Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380800 | XP_013457137.1 | 96.667 | 210 | 7 | 0 | 1 | 210 | 1 | 210 | 6.11e-147 | 417 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380800 | sp|O81900|DYT1_ARATH | 45.283 | 159 | 75 | 2 | 44 | 192 | 29 | 185 | 8.31e-38 | 133 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380800 | A0A072UQ23 | 96.667 | 210 | 7 | 0 | 1 | 210 | 1 | 210 | 2.92e-147 | 417 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1380800 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0620350 | Msa1380800 | 0.999877 | 0.000000e+00 | -8.615850e-47 |
| Msa0654100 | Msa1380800 | 0.956765 | 1.358981e-114 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380800 | MtrunA17_Chr4g0048851 | 96.667 | 210 | 7 | 0 | 1 | 210 | 1 | 210 | 5.62e-151 | 417 |
| Msa1380800 | MtrunA17_Chr4g0048891 | 51.111 | 135 | 62 | 3 | 1 | 133 | 1 | 133 | 3.99e-36 | 124 |
| Msa1380800 | MtrunA17_Chr8g0365711 | 31.429 | 175 | 106 | 3 | 42 | 202 | 239 | 413 | 8.93e-20 | 86.3 |
| Msa1380800 | MtrunA17_Chr1g0211081 | 30.526 | 190 | 92 | 4 | 27 | 183 | 304 | 486 | 6.80e-18 | 81.3 |
| Msa1380800 | MtrunA17_Chr2g0320291 | 31.737 | 167 | 109 | 3 | 37 | 198 | 121 | 287 | 8.34e-16 | 74.3 |
| Msa1380800 | MtrunA17_Chr4g0028071 | 29.940 | 167 | 96 | 5 | 46 | 197 | 148 | 308 | 1.73e-15 | 73.9 |
| Msa1380800 | MtrunA17_Chr2g0298751 | 27.108 | 166 | 103 | 2 | 45 | 192 | 50 | 215 | 1.02e-11 | 62.4 |
| Msa1380800 | MtrunA17_Chr3g0131691 | 45.055 | 91 | 46 | 2 | 14 | 104 | 269 | 355 | 8.90e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380800 | AT4G21330.1 | 45.283 | 159 | 75 | 2 | 44 | 192 | 29 | 185 | 8.45e-39 | 133 |
| Msa1380800 | AT2G16910.1 | 32.298 | 161 | 82 | 3 | 46 | 179 | 313 | 473 | 9.88e-18 | 81.3 |
| Msa1380800 | AT5G57150.3 | 30.769 | 169 | 103 | 3 | 38 | 192 | 46 | 214 | 1.75e-14 | 69.7 |
| Msa1380800 | AT5G57150.5 | 30.769 | 169 | 103 | 3 | 38 | 192 | 45 | 213 | 1.97e-14 | 69.7 |
| Msa1380800 | AT5G57150.2 | 30.769 | 169 | 103 | 3 | 38 | 192 | 46 | 214 | 2.15e-14 | 69.7 |
| Msa1380800 | AT5G57150.1 | 30.769 | 169 | 103 | 3 | 38 | 192 | 45 | 213 | 3.46e-14 | 69.7 |
| Msa1380800 | AT5G57150.4 | 30.769 | 169 | 103 | 3 | 38 | 192 | 46 | 214 | 4.47e-14 | 69.3 |
| Msa1380800 | AT2G28160.2 | 27.869 | 183 | 119 | 5 | 21 | 191 | 103 | 284 | 6.96e-13 | 66.6 |
| Msa1380800 | AT2G28160.1 | 27.869 | 183 | 119 | 5 | 21 | 191 | 103 | 284 | 8.07e-13 | 66.6 |
| Msa1380800 | AT1G10610.2 | 28.571 | 147 | 96 | 1 | 44 | 181 | 231 | 377 | 8.17e-13 | 67.0 |
| Msa1380800 | AT1G10610.1 | 28.571 | 147 | 96 | 1 | 44 | 181 | 261 | 407 | 1.02e-12 | 66.6 |
| Msa1380800 | AT1G10610.3 | 28.571 | 147 | 96 | 1 | 44 | 181 | 164 | 310 | 1.42e-12 | 65.9 |
| Msa1380800 | AT1G12860.1 | 29.870 | 154 | 93 | 2 | 46 | 186 | 266 | 417 | 2.88e-12 | 65.5 |
| Msa1380800 | AT1G12860.2 | 29.870 | 154 | 93 | 2 | 46 | 186 | 266 | 417 | 2.98e-12 | 65.1 |
| Msa1380800 | AT3G26744.6 | 30.769 | 156 | 93 | 3 | 46 | 186 | 306 | 461 | 2.55e-11 | 62.4 |
| Msa1380800 | AT3G26744.1 | 30.769 | 156 | 93 | 3 | 46 | 186 | 306 | 461 | 2.64e-11 | 62.4 |
| Msa1380800 | AT3G26744.4 | 30.769 | 156 | 93 | 3 | 46 | 186 | 306 | 461 | 2.64e-11 | 62.4 |
| Msa1380800 | AT3G26744.2 | 30.769 | 156 | 93 | 3 | 46 | 186 | 306 | 461 | 2.64e-11 | 62.4 |
| Msa1380800 | AT4G37850.2 | 31.818 | 154 | 80 | 4 | 51 | 188 | 156 | 300 | 2.87e-11 | 62.0 |
| Msa1380800 | AT4G37850.1 | 31.818 | 154 | 80 | 4 | 51 | 188 | 156 | 300 | 2.87e-11 | 62.0 |
Find 43 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAACTATTATCAAGTATT+AGG | 0.172705 | tig0020408:-47110 | None:intergenic |
| TCTTTCTGTCTCAAGGTTCT+TGG | 0.203142 | tig0020408:+48274 | None:intergenic |
| TTCTTGGATGTGAACACTTT+TGG | 0.236396 | tig0020408:+48290 | None:intergenic |
| GATGAATAAAATGGGGTTAC+AGG | 0.250695 | tig0020408:-47619 | Msa1380800:intron |
| AACTTCATGTTGCAACTTCA+TGG | 0.287708 | tig0020408:+47731 | None:intergenic |
| TGTTGATGAGATGAATAAAA+TGG | 0.288149 | tig0020408:-47628 | Msa1380800:CDS |
| TTGGGTTTCAATGCTGAAAA+TGG | 0.303250 | tig0020408:-48365 | Msa1380800:CDS |
| GCAGAAGACTCTCTTTGTTT+TGG | 0.306313 | tig0020408:+47651 | None:intergenic |
| CCAACTATTATCAAGTATTA+GGG | 0.313449 | tig0020408:-47109 | None:intergenic |
| CCCTAATACTTGATAATAGT+TGG | 0.313701 | tig0020408:+47109 | None:intergenic |
| CAATAGACTATGTGTGTCTA+TGG | 0.334837 | tig0020408:-48393 | Msa1380800:CDS |
| TTCTCTTTCTTTCTGTCTCA+AGG | 0.354427 | tig0020408:+48267 | None:intergenic |
| ATGCTGAAAATGGTAGCAAT+AGG | 0.358285 | tig0020408:-48355 | Msa1380800:CDS |
| TCTCATTACAGCCTCCTTGC+AGG | 0.362149 | tig0020408:-47348 | Msa1380800:intron |
| ATGGTAGCAATAGGGGAAAC+TGG | 0.388089 | tig0020408:-48346 | Msa1380800:CDS |
| GAAACTCACTAGCAGACTTT+TGG | 0.388264 | tig0020408:-48240 | Msa1380800:CDS |
| GTGCTTACATTTGTGATGAT+TGG | 0.399278 | tig0020408:+48200 | None:intergenic |
| TGCTGAAAATGGTAGCAATA+GGG | 0.418097 | tig0020408:-48354 | Msa1380800:CDS |
| GTTGATGAGATGAATAAAAT+GGG | 0.433684 | tig0020408:-47627 | Msa1380800:CDS |
| AGACCTCAGTGTTACTACTA+TGG | 0.457876 | tig0020408:-47381 | Msa1380800:CDS |
| GAATGATTTGAACATTGAAA+TGG | 0.483853 | tig0020408:-47405 | Msa1380800:CDS |
| CACAATAGAGCTTGATGGAA+TGG | 0.493719 | tig0020408:-47700 | Msa1380800:CDS |
| AGTCTCACAATAGAGCTTGA+TGG | 0.495480 | tig0020408:-47705 | Msa1380800:CDS |
| GTGCAGGTAGCAAAAGTTGA+TGG | 0.518362 | tig0020408:-47497 | Msa1380800:CDS |
| ATGCTCATTGAGAAGAAAAG+AGG | 0.521277 | tig0020408:-47455 | Msa1380800:CDS |
| ATGTGTGTCTATGGAAGAGT+TGG | 0.537161 | tig0020408:-48384 | Msa1380800:CDS |
| GAACAAAGCAAGCATTATTG+AGG | 0.548126 | tig0020408:-47769 | Msa1380800:CDS |
| CTTTCTATAGGAAGAGGTGC+AGG | 0.549579 | tig0020408:-47513 | Msa1380800:intron |
| CTCAGTGTTACTACTATGGC+AGG | 0.550252 | tig0020408:-47377 | Msa1380800:CDS |
| GCTGAAAATGGTAGCAATAG+GGG | 0.556414 | tig0020408:-48353 | Msa1380800:CDS |
| GGAATTCGATAAAGTTCAAG+TGG | 0.574985 | tig0020408:+47130 | None:intergenic |
| AATTTATAGTGTCACCTGCA+AGG | 0.580808 | tig0020408:+47334 | None:intergenic |
| AAGTTGATGGAAATAAGCTA+TGG | 0.582461 | tig0020408:-47484 | Msa1380800:CDS |
| TTGAGACAGAAAGAAAGAGA+AGG | 0.583322 | tig0020408:-48265 | Msa1380800:CDS |
| AACAAGCACCGTGATAATGA+TGG | 0.583729 | tig0020408:-48317 | Msa1380800:CDS |
| TGTGTGTCTATGGAAGAGTT+GGG | 0.584878 | tig0020408:-48383 | Msa1380800:CDS |
| TTGGGACACCATCATTATCA+CGG | 0.595132 | tig0020408:+48309 | None:intergenic |
| TGAGACAGAAAGAAAGAGAA+GGG | 0.595420 | tig0020408:-48264 | Msa1380800:CDS |
| GCAATAGGGGAAACTGGAGA+AGG | 0.660867 | tig0020408:-48340 | Msa1380800:CDS |
| TCATTGAGAAGAAAAGAGGA+AGG | 0.693261 | tig0020408:-47451 | Msa1380800:CDS |
| TTGATGAGATGAATAAAATG+GGG | 0.713073 | tig0020408:-47626 | Msa1380800:CDS |
| TTATAGTGTCACCTGCAAGG+AGG | 0.739971 | tig0020408:+47337 | None:intergenic |
| CTGCCATAGTAGTAACACTG+AGG | 0.765658 | tig0020408:+47378 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAATAATTAGGTCATA+CGG | + | tig0020408:47590-47609 | None:intergenic | 15.0% |
| !!! | AGTTTTTAATTAGTACATTA+TGG | - | tig0020408:47695-47714 | Msa1380800:CDS | 15.0% |
| !!! | ATTCTATTTTTGTTATTTTC+AGG | - | tig0020408:48354-48373 | Msa1380800:CDS | 15.0% |
| !! | ATTATAATAATTAGGTCATA+CGG | + | tig0020408:47590-47609 | None:intergenic | 15.0% |
| !!! | AGTTTTTAATTAGTACATTA+TGG | - | tig0020408:47695-47714 | Msa1380800:CDS | 15.0% |
| !!! | ATTCTATTTTTGTTATTTTC+AGG | - | tig0020408:48354-48373 | Msa1380800:CDS | 15.0% |
| !! | TTTCATGATTTATCATCTAT+TGG | - | tig0020408:47371-47390 | Msa1380800:CDS | 20.0% |
| !! | ATATAGTTTAGAGGATTTAA+TGG | + | tig0020408:47409-47428 | None:intergenic | 20.0% |
| !! | GATAATGATATATAGTTTAG+AGG | + | tig0020408:47418-47437 | None:intergenic | 20.0% |
| !!! | GTTCATCTAAAATCAAATTT+AGG | + | tig0020408:47736-47755 | None:intergenic | 20.0% |
| !!! | ATATGTTCTTTTAGTAATGT+TGG | - | tig0020408:47977-47996 | Msa1380800:intron | 20.0% |
| !!! | TATGTTCTTTTAGTAATGTT+GGG | - | tig0020408:47978-47997 | Msa1380800:intron | 20.0% |
| !! | TTTCATGATTTATCATCTAT+TGG | - | tig0020408:47371-47390 | Msa1380800:CDS | 20.0% |
| !! | ATATAGTTTAGAGGATTTAA+TGG | + | tig0020408:47409-47428 | None:intergenic | 20.0% |
| !! | GATAATGATATATAGTTTAG+AGG | + | tig0020408:47418-47437 | None:intergenic | 20.0% |
| !!! | GTTCATCTAAAATCAAATTT+AGG | + | tig0020408:47736-47755 | None:intergenic | 20.0% |
| !!! | ATATGTTCTTTTAGTAATGT+TGG | - | tig0020408:47977-47996 | Msa1380800:intron | 20.0% |
| !!! | TATGTTCTTTTAGTAATGTT+GGG | - | tig0020408:47978-47997 | Msa1380800:intron | 20.0% |
| ! | TGAAACATTTCATAGACATT+AGG | + | tig0020408:47483-47502 | None:intergenic | 25.0% |
| !! | TGTTGATGAGATGAATAAAA+TGG | - | tig0020408:47893-47912 | Msa1380800:intron | 25.0% |
| !! | GTTGATGAGATGAATAAAAT+GGG | - | tig0020408:47894-47913 | Msa1380800:intron | 25.0% |
| ! | TTGATGAGATGAATAAAATG+GGG | - | tig0020408:47895-47914 | Msa1380800:intron | 25.0% |
| !! | ATGTTCTTTTAGTAATGTTG+GGG | - | tig0020408:47979-47998 | Msa1380800:intron | 25.0% |
| ! | GAATGATTTGAACATTGAAA+TGG | - | tig0020408:48116-48135 | Msa1380800:intron | 25.0% |
| !!! | TTTTTGTTATTTTCAGGACA+TGG | - | tig0020408:48360-48379 | Msa1380800:CDS | 25.0% |
| !!! | TTTTGTTATTTTCAGGACAT+GGG | - | tig0020408:48361-48380 | Msa1380800:CDS | 25.0% |
| ! | TGAAACATTTCATAGACATT+AGG | + | tig0020408:47483-47502 | None:intergenic | 25.0% |
| !! | TGTTGATGAGATGAATAAAA+TGG | - | tig0020408:47893-47912 | Msa1380800:intron | 25.0% |
| !! | GTTGATGAGATGAATAAAAT+GGG | - | tig0020408:47894-47913 | Msa1380800:intron | 25.0% |
| ! | TTGATGAGATGAATAAAATG+GGG | - | tig0020408:47895-47914 | Msa1380800:intron | 25.0% |
| !! | ATGTTCTTTTAGTAATGTTG+GGG | - | tig0020408:47979-47998 | Msa1380800:intron | 25.0% |
| ! | GAATGATTTGAACATTGAAA+TGG | - | tig0020408:48116-48135 | Msa1380800:intron | 25.0% |
| !!! | TTTTTGTTATTTTCAGGACA+TGG | - | tig0020408:48360-48379 | Msa1380800:CDS | 25.0% |
| !!! | TTTTGTTATTTTCAGGACAT+GGG | - | tig0020408:48361-48380 | Msa1380800:CDS | 25.0% |
| GATGTTAGAGACTAAATTGA+CGG | + | tig0020408:47532-47551 | None:intergenic | 30.0% | |
| TATAGATCATGAGACTCATT+AGG | + | tig0020408:47960-47979 | None:intergenic | 30.0% | |
| TTGATACTTTCTATAGGAAG+AGG | - | tig0020408:48002-48021 | Msa1380800:intron | 30.0% | |
| !! | AAGTTGATGGAAATAAGCTA+TGG | - | tig0020408:48037-48056 | Msa1380800:intron | 30.0% |
| GATGTTAGAGACTAAATTGA+CGG | + | tig0020408:47532-47551 | None:intergenic | 30.0% | |
| TATAGATCATGAGACTCATT+AGG | + | tig0020408:47960-47979 | None:intergenic | 30.0% | |
| TTGATACTTTCTATAGGAAG+AGG | - | tig0020408:48002-48021 | Msa1380800:intron | 30.0% | |
| !! | AAGTTGATGGAAATAAGCTA+TGG | - | tig0020408:48037-48056 | Msa1380800:intron | 30.0% |
| CAATAGACTATGTGTGTCTA+TGG | - | tig0020408:47128-47147 | Msa1380800:CDS | 35.0% | |
| TTGGGTTTCAATGCTGAAAA+TGG | - | tig0020408:47156-47175 | Msa1380800:intron | 35.0% | |
| ATGCTGAAAATGGTAGCAAT+AGG | - | tig0020408:47166-47185 | Msa1380800:intron | 35.0% | |
| TGCTGAAAATGGTAGCAATA+GGG | - | tig0020408:47167-47186 | Msa1380800:intron | 35.0% | |
| ! | TCTTGGATGTGAACACTTTT+GGG | + | tig0020408:47233-47252 | None:intergenic | 35.0% |
| ! | TTCTTGGATGTGAACACTTT+TGG | + | tig0020408:47234-47253 | None:intergenic | 35.0% |
| TTCTCTTTCTTTCTGTCTCA+AGG | + | tig0020408:47257-47276 | None:intergenic | 35.0% | |
| TTGAGACAGAAAGAAAGAGA+AGG | - | tig0020408:47256-47275 | Msa1380800:intron | 35.0% | |
| TGAGACAGAAAGAAAGAGAA+GGG | - | tig0020408:47257-47276 | Msa1380800:intron | 35.0% | |
| GTGCTTACATTTGTGATGAT+TGG | + | tig0020408:47324-47343 | None:intergenic | 35.0% | |
| ! | ACGGATTTTCGTACACTATA+TGG | + | tig0020408:47513-47532 | None:intergenic | 35.0% |
| GAACAAAGCAAGCATTATTG+AGG | - | tig0020408:47752-47771 | Msa1380800:CDS | 35.0% | |
| AACTTCATGTTGCAACTTCA+TGG | + | tig0020408:47793-47812 | None:intergenic | 35.0% | |
| ! | TCAACTCTTTTCTCTCTTCT+TGG | + | tig0020408:47849-47868 | None:intergenic | 35.0% |
| GATGAATAAAATGGGGTTAC+AGG | - | tig0020408:47902-47921 | Msa1380800:intron | 35.0% | |
| !! | TTGGGGTTGATACTTTCTAT+AGG | - | tig0020408:47996-48015 | Msa1380800:intron | 35.0% |
| ATGCTCATTGAGAAGAAAAG+AGG | - | tig0020408:48066-48085 | Msa1380800:intron | 35.0% | |
| TCATTGAGAAGAAAAGAGGA+AGG | - | tig0020408:48070-48089 | Msa1380800:intron | 35.0% | |
| AATTTATAGTGTCACCTGCA+AGG | + | tig0020408:48190-48209 | None:intergenic | 35.0% | |
| GGAATTCGATAAAGTTCAAG+TGG | + | tig0020408:48394-48413 | None:intergenic | 35.0% | |
| CAATAGACTATGTGTGTCTA+TGG | - | tig0020408:47128-47147 | Msa1380800:CDS | 35.0% | |
| TTGGGTTTCAATGCTGAAAA+TGG | - | tig0020408:47156-47175 | Msa1380800:intron | 35.0% | |
| ATGCTGAAAATGGTAGCAAT+AGG | - | tig0020408:47166-47185 | Msa1380800:intron | 35.0% | |
| TGCTGAAAATGGTAGCAATA+GGG | - | tig0020408:47167-47186 | Msa1380800:intron | 35.0% | |
| ! | TCTTGGATGTGAACACTTTT+GGG | + | tig0020408:47233-47252 | None:intergenic | 35.0% |
| ! | TTCTTGGATGTGAACACTTT+TGG | + | tig0020408:47234-47253 | None:intergenic | 35.0% |
| TTCTCTTTCTTTCTGTCTCA+AGG | + | tig0020408:47257-47276 | None:intergenic | 35.0% | |
| TTGAGACAGAAAGAAAGAGA+AGG | - | tig0020408:47256-47275 | Msa1380800:intron | 35.0% | |
| TGAGACAGAAAGAAAGAGAA+GGG | - | tig0020408:47257-47276 | Msa1380800:intron | 35.0% | |
| GTGCTTACATTTGTGATGAT+TGG | + | tig0020408:47324-47343 | None:intergenic | 35.0% | |
| ! | ACGGATTTTCGTACACTATA+TGG | + | tig0020408:47513-47532 | None:intergenic | 35.0% |
| GAACAAAGCAAGCATTATTG+AGG | - | tig0020408:47752-47771 | Msa1380800:CDS | 35.0% | |
| AACTTCATGTTGCAACTTCA+TGG | + | tig0020408:47793-47812 | None:intergenic | 35.0% | |
| ! | TCAACTCTTTTCTCTCTTCT+TGG | + | tig0020408:47849-47868 | None:intergenic | 35.0% |
| GATGAATAAAATGGGGTTAC+AGG | - | tig0020408:47902-47921 | Msa1380800:intron | 35.0% | |
| !! | TTGGGGTTGATACTTTCTAT+AGG | - | tig0020408:47996-48015 | Msa1380800:intron | 35.0% |
| ATGCTCATTGAGAAGAAAAG+AGG | - | tig0020408:48066-48085 | Msa1380800:intron | 35.0% | |
| TCATTGAGAAGAAAAGAGGA+AGG | - | tig0020408:48070-48089 | Msa1380800:intron | 35.0% | |
| AATTTATAGTGTCACCTGCA+AGG | + | tig0020408:48190-48209 | None:intergenic | 35.0% | |
| GGAATTCGATAAAGTTCAAG+TGG | + | tig0020408:48394-48413 | None:intergenic | 35.0% | |
| ATGTGTGTCTATGGAAGAGT+TGG | - | tig0020408:47137-47156 | Msa1380800:CDS | 40.0% | |
| TGTGTGTCTATGGAAGAGTT+GGG | - | tig0020408:47138-47157 | Msa1380800:CDS | 40.0% | |
| GCTGAAAATGGTAGCAATAG+GGG | - | tig0020408:47168-47187 | Msa1380800:intron | 40.0% | |
| ! | AACAAGCACCGTGATAATGA+TGG | - | tig0020408:47204-47223 | Msa1380800:intron | 40.0% |
| TTGGGACACCATCATTATCA+CGG | + | tig0020408:47215-47234 | None:intergenic | 40.0% | |
| TCTTTCTGTCTCAAGGTTCT+TGG | + | tig0020408:47250-47269 | None:intergenic | 40.0% | |
| ! | GAAACTCACTAGCAGACTTT+TGG | - | tig0020408:47281-47300 | Msa1380800:intron | 40.0% |
| AGTCTCACAATAGAGCTTGA+TGG | - | tig0020408:47816-47835 | Msa1380800:intron | 40.0% | |
| CACAATAGAGCTTGATGGAA+TGG | - | tig0020408:47821-47840 | Msa1380800:intron | 40.0% | |
| !! | GCAGAAGACTCTCTTTGTTT+TGG | + | tig0020408:47873-47892 | None:intergenic | 40.0% |
| ! | AGACCTCAGTGTTACTACTA+TGG | - | tig0020408:48140-48159 | Msa1380800:intron | 40.0% |
| !!! | TGTTATTTTCAGGACATGGG+TGG | - | tig0020408:48364-48383 | Msa1380800:CDS | 40.0% |
| ATGTGTGTCTATGGAAGAGT+TGG | - | tig0020408:47137-47156 | Msa1380800:CDS | 40.0% | |
| TGTGTGTCTATGGAAGAGTT+GGG | - | tig0020408:47138-47157 | Msa1380800:CDS | 40.0% | |
| GCTGAAAATGGTAGCAATAG+GGG | - | tig0020408:47168-47187 | Msa1380800:intron | 40.0% | |
| ! | AACAAGCACCGTGATAATGA+TGG | - | tig0020408:47204-47223 | Msa1380800:intron | 40.0% |
| TTGGGACACCATCATTATCA+CGG | + | tig0020408:47215-47234 | None:intergenic | 40.0% | |
| TCTTTCTGTCTCAAGGTTCT+TGG | + | tig0020408:47250-47269 | None:intergenic | 40.0% | |
| ! | GAAACTCACTAGCAGACTTT+TGG | - | tig0020408:47281-47300 | Msa1380800:intron | 40.0% |
| AGTCTCACAATAGAGCTTGA+TGG | - | tig0020408:47816-47835 | Msa1380800:intron | 40.0% | |
| CACAATAGAGCTTGATGGAA+TGG | - | tig0020408:47821-47840 | Msa1380800:intron | 40.0% | |
| !! | GCAGAAGACTCTCTTTGTTT+TGG | + | tig0020408:47873-47892 | None:intergenic | 40.0% |
| ! | AGACCTCAGTGTTACTACTA+TGG | - | tig0020408:48140-48159 | Msa1380800:intron | 40.0% |
| !!! | TGTTATTTTCAGGACATGGG+TGG | - | tig0020408:48364-48383 | Msa1380800:CDS | 40.0% |
| ATGGTAGCAATAGGGGAAAC+TGG | - | tig0020408:47175-47194 | Msa1380800:intron | 45.0% | |
| !!! | CTAGCAGACTTTTGGTGCTT+AGG | - | tig0020408:47289-47308 | Msa1380800:intron | 45.0% |
| ! | CTTTCTATAGGAAGAGGTGC+AGG | - | tig0020408:48008-48027 | Msa1380800:intron | 45.0% |
| GTGCAGGTAGCAAAAGTTGA+TGG | - | tig0020408:48024-48043 | Msa1380800:intron | 45.0% | |
| CTGCCATAGTAGTAACACTG+AGG | + | tig0020408:48146-48165 | None:intergenic | 45.0% | |
| ! | CTCAGTGTTACTACTATGGC+AGG | - | tig0020408:48144-48163 | Msa1380800:intron | 45.0% |
| TTATAGTGTCACCTGCAAGG+AGG | + | tig0020408:48187-48206 | None:intergenic | 45.0% | |
| ATGGTAGCAATAGGGGAAAC+TGG | - | tig0020408:47175-47194 | Msa1380800:intron | 45.0% | |
| !!! | CTAGCAGACTTTTGGTGCTT+AGG | - | tig0020408:47289-47308 | Msa1380800:intron | 45.0% |
| ! | CTTTCTATAGGAAGAGGTGC+AGG | - | tig0020408:48008-48027 | Msa1380800:intron | 45.0% |
| GTGCAGGTAGCAAAAGTTGA+TGG | - | tig0020408:48024-48043 | Msa1380800:intron | 45.0% | |
| CTGCCATAGTAGTAACACTG+AGG | + | tig0020408:48146-48165 | None:intergenic | 45.0% | |
| ! | CTCAGTGTTACTACTATGGC+AGG | - | tig0020408:48144-48163 | Msa1380800:intron | 45.0% |
| TTATAGTGTCACCTGCAAGG+AGG | + | tig0020408:48187-48206 | None:intergenic | 45.0% | |
| !! | ACTAAATAATTATAATAATT+AGG | + | tig0020408:47598-47617 | None:intergenic | 5.0% |
| !!! | TATTATAATTATTTAGTTTA+TGG | - | tig0020408:47601-47620 | Msa1380800:intron | 5.0% |
| !! | ACTAAATAATTATAATAATT+AGG | + | tig0020408:47598-47617 | None:intergenic | 5.0% |
| !!! | TATTATAATTATTTAGTTTA+TGG | - | tig0020408:47601-47620 | Msa1380800:intron | 5.0% |
| GCAATAGGGGAAACTGGAGA+AGG | - | tig0020408:47181-47200 | Msa1380800:intron | 50.0% | |
| TCTCATTACAGCCTCCTTGC+AGG | - | tig0020408:48173-48192 | Msa1380800:intron | 50.0% | |
| GCAATAGGGGAAACTGGAGA+AGG | - | tig0020408:47181-47200 | Msa1380800:intron | 50.0% | |
| TCTCATTACAGCCTCCTTGC+AGG | - | tig0020408:48173-48192 | Msa1380800:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020408 | gene | 47111 | 48432 | 47111 | ID=Msa1380800;Name=Msa1380800 |
| tig0020408 | mRNA | 47111 | 48432 | 47111 | ID=Msa1380800-mRNA-1;Parent=Msa1380800;Name=Msa1380800-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|4|0|210 |
| tig0020408 | exon | 48208 | 48432 | 48208 | ID=Msa1380800-mRNA-1:exon:7258;Parent=Msa1380800-mRNA-1 |
| tig0020408 | exon | 47620 | 47793 | 47620 | ID=Msa1380800-mRNA-1:exon:7257;Parent=Msa1380800-mRNA-1 |
| tig0020408 | exon | 47349 | 47525 | 47349 | ID=Msa1380800-mRNA-1:exon:7256;Parent=Msa1380800-mRNA-1 |
| tig0020408 | exon | 47111 | 47167 | 47111 | ID=Msa1380800-mRNA-1:exon:7255;Parent=Msa1380800-mRNA-1 |
| tig0020408 | CDS | 48208 | 48432 | 48208 | ID=Msa1380800-mRNA-1:cds;Parent=Msa1380800-mRNA-1 |
| tig0020408 | CDS | 47620 | 47793 | 47620 | ID=Msa1380800-mRNA-1:cds;Parent=Msa1380800-mRNA-1 |
| tig0020408 | CDS | 47349 | 47525 | 47349 | ID=Msa1380800-mRNA-1:cds;Parent=Msa1380800-mRNA-1 |
| tig0020408 | CDS | 47111 | 47167 | 47111 | ID=Msa1380800-mRNA-1:cds;Parent=Msa1380800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
