AlfalfaGEDB | Msa0620350

M. sativa cultivar zhongmu-4 / Msa0620350

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0620350	XP_013457137.1	96.667	210	7	0	1	210	1	210	6.11e-147	417

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0620350	sp\|O81900\|DYT1_ARATH	45.283	159	75	2	44	192	29	185	8.31e-38	133

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0620350	TF	bHLH

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0620350	Msa0654100	0.956640	1.828846e-114	-8.615850e-47
Msa0620350	Msa1380800	0.999877	0.000000e+00	-8.615850e-47

Showing 1 to 2 of 2 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0620350	MtrunA17_Chr4g0048851	96.667	210	7	0	1	210	1	210	5.62e-151	417
Msa0620350	MtrunA17_Chr4g0048891	51.111	135	62	3	1	133	1	133	3.99e-36	124
Msa0620350	MtrunA17_Chr8g0365711	31.429	175	106	3	42	202	239	413	8.93e-20	86.3
Msa0620350	MtrunA17_Chr1g0211081	30.526	190	92	4	27	183	304	486	6.80e-18	81.3
Msa0620350	MtrunA17_Chr2g0320291	31.737	167	109	3	37	198	121	287	8.34e-16	74.3
Msa0620350	MtrunA17_Chr4g0028071	29.940	167	96	5	46	197	148	308	1.73e-15	73.9
Msa0620350	MtrunA17_Chr2g0298751	27.108	166	103	2	45	192	50	215	1.02e-11	62.4
Msa0620350	MtrunA17_Chr3g0131691	45.055	91	46	2	14	104	269	355	8.90e-11	60.5

Showing 1 to 8 of 8 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0620350	AT4G21330.1	45.283	159	75	2	44	192	29	185	8.45e-39	133
Msa0620350	AT2G16910.1	32.298	161	82	3	46	179	313	473	9.88e-18	81.3
Msa0620350	AT5G57150.3	30.769	169	103	3	38	192	46	214	1.75e-14	69.7
Msa0620350	AT5G57150.5	30.769	169	103	3	38	192	45	213	1.97e-14	69.7
Msa0620350	AT5G57150.2	30.769	169	103	3	38	192	46	214	2.15e-14	69.7
Msa0620350	AT5G57150.1	30.769	169	103	3	38	192	45	213	3.46e-14	69.7
Msa0620350	AT5G57150.4	30.769	169	103	3	38	192	46	214	4.47e-14	69.3
Msa0620350	AT2G28160.2	27.869	183	119	5	21	191	103	284	6.96e-13	66.6
Msa0620350	AT2G28160.1	27.869	183	119	5	21	191	103	284	8.07e-13	66.6
Msa0620350	AT1G10610.2	28.571	147	96	1	44	181	231	377	8.17e-13	67.0

Showing 1 to 10 of 20 entries

Previous1 2Next

Find 43 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAGCACCGTGATAATGA+TGG	0.583729	4_2:-71862864	Msa0620350:CDS
AACTTCATGTTGCAACTTCA+TGG	0.287708	4_2:+71862278	None:intergenic
AAGTTGATGGAAATAAGCTA+TGG	0.582461	4_2:-71862031	Msa0620350:CDS
AATTTATAGTGTCACCTGCA+AGG	0.580808	4_2:+71861881	None:intergenic
AGACCTCAGTGTTACTACTA+TGG	0.457876	4_2:-71861928	Msa0620350:CDS
AGTCTCACAATAGAGCTTGA+TGG	0.495480	4_2:-71862252	Msa0620350:CDS
ATGCTCATTGAGAAGAAAAG+AGG	0.521277	4_2:-71862002	Msa0620350:CDS
ATGCTGAAAATGGTAGCAAT+AGG	0.358285	4_2:-71862902	Msa0620350:CDS
ATGGTAGCAATAGGGGAAAC+TGG	0.388089	4_2:-71862893	Msa0620350:CDS
ATGTGTGTCTATGGAAGAGT+TGG	0.537161	4_2:-71862931	Msa0620350:CDS

Showing 1 to 10 of 43 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GATGTTAGAGACTAAATTGA+CGG	+	chr4_2:71862079-71862098	None:intergenic	30.0%
TATAGATCATGAGACTCATT+AGG	+	chr4_2:71862507-71862526	None:intergenic	30.0%
TTGATACTTTCTATAGGAAG+AGG	-	chr4_2:71862549-71862568	Msa0620350:intron	30.0%
GATGTTAGAGACTAAATTGA+CGG	+	chr4_2:71862079-71862098	None:intergenic	30.0%
TATAGATCATGAGACTCATT+AGG	+	chr4_2:71862507-71862526	None:intergenic	30.0%
TTGATACTTTCTATAGGAAG+AGG	-	chr4_2:71862549-71862568	Msa0620350:intron	30.0%
CAATAGACTATGTGTGTCTA+TGG	-	chr4_2:71861675-71861694	Msa0620350:CDS	35.0%
TTGGGTTTCAATGCTGAAAA+TGG	-	chr4_2:71861703-71861722	Msa0620350:intron	35.0%
ATGCTGAAAATGGTAGCAAT+AGG	-	chr4_2:71861713-71861732	Msa0620350:intron	35.0%
TGCTGAAAATGGTAGCAATA+GGG	-	chr4_2:71861714-71861733	Msa0620350:intron	35.0%

Showing 1 to 10 of 128 entries

Previous1 2 3 4 5…13Next

Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	71861658	71862979	71861658	ID=Msa0620350;Name=Msa0620350
chr4_2	mRNA	71861658	71862979	71861658	ID=Msa0620350-mRNA-1;Parent=Msa0620350;Name=Msa0620350-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|0\|0\|1\|1\|1\|4\|0\|210
chr4_2	exon	71862755	71862979	71862755	ID=Msa0620350-mRNA-1:exon:21278;Parent=Msa0620350-mRNA-1
chr4_2	exon	71862167	71862340	71862167	ID=Msa0620350-mRNA-1:exon:21277;Parent=Msa0620350-mRNA-1
chr4_2	exon	71861896	71862072	71861896	ID=Msa0620350-mRNA-1:exon:21276;Parent=Msa0620350-mRNA-1
chr4_2	exon	71861658	71861714	71861658	ID=Msa0620350-mRNA-1:exon:21275;Parent=Msa0620350-mRNA-1
chr4_2	CDS	71862755	71862979	71862755	ID=Msa0620350-mRNA-1:cds;Parent=Msa0620350-mRNA-1
chr4_2	CDS	71862167	71862340	71862167	ID=Msa0620350-mRNA-1:cds;Parent=Msa0620350-mRNA-1
chr4_2	CDS	71861896	71862072	71861896	ID=Msa0620350-mRNA-1:cds;Parent=Msa0620350-mRNA-1
chr4_2	CDS	71861658	71861714	71861658	ID=Msa0620350-mRNA-1:cds;Parent=Msa0620350-mRNA-1

Gene Sequence

>Msa0620350

ATGGAACAAGTAAATAACAATAGACTATGTGTGTCTATGGAAGAGTTGGGTTTCAATGCTGAAAATGGTAGCAATAGGGGAAACTGGAGAAGGAACAAGCACCGTGATAATGATGGTGTCCCAAAAGTGTTCACATCCAAGAACCTTGAGACAGAAAGAAAGAGAAGGGAGAAACTCACTAGCAGACTTTTGGTGCTTAGGTCTTTAGTACCAATCATCACAAATATGAACAAAGCAAGCATTATTGAGGATGCTATCACTTATACCATGAAGTTGCAACATGAAGTTGAGAGTCTCACAATAGAGCTTGATGGAATGGAACCAAGAAGAGAGAAAAGAGTTGAGCCAAAACAAAGAGAGTCTTCTGCTGTTGATGAGATGAATAAAATGGGGTTACAGGAAGAGGTGCAGGTAGCAAAAGTTGATGGAAATAAGCTATGGATTAAGATGCTCATTGAGAAGAAAAGAGGAAGGTTCAACAAATTAATACAAGACTTGAATGATTTGAACATTGAAATGGTAGACCTCAGTGTTACTACTATGGCAGGAGCATATCTCATTACAGCCTCCTTGCAGGACATGGGTGGTGAACCACTTGAACTTTATCGAATTCCAACTATTATCAAGTATTAG

Protein sequence

>Msa0620350

MEQVNNNRLCVSMEELGFNAENGSNRGNWRRNKHRDNDGVPKVFTSKNLETERKRREKLTSRLLVLRSLVPIITNMNKASIIEDAITYTMKLQHEVESLTIELDGMEPRREKRVEPKQRESSAVDEMNKMGLQEEVQVAKVDGNKLWIKMLIEKKRGRFNKLIQDLNDLNIEMVDLSVTTMAGAYLITASLQDMGGEPLELYRIPTIIKY*