AlfalfaGEDB | Msa0622710

M. sativa cultivar zhongmu-4 / Msa0622710

KEGG: -
GO: -
PFAM: PF03018.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0622710	RHN82725.1	86.864	236	20	1	1	225	9	244	7.60e-135	389

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0622710	sp\|Q9LQQ0\|DIR25_ARATH	50.943	106	50	2	93	198	254	357	2.70e-23	99.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0045680	Msa0622710	0.873843	1.073658e-67	-8.615850e-47
Msa0622710	Msa0623250	0.813324	2.710913e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0622710	MtrunA17_Chr1g0212871	86.864	236	20	1	1	225	9	244	6.99e-139	389
Msa0622710	MtrunA17_Chr1g0212861	35.745	235	94	10	43	225	123	352	4.35e-24	98.2
Msa0622710	MtrunA17_Chr4g0030681	48.571	105	47	4	97	198	178	278	9.60e-23	93.6
Msa0622710	MtrunA17_Chr4g0030731	48.571	105	47	4	97	198	177	277	1.24e-22	93.6
Msa0622710	MtrunA17_Chr7g0221601	43.443	122	63	2	103	220	267	386	1.05e-21	92.0
Msa0622710	MtrunA17_Chr1g0169511	28.922	204	110	4	43	213	39	240	2.29e-16	75.5
Msa0622710	MtrunA17_Chr4g0030671	30.500	200	96	7	43	201	61	258	1.55e-15	73.6
Msa0622710	MtrunA17_Chr1g0169291	27.941	204	112	3	43	213	39	240	2.62e-15	72.8
Msa0622710	MtrunA17_Chr1g0169281	35.780	109	68	1	105	213	140	246	6.20e-14	68.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0622710	AT2G28670.2	51.887	106	49	2	93	198	91	194	8.18e-25	97.8
Msa0622710	AT1G07730.2	50.943	106	50	2	93	198	254	357	2.74e-24	99.8
Msa0622710	AT2G28670.1	51.887	106	49	2	93	198	301	404	6.56e-24	99.0
Msa0622710	AT2G39430.1	31.646	237	103	9	43	223	87	320	4.58e-21	89.7
Msa0622710	AT3G55230.1	29.958	237	109	8	43	224	70	304	7.50e-20	86.3
Msa0622710	AT4G13580.1	32.447	188	100	4	43	211	53	232	1.21e-19	84.7
Msa0622710	AT3G24020.1	32.500	200	108	5	43	223	52	243	1.23e-19	84.7

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Find 46 sgRNAs with CRISPR-Local

Find 66 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAAACTTGGAAAAGCACA+AGG	0.629760	4_2:-75431609	Msa0622710:CDS
ACACTTGATCTTTCCACCAT+TGG	0.449523	4_2:-75431735	Msa0622710:CDS
AGAAACTTGGAAAAGCACAA+GGG	0.691717	4_2:-75431608	Msa0622710:CDS
AGAGGATGGAAGTAGCCATA+TGG	0.562281	4_2:-75431568	Msa0622710:CDS
AGCTGAGGAAAATTTGTTTA+TGG	0.235026	4_2:+75431973	None:intergenic
AGGAAAAGAGAAACCAATGG+TGG	0.644162	4_2:+75431722	None:intergenic
AGTAGGAAAAGAGAAACCAA+TGG	0.647659	4_2:+75431719	None:intergenic
ATCAGTAACATCGATCGACG+AGG	0.719628	4_2:-75431667	Msa0622710:CDS
ATGGCCATGGTAGTGATTAG+GGG	0.679512	4_2:+75431931	None:intergenic
ATGTTATTCTATGATGGCCA+TGG	0.591384	4_2:+75431918	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAGATGAACTAAAGAAACT+TGG	-	chr4_2:75431742-75431761	Msa0622710:CDS	30.0%
TTAAGGTTGTGGATAAAGTA+GGG	-	chr4_2:75431962-75431981	Msa0622710:CDS	30.0%
TAAAATACACGTCATACAGA+AGG	+	chr4_2:75432026-75432045	None:intergenic	30.0%
TGACAATTGCTAGAAGAGAA+GGG	+	chr4_2:75431349-75431368	None:intergenic	35.0%
ATGTTATTCTATGATGGCCA+TGG	+	chr4_2:75431448-75431467	None:intergenic	35.0%
ATTTGGAGGAAAAATCCTAG+AGG	+	chr4_2:75431572-75431591	None:intergenic	35.0%
AGTAGGAAAAGAGAAACCAA+TGG	+	chr4_2:75431647-75431666	None:intergenic	35.0%
TAATGGCTATGCTGTTGTTA+AGG	-	chr4_2:75431945-75431964	Msa0622710:CDS	35.0%
GTTAAGGTTGTGGATAAAGT+AGG	-	chr4_2:75431961-75431980	Msa0622710:CDS	35.0%
CTGACAATTGCTAGAAGAGA+AGG	+	chr4_2:75431350-75431369	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	75431335	75432050	75431335	ID=Msa0622710;Name=Msa0622710
chr4_2	mRNA	75431335	75432050	75431335	ID=Msa0622710-mRNA-1;Parent=Msa0622710;Name=Msa0622710-mRNA-1;_AED=0.31;_eAED=0.32;_QI=0\|0\|0\|1\|0\|0\|2\|0\|225
chr4_2	exon	75431882	75432050	75431882	ID=Msa0622710-mRNA-1:exon:22908;Parent=Msa0622710-mRNA-1
chr4_2	exon	75431335	75431843	75431335	ID=Msa0622710-mRNA-1:exon:22907;Parent=Msa0622710-mRNA-1
chr4_2	CDS	75431882	75432050	75431882	ID=Msa0622710-mRNA-1:cds;Parent=Msa0622710-mRNA-1
chr4_2	CDS	75431335	75431843	75431335	ID=Msa0622710-mRNA-1:cds;Parent=Msa0622710-mRNA-1

Gene Sequence

>Msa0622710

ATGGCCAATCTCCCTTCTCTTCTAGCAATTGTCAGGTTACTTTTGCTAATGACTACCATAAACAAATTTTCCTCAGCTAGAACTCTTGGTAATCCAACCCCTAATCACTACCATGGCCATCATAGAATAACATTTTTAATGAAGCATATGCTCAATGATACACATCCTAGTCACAAATCAATTACCTTTTCCAAAACCTCTAGGATTTTTCCTCCAAATGGAGGGATTCCAATTCCACAATCAACTCAAACACAAACACTTGATCTTTCCACCATTGGTTTCTCTTTTCCTACTAGAGCAGCATTTCAAGAGCTGGAATTTGGATCAGTAACATCGATCGACGAGGAACTACTAGTTGAAGGTGATCATGAAGATGAACTAAAGAAACTTGGAAAAGCACAAGGGGTGTATGTAGCTAGTGAAGAGGATGGAAGTAGCCATATGGTTGCTATGACAGTGAGTATTTTGAAGGGTGGGTATGAAGACGGGTTGAGACTTTTTGGAGTTCATAGGAGTGATGTTTTTGAGTCACATGTTGCAGTTATTGGTGGTACTGGAAAGTACCATGGTGCTAATGGCTATGCTGTTGTTAAGGTTGTGGATAAAGTAGGGTCTAGTACAGTAGAAGGAAAAGTTACAAGTTCTAAGTTCCTTCTGTATGACGTGTATTTTAGTTAG

Protein sequence

>Msa0622710

MANLPSLLAIVRLLLLMTTINKFSSARTLGNPTPNHYHGHHRITFLMKHMLNDTHPSHKSITFSKTSRIFPPNGGIPIPQSTQTQTLDLSTIGFSFPTRAAFQELEFGSVTSIDEELLVEGDHEDELKKLGKAQGVYVASEEDGSSHMVAMTVSILKGGYEDGLRLFGVHRSDVFESHVAVIGGTGKYHGANGYAVVKVVDKVGSSTVEGKVTSSKFLLYDVYFS*