT+TGG | + | chr4_2:71861797-71861816 | None:intergenic | 40.0% | |
| ! | GAAACTCACTAGCAGACTTT+TGG | - | chr4_2:71861828-71861847 | Msa0620350:intron | 40.0% |
| AGTCTCACAATAGAGCTTGA+TGG | - | chr4_2:71862363-71862382 | Msa0620350:intron | 40.0% | |
| CACAATAGAGCTTGATGGAA+TGG | - | chr4_2:71862368-71862387 | Msa0620350:intron | 40.0% | |
| !! | GCAGAAGACTCTCTTTGTTT+TGG | + | chr4_2:71862420-71862439 | None:intergenic | 40.0% |
| ! | AGACCTCAGTGTTACTACTA+TGG | - | chr4_2:71862687-71862706 | Msa0620350:intron | 40.0% |
| !!! | TGTTATTTTCAGGACATGGG+TGG | - | chr4_2:71862911-71862930 | Msa0620350:CDS | 40.0% |
| ATGGTAGCAATAGGGGAAAC+TGG | - | chr4_2:71861722-71861741 | Msa0620350:intron | 45.0% | |
| !!! | CTAGCAGACTTTTGGTGCTT+AGG | - | chr4_2:71861836-71861855 | Msa0620350:intron | 45.0% |
| ! | CTTTCTATAGGAAGAGGTGC+AGG | - | chr4_2:71862555-71862574 | Msa0620350:intron | 45.0% |
| GTGCAGGTAGCAAAAGTTGA+TGG | - | chr4_2:71862571-71862590 | Msa0620350:intron | 45.0% | |
| CTGCCATAGTAGTAACACTG+AGG | + | chr4_2:71862693-71862712 | None:intergenic | 45.0% | |
| ! | CTCAGTGTTACTACTATGGC+AGG | - | chr4_2:71862691-71862710 | Msa0620350:intron | 45.0% |
| TTATAGTGTCACCTGCAAGG+AGG | + | chr4_2:71862734-71862753 | None:intergenic | 45.0% | |
| ATGGTAGCAATAGGGGAAAC+TGG | - | chr4_2:71861722-71861741 | Msa0620350:intron | 45.0% | |
| !!! | CTAGCAGACTTTTGGTGCTT+AGG | - | chr4_2:71861836-71861855 | Msa0620350:intron | 45.0% |
| ! | CTTTCTATAGGAAGAGGTGC+AGG | - | chr4_2:71862555-71862574 | Msa0620350:intron | 45.0% |
| GTGCAGGTAGCAAAAGTTGA+TGG | - | chr4_2:71862571-71862590 | Msa0620350:intron | 45.0% | |
| CTGCCATAGTAGTAACACTG+AGG | + | chr4_2:71862693-71862712 | None:intergenic | 45.0% | |
| ! | CTCAGTGTTACTACTATGGC+AGG | - | chr4_2:71862691-71862710 | Msa0620350:intron | 45.0% |
| TTATAGTGTCACCTGCAAGG+AGG | + | chr4_2:71862734-71862753 | None:intergenic | 45.0% | |
| !! | ACTAAATAATTATAATAATT+AGG | + | chr4_2:71862145-71862164 | None:intergenic | 5.0% |
| !!! | TATTATAATTATTTAGTTTA+TGG | - | chr4_2:71862148-71862167 | Msa0620350:intron | 5.0% |
| !! | ACTAAATAATTATAATAATT+AGG | + | chr4_2:71862145-71862164 | None:intergenic | 5.0% |
| !!! | TATTATAATTATTTAGTTTA+TGG | - | chr4_2:71862148-71862167 | Msa0620350:intron | 5.0% |
| GCAATAGGGGAAACTGGAGA+AGG | - | chr4_2:71861728-71861747 | Msa0620350:intron | 50.0% | |
| TCTCATTACAGCCTCCTTGC+AGG | - | chr4_2:71862720-71862739 | Msa0620350:intron | 50.0% | |
| GCAATAGGGGAAACTGGAGA+AGG | - | chr4_2:71861728-71861747 | Msa0620350:intron | 50.0% | |
| TCTCATTACAGCCTCCTTGC+AGG | - | chr4_2:71862720-71862739 | Msa0620350:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 71861658 | 71862979 | 71861658 | ID=Msa0620350;Name=Msa0620350 |
| chr4_2 | mRNA | 71861658 | 71862979 | 71861658 | ID=Msa0620350-mRNA-1;Parent=Msa0620350;Name=Msa0620350-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|4|0|210 |
| chr4_2 | exon | 71862755 | 71862979 | 71862755 | ID=Msa0620350-mRNA-1:exon:21278;Parent=Msa0620350-mRNA-1 |
| chr4_2 | exon | 71862167 | 71862340 | 71862167 | ID=Msa0620350-mRNA-1:exon:21277;Parent=Msa0620350-mRNA-1 |
| chr4_2 | exon | 71861896 | 71862072 | 71861896 | ID=Msa0620350-mRNA-1:exon:21276;Parent=Msa0620350-mRNA-1 |
| chr4_2 | exon | 71861658 | 71861714 | 71861658 | ID=Msa0620350-mRNA-1:exon:21275;Parent=Msa0620350-mRNA-1 |
| chr4_2 | CDS | 71862755 | 71862979 | 71862755 | ID=Msa0620350-mRNA-1:cds;Parent=Msa0620350-mRNA-1 |
| chr4_2 | CDS | 71862167 | 71862340 | 71862167 | ID=Msa0620350-mRNA-1:cds;Parent=Msa0620350-mRNA-1 |
| chr4_2 | CDS | 71861896 | 71862072 | 71861896 | ID=Msa0620350-mRNA-1:cds;Parent=Msa0620350-mRNA-1 |
| chr4_2 | CDS | 71861658 | 71861714 | 71861658 | ID=Msa0620350-mRNA-1:cds;Parent=Msa0620350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
