Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045680 | sp|Q9LQQ0|DIR25_ARATH | 35.500 | 200 | 98 | 6 | 41 | 211 | 160 | 357 | 1.42e-24 | 103 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045680 | A0A072VS47 | 95.378 | 238 | 9 | 1 | 1 | 238 | 1 | 236 | 2.44e-162 | 457 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000370 | Msa0045680 | 0.809573 | 1.769762e-50 | -8.615850e-47 |
| Msa0013270 | Msa0045680 | 0.815063 | 1.119900e-51 | -8.615850e-47 |
| Msa0045680 | Msa0062190 | 0.801858 | 7.382555e-49 | -8.615850e-47 |
| Msa0045680 | Msa0106540 | 0.813425 | 2.576849e-51 | -8.615850e-47 |
| Msa0045680 | Msa0141410 | 0.802844 | 4.625413e-49 | -8.615850e-47 |
| Msa0045680 | Msa0150000 | 0.812096 | 5.035293e-51 | -8.615850e-47 |
| Msa0045680 | Msa0206370 | 0.833390 | 5.481472e-56 | -8.615850e-47 |
| Msa0045680 | Msa0230920 | 0.802419 | 5.661293e-49 | -8.615850e-47 |
| Msa0045680 | Msa0282830 | 0.800032 | 1.743347e-48 | -8.615850e-47 |
| Msa0045680 | Msa0336430 | 0.801549 | 8.542858e-49 | -8.615850e-47 |
| Msa0045680 | Msa0336460 | 0.814020 | 1.905534e-51 | -8.615850e-47 |
| Msa0045680 | Msa0340270 | 0.801125 | 1.043673e-48 | -8.615850e-47 |
| Msa0045680 | Msa0357470 | 0.805134 | 1.545984e-49 | -8.615850e-47 |
| Msa0045680 | Msa0357510 | 0.810971 | 8.840834e-51 | -8.615850e-47 |
| Msa0045680 | Msa0357530 | 0.802833 | 4.650529e-49 | -8.615850e-47 |
| Msa0045680 | Msa0357560 | 0.806744 | 7.090459e-50 | -8.615850e-47 |
| Msa0045680 | Msa0371350 | -0.806720 | 7.170977e-50 | -8.615850e-47 |
| Msa0045680 | Msa0386910 | 0.819689 | 1.017991e-52 | -8.615850e-47 |
| Msa0045680 | Msa0401500 | 0.813920 | 2.004696e-51 | -8.615850e-47 |
| Msa0045680 | Msa0459930 | 0.803733 | 3.028040e-49 | -8.615850e-47 |
| Msa0045680 | Msa0481670 | 0.807676 | 4.498844e-50 | -8.615850e-47 |
| Msa0045680 | Msa0523720 | 0.806624 | 7.513555e-50 | -8.615850e-47 |
| Msa0045680 | Msa0567330 | 0.816307 | 5.916136e-52 | -8.615850e-47 |
| Msa0045680 | Msa0567570 | 0.820476 | 6.721296e-53 | -8.615850e-47 |
| Msa0045680 | Msa0576320 | 0.801042 | 1.085062e-48 | -8.615850e-47 |
| Msa0045680 | Msa0606600 | 0.809820 | 1.566482e-50 | -8.615850e-47 |
| Msa0045680 | Msa0615070 | 0.804435 | 2.163478e-49 | -8.615850e-47 |
| Msa0045680 | Msa0622710 | 0.873843 | 1.073658e-67 | -8.615850e-47 |
| Msa0045680 | Msa0623250 | 0.919806 | 2.839244e-87 | -8.615850e-47 |
| Msa0045680 | Msa0647300 | 0.824214 | 9.111356e-54 | -8.615850e-47 |
| Msa0045680 | Msa0682110 | 0.809348 | 1.978400e-50 | -8.615850e-47 |
| Msa0045680 | Msa0682160 | 0.802087 | 6.624096e-49 | -8.615850e-47 |
| Msa0045680 | Msa0685390 | -0.814253 | 1.692605e-51 | -8.615850e-47 |
| Msa0045680 | Msa0686830 | 0.828696 | 7.786788e-55 | -8.615850e-47 |
| Msa0045680 | Msa0716980 | 0.810254 | 1.263184e-50 | -8.615850e-47 |
| Msa0045680 | Msa0812720 | 0.804923 | 1.711269e-49 | -8.615850e-47 |
| Msa0045680 | Msa0880910 | 0.809129 | 2.203707e-50 | -8.615850e-47 |
| Msa0045680 | Msa0951200 | 0.810707 | 1.008440e-50 | -8.615850e-47 |
| Msa0045680 | Msa0967780 | 0.802858 | 4.595508e-49 | -8.615850e-47 |
| Msa0045680 | Msa0970270 | 0.804238 | 2.377240e-49 | -8.615850e-47 |
| Msa0045680 | Msa1015560 | 0.800909 | 1.155278e-48 | -8.615850e-47 |
| Msa0045680 | Msa1029820 | 0.803849 | 2.864768e-49 | -8.615850e-47 |
| Msa0045680 | Msa1042300 | 0.811285 | 7.558527e-51 | -8.615850e-47 |
| Msa0045680 | Msa1068940 | 0.809896 | 1.508740e-50 | -8.615850e-47 |
| Msa0045680 | Msa1078590 | -0.807041 | 6.134321e-50 | -8.615850e-47 |
| Msa0045680 | Msa1078760 | -0.810575 | 1.076635e-50 | -8.615850e-47 |
| Msa0045680 | Msa1160540 | 0.807868 | 4.096618e-50 | -8.615850e-47 |
| Msa0045680 | Msa1165460 | 0.820593 | 6.321147e-53 | -8.615850e-47 |
| Msa0045680 | Msa1169590 | -0.802955 | 4.388961e-49 | -8.615850e-47 |
| Msa0045680 | Msa1192360 | 0.801128 | 1.042280e-48 | -8.615850e-47 |
| Msa0045680 | Msa1206920 | 0.819960 | 8.824963e-53 | -8.615850e-47 |
| Msa0045680 | Msa1240490 | 0.818304 | 2.101856e-52 | -8.615850e-47 |
| Msa0045680 | Msa1250660 | 0.808730 | 2.682660e-50 | -8.615850e-47 |
| Msa0045680 | Msa1257200 | 0.816622 | 5.028359e-52 | -8.615850e-47 |
| Msa0045680 | Msa1265570 | 0.800759 | 1.239411e-48 | -8.615850e-47 |
| Msa0045680 | Msa1273320 | 0.801221 | 9.973279e-49 | -8.615850e-47 |
| Msa0045680 | Msa1281780 | 0.835959 | 1.238124e-56 | -8.615850e-47 |
| Msa0045680 | Msa1283980 | 0.803786 | 2.951932e-49 | -8.615850e-47 |
| Msa0045680 | Msa1288070 | 0.800870 | 1.176607e-48 | -8.615850e-47 |
| Msa0045680 | Msa1321010 | 0.843110 | 1.714063e-58 | -8.615850e-47 |
| Msa0045680 | Msa1361980 | 0.802961 | 4.376489e-49 | -8.615850e-47 |
| Msa0045680 | Msa1368420 | 0.817541 | 3.126459e-52 | -8.615850e-47 |
| Msa0045680 | Msa1377200 | 0.811699 | 6.145083e-51 | -8.615850e-47 |
| Msa0045680 | Msa1383220 | 0.820963 | 5.194696e-53 | -8.615850e-47 |
| Msa0045680 | Msa1405830 | 0.813635 | 2.317059e-51 | -8.615850e-47 |
| Msa0045680 | Msa1407810 | 0.819740 | 9.912126e-53 | -8.615850e-47 |
| Msa0045680 | Msa1433360 | 0.820098 | 8.205621e-53 | -8.615850e-47 |
| Msa0045680 | Msa1437780 | 0.819397 | 1.186600e-52 | -8.615850e-47 |
| Msa0045680 | Msa1438510 | 0.817057 | 4.016535e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045680 | MtrunA17_Chr1g0212871 | 95.378 | 238 | 9 | 1 | 1 | 238 | 9 | 244 | 4.77e-166 | 458 |
| Msa0045680 | MtrunA17_Chr1g0212861 | 36.441 | 236 | 104 | 10 | 43 | 238 | 123 | 352 | 1.74e-24 | 99.8 |
| Msa0045680 | MtrunA17_Chr4g0030681 | 48.571 | 105 | 47 | 4 | 110 | 211 | 178 | 278 | 1.47e-22 | 93.6 |
| Msa0045680 | MtrunA17_Chr4g0030731 | 48.571 | 105 | 47 | 4 | 110 | 211 | 177 | 277 | 2.07e-22 | 93.2 |
| Msa0045680 | MtrunA17_Chr7g0221601 | 43.443 | 122 | 63 | 2 | 116 | 233 | 267 | 386 | 5.73e-22 | 93.2 |
| Msa0045680 | MtrunA17_Chr1g0169511 | 32.057 | 209 | 110 | 5 | 43 | 226 | 39 | 240 | 2.27e-21 | 89.4 |
| Msa0045680 | MtrunA17_Chr1g0169291 | 32.536 | 209 | 109 | 6 | 43 | 226 | 39 | 240 | 2.39e-20 | 86.7 |
| Msa0045680 | MtrunA17_Chr4g0030671 | 32.000 | 200 | 106 | 6 | 43 | 214 | 61 | 258 | 5.88e-18 | 80.9 |
| Msa0045680 | MtrunA17_Chr1g0169281 | 27.490 | 251 | 147 | 5 | 4 | 226 | 3 | 246 | 6.36e-17 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045680 | AT1G07730.2 | 35.500 | 200 | 98 | 6 | 41 | 211 | 160 | 357 | 1.44e-25 | 103 |
| Msa0045680 | AT2G28670.2 | 51.887 | 106 | 49 | 2 | 106 | 211 | 91 | 194 | 7.72e-25 | 98.6 |
| Msa0045680 | AT2G28670.1 | 35.644 | 202 | 97 | 5 | 41 | 211 | 205 | 404 | 9.94e-25 | 101 |
| Msa0045680 | AT4G13580.1 | 33.871 | 186 | 98 | 4 | 62 | 224 | 49 | 232 | 8.07e-23 | 93.6 |
| Msa0045680 | AT3G24020.1 | 32.864 | 213 | 113 | 6 | 47 | 236 | 38 | 243 | 1.92e-22 | 92.4 |
| Msa0045680 | AT2G39430.1 | 31.933 | 238 | 114 | 9 | 43 | 236 | 87 | 320 | 9.68e-22 | 92.0 |
| Msa0045680 | AT3G55230.1 | 30.252 | 238 | 120 | 8 | 43 | 237 | 70 | 304 | 2.43e-20 | 88.2 |
Find 51 sgRNAs with CRISPR-Local
Find 66 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTTCAAGAGCTGGAATT+TGG | 0.209367 | 1_1:-77629548 | Msa0045680:CDS |
| GGTTTCTCTGTATTAATATT+AGG | 0.221299 | 1_1:+77629716 | None:intergenic |
| AGCTGAGGAAAATTTGTTTA+TGG | 0.235026 | 1_1:+77629832 | None:intergenic |
| GATGGCCATGGTAGTGATTA+GGG | 0.312185 | 1_1:+77629789 | None:intergenic |
| GTTTGAGTTGATTGTGGAAT+TGG | 0.329326 | 1_1:+77629620 | None:intergenic |
| TGATGGCCATGGTAGTGATT+AGG | 0.343261 | 1_1:+77629788 | None:intergenic |
| GAGTCACATGTTGCAGTTAT+TGG | 0.351309 | 1_1:-77629323 | Msa0045680:CDS |
| CTTCTCTTCTAGCAATTGTC+AGG | 0.383847 | 1_1:-77629874 | Msa0045680:CDS |
| GGAATTGGAATCCCTCCATT+TGG | 0.399195 | 1_1:+77629635 | None:intergenic |
| GTTAAGGTTGTGGATAAAGT+AGG | 0.408640 | 1_1:-77629260 | Msa0045680:CDS |
| GTAGGGTCTAGTACAGTAGA+AGG | 0.416844 | 1_1:-77629242 | Msa0045680:CDS |
| GGAAAGTACCATGGTGCTAA+TGG | 0.420735 | 1_1:-77629293 | Msa0045680:CDS |
| TCTTGAAATGCTGCTCTAGT+AGG | 0.424130 | 1_1:+77629560 | None:intergenic |
| TGAAGGGTGGGTATGAAGAC+GGG | 0.437856 | 1_1:-77629382 | Msa0045680:CDS |
| TAATGGCTATGCTGTTGTTA+AGG | 0.440993 | 1_1:-77629276 | Msa0045680:CDS |
| ACACTTGATCTTTCCACCAT+TGG | 0.449523 | 1_1:-77629593 | Msa0045680:CDS |
| GTTGCAGTTATTGGTGGTAC+TGG | 0.455685 | 1_1:-77629314 | Msa0045680:CDS |
| TTGAAGGGTGGGTATGAAGA+CGG | 0.463306 | 1_1:-77629383 | Msa0045680:CDS |
| TGCTAGAAGAGAAGGGAGAT+TGG | 0.464219 | 1_1:+77629883 | None:intergenic |
| CTATGCTGTTGTTAAGGTTG+TGG | 0.492544 | 1_1:-77629270 | Msa0045680:CDS |
| AGAGAAACCTTCCACTACTA+AGG | 0.495734 | 1_1:-77629702 | Msa0045680:CDS |
| CTGACAATTGCTAGAAGAGA+AGG | 0.504357 | 1_1:+77629875 | None:intergenic |
| TAGAGCAGCATTTCAAGAGC+TGG | 0.504564 | 1_1:-77629555 | Msa0045680:CDS |
| GACGAGGAACTACTAGTTGA+AGG | 0.506266 | 1_1:-77629509 | Msa0045680:CDS |
| TATGTAGCTAGTGAAGAGGA+TGG | 0.509172 | 1_1:-77629440 | Msa0045680:CDS |
| GTTTGTGTTTGAGTTGATTG+TGG | 0.515184 | 1_1:+77629614 | None:intergenic |
| TTAAGGTTGTGGATAAAGTA+GGG | 0.516469 | 1_1:-77629259 | Msa0045680:CDS |
| TCACTGTCATAGCAACCATA+TGG | 0.517871 | 1_1:+77629411 | None:intergenic |
| GAAGATGAACTAAAGAAACT+TGG | 0.528902 | 1_1:-77629479 | Msa0045680:CDS |
| TCTGTATTAATATTAGGACT+AGG | 0.530173 | 1_1:+77629722 | None:intergenic |
| ATTGGAATCCCTCCATTTGG+AGG | 0.538267 | 1_1:+77629638 | None:intergenic |
| CCATGGTAGTGATTAGGGGT+TGG | 0.550854 | 1_1:+77629794 | None:intergenic |
| AGAGGATGGAAGTAGCCATA+TGG | 0.562281 | 1_1:-77629426 | Msa0045680:CDS |
| TTTGTGACCTTAGTAGTGGA+AGG | 0.562764 | 1_1:+77629695 | None:intergenic |
| TTGATTTGTGACCTTAGTAG+TGG | 0.562901 | 1_1:+77629691 | None:intergenic |
| ATGTTATTCTATGATGGCCA+TGG | 0.591384 | 1_1:+77629777 | None:intergenic |
| GGTGTATGTAGCTAGTGAAG+AGG | 0.591556 | 1_1:-77629444 | Msa0045680:CDS |
| TAAAATACACGTCATACAGA+AGG | 0.595028 | 1_1:+77629198 | None:intergenic |
| TCACATGTTGCAGTTATTGG+TGG | 0.626055 | 1_1:-77629320 | Msa0045680:CDS |
| AAGAAACTTGGAAAAGCACA+AGG | 0.629760 | 1_1:-77629467 | Msa0045680:CDS |
| TGACAATTGCTAGAAGAGAA+GGG | 0.634492 | 1_1:+77629876 | None:intergenic |
| AGGAAAAGAGAAACCAATGG+TGG | 0.644162 | 1_1:+77629580 | None:intergenic |
| AGTAGGAAAAGAGAAACCAA+TGG | 0.647659 | 1_1:+77629577 | None:intergenic |
| CCAACCCCTAATCACTACCA+TGG | 0.665385 | 1_1:-77629794 | Msa0045680:CDS |
| GAAACTTGGAAAAGCACAAG+GGG | 0.665476 | 1_1:-77629465 | Msa0045680:CDS |
| CAGCATAGCCATTAGCACCA+TGG | 0.679074 | 1_1:+77629285 | None:intergenic |
| ATGGCCATGGTAGTGATTAG+GGG | 0.679512 | 1_1:+77629790 | None:intergenic |
| AGAAACTTGGAAAAGCACAA+GGG | 0.691717 | 1_1:-77629466 | Msa0045680:CDS |
| ATTACCAAGAGTTCTAGCTG+AGG | 0.711799 | 1_1:+77629817 | None:intergenic |
| ATCAGTAACATCGATCGACG+AGG | 0.719628 | 1_1:-77629525 | Msa0045680:CDS |
| GGTGGTACTGGAAAGTACCA+TGG | 0.742516 | 1_1:-77629302 | Msa0045680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAATGTTATTCTATGA+TGG | + | chr1_1:77629312-77629331 | None:intergenic | 15.0% |
| ! | TCTGTATTAATATTAGGACT+AGG | + | chr1_1:77629361-77629380 | None:intergenic | 25.0% |
| ! | GGTTTCTCTGTATTAATATT+AGG | + | chr1_1:77629367-77629386 | None:intergenic | 25.0% |
| ! | AGCTGAGGAAAATTTGTTTA+TGG | + | chr1_1:77629251-77629270 | None:intergenic | 30.0% |
| GAAGATGAACTAAAGAAACT+TGG | - | chr1_1:77629601-77629620 | Msa0045680:CDS | 30.0% | |
| !! | TATGACAGTGAGTATTTTGA+AGG | - | chr1_1:77629681-77629700 | Msa0045680:CDS | 30.0% |
| !! | ATGACAGTGAGTATTTTGAA+GGG | - | chr1_1:77629682-77629701 | Msa0045680:CDS | 30.0% |
| TTAAGGTTGTGGATAAAGTA+GGG | - | chr1_1:77629821-77629840 | Msa0045680:CDS | 30.0% | |
| TAAAATACACGTCATACAGA+AGG | + | chr1_1:77629885-77629904 | None:intergenic | 30.0% | |
| TGACAATTGCTAGAAGAGAA+GGG | + | chr1_1:77629207-77629226 | None:intergenic | 35.0% | |
| ATGTTATTCTATGATGGCCA+TGG | + | chr1_1:77629306-77629325 | None:intergenic | 35.0% | |
| !! | TTGATTTGTGACCTTAGTAG+TGG | + | chr1_1:77629392-77629411 | None:intergenic | 35.0% |
| ! | TTACCTTTTCCAAAACCTCT+AGG | - | chr1_1:77629412-77629431 | Msa0045680:CDS | 35.0% |
| !!! | AATCCTAGAGGTTTTGGAAA+AGG | + | chr1_1:77629418-77629437 | None:intergenic | 35.0% |
| ! | GGAAAAAATCCTAGAGGTTT+TGG | + | chr1_1:77629424-77629443 | None:intergenic | 35.0% |
| TTTGGAGGAAAAAATCCTAG+AGG | + | chr1_1:77629430-77629449 | None:intergenic | 35.0% | |
| !!! | CTAGGATTTTTTCCTCCAAA+TGG | - | chr1_1:77629430-77629449 | Msa0045680:CDS | 35.0% |
| !!! | GATTTTTTCCTCCAAATGGA+GGG | - | chr1_1:77629434-77629453 | Msa0045680:CDS | 35.0% |
| !! | GTTTGAGTTGATTGTGGAAT+TGG | + | chr1_1:77629463-77629482 | None:intergenic | 35.0% |
| !! | GTTTGTGTTTGAGTTGATTG+TGG | + | chr1_1:77629469-77629488 | None:intergenic | 35.0% |
| AGTAGGAAAAGAGAAACCAA+TGG | + | chr1_1:77629506-77629525 | None:intergenic | 35.0% | |
| ! | AAGAAACTTGGAAAAGCACA+AGG | - | chr1_1:77629613-77629632 | Msa0045680:CDS | 35.0% |
| ! | AGAAACTTGGAAAAGCACAA+GGG | - | chr1_1:77629614-77629633 | Msa0045680:CDS | 35.0% |
| !!! | TGAGACTTTTTGGAGTTCAT+AGG | - | chr1_1:77629722-77629741 | Msa0045680:CDS | 35.0% |
| TAATGGCTATGCTGTTGTTA+AGG | - | chr1_1:77629804-77629823 | Msa0045680:CDS | 35.0% | |
| GTTAAGGTTGTGGATAAAGT+AGG | - | chr1_1:77629820-77629839 | Msa0045680:CDS | 35.0% | |
| CTGACAATTGCTAGAAGAGA+AGG | + | chr1_1:77629208-77629227 | None:intergenic | 40.0% | |
| CTTCTCTTCTAGCAATTGTC+AGG | - | chr1_1:77629206-77629225 | Msa0045680:CDS | 40.0% | |
| ! | TTTTCCTCAGCTAGAACTCT+TGG | - | chr1_1:77629259-77629278 | Msa0045680:CDS | 40.0% |
| ! | ATTACCAAGAGTTCTAGCTG+AGG | + | chr1_1:77629266-77629285 | None:intergenic | 40.0% |
| AGAGAAACCTTCCACTACTA+AGG | - | chr1_1:77629378-77629397 | Msa0045680:CDS | 40.0% | |
| ! | TTTGTGACCTTAGTAGTGGA+AGG | + | chr1_1:77629388-77629407 | None:intergenic | 40.0% |
| !!! | GGATTTTTTCCTCCAAATGG+AGG | - | chr1_1:77629433-77629452 | Msa0045680:CDS | 40.0% |
| ACACTTGATCTTTCCACCAT+TGG | - | chr1_1:77629487-77629506 | Msa0045680:CDS | 40.0% | |
| AGGAAAAGAGAAACCAATGG+TGG | + | chr1_1:77629503-77629522 | None:intergenic | 40.0% | |
| TCTTGAAATGCTGCTCTAGT+AGG | + | chr1_1:77629523-77629542 | None:intergenic | 40.0% | |
| GCATTTCAAGAGCTGGAATT+TGG | - | chr1_1:77629532-77629551 | Msa0045680:CDS | 40.0% | |
| ! | GAAACTTGGAAAAGCACAAG+GGG | - | chr1_1:77629615-77629634 | Msa0045680:CDS | 40.0% |
| TATGTAGCTAGTGAAGAGGA+TGG | - | chr1_1:77629640-77629659 | Msa0045680:CDS | 40.0% | |
| TCACTGTCATAGCAACCATA+TGG | + | chr1_1:77629672-77629691 | None:intergenic | 40.0% | |
| !! | ACAGTGAGTATTTTGAAGGG+TGG | - | chr1_1:77629685-77629704 | Msa0045680:CDS | 40.0% |
| !! | CAGTGAGTATTTTGAAGGGT+GGG | - | chr1_1:77629686-77629705 | Msa0045680:CDS | 40.0% |
| GAGTCACATGTTGCAGTTAT+TGG | - | chr1_1:77629757-77629776 | Msa0045680:CDS | 40.0% | |
| TCACATGTTGCAGTTATTGG+TGG | - | chr1_1:77629760-77629779 | Msa0045680:CDS | 40.0% | |
| CTATGCTGTTGTTAAGGTTG+TGG | - | chr1_1:77629810-77629829 | Msa0045680:CDS | 40.0% | |
| TGCTAGAAGAGAAGGGAGAT+TGG | + | chr1_1:77629200-77629219 | None:intergenic | 45.0% | |
| ! | ATGGCCATGGTAGTGATTAG+GGG | + | chr1_1:77629293-77629312 | None:intergenic | 45.0% |
| ! | GATGGCCATGGTAGTGATTA+GGG | + | chr1_1:77629294-77629313 | None:intergenic | 45.0% |
| ! | TGATGGCCATGGTAGTGATT+AGG | + | chr1_1:77629295-77629314 | None:intergenic | 45.0% |
| ATTGGAATCCCTCCATTTGG+AGG | + | chr1_1:77629445-77629464 | None:intergenic | 45.0% | |
| GGAATTGGAATCCCTCCATT+TGG | + | chr1_1:77629448-77629467 | None:intergenic | 45.0% | |
| TAGAGCAGCATTTCAAGAGC+TGG | - | chr1_1:77629525-77629544 | Msa0045680:CDS | 45.0% | |
| ATCAGTAACATCGATCGACG+AGG | - | chr1_1:77629555-77629574 | Msa0045680:CDS | 45.0% | |
| GACGAGGAACTACTAGTTGA+AGG | - | chr1_1:77629571-77629590 | Msa0045680:CDS | 45.0% | |
| GGTGTATGTAGCTAGTGAAG+AGG | - | chr1_1:77629636-77629655 | Msa0045680:CDS | 45.0% | |
| AGAGGATGGAAGTAGCCATA+TGG | - | chr1_1:77629654-77629673 | Msa0045680:CDS | 45.0% | |
| TTGAAGGGTGGGTATGAAGA+CGG | - | chr1_1:77629697-77629716 | Msa0045680:CDS | 45.0% | |
| !!! | GAAGACGGGTTGAGACTTTT+TGG | - | chr1_1:77629712-77629731 | Msa0045680:CDS | 45.0% |
| ! | GTTGCAGTTATTGGTGGTAC+TGG | - | chr1_1:77629766-77629785 | Msa0045680:CDS | 45.0% |
| !! | GGAAAGTACCATGGTGCTAA+TGG | - | chr1_1:77629787-77629806 | Msa0045680:CDS | 45.0% |
| GTAGGGTCTAGTACAGTAGA+AGG | - | chr1_1:77629838-77629857 | Msa0045680:CDS | 45.0% | |
| ! | CCATGGTAGTGATTAGGGGT+TGG | + | chr1_1:77629289-77629308 | None:intergenic | 50.0% |
| CCAACCCCTAATCACTACCA+TGG | - | chr1_1:77629286-77629305 | Msa0045680:CDS | 50.0% | |
| TGAAGGGTGGGTATGAAGAC+GGG | - | chr1_1:77629698-77629717 | Msa0045680:CDS | 50.0% | |
| !! | GGTGGTACTGGAAAGTACCA+TGG | - | chr1_1:77629778-77629797 | Msa0045680:CDS | 50.0% |
| CAGCATAGCCATTAGCACCA+TGG | + | chr1_1:77629798-77629817 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 77629193 | 77629909 | 77629193 | ID=Msa0045680;Name=Msa0045680 |
| chr1_1 | mRNA | 77629193 | 77629909 | 77629193 | ID=Msa0045680-mRNA-1;Parent=Msa0045680;Name=Msa0045680-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|-1|0|1|-1|1|1|0|238 |
| chr1_1 | exon | 77629193 | 77629909 | 77629193 | ID=Msa0045680-mRNA-1:exon:26596;Parent=Msa0045680-mRNA-1 |
| chr1_1 | CDS | 77629193 | 77629909 | 77629193 | ID=Msa0045680-mRNA-1:cds;Parent=Msa0045680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
