Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0623250 | RHN82725.1 | 95.798 | 238 | 8 | 1 | 1 | 238 | 9 | 244 | 6.74e-163 | 460 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0623250 | sp|Q9LQQ0|DIR25_ARATH | 36.000 | 200 | 97 | 6 | 41 | 211 | 160 | 357 | 1.49e-25 | 106 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0000370 | Msa0623250 | 0.821235 | 4.496334e-53 | -8.615850e-47 |
Msa0013270 | Msa0623250 | 0.800541 | 1.373128e-48 | -8.615850e-47 |
Msa0045680 | Msa0623250 | 0.919806 | 2.839244e-87 | -8.615850e-47 |
Msa0106540 | Msa0623250 | 0.800329 | 1.517133e-48 | -8.615850e-47 |
Msa0116180 | Msa0623250 | 0.839436 | 1.586821e-57 | -8.615850e-47 |
Msa0622710 | Msa0623250 | 0.813324 | 2.710913e-51 | -8.615850e-47 |
Msa0623250 | Msa0804170 | 0.814336 | 1.622534e-51 | -8.615850e-47 |
Msa0623250 | Msa0852890 | 0.802353 | 5.839649e-49 | -8.615850e-47 |
Msa0623250 | Msa0880910 | 0.809309 | 2.016316e-50 | -8.615850e-47 |
Msa0623250 | Msa0913550 | 0.802956 | 4.386791e-49 | -8.615850e-47 |
Msa0623250 | Msa0946310 | 0.809908 | 1.499610e-50 | -8.615850e-47 |
Msa0623250 | Msa0970270 | 0.801914 | 7.191899e-49 | -8.615850e-47 |
Msa0623250 | Msa0987640 | 0.814909 | 1.211943e-51 | -8.615850e-47 |
Msa0623250 | Msa0989480 | 0.820018 | 8.562639e-53 | -8.615850e-47 |
Msa0623250 | Msa1015560 | 0.830898 | 2.266335e-55 | -8.615850e-47 |
Msa0623250 | Msa1078590 | -0.805133 | 1.546704e-49 | -8.615850e-47 |
Msa0623250 | Msa1078760 | -0.804466 | 2.131408e-49 | -8.615850e-47 |
Msa0623250 | Msa1079820 | 0.804062 | 2.587326e-49 | -8.615850e-47 |
Msa0623250 | Msa1146980 | 0.800227 | 1.591196e-48 | -8.615850e-47 |
Msa0623250 | Msa1165460 | 0.823862 | 1.102112e-53 | -8.615850e-47 |
Msa0623250 | Msa1169590 | -0.801799 | 7.592409e-49 | -8.615850e-47 |
Msa0623250 | Msa1206920 | 0.821470 | 3.969256e-53 | -8.615850e-47 |
Msa0623250 | Msa1233640 | 0.800558 | 1.362349e-48 | -8.615850e-47 |
Msa0623250 | Msa1240490 | 0.805641 | 1.210132e-49 | -8.615850e-47 |
Msa0623250 | Msa1257200 | 0.821111 | 4.802358e-53 | -8.615850e-47 |
Msa0623250 | Msa1281780 | 0.812426 | 4.266182e-51 | -8.615850e-47 |
Msa0623250 | Msa1321010 | 0.811792 | 5.863001e-51 | -8.615850e-47 |
Msa0623250 | Msa1323080 | 0.801781 | 7.658894e-49 | -8.615850e-47 |
Msa0623250 | Msa1323120 | 0.805393 | 1.364475e-49 | -8.615850e-47 |
Msa0623250 | Msa1407670 | 0.804884 | 1.743779e-49 | -8.615850e-47 |
Msa0623250 | Msa1413020 | 0.815446 | 9.205991e-52 | -8.615850e-47 |
Msa0623250 | Msa1449770 | 0.812632 | 3.844697e-51 | -8.615850e-47 |
Msa0163340 | Msa0623250 | 0.803553 | 3.300147e-49 | -8.615850e-47 |
Msa0349930 | Msa0623250 | 0.807384 | 5.189775e-50 | -8.615850e-47 |
Msa0523720 | Msa0623250 | 0.800863 | 1.180516e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0623250 | MtrunA17_Chr1g0212871 | 95.798 | 238 | 8 | 1 | 1 | 238 | 9 | 244 | 6.20e-167 | 460 |
Msa0623250 | MtrunA17_Chr1g0212861 | 37.131 | 237 | 101 | 11 | 43 | 238 | 123 | 352 | 8.10e-25 | 100 |
Msa0623250 | MtrunA17_Chr4g0030681 | 49.524 | 105 | 46 | 4 | 110 | 211 | 178 | 278 | 2.05e-23 | 95.9 |
Msa0623250 | MtrunA17_Chr4g0030731 | 49.524 | 105 | 46 | 4 | 110 | 211 | 177 | 277 | 3.30e-23 | 95.5 |
Msa0623250 | MtrunA17_Chr1g0169511 | 32.536 | 209 | 109 | 5 | 43 | 226 | 39 | 240 | 2.50e-22 | 92.0 |
Msa0623250 | MtrunA17_Chr7g0221601 | 43.902 | 123 | 61 | 3 | 116 | 233 | 267 | 386 | 8.45e-22 | 92.8 |
Msa0623250 | MtrunA17_Chr1g0169291 | 33.014 | 209 | 108 | 6 | 43 | 226 | 39 | 240 | 2.55e-21 | 89.4 |
Msa0623250 | MtrunA17_Chr4g0030671 | 32.500 | 200 | 105 | 6 | 43 | 214 | 61 | 258 | 6.16e-19 | 83.6 |
Msa0623250 | MtrunA17_Chr1g0169281 | 27.888 | 251 | 146 | 5 | 4 | 226 | 3 | 246 | 5.86e-18 | 80.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0623250 | AT1G07730.2 | 36.000 | 200 | 97 | 6 | 41 | 211 | 160 | 357 | 1.52e-26 | 106 |
Msa0623250 | AT2G28670.2 | 52.830 | 106 | 48 | 2 | 106 | 211 | 91 | 194 | 9.12e-26 | 100 |
Msa0623250 | AT2G28670.1 | 36.139 | 202 | 96 | 5 | 41 | 211 | 205 | 404 | 1.30e-25 | 103 |
Msa0623250 | AT4G13580.1 | 33.871 | 186 | 98 | 4 | 62 | 224 | 49 | 232 | 1.26e-22 | 92.8 |
Msa0623250 | AT3G24020.1 | 32.864 | 213 | 113 | 6 | 47 | 236 | 38 | 243 | 2.59e-22 | 92.0 |
Msa0623250 | AT2G39430.1 | 31.933 | 238 | 114 | 9 | 43 | 236 | 87 | 320 | 1.30e-21 | 91.7 |
Msa0623250 | AT3G55230.1 | 30.252 | 238 | 120 | 8 | 43 | 237 | 70 | 304 | 2.61e-20 | 87.8 |
Find 51 sgRNAs with CRISPR-Local
Find 66 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCATTTCAAGAGCTGGAATT+TGG | 0.209367 | 4_3:+439411 | Msa0623250:CDS |
GGTTTCTCTGTATTAATATT+AGG | 0.221299 | 4_3:-439243 | None:intergenic |
AGCTGAGGAAAATTTGTTTA+TGG | 0.235026 | 4_3:-439127 | None:intergenic |
GATGGCCATGGTAGTGATTA+GGG | 0.312185 | 4_3:-439170 | None:intergenic |
GTTTGAGTTGATTGTGGAAT+TGG | 0.329326 | 4_3:-439339 | None:intergenic |
TGATGGCCATGGTAGTGATT+AGG | 0.343261 | 4_3:-439171 | None:intergenic |
GAGTCACATGTTGCAGTTAT+TGG | 0.351309 | 4_3:+439636 | Msa0623250:CDS |
CTTCTCTTCTAGCAATTGTC+AGG | 0.383847 | 4_3:+439085 | Msa0623250:CDS |
GGAATTGGAATCCCTCCATT+TGG | 0.399195 | 4_3:-439324 | None:intergenic |
GTTAAGGTTGTGGATAAAGT+AGG | 0.408640 | 4_3:+439699 | Msa0623250:CDS |
GTAGGGTCTAGTACAGTAGA+AGG | 0.416844 | 4_3:+439717 | Msa0623250:CDS |
GGAAAGTACCATGGTGCTAA+TGG | 0.420735 | 4_3:+439666 | Msa0623250:CDS |
TCTTGAAATGCTGCTCTAGT+AGG | 0.424130 | 4_3:-439399 | None:intergenic |
TGAAGGGTGGGTATGAAGAC+GGG | 0.435836 | 4_3:+439577 | Msa0623250:CDS |
TAATGGCTATGCTGTTGTTA+AGG | 0.440993 | 4_3:+439683 | Msa0623250:CDS |
ACACTTGATCTTTCCACCAT+TGG | 0.449523 | 4_3:+439366 | Msa0623250:CDS |
GTTGCAGTTATTGGTGGTAC+TGG | 0.455685 | 4_3:+439645 | Msa0623250:CDS |
TTGAAGGGTGGGTATGAAGA+CGG | 0.461286 | 4_3:+439576 | Msa0623250:CDS |
TGCTAGAAGAGAAGGGAGAT+TGG | 0.464219 | 4_3:-439076 | None:intergenic |
CTATGCTGTTGTTAAGGTTG+TGG | 0.492544 | 4_3:+439689 | Msa0623250:CDS |
AGAGAAACCTTCCACTACTA+AGG | 0.495734 | 4_3:+439257 | Msa0623250:CDS |
CTGACAATTGCTAGAAGAGA+AGG | 0.504357 | 4_3:-439084 | None:intergenic |
TAGAGCAGCATTTCAAGAGC+TGG | 0.504564 | 4_3:+439404 | Msa0623250:CDS |
GACGAGGAACTACTAGTTGA+AGG | 0.506266 | 4_3:+439450 | Msa0623250:CDS |
TATGTAGCTAGTGAAGAGGA+TGG | 0.509172 | 4_3:+439519 | Msa0623250:CDS |
GTTTGTGTTTGAGTTGATTG+TGG | 0.515184 | 4_3:-439345 | None:intergenic |
TTAAGGTTGTGGATAAAGTA+GGG | 0.516469 | 4_3:+439700 | Msa0623250:CDS |
TCACTGTCATAGCAACCATA+TGG | 0.517871 | 4_3:-439548 | None:intergenic |
GAAGATGAACTAAAGAAACT+TGG | 0.528902 | 4_3:+439480 | Msa0623250:CDS |
TCTGTATTAATATTAGGACT+AGG | 0.530173 | 4_3:-439237 | None:intergenic |
ATTGGAATCCCTCCATTTGG+AGG | 0.538267 | 4_3:-439321 | None:intergenic |
CCATGGTAGTGATTAGGGGT+TGG | 0.550854 | 4_3:-439165 | None:intergenic |
AGAGGATGGAAGTAGCCATA+TGG | 0.562281 | 4_3:+439533 | Msa0623250:CDS |
TTTGTGACCTTAGTAGTGGA+AGG | 0.562764 | 4_3:-439264 | None:intergenic |
TTGATTTGTGACCTTAGTAG+TGG | 0.562901 | 4_3:-439268 | None:intergenic |
ATGTTATTCTATGATGGCCA+TGG | 0.591384 | 4_3:-439182 | None:intergenic |
GGTGTATGTAGCTAGTGAAG+AGG | 0.591556 | 4_3:+439515 | Msa0623250:CDS |
TAAAATACACGTCATACAGA+AGG | 0.595028 | 4_3:-439761 | None:intergenic |
TCACATGTTGCAGTTATTGG+TGG | 0.626055 | 4_3:+439639 | Msa0623250:CDS |
AAGAAACTTGGAAAAGCACA+AGG | 0.629760 | 4_3:+439492 | Msa0623250:CDS |
TGACAATTGCTAGAAGAGAA+GGG | 0.634492 | 4_3:-439083 | None:intergenic |
AGGAAAAGAGAAACCAATGG+TGG | 0.644162 | 4_3:-439379 | None:intergenic |
AGTAGGAAAAGAGAAACCAA+TGG | 0.647659 | 4_3:-439382 | None:intergenic |
CCAACCCCTAATCACTACCA+TGG | 0.665385 | 4_3:+439165 | Msa0623250:CDS |
GAAACTTGGAAAAGCACAAG+GGG | 0.665476 | 4_3:+439494 | Msa0623250:CDS |
CAGCATAGCCATTAGCACCA+TGG | 0.679074 | 4_3:-439674 | None:intergenic |
ATGGCCATGGTAGTGATTAG+GGG | 0.679512 | 4_3:-439169 | None:intergenic |
AGAAACTTGGAAAAGCACAA+GGG | 0.691717 | 4_3:+439493 | Msa0623250:CDS |
ATTACCAAGAGTTCTAGCTG+AGG | 0.711799 | 4_3:-439142 | None:intergenic |
ATCAGTAACATCGATCGACG+AGG | 0.719628 | 4_3:+439434 | Msa0623250:CDS |
GGTGGTACTGGAAAGTACCA+TGG | 0.742516 | 4_3:+439657 | Msa0623250:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAAAAATGTTATTCTATGA+TGG | - | chr4_3:439191-439210 | None:intergenic | 15.0% |
! | TCTGTATTAATATTAGGACT+AGG | - | chr4_3:439240-439259 | None:intergenic | 25.0% |
! | GGTTTCTCTGTATTAATATT+AGG | - | chr4_3:439246-439265 | None:intergenic | 25.0% |
! | AGCTGAGGAAAATTTGTTTA+TGG | - | chr4_3:439130-439149 | None:intergenic | 30.0% |
GAAGATGAACTAAAGAAACT+TGG | + | chr4_3:439480-439499 | Msa0623250:CDS | 30.0% | |
!!! | TATGACAGTGAGTTTTTTGA+AGG | + | chr4_3:439560-439579 | Msa0623250:CDS | 30.0% |
!!! | ATGACAGTGAGTTTTTTGAA+GGG | + | chr4_3:439561-439580 | Msa0623250:CDS | 30.0% |
TTAAGGTTGTGGATAAAGTA+GGG | + | chr4_3:439700-439719 | Msa0623250:CDS | 30.0% | |
TAAAATACACGTCATACAGA+AGG | - | chr4_3:439764-439783 | None:intergenic | 30.0% | |
TGACAATTGCTAGAAGAGAA+GGG | - | chr4_3:439086-439105 | None:intergenic | 35.0% | |
ATGTTATTCTATGATGGCCA+TGG | - | chr4_3:439185-439204 | None:intergenic | 35.0% | |
!! | TTGATTTGTGACCTTAGTAG+TGG | - | chr4_3:439271-439290 | None:intergenic | 35.0% |
! | TTACCTTTTCCAAAACCTCT+AGG | + | chr4_3:439291-439310 | Msa0623250:CDS | 35.0% |
!!! | AATCCTAGAGGTTTTGGAAA+AGG | - | chr4_3:439297-439316 | None:intergenic | 35.0% |
! | GGAAAAAATCCTAGAGGTTT+TGG | - | chr4_3:439303-439322 | None:intergenic | 35.0% |
TTTGGAGGAAAAAATCCTAG+AGG | - | chr4_3:439309-439328 | None:intergenic | 35.0% | |
!!! | CTAGGATTTTTTCCTCCAAA+TGG | + | chr4_3:439309-439328 | Msa0623250:CDS | 35.0% |
!!! | GATTTTTTCCTCCAAATGGA+GGG | + | chr4_3:439313-439332 | Msa0623250:CDS | 35.0% |
!! | GTTTGAGTTGATTGTGGAAT+TGG | - | chr4_3:439342-439361 | None:intergenic | 35.0% |
!! | GTTTGTGTTTGAGTTGATTG+TGG | - | chr4_3:439348-439367 | None:intergenic | 35.0% |
AGTAGGAAAAGAGAAACCAA+TGG | - | chr4_3:439385-439404 | None:intergenic | 35.0% | |
! | AAGAAACTTGGAAAAGCACA+AGG | + | chr4_3:439492-439511 | Msa0623250:CDS | 35.0% |
! | AGAAACTTGGAAAAGCACAA+GGG | + | chr4_3:439493-439512 | Msa0623250:CDS | 35.0% |
!!! | TGAGACTTTTTGGAGTTCAT+AGG | + | chr4_3:439601-439620 | Msa0623250:CDS | 35.0% |
TAATGGCTATGCTGTTGTTA+AGG | + | chr4_3:439683-439702 | Msa0623250:CDS | 35.0% | |
GTTAAGGTTGTGGATAAAGT+AGG | + | chr4_3:439699-439718 | Msa0623250:CDS | 35.0% | |
CTGACAATTGCTAGAAGAGA+AGG | - | chr4_3:439087-439106 | None:intergenic | 40.0% | |
CTTCTCTTCTAGCAATTGTC+AGG | + | chr4_3:439085-439104 | Msa0623250:CDS | 40.0% | |
! | TTTTCCTCAGCTAGAACTCT+TGG | + | chr4_3:439138-439157 | Msa0623250:CDS | 40.0% |
! | ATTACCAAGAGTTCTAGCTG+AGG | - | chr4_3:439145-439164 | None:intergenic | 40.0% |
AGAGAAACCTTCCACTACTA+AGG | + | chr4_3:439257-439276 | Msa0623250:CDS | 40.0% | |
! | TTTGTGACCTTAGTAGTGGA+AGG | - | chr4_3:439267-439286 | None:intergenic | 40.0% |
!!! | GGATTTTTTCCTCCAAATGG+AGG | + | chr4_3:439312-439331 | Msa0623250:CDS | 40.0% |
ACACTTGATCTTTCCACCAT+TGG | + | chr4_3:439366-439385 | Msa0623250:CDS | 40.0% | |
AGGAAAAGAGAAACCAATGG+TGG | - | chr4_3:439382-439401 | None:intergenic | 40.0% | |
TCTTGAAATGCTGCTCTAGT+AGG | - | chr4_3:439402-439421 | None:intergenic | 40.0% | |
GCATTTCAAGAGCTGGAATT+TGG | + | chr4_3:439411-439430 | Msa0623250:CDS | 40.0% | |
! | GAAACTTGGAAAAGCACAAG+GGG | + | chr4_3:439494-439513 | Msa0623250:CDS | 40.0% |
TATGTAGCTAGTGAAGAGGA+TGG | + | chr4_3:439519-439538 | Msa0623250:CDS | 40.0% | |
TCACTGTCATAGCAACCATA+TGG | - | chr4_3:439551-439570 | None:intergenic | 40.0% | |
!!! | ACAGTGAGTTTTTTGAAGGG+TGG | + | chr4_3:439564-439583 | Msa0623250:CDS | 40.0% |
!!! | CAGTGAGTTTTTTGAAGGGT+GGG | + | chr4_3:439565-439584 | Msa0623250:CDS | 40.0% |
GAGTCACATGTTGCAGTTAT+TGG | + | chr4_3:439636-439655 | Msa0623250:CDS | 40.0% | |
TCACATGTTGCAGTTATTGG+TGG | + | chr4_3:439639-439658 | Msa0623250:CDS | 40.0% | |
CTATGCTGTTGTTAAGGTTG+TGG | + | chr4_3:439689-439708 | Msa0623250:CDS | 40.0% | |
TGCTAGAAGAGAAGGGAGAT+TGG | - | chr4_3:439079-439098 | None:intergenic | 45.0% | |
! | ATGGCCATGGTAGTGATTAG+GGG | - | chr4_3:439172-439191 | None:intergenic | 45.0% |
! | GATGGCCATGGTAGTGATTA+GGG | - | chr4_3:439173-439192 | None:intergenic | 45.0% |
! | TGATGGCCATGGTAGTGATT+AGG | - | chr4_3:439174-439193 | None:intergenic | 45.0% |
ATTGGAATCCCTCCATTTGG+AGG | - | chr4_3:439324-439343 | None:intergenic | 45.0% | |
GGAATTGGAATCCCTCCATT+TGG | - | chr4_3:439327-439346 | None:intergenic | 45.0% | |
TAGAGCAGCATTTCAAGAGC+TGG | + | chr4_3:439404-439423 | Msa0623250:CDS | 45.0% | |
ATCAGTAACATCGATCGACG+AGG | + | chr4_3:439434-439453 | Msa0623250:CDS | 45.0% | |
GACGAGGAACTACTAGTTGA+AGG | + | chr4_3:439450-439469 | Msa0623250:CDS | 45.0% | |
GGTGTATGTAGCTAGTGAAG+AGG | + | chr4_3:439515-439534 | Msa0623250:CDS | 45.0% | |
AGAGGATGGAAGTAGCCATA+TGG | + | chr4_3:439533-439552 | Msa0623250:CDS | 45.0% | |
TTGAAGGGTGGGTATGAAGA+CGG | + | chr4_3:439576-439595 | Msa0623250:CDS | 45.0% | |
!!! | GAAGACGGGTTGAGACTTTT+TGG | + | chr4_3:439591-439610 | Msa0623250:CDS | 45.0% |
! | GTTGCAGTTATTGGTGGTAC+TGG | + | chr4_3:439645-439664 | Msa0623250:CDS | 45.0% |
!! | GGAAAGTACCATGGTGCTAA+TGG | + | chr4_3:439666-439685 | Msa0623250:CDS | 45.0% |
GTAGGGTCTAGTACAGTAGA+AGG | + | chr4_3:439717-439736 | Msa0623250:CDS | 45.0% | |
! | CCATGGTAGTGATTAGGGGT+TGG | - | chr4_3:439168-439187 | None:intergenic | 50.0% |
CCAACCCCTAATCACTACCA+TGG | + | chr4_3:439165-439184 | Msa0623250:CDS | 50.0% | |
TGAAGGGTGGGTATGAAGAC+GGG | + | chr4_3:439577-439596 | Msa0623250:CDS | 50.0% | |
!! | GGTGGTACTGGAAAGTACCA+TGG | + | chr4_3:439657-439676 | Msa0623250:CDS | 50.0% |
CAGCATAGCCATTAGCACCA+TGG | - | chr4_3:439677-439696 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_3 | gene | 439072 | 439788 | 439072 | ID=Msa0623250;Name=Msa0623250 |
chr4_3 | mRNA | 439072 | 439788 | 439072 | ID=Msa0623250-mRNA-1;Parent=Msa0623250;Name=Msa0623250-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|-1|0|1|-1|1|1|0|238 |
chr4_3 | exon | 439072 | 439788 | 439072 | ID=Msa0623250-mRNA-1:exon:119;Parent=Msa0623250-mRNA-1 |
chr4_3 | CDS | 439072 | 439788 | 439072 | ID=Msa0623250-mRNA-1:cds;Parent=Msa0623250-mRNA-1 |
Gene Sequence |
Protein sequence |