Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0654100 | XP_013457137.1 | 96.667 | 210 | 7 | 0 | 1 | 210 | 1 | 210 | 6.11e-147 | 417 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0654100 | sp|O81900|DYT1_ARATH | 45.283 | 159 | 75 | 2 | 44 | 192 | 29 | 185 | 8.31e-38 | 133 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0654100 | A0A072UQ23 | 96.667 | 210 | 7 | 0 | 1 | 210 | 1 | 210 | 2.92e-147 | 417 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0654100 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0620350 | Msa0654100 | 0.956640 | 1.828846e-114 | -8.615850e-47 |
| Msa0654100 | Msa1380800 | 0.956765 | 1.358981e-114 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0654100 | MtrunA17_Chr4g0048851 | 96.667 | 210 | 7 | 0 | 1 | 210 | 1 | 210 | 5.62e-151 | 417 |
| Msa0654100 | MtrunA17_Chr4g0048891 | 51.111 | 135 | 62 | 3 | 1 | 133 | 1 | 133 | 3.99e-36 | 124 |
| Msa0654100 | MtrunA17_Chr8g0365711 | 31.429 | 175 | 106 | 3 | 42 | 202 | 239 | 413 | 8.93e-20 | 86.3 |
| Msa0654100 | MtrunA17_Chr1g0211081 | 30.526 | 190 | 92 | 4 | 27 | 183 | 304 | 486 | 6.80e-18 | 81.3 |
| Msa0654100 | MtrunA17_Chr2g0320291 | 31.737 | 167 | 109 | 3 | 37 | 198 | 121 | 287 | 8.34e-16 | 74.3 |
| Msa0654100 | MtrunA17_Chr4g0028071 | 29.940 | 167 | 96 | 5 | 46 | 197 | 148 | 308 | 1.73e-15 | 73.9 |
| Msa0654100 | MtrunA17_Chr2g0298751 | 27.108 | 166 | 103 | 2 | 45 | 192 | 50 | 215 | 1.02e-11 | 62.4 |
| Msa0654100 | MtrunA17_Chr3g0131691 | 45.055 | 91 | 46 | 2 | 14 | 104 | 269 | 355 | 8.90e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0654100 | AT4G21330.1 | 45.283 | 159 | 75 | 2 | 44 | 192 | 29 | 185 | 8.45e-39 | 133 |
| Msa0654100 | AT2G16910.1 | 32.298 | 161 | 82 | 3 | 46 | 179 | 313 | 473 | 9.88e-18 | 81.3 |
| Msa0654100 | AT5G57150.3 | 30.769 | 169 | 103 | 3 | 38 | 192 | 46 | 214 | 1.75e-14 | 69.7 |
| Msa0654100 | AT5G57150.5 | 30.769 | 169 | 103 | 3 | 38 | 192 | 45 | 213 | 1.97e-14 | 69.7 |
| Msa0654100 | AT5G57150.2 | 30.769 | 169 | 103 | 3 | 38 | 192 | 46 | 214 | 2.15e-14 | 69.7 |
| Msa0654100 | AT5G57150.1 | 30.769 | 169 | 103 | 3 | 38 | 192 | 45 | 213 | 3.46e-14 | 69.7 |
| Msa0654100 | AT5G57150.4 | 30.769 | 169 | 103 | 3 | 38 | 192 | 46 | 214 | 4.47e-14 | 69.3 |
| Msa0654100 | AT2G28160.2 | 27.869 | 183 | 119 | 5 | 21 | 191 | 103 | 284 | 6.96e-13 | 66.6 |
| Msa0654100 | AT2G28160.1 | 27.869 | 183 | 119 | 5 | 21 | 191 | 103 | 284 | 8.07e-13 | 66.6 |
| Msa0654100 | AT1G10610.2 | 28.571 | 147 | 96 | 1 | 44 | 181 | 231 | 377 | 8.17e-13 | 67.0 |
| Msa0654100 | AT1G10610.1 | 28.571 | 147 | 96 | 1 | 44 | 181 | 261 | 407 | 1.02e-12 | 66.6 |
| Msa0654100 | AT1G10610.3 | 28.571 | 147 | 96 | 1 | 44 | 181 | 164 | 310 | 1.42e-12 | 65.9 |
| Msa0654100 | AT1G12860.1 | 29.870 | 154 | 93 | 2 | 46 | 186 | 266 | 417 | 2.88e-12 | 65.5 |
| Msa0654100 | AT1G12860.2 | 29.870 | 154 | 93 | 2 | 46 | 186 | 266 | 417 | 2.98e-12 | 65.1 |
| Msa0654100 | AT3G26744.6 | 30.769 | 156 | 93 | 3 | 46 | 186 | 306 | 461 | 2.55e-11 | 62.4 |
| Msa0654100 | AT3G26744.1 | 30.769 | 156 | 93 | 3 | 46 | 186 | 306 | 461 | 2.64e-11 | 62.4 |
| Msa0654100 | AT3G26744.4 | 30.769 | 156 | 93 | 3 | 46 | 186 | 306 | 461 | 2.64e-11 | 62.4 |
| Msa0654100 | AT3G26744.2 | 30.769 | 156 | 93 | 3 | 46 | 186 | 306 | 461 | 2.64e-11 | 62.4 |
| Msa0654100 | AT4G37850.2 | 31.818 | 154 | 80 | 4 | 51 | 188 | 156 | 300 | 2.87e-11 | 62.0 |
| Msa0654100 | AT4G37850.1 | 31.818 | 154 | 80 | 4 | 51 | 188 | 156 | 300 | 2.87e-11 | 62.0 |
Find 43 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAACTATTATCAAGTATT+AGG | 0.172705 | 4_3:-62400089 | None:intergenic |
| TCTTTCTGTCTCAAGGTTCT+TGG | 0.203142 | 4_3:+62401253 | None:intergenic |
| TTCTTGGATGTGAACACTTT+TGG | 0.236396 | 4_3:+62401269 | None:intergenic |
| GATGAATAAAATGGGGTTAC+AGG | 0.250695 | 4_3:-62400598 | Msa0654100:intron |
| AACTTCATGTTGCAACTTCA+TGG | 0.287708 | 4_3:+62400710 | None:intergenic |
| TGTTGATGAGATGAATAAAA+TGG | 0.288149 | 4_3:-62400607 | Msa0654100:CDS |
| TTGGGTTTCAATGCTGAAAA+TGG | 0.303250 | 4_3:-62401344 | Msa0654100:CDS |
| GCAGAAGACTCTCTTTGTTT+TGG | 0.306313 | 4_3:+62400630 | None:intergenic |
| CCAACTATTATCAAGTATTA+GGG | 0.313449 | 4_3:-62400088 | None:intergenic |
| CCCTAATACTTGATAATAGT+TGG | 0.313701 | 4_3:+62400088 | None:intergenic |
| CAATAGACTATGTGTGTCTA+TGG | 0.334837 | 4_3:-62401372 | Msa0654100:CDS |
| TTCTCTTTCTTTCTGTCTCA+AGG | 0.354427 | 4_3:+62401246 | None:intergenic |
| ATGCTGAAAATGGTAGCAAT+AGG | 0.358285 | 4_3:-62401334 | Msa0654100:CDS |
| TCTCATTACAGCCTCCTTGC+AGG | 0.362149 | 4_3:-62400327 | Msa0654100:intron |
| ATGGTAGCAATAGGGGAAAC+TGG | 0.388089 | 4_3:-62401325 | Msa0654100:CDS |
| GAAACTCACTAGCAGACTTT+TGG | 0.388264 | 4_3:-62401219 | Msa0654100:CDS |
| GTGCTTACATTTGTGATGAT+TGG | 0.399278 | 4_3:+62401179 | None:intergenic |
| TGCTGAAAATGGTAGCAATA+GGG | 0.418097 | 4_3:-62401333 | Msa0654100:CDS |
| GTTGATGAGATGAATAAAAT+GGG | 0.433684 | 4_3:-62400606 | Msa0654100:CDS |
| AGACCTCAGTGTTACTACTA+TGG | 0.457876 | 4_3:-62400360 | Msa0654100:CDS |
| GAATGATTTGAACATTGAAA+TGG | 0.483853 | 4_3:-62400384 | Msa0654100:CDS |
| CACAATAGAGCTTGATGGAA+TGG | 0.493719 | 4_3:-62400679 | Msa0654100:CDS |
| AGTCTCACAATAGAGCTTGA+TGG | 0.495480 | 4_3:-62400684 | Msa0654100:CDS |
| GTGCAGGTAGCAAAAGTTGA+TGG | 0.518362 | 4_3:-62400476 | Msa0654100:CDS |
| ATGCTCATTGAGAAGAAAAG+AGG | 0.521277 | 4_3:-62400434 | Msa0654100:CDS |
| ATGTGTGTCTATGGAAGAGT+TGG | 0.537161 | 4_3:-62401363 | Msa0654100:CDS |
| GAACAAAGCAAGCATTATTG+AGG | 0.548126 | 4_3:-62400748 | Msa0654100:CDS |
| CTTTCTATAGGAAGAGGTGC+AGG | 0.549579 | 4_3:-62400492 | Msa0654100:intron |
| CTCAGTGTTACTACTATGGC+AGG | 0.550252 | 4_3:-62400356 | Msa0654100:CDS |
| GCTGAAAATGGTAGCAATAG+GGG | 0.556414 | 4_3:-62401332 | Msa0654100:CDS |
| GGAATTCGATAAAGTTCAAG+TGG | 0.574985 | 4_3:+62400109 | None:intergenic |
| AATTTATAGTGTCACCTGCA+AGG | 0.580808 | 4_3:+62400313 | None:intergenic |
| AAGTTGATGGAAATAAGCTA+TGG | 0.582461 | 4_3:-62400463 | Msa0654100:CDS |
| TTGAGACAGAAAGAAAGAGA+AGG | 0.583322 | 4_3:-62401244 | Msa0654100:CDS |
| AACAAGCACCGTGATAATGA+TGG | 0.583729 | 4_3:-62401296 | Msa0654100:CDS |
| TGTGTGTCTATGGAAGAGTT+GGG | 0.584878 | 4_3:-62401362 | Msa0654100:CDS |
| TTGGGACACCATCATTATCA+CGG | 0.595132 | 4_3:+62401288 | None:intergenic |
| TGAGACAGAAAGAAAGAGAA+GGG | 0.595420 | 4_3:-62401243 | Msa0654100:CDS |
| GCAATAGGGGAAACTGGAGA+AGG | 0.660867 | 4_3:-62401319 | Msa0654100:CDS |
| TCATTGAGAAGAAAAGAGGA+AGG | 0.693261 | 4_3:-62400430 | Msa0654100:CDS |
| TTGATGAGATGAATAAAATG+GGG | 0.713073 | 4_3:-62400605 | Msa0654100:CDS |
| TTATAGTGTCACCTGCAAGG+AGG | 0.739971 | 4_3:+62400316 | None:intergenic |
| CTGCCATAGTAGTAACACTG+AGG | 0.765658 | 4_3:+62400357 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAATAATTAGGTCATA+CGG | + | chr4_3:62400569-62400588 | None:intergenic | 15.0% |
| !!! | AGTTTTTAATTAGTACATTA+TGG | - | chr4_3:62400674-62400693 | Msa0654100:CDS | 15.0% |
| !!! | ATTCTATTTTTGTTATTTTC+AGG | - | chr4_3:62401333-62401352 | Msa0654100:CDS | 15.0% |
| !! | ATTATAATAATTAGGTCATA+CGG | + | chr4_3:62400569-62400588 | None:intergenic | 15.0% |
| !!! | AGTTTTTAATTAGTACATTA+TGG | - | chr4_3:62400674-62400693 | Msa0654100:CDS | 15.0% |
| !!! | ATTCTATTTTTGTTATTTTC+AGG | - | chr4_3:62401333-62401352 | Msa0654100:CDS | 15.0% |
| !! | TTTCATGATTTATCATCTAT+TGG | - | chr4_3:62400350-62400369 | Msa0654100:CDS | 20.0% |
| !! | ATATAGTTTAGAGGATTTAA+TGG | + | chr4_3:62400388-62400407 | None:intergenic | 20.0% |
| !! | GATAATGATATATAGTTTAG+AGG | + | chr4_3:62400397-62400416 | None:intergenic | 20.0% |
| !!! | GTTCATCTAAAATCAAATTT+AGG | + | chr4_3:62400715-62400734 | None:intergenic | 20.0% |
| !!! | ATATGTTCTTTTAGTAATGT+TGG | - | chr4_3:62400956-62400975 | Msa0654100:intron | 20.0% |
| !!! | TATGTTCTTTTAGTAATGTT+GGG | - | chr4_3:62400957-62400976 | Msa0654100:intron | 20.0% |
| !! | TTTCATGATTTATCATCTAT+TGG | - | chr4_3:62400350-62400369 | Msa0654100:CDS | 20.0% |
| !! | ATATAGTTTAGAGGATTTAA+TGG | + | chr4_3:62400388-62400407 | None:intergenic | 20.0% |
| !! | GATAATGATATATAGTTTAG+AGG | + | chr4_3:62400397-62400416 | None:intergenic | 20.0% |
| !!! | GTTCATCTAAAATCAAATTT+AGG | + | chr4_3:62400715-62400734 | None:intergenic | 20.0% |
| !!! | ATATGTTCTTTTAGTAATGT+TGG | - | chr4_3:62400956-62400975 | Msa0654100:intron | 20.0% |
| !!! | TATGTTCTTTTAGTAATGTT+GGG | - | chr4_3:62400957-62400976 | Msa0654100:intron | 20.0% |
| ! | TGAAACATTTCATAGACATT+AGG | + | chr4_3:62400462-62400481 | None:intergenic | 25.0% |
| !! | TGTTGATGAGATGAATAAAA+TGG | - | chr4_3:62400872-62400891 | Msa0654100:intron | 25.0% |
| !! | GTTGATGAGATGAATAAAAT+GGG | - | chr4_3:62400873-62400892 | Msa0654100:intron | 25.0% |
| ! | TTGATGAGATGAATAAAATG+GGG | - | chr4_3:62400874-62400893 | Msa0654100:intron | 25.0% |
| !! | ATGTTCTTTTAGTAATGTTG+GGG | - | chr4_3:62400958-62400977 | Msa0654100:intron | 25.0% |
| ! | GAATGATTTGAACATTGAAA+TGG | - | chr4_3:62401095-62401114 | Msa0654100:intron | 25.0% |
| !!! | TTTTTGTTATTTTCAGGACA+TGG | - | chr4_3:62401339-62401358 | Msa0654100:CDS | 25.0% |
| !!! | TTTTGTTATTTTCAGGACAT+GGG | - | chr4_3:62401340-62401359 | Msa0654100:CDS | 25.0% |
| ! | TGAAACATTTCATAGACATT+AGG | + | chr4_3:62400462-62400481 | None:intergenic | 25.0% |
| !! | TGTTGATGAGATGAATAAAA+TGG | - | chr4_3:62400872-62400891 | Msa0654100:intron | 25.0% |
| !! | GTTGATGAGATGAATAAAAT+GGG | - | chr4_3:62400873-62400892 | Msa0654100:intron | 25.0% |
| ! | TTGATGAGATGAATAAAATG+GGG | - | chr4_3:62400874-62400893 | Msa0654100:intron | 25.0% |
| !! | ATGTTCTTTTAGTAATGTTG+GGG | - | chr4_3:62400958-62400977 | Msa0654100:intron | 25.0% |
| ! | GAATGATTTGAACATTGAAA+TGG | - | chr4_3:62401095-62401114 | Msa0654100:intron | 25.0% |
| !!! | TTTTTGTTATTTTCAGGACA+TGG | - | chr4_3:62401339-62401358 | Msa0654100:CDS | 25.0% |
| !!! | TTTTGTTATTTTCAGGACAT+GGG | - | chr4_3:62401340-62401359 | Msa0654100:CDS | 25.0% |
| GATGTTAGAGACTAAATTGA+CGG | + | chr4_3:62400511-62400530 | None:intergenic | 30.0% | |
| TATAGATCATGAGACTCATT+AGG | + | chr4_3:62400939-62400958 | None:intergenic | 30.0% | |
| TTGATACTTTCTATAGGAAG+AGG | - | chr4_3:62400981-62401000 | Msa0654100:intron | 30.0% | |
| !! | AAGTTGATGGAAATAAGCTA+TGG | - | chr4_3:62401016-62401035 | Msa0654100:intron | 30.0% |
| GATGTTAGAGACTAAATTGA+CGG | + | chr4_3:62400511-62400530 | None:intergenic | 30.0% | |
| TATAGATCATGAGACTCATT+AGG | + | chr4_3:62400939-62400958 | None:intergenic | 30.0% | |
| TTGATACTTTCTATAGGAAG+AGG | - | chr4_3:62400981-62401000 | Msa0654100:intron | 30.0% | |
| !! | AAGTTGATGGAAATAAGCTA+TGG | - | chr4_3:62401016-62401035 | Msa0654100:intron | 30.0% |
| CAATAGACTATGTGTGTCTA+TGG | - | chr4_3:62400107-62400126 | Msa0654100:CDS | 35.0% | |
| TTGGGTTTCAATGCTGAAAA+TGG | - | chr4_3:62400135-62400154 | Msa0654100:intron | 35.0% | |
| ATGCTGAAAATGGTAGCAAT+AGG | - | chr4_3:62400145-62400164 | Msa0654100:intron | 35.0% | |
| TGCTGAAAATGGTAGCAATA+GGG | - | chr4_3:62400146-62400165 | Msa0654100:intron | 35.0% | |
| ! | TCTTGGATGTGAACACTTTT+GGG | + | chr4_3:62400212-62400231 | None:intergenic | 35.0% |
| ! | TTCTTGGATGTGAACACTTT+TGG | + | chr4_3:62400213-62400232 | None:intergenic | 35.0% |
| TTCTCTTTCTTTCTGTCTCA+AGG | + | chr4_3:62400236-62400255 | None:intergenic | 35.0% | |
| TTGAGACAGAAAGAAAGAGA+AGG | - | chr4_3:62400235-62400254 | Msa0654100:intron | 35.0% | |
| TGAGACAGAAAGAAAGAGAA+GGG | - | chr4_3:62400236-62400255 | Msa0654100:intron | 35.0% | |
| GTGCTTACATTTGTGATGAT+TGG | + | chr4_3:62400303-62400322 | None:intergenic | 35.0% | |
| ! | ACGGATTTTCGTACACTATA+TGG | + | chr4_3:62400492-62400511 | None:intergenic | 35.0% |
| GAACAAAGCAAGCATTATTG+AGG | - | chr4_3:62400731-62400750 | Msa0654100:CDS | 35.0% | |
| AACTTCATGTTGCAACTTCA+TGG | + | chr4_3:62400772-62400791 | None:intergenic | 35.0% | |
| ! | TCAACTCTTTTCTCTCTTCT+TGG | + | chr4_3:62400828-62400847 | None:intergenic | 35.0% |
| GATGAATAAAATGGGGTTAC+AGG | - | chr4_3:62400881-62400900 | Msa0654100:intron | 35.0% | |
| !! | TTGGGGTTGATACTTTCTAT+AGG | - | chr4_3:62400975-62400994 | Msa0654100:intron | 35.0% |
| ATGCTCATTGAGAAGAAAAG+AGG | - | chr4_3:62401045-62401064 | Msa0654100:intron | 35.0% | |
| TCATTGAGAAGAAAAGAGGA+AGG | - | chr4_3:62401049-62401068 | Msa0654100:intron | 35.0% | |
| AATTTATAGTGTCACCTGCA+AGG | + | chr4_3:62401169-62401188 | None:intergenic | 35.0% | |
| GGAATTCGATAAAGTTCAAG+TGG | + | chr4_3:62401373-62401392 | None:intergenic | 35.0% | |
| CAATAGACTATGTGTGTCTA+TGG | - | chr4_3:62400107-62400126 | Msa0654100:CDS | 35.0% | |
| TTGGGTTTCAATGCTGAAAA+TGG | - | chr4_3:62400135-62400154 | Msa0654100:intron | 35.0% | |
| ATGCTGAAAATGGTAGCAAT+AGG | - | chr4_3:62400145-62400164 | Msa0654100:intron | 35.0% | |
| TGCTGAAAATGGTAGCAATA+GGG | - | chr4_3:62400146-62400165 | Msa0654100:intron | 35.0% | |
| ! | TCTTGGATGTGAACACTTTT+GGG | + | chr4_3:62400212-62400231 | None:intergenic | 35.0% |
| ! | TTCTTGGATGTGAACACTTT+TGG | + | chr4_3:62400213-62400232 | None:intergenic | 35.0% |
| TTCTCTTTCTTTCTGTCTCA+AGG | + | chr4_3:62400236-62400255 | None:intergenic | 35.0% | |
| TTGAGACAGAAAGAAAGAGA+AGG | - | chr4_3:62400235-62400254 | Msa0654100:intron | 35.0% | |
| TGAGACAGAAAGAAAGAGAA+GGG | - | chr4_3:62400236-62400255 | Msa0654100:intron | 35.0% | |
| GTGCTTACATTTGTGATGAT+TGG | + | chr4_3:62400303-62400322 | None:intergenic | 35.0% | |
| ! | ACGGATTTTCGTACACTATA+TGG | + | chr4_3:62400492-62400511 | None:intergenic | 35.0% |
| GAACAAAGCAAGCATTATTG+AGG | - | chr4_3:62400731-62400750 | Msa0654100:CDS | 35.0% | |
| AACTTCATGTTGCAACTTCA+TGG | + | chr4_3:62400772-62400791 | None:intergenic | 35.0% | |
| ! | TCAACTCTTTTCTCTCTTCT+TGG | + | chr4_3:62400828-62400847 | None:intergenic | 35.0% |
| GATGAATAAAATGGGGTTAC+AGG | - | chr4_3:62400881-62400900 | Msa0654100:intron | 35.0% | |
| !! | TTGGGGTTGATACTTTCTAT+AGG | - | chr4_3:62400975-62400994 | Msa0654100:intron | 35.0% |
| ATGCTCATTGAGAAGAAAAG+AGG | - | chr4_3:62401045-62401064 | Msa0654100:intron | 35.0% | |
| TCATTGAGAAGAAAAGAGGA+AGG | - | chr4_3:62401049-62401068 | Msa0654100:intron | 35.0% | |
| AATTTATAGTGTCACCTGCA+AGG | + | chr4_3:62401169-62401188 | None:intergenic | 35.0% | |
| GGAATTCGATAAAGTTCAAG+TGG | + | chr4_3:62401373-62401392 | None:intergenic | 35.0% | |
| ATGTGTGTCTATGGAAGAGT+TGG | - | chr4_3:62400116-62400135 | Msa0654100:CDS | 40.0% | |
| TGTGTGTCTATGGAAGAGTT+GGG | - | chr4_3:62400117-62400136 | Msa0654100:CDS | 40.0% | |
| GCTGAAAATGGTAGCAATAG+GGG | - | chr4_3:62400147-62400166 | Msa0654100:intron | 40.0% | |
| ! | AACAAGCACCGTGATAATGA+TGG | - | chr4_3:62400183-62400202 | Msa0654100:intron | 40.0% |
| TTGGGACACCATCATTATCA+CGG | + | chr4_3:62400194-62400213 | None:intergenic | 40.0% | |
| TCTTTCTGTCTCAAGGTTCT+TGG | + | chr4_3:62400229-62400248 | None:intergenic | 40.0% | |
| ! | GAAACTCACTAGCAGACTTT+TGG | - | chr4_3:62400260-62400279 | Msa0654100:intron | 40.0% |
| AGTCTCACAATAGAGCTTGA+TGG | - | chr4_3:62400795-62400814 | Msa0654100:intron | 40.0% | |
| CACAATAGAGCTTGATGGAA+TGG | - | chr4_3:62400800-62400819 | Msa0654100:intron | 40.0% | |
| !! | GCAGAAGACTCTCTTTGTTT+TGG | + | chr4_3:62400852-62400871 | None:intergenic | 40.0% |
| ! | AGACCTCAGTGTTACTACTA+TGG | - | chr4_3:62401119-62401138 | Msa0654100:intron | 40.0% |
| !!! | TGTTATTTTCAGGACATGGG+TGG | - | chr4_3:62401343-62401362 | Msa0654100:CDS | 40.0% |
| ATGTGTGTCTATGGAAGAGT+TGG | - | chr4_3:62400116-62400135 | Msa0654100:CDS | 40.0% | |
| TGTGTGTCTATGGAAGAGTT+GGG | - | chr4_3:62400117-62400136 | Msa0654100:CDS | 40.0% | |
| GCTGAAAATGGTAGCAATAG+GGG | - | chr4_3:62400147-62400166 | Msa0654100:intron | 40.0% | |
| ! | AACAAGCACCGTGATAATGA+TGG | - | chr4_3:62400183-62400202 | Msa0654100:intron | 40.0% |
| TTGGGACACCATCATTATCA+CGG | + | chr4_3:62400194-62400213 | None:intergenic | 40.0% | |
| TCTTTCTGTCTCAAGGTTCT+TGG | + | chr4_3:62400229-62400248 | None:intergenic | 40.0% | |
| ! | GAAACTCACTAGCAGACTTT+TGG | - | chr4_3:62400260-62400279 | Msa0654100:intron | 40.0% |
| AGTCTCACAATAGAGCTTGA+TGG | - | chr4_3:62400795-62400814 | Msa0654100:intron | 40.0% | |
| CACAATAGAGCTTGATGGAA+TGG | - | chr4_3:62400800-62400819 | Msa0654100:intron | 40.0% | |
| !! | GCAGAAGACTCTCTTTGTTT+TGG | + | chr4_3:62400852-62400871 | None:intergenic | 40.0% |
| ! | AGACCTCAGTGTTACTACTA+TGG | - | chr4_3:62401119-62401138 | Msa0654100:intron | 40.0% |
| !!! | TGTTATTTTCAGGACATGGG+TGG | - | chr4_3:62401343-62401362 | Msa0654100:CDS | 40.0% |
| ATGGTAGCAATAGGGGAAAC+TGG | - | chr4_3:62400154-62400173 | Msa0654100:intron | 45.0% | |
| !!! | CTAGCAGACTTTTGGTGCTT+AGG | - | chr4_3:62400268-62400287 | Msa0654100:intron | 45.0% |
| ! | CTTTCTATAGGAAGAGGTGC+AGG | - | chr4_3:62400987-62401006 | Msa0654100:intron | 45.0% |
| GTGCAGGTAGCAAAAGTTGA+TGG | - | chr4_3:62401003-62401022 | Msa0654100:intron | 45.0% | |
| CTGCCATAGTAGTAACACTG+AGG | + | chr4_3:62401125-62401144 | None:intergenic | 45.0% | |
| ! | CTCAGTGTTACTACTATGGC+AGG | - | chr4_3:62401123-62401142 | Msa0654100:intron | 45.0% |
| TTATAGTGTCACCTGCAAGG+AGG | + | chr4_3:62401166-62401185 | None:intergenic | 45.0% | |
| ATGGTAGCAATAGGGGAAAC+TGG | - | chr4_3:62400154-62400173 | Msa0654100:intron | 45.0% | |
| !!! | CTAGCAGACTTTTGGTGCTT+AGG | - | chr4_3:62400268-62400287 | Msa0654100:intron | 45.0% |
| ! | CTTTCTATAGGAAGAGGTGC+AGG | - | chr4_3:62400987-62401006 | Msa0654100:intron | 45.0% |
| GTGCAGGTAGCAAAAGTTGA+TGG | - | chr4_3:62401003-62401022 | Msa0654100:intron | 45.0% | |
| CTGCCATAGTAGTAACACTG+AGG | + | chr4_3:62401125-62401144 | None:intergenic | 45.0% | |
| ! | CTCAGTGTTACTACTATGGC+AGG | - | chr4_3:62401123-62401142 | Msa0654100:intron | 45.0% |
| TTATAGTGTCACCTGCAAGG+AGG | + | chr4_3:62401166-62401185 | None:intergenic | 45.0% | |
| !! | ACTAAATAATTATAATAATT+AGG | + | chr4_3:62400577-62400596 | None:intergenic | 5.0% |
| !!! | TATTATAATTATTTAGTTTA+TGG | - | chr4_3:62400580-62400599 | Msa0654100:intron | 5.0% |
| !! | ACTAAATAATTATAATAATT+AGG | + | chr4_3:62400577-62400596 | None:intergenic | 5.0% |
| !!! | TATTATAATTATTTAGTTTA+TGG | - | chr4_3:62400580-62400599 | Msa0654100:intron | 5.0% |
| GCAATAGGGGAAACTGGAGA+AGG | - | chr4_3:62400160-62400179 | Msa0654100:intron | 50.0% | |
| TCTCATTACAGCCTCCTTGC+AGG | - | chr4_3:62401152-62401171 | Msa0654100:intron | 50.0% | |
| GCAATAGGGGAAACTGGAGA+AGG | - | chr4_3:62400160-62400179 | Msa0654100:intron | 50.0% | |
| TCTCATTACAGCCTCCTTGC+AGG | - | chr4_3:62401152-62401171 | Msa0654100:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 62400090 | 62401411 | 62400090 | ID=Msa0654100;Name=Msa0654100 |
| chr4_3 | mRNA | 62400090 | 62401411 | 62400090 | ID=Msa0654100-mRNA-1;Parent=Msa0654100;Name=Msa0654100-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0|0|1|1|1|4|0|210 |
| chr4_3 | exon | 62401187 | 62401411 | 62401187 | ID=Msa0654100-mRNA-1:exon:17340;Parent=Msa0654100-mRNA-1 |
| chr4_3 | exon | 62400599 | 62400772 | 62400599 | ID=Msa0654100-mRNA-1:exon:17339;Parent=Msa0654100-mRNA-1 |
| chr4_3 | exon | 62400328 | 62400504 | 62400328 | ID=Msa0654100-mRNA-1:exon:17338;Parent=Msa0654100-mRNA-1 |
| chr4_3 | exon | 62400090 | 62400146 | 62400090 | ID=Msa0654100-mRNA-1:exon:17337;Parent=Msa0654100-mRNA-1 |
| chr4_3 | CDS | 62401187 | 62401411 | 62401187 | ID=Msa0654100-mRNA-1:cds;Parent=Msa0654100-mRNA-1 |
| chr4_3 | CDS | 62400599 | 62400772 | 62400599 | ID=Msa0654100-mRNA-1:cds;Parent=Msa0654100-mRNA-1 |
| chr4_3 | CDS | 62400328 | 62400504 | 62400328 | ID=Msa0654100-mRNA-1:cds;Parent=Msa0654100-mRNA-1 |
| chr4_3 | CDS | 62400090 | 62400146 | 62400090 | ID=Msa0654100-mRNA-1:cds;Parent=Msa0654100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
