Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0624250 | XP_004511068.1 | 75.789 | 380 | 83 | 2 | 1 | 371 | 1 | 380 | 0.0 | 605 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0624250 | sp|H1A988|C7254_GLYUR | 62.434 | 378 | 131 | 5 | 5 | 371 | 6 | 383 | 1.06e-171 | 491 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0624250 | Msa0624350 | 0.976037 | 4.586516e-141 | -8.615850e-47 |
| Msa0624250 | Msa1190310 | 0.884179 | 2.392508e-71 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0624250 | MtrunA17_Chr8g0354571 | 61.290 | 372 | 130 | 3 | 11 | 371 | 16 | 384 | 2.59e-163 | 467 |
| Msa0624250 | MtrunA17_Chr8g0354511 | 60.215 | 372 | 134 | 3 | 11 | 371 | 16 | 384 | 7.65e-161 | 461 |
| Msa0624250 | MtrunA17_Chr8g0354531 | 61.662 | 373 | 128 | 5 | 10 | 371 | 137 | 505 | 2.25e-160 | 464 |
| Msa0624250 | MtrunA17_Chr2g0313781 | 51.546 | 388 | 168 | 3 | 4 | 371 | 1 | 388 | 6.37e-139 | 405 |
| Msa0624250 | MtrunA17_Chr2g0313821 | 52.128 | 376 | 172 | 2 | 4 | 371 | 1 | 376 | 3.15e-138 | 403 |
| Msa0624250 | MtrunA17_Chr2g0313801 | 51.862 | 376 | 173 | 2 | 4 | 371 | 1 | 376 | 3.72e-137 | 400 |
| Msa0624250 | MtrunA17_Chr2g0313791 | 53.117 | 369 | 160 | 3 | 11 | 371 | 8 | 371 | 2.56e-136 | 398 |
| Msa0624250 | MtrunA17_Chr2g0313831 | 51.187 | 379 | 174 | 3 | 1 | 371 | 1 | 376 | 7.40e-135 | 395 |
| Msa0624250 | MtrunA17_Chr2g0313771 | 51.053 | 380 | 169 | 7 | 5 | 371 | 8 | 383 | 2.74e-130 | 383 |
| Msa0624250 | MtrunA17_Chr2g0313751 | 50.670 | 373 | 172 | 5 | 10 | 371 | 32 | 403 | 1.40e-129 | 382 |
| Msa0624250 | MtrunA17_Chr2g0313811 | 53.908 | 371 | 151 | 3 | 21 | 371 | 18 | 388 | 4.03e-128 | 378 |
| Msa0624250 | MtrunA17_Chr2g0288661 | 48.285 | 379 | 187 | 3 | 1 | 371 | 1 | 378 | 2.99e-127 | 375 |
| Msa0624250 | MtrunA17_Chr2g0307301 | 49.025 | 359 | 174 | 3 | 21 | 371 | 21 | 378 | 2.91e-125 | 370 |
| Msa0624250 | MtrunA17_Chr5g0446131 | 48.780 | 369 | 180 | 3 | 11 | 371 | 7 | 374 | 1.10e-123 | 366 |
| Msa0624250 | MtrunA17_Chr2g0307291 | 47.872 | 376 | 182 | 4 | 9 | 371 | 4 | 378 | 2.63e-123 | 365 |
| Msa0624250 | MtrunA17_Chr2g0313761 | 50.888 | 338 | 157 | 3 | 42 | 371 | 35 | 371 | 4.42e-117 | 349 |
| Msa0624250 | MtrunA17_Chr8g0354561 | 52.905 | 327 | 120 | 4 | 11 | 326 | 98 | 401 | 7.87e-115 | 340 |
| Msa0624250 | MtrunA17_Chr4g0014051 | 44.709 | 378 | 197 | 5 | 4 | 371 | 13 | 388 | 3.41e-103 | 314 |
| Msa0624250 | MtrunA17_Chr4g0063221 | 35.854 | 357 | 204 | 9 | 30 | 369 | 29 | 377 | 4.90e-58 | 197 |
| Msa0624250 | MtrunA17_Chr1g0193811 | 33.521 | 355 | 218 | 8 | 30 | 371 | 27 | 376 | 1.46e-56 | 192 |
| Msa0624250 | MtrunA17_Chr7g0262111 | 34.722 | 360 | 211 | 10 | 25 | 371 | 21 | 369 | 4.90e-51 | 177 |
| Msa0624250 | MtrunA17_Chr1g0154731 | 31.073 | 354 | 224 | 8 | 29 | 371 | 23 | 367 | 1.04e-47 | 169 |
| Msa0624250 | MtrunA17_Chr6g0457421 | 27.441 | 379 | 244 | 8 | 11 | 371 | 6 | 371 | 5.22e-45 | 161 |
| Msa0624250 | MtrunA17_Chr7g0235261 | 29.863 | 365 | 222 | 10 | 31 | 369 | 12 | 368 | 3.00e-44 | 159 |
| Msa0624250 | MtrunA17_Chr7g0215181 | 27.763 | 389 | 246 | 11 | 1 | 371 | 2 | 373 | 2.18e-42 | 154 |
| Msa0624250 | MtrunA17_Chr4g0004601 | 29.730 | 370 | 221 | 11 | 27 | 369 | 32 | 389 | 2.49e-42 | 154 |
| Msa0624250 | MtrunA17_Chr8g0336361 | 30.278 | 360 | 229 | 9 | 11 | 356 | 15 | 366 | 4.06e-41 | 152 |
| Msa0624250 | MtrunA17_Chr1g0203141 | 30.508 | 354 | 225 | 10 | 29 | 369 | 28 | 373 | 1.80e-40 | 149 |
| Msa0624250 | MtrunA17_Chr6g0472221 | 30.079 | 379 | 239 | 10 | 11 | 369 | 12 | 384 | 7.40e-35 | 134 |
| Msa0624250 | MtrunA17_Chr1g0203151 | 29.714 | 350 | 229 | 9 | 29 | 369 | 28 | 369 | 1.83e-34 | 132 |
| Msa0624250 | MtrunA17_Chr3g0128461 | 25.594 | 379 | 251 | 10 | 14 | 371 | 16 | 384 | 2.53e-34 | 132 |
| Msa0624250 | MtrunA17_Chr6g0479681 | 29.060 | 351 | 231 | 9 | 29 | 369 | 29 | 371 | 3.68e-33 | 129 |
| Msa0624250 | MtrunA17_Chr8g0364081 | 29.231 | 390 | 237 | 16 | 11 | 371 | 22 | 401 | 1.67e-32 | 127 |
| Msa0624250 | MtrunA17_Chr8g0362731 | 30.350 | 257 | 163 | 8 | 121 | 369 | 18 | 266 | 2.92e-31 | 122 |
| Msa0624250 | MtrunA17_Chr6g0472161 | 27.528 | 356 | 238 | 9 | 29 | 371 | 24 | 372 | 1.83e-30 | 119 |
| Msa0624250 | MtrunA17_Chr2g0307311 | 43.220 | 118 | 62 | 2 | 41 | 154 | 6 | 122 | 5.08e-27 | 104 |
| Msa0624250 | MtrunA17_Chr2g0308651 | 29.508 | 244 | 160 | 5 | 137 | 368 | 26 | 269 | 1.39e-25 | 107 |
| Msa0624250 | MtrunA17_Chr1g0182871 | 28.968 | 252 | 142 | 6 | 137 | 371 | 27 | 258 | 1.71e-22 | 95.5 |
| Msa0624250 | MtrunA17_Chr2g0307321 | 41.935 | 93 | 50 | 1 | 165 | 253 | 1 | 93 | 4.99e-18 | 79.0 |
| Msa0624250 | MtrunA17_Chr8g0354541 | 84.211 | 38 | 6 | 0 | 334 | 371 | 1 | 38 | 5.87e-15 | 72.4 |
| Msa0624250 | MtrunA17_Chr5g0396521 | 22.896 | 297 | 188 | 7 | 104 | 371 | 117 | 401 | 2.94e-13 | 70.9 |
| Msa0624250 | MtrunA17_Chr5g0445531 | 23.871 | 310 | 198 | 11 | 81 | 368 | 58 | 351 | 1.69e-12 | 68.6 |
| Msa0624250 | MtrunA17_Chr0c19g0493771 | 24.342 | 304 | 181 | 13 | 90 | 369 | 226 | 504 | 7.45e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0624250 | AT3G14690.1 | 45.257 | 369 | 187 | 4 | 12 | 371 | 10 | 372 | 3.71e-115 | 345 |
| Msa0624250 | AT3G14690.2 | 45.257 | 369 | 187 | 4 | 12 | 371 | 45 | 407 | 1.81e-114 | 344 |
| Msa0624250 | AT3G14660.3 | 47.175 | 354 | 172 | 5 | 27 | 371 | 25 | 372 | 4.16e-113 | 335 |
| Msa0624250 | AT3G14660.1 | 46.629 | 356 | 175 | 5 | 25 | 371 | 23 | 372 | 7.11e-111 | 333 |
| Msa0624250 | AT3G14650.1 | 45.506 | 356 | 179 | 4 | 25 | 371 | 23 | 372 | 2.50e-109 | 330 |
| Msa0624250 | AT3G14610.1 | 45.000 | 360 | 182 | 5 | 22 | 371 | 19 | 372 | 8.39e-109 | 328 |
| Msa0624250 | AT3G14680.1 | 44.663 | 356 | 182 | 4 | 25 | 371 | 23 | 372 | 1.77e-106 | 322 |
| Msa0624250 | AT3G14620.1 | 44.722 | 360 | 180 | 5 | 22 | 371 | 24 | 374 | 2.29e-106 | 322 |
| Msa0624250 | AT3G14640.1 | 44.693 | 358 | 181 | 5 | 25 | 371 | 23 | 374 | 1.51e-105 | 320 |
| Msa0624250 | AT3G14640.2 | 44.693 | 358 | 181 | 5 | 25 | 371 | 45 | 396 | 4.31e-105 | 320 |
| Msa0624250 | AT3G14630.1 | 43.817 | 372 | 191 | 6 | 11 | 371 | 4 | 368 | 1.36e-102 | 312 |
| Msa0624250 | AT3G14630.2 | 43.817 | 372 | 191 | 6 | 11 | 371 | 59 | 423 | 5.06e-102 | 312 |
| Msa0624250 | AT2G26710.1 | 34.483 | 377 | 215 | 9 | 11 | 371 | 15 | 375 | 8.24e-69 | 225 |
| Msa0624250 | AT1G17060.1 | 35.125 | 279 | 173 | 3 | 12 | 282 | 12 | 290 | 1.39e-59 | 195 |
| Msa0624250 | AT3G14660.2 | 46.512 | 215 | 104 | 4 | 162 | 371 | 18 | 226 | 1.09e-58 | 194 |
| Msa0624250 | AT2G46960.2 | 32.877 | 365 | 219 | 10 | 24 | 371 | 21 | 376 | 6.37e-56 | 191 |
| Msa0624250 | AT4G27710.1 | 33.520 | 358 | 213 | 9 | 30 | 371 | 29 | 377 | 1.04e-53 | 185 |
| Msa0624250 | AT2G46950.2 | 33.521 | 355 | 209 | 11 | 33 | 371 | 87 | 430 | 1.18e-53 | 183 |
| Msa0624250 | AT4G27710.2 | 33.333 | 354 | 206 | 10 | 30 | 366 | 29 | 369 | 1.98e-52 | 178 |
| Msa0624250 | AT2G46950.1 | 33.239 | 355 | 210 | 11 | 33 | 371 | 87 | 430 | 5.96e-52 | 182 |
| Msa0624250 | AT1G75130.1 | 30.748 | 361 | 219 | 9 | 28 | 371 | 21 | 367 | 2.25e-47 | 168 |
| Msa0624250 | AT5G24910.2 | 29.670 | 364 | 220 | 11 | 36 | 371 | 37 | 392 | 2.36e-42 | 152 |
| Msa0624250 | AT5G24910.1 | 29.670 | 364 | 220 | 11 | 36 | 371 | 37 | 392 | 2.70e-41 | 152 |
| Msa0624250 | AT2G46960.1 | 34.016 | 244 | 143 | 6 | 137 | 371 | 26 | 260 | 7.69e-41 | 149 |
| Msa0624250 | AT5G52400.1 | 29.668 | 391 | 239 | 12 | 1 | 369 | 1 | 377 | 1.28e-39 | 147 |
| Msa0624250 | AT5G24900.1 | 26.741 | 359 | 232 | 11 | 36 | 371 | 37 | 387 | 1.73e-34 | 133 |
| Msa0624250 | AT5G38450.2 | 27.540 | 374 | 255 | 9 | 11 | 371 | 9 | 379 | 4.48e-33 | 127 |
| Msa0624250 | AT5G38450.1 | 27.493 | 371 | 253 | 9 | 11 | 368 | 9 | 376 | 4.99e-32 | 126 |
| Msa0624250 | AT1G67110.2 | 25.333 | 375 | 257 | 6 | 10 | 371 | 9 | 373 | 1.45e-30 | 120 |
| Msa0624250 | AT1G67110.1 | 25.269 | 372 | 255 | 6 | 10 | 368 | 9 | 370 | 1.14e-29 | 119 |
| Msa0624250 | AT5G24900.2 | 28.629 | 248 | 157 | 7 | 137 | 371 | 30 | 270 | 9.82e-28 | 113 |
| Msa0624250 | AT4G15110.1 | 23.906 | 297 | 186 | 7 | 104 | 371 | 124 | 409 | 2.72e-12 | 68.6 |
Find 79 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCCATCATGATTTGGATTT+TGG | 0.086543 | 4_3:-2213530 | None:intergenic |
| TAATTGCTATTATTCCTTTA+TGG | 0.092637 | 4_3:+2211259 | Msa0624250:CDS |
| CTTGCACGTTCTTGCCATTC+AGG | 0.181436 | 4_3:-2213480 | None:intergenic |
| AACACTTGTTTGATTTGTTC+AGG | 0.218844 | 4_3:-2212588 | None:intergenic |
| AATTGCTATTATTCCTTTAT+GGG | 0.243184 | 4_3:+2211260 | Msa0624250:CDS |
| CCACTGCATCTTTGTTAGTT+TGG | 0.254225 | 4_3:+2213433 | Msa0624250:CDS |
| TAAAGGAATAATAGCAATTA+TGG | 0.263666 | 4_3:-2211256 | None:intergenic |
| CACTTTCACCTGCTACCTTC+TGG | 0.273707 | 4_3:+2211223 | Msa0624250:CDS |
| TGATTTATTAGGCTTACTTA+TGG | 0.276821 | 4_3:+2213302 | Msa0624250:CDS |
| GCCATCAATGATGATTTATT+AGG | 0.288793 | 4_3:+2213291 | Msa0624250:CDS |
| GGTATCAAATGGTTTGGATT+TGG | 0.312604 | 4_3:-2211406 | None:intergenic |
| AGTTTGGACAATGGTGTTAT+TGG | 0.316922 | 4_3:+2213449 | Msa0624250:CDS |
| TGACTTAACCCATCATGATT+TGG | 0.331413 | 4_3:-2213537 | None:intergenic |
| GATTTCCCTCATCCTCTTGT+TGG | 0.346905 | 4_3:-2213199 | None:intergenic |
| ATTTGATCTTATAAGGTTGC+AGG | 0.349582 | 4_3:+2213010 | Msa0624250:CDS |
| ACCACAAGGAATTCAGCTTC+TGG | 0.357033 | 4_3:-2211287 | None:intergenic |
| TTTGAGTTGAACAACTTGTA+TGG | 0.373578 | 4_3:-2211363 | None:intergenic |
| GCCTAATAAATCATCATTGA+TGG | 0.373911 | 4_3:-2213292 | None:intergenic |
| TGTTTGTCTTACCATATCAT+TGG | 0.375174 | 4_3:-2213059 | None:intergenic |
| GTTGGAGGTATCAAATGGTT+TGG | 0.384202 | 4_3:-2211412 | None:intergenic |
| GGGTCCGCGATGATCACTTT+TGG | 0.384929 | 4_3:-2212567 | None:intergenic |
| CACCAAACTGTCCGAAAATA+CGG | 0.402573 | 4_3:+2211465 | Msa0624250:CDS |
| TGCAAGCAATTCTACATTGC+AGG | 0.404399 | 4_3:+2213402 | Msa0624250:CDS |
| CGTTGGATTAGTAAGTTATG+AGG | 0.413311 | 4_3:+2212668 | Msa0624250:CDS |
| CTAAGAGCACAAGGTCTTCA+AGG | 0.414544 | 4_3:+2211336 | Msa0624250:CDS |
| TCCATTTGCTAATCATATCA+TGG | 0.418520 | 4_3:-2212866 | None:intergenic |
| ATACACGCAGTCCAATGATA+TGG | 0.421677 | 4_3:+2213048 | Msa0624250:CDS |
| TGCGTGTATTAAATAGAATA+TGG | 0.423913 | 4_3:-2213034 | None:intergenic |
| GGACAATGGTGTTATTGGCT+AGG | 0.425719 | 4_3:+2213454 | Msa0624250:CDS |
| GCGATTTCTAGAACAGCATT+TGG | 0.431431 | 4_3:+2212960 | Msa0624250:CDS |
| GAGATTTATGATTTAGTCGA+GGG | 0.436844 | 4_3:+2213228 | Msa0624250:CDS |
| CCTTTCATTCAAAACTTGAC+TGG | 0.439251 | 4_3:+2212933 | Msa0624250:CDS |
| AATGGAATCGAACTTTGGTT+TGG | 0.442194 | 4_3:-2212631 | None:intergenic |
| AGCTTCTGGAAAGCCCATAA+AGG | 0.443503 | 4_3:-2211273 | None:intergenic |
| ATTGCTAAGTGTTTGTTCGT+TGG | 0.444747 | 4_3:+2212651 | Msa0624250:CDS |
| GTTCAACTCAAAGTTGAAGA+TGG | 0.446231 | 4_3:+2211374 | Msa0624250:CDS |
| ATCCTCTTGTTGGAACTTGT+AGG | 0.447907 | 4_3:-2213189 | None:intergenic |
| AATTTATCAATGTGAAATGC+AGG | 0.455594 | 4_3:-2212726 | None:intergenic |
| GATGGCTTCTCCATTGTCCA+TGG | 0.458759 | 4_3:-2213274 | None:intergenic |
| GTGGTTGAGACCAAAGAGAT+TGG | 0.463375 | 4_3:+2211305 | Msa0624250:CDS |
| ACACTTGTTTGATTTGTTCA+GGG | 0.486748 | 4_3:-2212587 | None:intergenic |
| AACCAAAATCCAAATCATGA+TGG | 0.488741 | 4_3:+2213528 | Msa0624250:CDS |
| TTTGGCAGCAGCTATGTAGC+AGG | 0.491976 | 4_3:+2212978 | Msa0624250:CDS |
| TTAGCAATGGAATCGAACTT+TGG | 0.494174 | 4_3:-2212636 | None:intergenic |
| TATTGGCTAGGTTTCCTGAA+TGG | 0.499274 | 4_3:+2213466 | Msa0624250:CDS |
| ACATCGTTGGAGGTATCAAA+TGG | 0.514681 | 4_3:-2211417 | None:intergenic |
| GCCATGATATGATTAGCAAA+TGG | 0.516109 | 4_3:+2212865 | Msa0624250:CDS |
| GTAAGAATCCAGAAGGTAGC+AGG | 0.519867 | 4_3:-2211231 | None:intergenic |
| CAAGTTCCAACAAGAGGATG+AGG | 0.523830 | 4_3:+2213193 | Msa0624250:CDS |
| AAGTTATGAGGGTGACGAAT+GGG | 0.526252 | 4_3:+2212680 | Msa0624250:CDS |
| GTTGGATTAGTAAGTTATGA+GGG | 0.532684 | 4_3:+2212669 | Msa0624250:CDS |
| ATTTATCAATGTGAAATGCA+GGG | 0.533762 | 4_3:-2212725 | None:intergenic |
| GATCTGTGGCGCAACATCGT+TGG | 0.535279 | 4_3:-2211430 | None:intergenic |
| CATGAAAAGAGTAAGACAGC+TGG | 0.540594 | 4_3:+2213351 | Msa0624250:CDS |
| AGAGATTTATGATTTAGTCG+AGG | 0.542148 | 4_3:+2213227 | Msa0624250:CDS |
| ACCAAAATCCAAATCATGAT+GGG | 0.542219 | 4_3:+2213529 | Msa0624250:CDS |
| TCCAGAAGCTGAATTCCTTG+TGG | 0.542304 | 4_3:+2211286 | Msa0624250:CDS |
| TCAAATAAGCTTGAAACTCA+AGG | 0.545756 | 4_3:+2213327 | Msa0624250:CDS |
| TACCTACAAGTTCCAACAAG+AGG | 0.546932 | 4_3:+2213187 | Msa0624250:CDS |
| TTTGATCTTATAAGGTTGCA+GGG | 0.550447 | 4_3:+2213011 | Msa0624250:CDS |
| CGAGAGAAAGCCATGGACAA+TGG | 0.556873 | 4_3:+2213264 | Msa0624250:CDS |
| CTGTGGCGCAACATCGTTGG+AGG | 0.565671 | 4_3:-2211427 | None:intergenic |
| TTATTTACAGAATATGCTAC+CGG | 0.570816 | 4_3:+2212827 | Msa0624250:intron |
| ATCTTTGTTAGTTTGGACAA+TGG | 0.573101 | 4_3:+2213440 | Msa0624250:CDS |
| AACGAACAAACACTTAGCAA+TGG | 0.579121 | 4_3:-2212649 | None:intergenic |
| CTGAATGGCAAGAACGTGCA+AGG | 0.583115 | 4_3:+2213481 | Msa0624250:CDS |
| TGATATGATTAGCAAATGGA+AGG | 0.592903 | 4_3:+2212869 | Msa0624250:CDS |
| CCAAACTAACAAAGATGCAG+TGG | 0.595400 | 4_3:-2213433 | None:intergenic |
| TAAGTTATGAGGGTGACGAA+TGG | 0.597722 | 4_3:+2212679 | Msa0624250:CDS |
| TGGCTGCTTTGAATAAATGC+CGG | 0.607297 | 4_3:-2212846 | None:intergenic |
| AATCATGTGAGATTGATGTC+CGG | 0.615391 | 4_3:+2212910 | Msa0624250:CDS |
| TATGGCTGTAAGAATCCAGA+AGG | 0.633724 | 4_3:-2211238 | None:intergenic |
| TTGGCAGCAGCTATGTAGCA+GGG | 0.636138 | 4_3:+2212979 | Msa0624250:CDS |
| AAGTTCCAACAAGAGGATGA+GGG | 0.636816 | 4_3:+2213194 | Msa0624250:CDS |
| GAAAAGCTTCTAAGAGCACA+AGG | 0.638368 | 4_3:+2211327 | Msa0624250:CDS |
| TAAAATACGAGAGAAAGCCA+TGG | 0.657399 | 4_3:+2213257 | Msa0624250:CDS |
| TCTCTTTGGTCTCAACCACA+AGG | 0.666477 | 4_3:-2211301 | None:intergenic |
| TGTACGAATGAAAAGATCTG+TGG | 0.746082 | 4_3:-2211444 | None:intergenic |
| AATACCAAAAGTGATCATCG+CGG | 0.799523 | 4_3:+2212563 | Msa0624250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACATATTTTTTTTTTTGA+AGG | - | chr4_3:2211620-2211639 | None:intergenic | 10.0% |
| !!! | ATAAATATATACCGTATTTT+CGG | - | chr4_3:2211479-2211498 | None:intergenic | 15.0% |
| !! | AAAATACGGTATATATTTAT+AGG | + | chr4_3:2211479-2211498 | Msa0624250:intron | 15.0% |
| !!! | ATGTTAACTTTTTTGTTTTT+TGG | + | chr4_3:2211569-2211588 | Msa0624250:intron | 15.0% |
| !!! | TGTTAACTTTTTTGTTTTTT+GGG | + | chr4_3:2211570-2211589 | Msa0624250:intron | 15.0% |
| !!! | TAAACAAATATTTTTACAGA+AGG | - | chr4_3:2211672-2211691 | None:intergenic | 15.0% |
| !!! | ATTTGAAGATTTTTTGATTT+TGG | + | chr4_3:2211707-2211726 | Msa0624250:intron | 15.0% |
| !!! | AATTTGAAATTTTTTGGTTT+TGG | - | chr4_3:2211879-2211898 | None:intergenic | 15.0% |
| !!! | ATCTAAACAATTTTTTTTAC+AGG | + | chr4_3:2211910-2211929 | Msa0624250:intron | 15.0% |
| !!! | TCTAAACAATTTTTTTTACA+GGG | + | chr4_3:2211911-2211930 | Msa0624250:intron | 15.0% |
| !! | TTTGCTTATAAAAAAACTAT+GGG | - | chr4_3:2211980-2211999 | None:intergenic | 15.0% |
| !! | ATTTGCTTATAAAAAAACTA+TGG | - | chr4_3:2211981-2212000 | None:intergenic | 15.0% |
| !!! | TCACATAAATTTTATAGAAT+TGG | - | chr4_3:2212174-2212193 | None:intergenic | 15.0% |
| !! | CAAAAATATTTGATCTTATA+AGG | + | chr4_3:2213003-2213022 | Msa0624250:CDS | 15.0% |
| !! | TAAATAATGATGACTAAATT+TGG | - | chr4_3:2213697-2213716 | None:intergenic | 15.0% |
| !!! | TTTTAAGAAAGTTTTTTGTT+GGG | + | chr4_3:2213908-2213927 | Msa0624250:intron | 15.0% |
| !!! | TCAAAAGTTGATATATTTAT+AGG | + | chr4_3:2213936-2213955 | Msa0624250:intron | 15.0% |
| !! | TAAAGGAATAATAGCAATTA+TGG | - | chr4_3:2211259-2211278 | None:intergenic | 20.0% |
| !!! | TAATTGCTATTATTCCTTTA+TGG | + | chr4_3:2211259-2211278 | Msa0624250:CDS | 20.0% |
| !!! | AATTGCTATTATTCCTTTAT+GGG | + | chr4_3:2211260-2211279 | Msa0624250:CDS | 20.0% |
| !! | AAAATATTGTCTTCAAGTAA+AGG | - | chr4_3:2211531-2211550 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGAAGGATTACAA+GGG | - | chr4_3:2211610-2211629 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGAAGGATTACA+AGG | - | chr4_3:2211611-2211630 | None:intergenic | 20.0% |
| !! | CAAAAAATCTTCAAATTACA+GGG | - | chr4_3:2211703-2211722 | None:intergenic | 20.0% |
| !! | TCAAAAAATCTTCAAATTAC+AGG | - | chr4_3:2211704-2211723 | None:intergenic | 20.0% |
| !! | AAACCGAAATATTAATGATA+TGG | - | chr4_3:2211810-2211829 | None:intergenic | 20.0% |
| !!! | CCATGTAATTTGAAATTTTT+TGG | - | chr4_3:2211885-2211904 | None:intergenic | 20.0% |
| !! | CCAAAAAATTTCAAATTACA+TGG | + | chr4_3:2211882-2211901 | Msa0624250:intron | 20.0% |
| !! | AAAATTTCAAATTACATGGT+TGG | + | chr4_3:2211886-2211905 | Msa0624250:intron | 20.0% |
| !!! | ATTTTTTTTACAGGGTAAAT+CGG | + | chr4_3:2211919-2211938 | Msa0624250:intron | 20.0% |
| !!! | TTTTCTATCACTAAATCTAA+TGG | + | chr4_3:2212120-2212139 | Msa0624250:intron | 20.0% |
| !!! | AGTTTTGTTTGAGAAATTTT+AGG | - | chr4_3:2212436-2212455 | None:intergenic | 20.0% |
| !! | TAGTCATCATTATTTAACAA+TGG | + | chr4_3:2213701-2213720 | Msa0624250:intron | 20.0% |
| !! | ATGTTTATCGTAAATATACA+TGG | - | chr4_3:2213844-2213863 | None:intergenic | 20.0% |
| !! | AAAAAGCGAGAAATATTTAT+AGG | + | chr4_3:2213878-2213897 | Msa0624250:intron | 20.0% |
| !!! | GTTTTAAGAAAGTTTTTTGT+TGG | + | chr4_3:2213907-2213926 | Msa0624250:intron | 20.0% |
| ! | AGAAATCGCTAATATTACAA+GGG | - | chr4_3:2211643-2211662 | None:intergenic | 25.0% |
| ! | TAGAAATCGCTAATATTACA+AGG | - | chr4_3:2211644-2211663 | None:intergenic | 25.0% |
| ! | TTTGTAATTTGATGTCATGA+AGG | - | chr4_3:2211734-2211753 | None:intergenic | 25.0% |
| ! | TGAAATTCTCTCAAATTACA+AGG | - | chr4_3:2211775-2211794 | None:intergenic | 25.0% |
| ! | GAAATATTAATGATATGGCA+GGG | - | chr4_3:2211805-2211824 | None:intergenic | 25.0% |
| ! | CTGCCATATCATTAATATTT+CGG | + | chr4_3:2211804-2211823 | Msa0624250:intron | 25.0% |
| !!! | TACTTCATGTTGATTTGATA+TGG | - | chr4_3:2212354-2212373 | None:intergenic | 25.0% |
| !! | AACTATCTAGAATGATACTA+TGG | + | chr4_3:2212452-2212471 | Msa0624250:intron | 25.0% |
| !! | ACTATCTAGAATGATACTAT+GGG | + | chr4_3:2212453-2212472 | Msa0624250:intron | 25.0% |
| ! | CTAATGAATAATTGATGTGT+AGG | + | chr4_3:2212513-2212532 | Msa0624250:intron | 25.0% |
| ! | ATTTATCAATGTGAAATGCA+GGG | - | chr4_3:2212728-2212747 | None:intergenic | 25.0% |
| ! | AATTTATCAATGTGAAATGC+AGG | - | chr4_3:2212729-2212748 | None:intergenic | 25.0% |
| ! | ACATTGATAAATTGAGAGTA+AGG | + | chr4_3:2212736-2212755 | Msa0624250:intron | 25.0% |
| ! | GCATATTCTGTAAATAAGTT+AGG | - | chr4_3:2212824-2212843 | None:intergenic | 25.0% |
| ! | TTATTTACAGAATATGCTAC+CGG | + | chr4_3:2212827-2212846 | Msa0624250:intron | 25.0% |
| ! | TGCGTGTATTAAATAGAATA+TGG | - | chr4_3:2213037-2213056 | None:intergenic | 25.0% |
| ! | CAGGTGATGTTAATTATTTA+GGG | - | chr4_3:2213143-2213162 | None:intergenic | 25.0% |
| ! | TCAGGTGATGTTAATTATTT+AGG | - | chr4_3:2213144-2213163 | None:intergenic | 25.0% |
| ! | CTAGAAACACATTATATATC+AGG | - | chr4_3:2213162-2213181 | None:intergenic | 25.0% |
| ! | CTGATATATAATGTGTTTCT+AGG | + | chr4_3:2213160-2213179 | Msa0624250:intron | 25.0% |
| ! | TGATTTATTAGGCTTACTTA+TGG | + | chr4_3:2213302-2213321 | Msa0624250:CDS | 25.0% |
| ! | ATGATGACTAAATTTGGTAA+CGG | - | chr4_3:2213691-2213710 | None:intergenic | 25.0% |
| !!! | GAGACCTTTAAGATATATTA+AGG | + | chr4_3:2213771-2213790 | Msa0624250:intron | 25.0% |
| ! | GAGACCTTAATATATCTTAA+AGG | - | chr4_3:2213778-2213797 | None:intergenic | 25.0% |
| !! | TTTGAGTTGAACAACTTGTA+TGG | - | chr4_3:2211366-2211385 | None:intergenic | 30.0% |
| CGAAATATTAATGATATGGC+AGG | - | chr4_3:2211806-2211825 | None:intergenic | 30.0% | |
| TACAAAATCGATGATATGAC+GGG | - | chr4_3:2211836-2211855 | None:intergenic | 30.0% | |
| GTACAAAATCGATGATATGA+CGG | - | chr4_3:2211837-2211856 | None:intergenic | 30.0% | |
| TTGACAAAAATGCTAAACCT+AGG | + | chr4_3:2212219-2212238 | Msa0624250:intron | 30.0% | |
| !! | TTCATGTTGATTTGATATGG+TGG | - | chr4_3:2212351-2212370 | None:intergenic | 30.0% |
| !!! | TTTGAGAAATTTTAGGACAG+TGG | - | chr4_3:2212429-2212448 | None:intergenic | 30.0% |
| TATTCATTAGCAATCATCGT+TGG | - | chr4_3:2212503-2212522 | None:intergenic | 30.0% | |
| !! | TAGGCAAGAGTTCATTTTTA+TGG | + | chr4_3:2212532-2212551 | Msa0624250:intron | 30.0% |
| !! | AGGCAAGAGTTCATTTTTAT+GGG | + | chr4_3:2212533-2212552 | Msa0624250:intron | 30.0% |
| !! | AAGAGTTCATTTTTATGGGA+AGG | + | chr4_3:2212537-2212556 | Msa0624250:CDS | 30.0% |
| !! | ACACTTGTTTGATTTGTTCA+GGG | - | chr4_3:2212590-2212609 | None:intergenic | 30.0% |
| !! | AACACTTGTTTGATTTGTTC+AGG | - | chr4_3:2212591-2212610 | None:intergenic | 30.0% |
| !! | GTTGGATTAGTAAGTTATGA+GGG | + | chr4_3:2212669-2212688 | Msa0624250:CDS | 30.0% |
| ! | TCCATTTGCTAATCATATCA+TGG | - | chr4_3:2212869-2212888 | None:intergenic | 30.0% |
| TGATATGATTAGCAAATGGA+AGG | + | chr4_3:2212869-2212888 | Msa0624250:CDS | 30.0% | |
| ATTTGATCTTATAAGGTTGC+AGG | + | chr4_3:2213010-2213029 | Msa0624250:CDS | 30.0% | |
| TTTGATCTTATAAGGTTGCA+GGG | + | chr4_3:2213011-2213030 | Msa0624250:CDS | 30.0% | |
| TGTTTGTCTTACCATATCAT+TGG | - | chr4_3:2213062-2213081 | None:intergenic | 30.0% | |
| AGAGATTTATGATTTAGTCG+AGG | + | chr4_3:2213227-2213246 | Msa0624250:CDS | 30.0% | |
| GAGATTTATGATTTAGTCGA+GGG | + | chr4_3:2213228-2213247 | Msa0624250:CDS | 30.0% | |
| GCCATCAATGATGATTTATT+AGG | + | chr4_3:2213291-2213310 | Msa0624250:CDS | 30.0% | |
| GCCTAATAAATCATCATTGA+TGG | - | chr4_3:2213295-2213314 | None:intergenic | 30.0% | |
| TCAAATAAGCTTGAAACTCA+AGG | + | chr4_3:2213327-2213346 | Msa0624250:CDS | 30.0% | |
| ! | ATCTTTGTTAGTTTGGACAA+TGG | + | chr4_3:2213440-2213459 | Msa0624250:CDS | 30.0% |
| ! | CAAGAAGTTTTGCAAGTTTT+TGG | + | chr4_3:2213504-2213523 | Msa0624250:CDS | 30.0% |
| AACCAAAATCCAAATCATGA+TGG | + | chr4_3:2213528-2213547 | Msa0624250:CDS | 30.0% | |
| ACCAAAATCCAAATCATGAT+GGG | + | chr4_3:2213529-2213548 | Msa0624250:CDS | 30.0% | |
| ATGTCATAAAAAAAGTCACG+TGG | - | chr4_3:2213745-2213764 | None:intergenic | 30.0% | |
| !!! | ACGTGACTTTTTTTATGACA+TGG | + | chr4_3:2213744-2213763 | Msa0624250:intron | 30.0% |
| ATATATTAAGGTCTCCACAA+TGG | + | chr4_3:2213783-2213802 | Msa0624250:intron | 30.0% | |
| ! | AGAAGCTTTTCCAATCTCTT+TGG | - | chr4_3:2211318-2211337 | None:intergenic | 35.0% |
| GTTCAACTCAAAGTTGAAGA+TGG | + | chr4_3:2211374-2211393 | Msa0624250:CDS | 35.0% | |
| ! | GGTATCAAATGGTTTGGATT+TGG | - | chr4_3:2211409-2211428 | None:intergenic | 35.0% |
| TGTACGAATGAAAAGATCTG+TGG | - | chr4_3:2211447-2211466 | None:intergenic | 35.0% | |
| !! | GCATATGTTGTTTCGAATCT+AGG | + | chr4_3:2211501-2211520 | Msa0624250:intron | 35.0% |
| ACAAAATCGATGATATGACG+GGG | - | chr4_3:2211835-2211854 | None:intergenic | 35.0% | |
| TGTACAGTCAAAACTCATGA+AGG | + | chr4_3:2211852-2211871 | Msa0624250:intron | 35.0% | |
| TCGGAATTCGCTAATATTAG+AGG | + | chr4_3:2211938-2211957 | Msa0624250:intron | 35.0% | |
| CGGAATTCGCTAATATTAGA+GGG | + | chr4_3:2211939-2211958 | Msa0624250:intron | 35.0% | |
| GGAATTCGCTAATATTAGAG+GGG | + | chr4_3:2211940-2211959 | Msa0624250:intron | 35.0% | |
| AAAATGCTAACACGTCATTC+GGG | - | chr4_3:2212048-2212067 | None:intergenic | 35.0% | |
| CAAAATGCTAACACGTCATT+CGG | - | chr4_3:2212049-2212068 | None:intergenic | 35.0% | |
| ! | AATGACGTGTTAGCATTTTG+TGG | + | chr4_3:2212049-2212068 | Msa0624250:intron | 35.0% |
| TTGTTAGACACAATCATCGT+TGG | - | chr4_3:2212378-2212397 | None:intergenic | 35.0% | |
| CTAGAATGATACTATGGGTT+TGG | + | chr4_3:2212458-2212477 | Msa0624250:intron | 35.0% | |
| AATACCAAAAGTGATCATCG+CGG | + | chr4_3:2212563-2212582 | Msa0624250:CDS | 35.0% | |
| AATGGAATCGAACTTTGGTT+TGG | - | chr4_3:2212634-2212653 | None:intergenic | 35.0% | |
| TTAGCAATGGAATCGAACTT+TGG | - | chr4_3:2212639-2212658 | None:intergenic | 35.0% | |
| AACGAACAAACACTTAGCAA+TGG | - | chr4_3:2212652-2212671 | None:intergenic | 35.0% | |
| ATTGCTAAGTGTTTGTTCGT+TGG | + | chr4_3:2212651-2212670 | Msa0624250:CDS | 35.0% | |
| !! | CGTTGGATTAGTAAGTTATG+AGG | + | chr4_3:2212668-2212687 | Msa0624250:CDS | 35.0% |
| GCCATGATATGATTAGCAAA+TGG | + | chr4_3:2212865-2212884 | Msa0624250:CDS | 35.0% | |
| AATCATGTGAGATTGATGTC+CGG | + | chr4_3:2212910-2212929 | Msa0624250:CDS | 35.0% | |
| !!! | TCAAGTTTTGAATGAAAGGC+CGG | - | chr4_3:2212932-2212951 | None:intergenic | 35.0% |
| !!! | CCAGTCAAGTTTTGAATGAA+AGG | - | chr4_3:2212936-2212955 | None:intergenic | 35.0% |
| CCTTTCATTCAAAACTTGAC+TGG | + | chr4_3:2212933-2212952 | Msa0624250:CDS | 35.0% | |
| GATATGGTAAGACAAACATG+TGG | + | chr4_3:2213064-2213083 | Msa0624250:intron | 35.0% | |
| ! | GTAAGACAAACATGTGGTTT+TGG | + | chr4_3:2213070-2213089 | Msa0624250:intron | 35.0% |
| TAAAATACGAGAGAAAGCCA+TGG | + | chr4_3:2213257-2213276 | Msa0624250:CDS | 35.0% | |
| !! | AGTTTGGACAATGGTGTTAT+TGG | + | chr4_3:2213449-2213468 | Msa0624250:CDS | 35.0% |
| !! | ACCCATCATGATTTGGATTT+TGG | - | chr4_3:2213533-2213552 | None:intergenic | 35.0% |
| TGACTTAACCCATCATGATT+TGG | - | chr4_3:2213540-2213559 | None:intergenic | 35.0% | |
| ATGTGAGGATGAAAGTTTGA+TGG | - | chr4_3:2213663-2213682 | None:intergenic | 35.0% | |
| !! | TTGGTAACGGAAAATATGTG+AGG | - | chr4_3:2213678-2213697 | None:intergenic | 35.0% |
| ! | TTGTTGATATTGTGCCATTG+TGG | - | chr4_3:2213800-2213819 | None:intergenic | 35.0% |
| ATCAACAAAAAAAAGCCACG+TGG | + | chr4_3:2213812-2213831 | Msa0624250:intron | 35.0% | |
| TATGGCTGTAAGAATCCAGA+AGG | - | chr4_3:2211241-2211260 | None:intergenic | 40.0% | |
| ! | GAAAAGCTTCTAAGAGCACA+AGG | + | chr4_3:2211327-2211346 | Msa0624250:CDS | 40.0% |
| !! | GTTGGAGGTATCAAATGGTT+TGG | - | chr4_3:2211415-2211434 | None:intergenic | 40.0% |
| !! | ACATCGTTGGAGGTATCAAA+TGG | - | chr4_3:2211420-2211439 | None:intergenic | 40.0% |
| CACCAAACTGTCCGAAAATA+CGG | + | chr4_3:2211465-2211484 | Msa0624250:CDS | 40.0% | |
| ! | TACCGTATTTTCGGACAGTT+TGG | - | chr4_3:2211470-2211489 | None:intergenic | 40.0% |
| CAAAATCGATGATATGACGG+GGG | - | chr4_3:2211834-2211853 | None:intergenic | 40.0% | |
| ! | CGTGTTAGCATTTTGTGGTA+CGG | + | chr4_3:2212054-2212073 | Msa0624250:intron | 40.0% |
| ! | TTAGCATTTTGTGGTACGGA+TGG | + | chr4_3:2212058-2212077 | Msa0624250:intron | 40.0% |
| GATCCTCTACATCAATTGCA+CGG | - | chr4_3:2212152-2212171 | None:intergenic | 40.0% | |
| AAATGCTAAACCTAGGAGTC+TGG | + | chr4_3:2212226-2212245 | Msa0624250:intron | 40.0% | |
| TAAGTTATGAGGGTGACGAA+TGG | + | chr4_3:2212679-2212698 | Msa0624250:CDS | 40.0% | |
| AAGTTATGAGGGTGACGAAT+GGG | + | chr4_3:2212680-2212699 | Msa0624250:CDS | 40.0% | |
| ! | TGGCTGCTTTGAATAAATGC+CGG | - | chr4_3:2212849-2212868 | None:intergenic | 40.0% |
| !! | GCGATTTCTAGAACAGCATT+TGG | + | chr4_3:2212960-2212979 | Msa0624250:CDS | 40.0% |
| ATACACGCAGTCCAATGATA+TGG | + | chr4_3:2213048-2213067 | Msa0624250:CDS | 40.0% | |
| TACCTACAAGTTCCAACAAG+AGG | + | chr4_3:2213187-2213206 | Msa0624250:CDS | 40.0% | |
| ATCCTCTTGTTGGAACTTGT+AGG | - | chr4_3:2213192-2213211 | None:intergenic | 40.0% | |
| AAGTTCCAACAAGAGGATGA+GGG | + | chr4_3:2213194-2213213 | Msa0624250:CDS | 40.0% | |
| CATGAAAAGAGTAAGACAGC+TGG | + | chr4_3:2213351-2213370 | Msa0624250:CDS | 40.0% | |
| TGCAAGCAATTCTACATTGC+AGG | + | chr4_3:2213402-2213421 | Msa0624250:CDS | 40.0% | |
| CCAAACTAACAAAGATGCAG+TGG | - | chr4_3:2213436-2213455 | None:intergenic | 40.0% | |
| CCACTGCATCTTTGTTAGTT+TGG | + | chr4_3:2213433-2213452 | Msa0624250:CDS | 40.0% | |
| ! | TATTGGCTAGGTTTCCTGAA+TGG | + | chr4_3:2213466-2213485 | Msa0624250:CDS | 40.0% |
| TATACATGGTAAGTACCACG+TGG | - | chr4_3:2213830-2213849 | None:intergenic | 40.0% | |
| GTAAGAATCCAGAAGGTAGC+AGG | - | chr4_3:2211234-2211253 | None:intergenic | 45.0% | |
| ! | AGCTTCTGGAAAGCCCATAA+AGG | - | chr4_3:2211276-2211295 | None:intergenic | 45.0% |
| TCCAGAAGCTGAATTCCTTG+TGG | + | chr4_3:2211286-2211305 | Msa0624250:CDS | 45.0% | |
| ACCACAAGGAATTCAGCTTC+TGG | - | chr4_3:2211290-2211309 | None:intergenic | 45.0% | |
| TCTCTTTGGTCTCAACCACA+AGG | - | chr4_3:2211304-2211323 | None:intergenic | 45.0% | |
| GTGGTTGAGACCAAAGAGAT+TGG | + | chr4_3:2211305-2211324 | Msa0624250:CDS | 45.0% | |
| ! | CTAAGAGCACAAGGTCTTCA+AGG | + | chr4_3:2211336-2211355 | Msa0624250:CDS | 45.0% |
| TAACACGTCATTCGGGAAAC+TGG | - | chr4_3:2212041-2212060 | None:intergenic | 45.0% | |
| TTGCCGTGCAATTGATGTAG+AGG | + | chr4_3:2212146-2212165 | Msa0624250:intron | 45.0% | |
| GTTTCGAAATCCAGACTCCT+AGG | - | chr4_3:2212239-2212258 | None:intergenic | 45.0% | |
| GGAGTCTGGATTTCGAAACA+AGG | + | chr4_3:2212240-2212259 | Msa0624250:intron | 45.0% | |
| GACTTTCAAGCAACCACACT+TGG | + | chr4_3:2212262-2212281 | Msa0624250:intron | 45.0% | |
| GCAACTAGACGAACATGACA+TGG | + | chr4_3:2212284-2212303 | Msa0624250:intron | 45.0% | |
| CTAGACGAACATGACATGGT+TGG | + | chr4_3:2212288-2212307 | Msa0624250:intron | 45.0% | |
| ! | AGTGGTTTGCAACTCTTTCG+AGG | - | chr4_3:2212411-2212430 | None:intergenic | 45.0% |
| CAAGTTCCAACAAGAGGATG+AGG | + | chr4_3:2213193-2213212 | Msa0624250:CDS | 45.0% | |
| GATTTCCCTCATCCTCTTGT+TGG | - | chr4_3:2213202-2213221 | None:intergenic | 45.0% | |
| !! | GGACAATGGTGTTATTGGCT+AGG | + | chr4_3:2213454-2213473 | Msa0624250:CDS | 45.0% |
| CACTTTCACCTGCTACCTTC+TGG | + | chr4_3:2211223-2211242 | Msa0624250:CDS | 50.0% | |
| ATTCGGGAAACTGGTCGTGA+AGG | - | chr4_3:2212032-2212051 | None:intergenic | 50.0% | |
| GTTCGTCTAGTTGCCAAGTG+TGG | - | chr4_3:2212278-2212297 | None:intergenic | 50.0% | |
| TTTGGCAGCAGCTATGTAGC+AGG | + | chr4_3:2212978-2212997 | Msa0624250:CDS | 50.0% | |
| TTGGCAGCAGCTATGTAGCA+GGG | + | chr4_3:2212979-2212998 | Msa0624250:CDS | 50.0% | |
| CGAGAGAAAGCCATGGACAA+TGG | + | chr4_3:2213264-2213283 | Msa0624250:CDS | 50.0% | |
| GATGGCTTCTCCATTGTCCA+TGG | - | chr4_3:2213277-2213296 | None:intergenic | 50.0% | |
| CTTGCACGTTCTTGCCATTC+AGG | - | chr4_3:2213483-2213502 | None:intergenic | 50.0% | |
| CTGAATGGCAAGAACGTGCA+AGG | + | chr4_3:2213481-2213500 | Msa0624250:CDS | 50.0% | |
| GATCTGTGGCGCAACATCGT+TGG | - | chr4_3:2211433-2211452 | None:intergenic | 55.0% | |
| ! | GGGTCCGCGATGATCACTTT+TGG | - | chr4_3:2212570-2212589 | None:intergenic | 55.0% |
| CTGTGGCGCAACATCGTTGG+AGG | - | chr4_3:2211430-2211449 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 2211216 | 2213963 | 2211216 | ID=Msa0624250;Name=Msa0624250 |
| chr4_3 | mRNA | 2211216 | 2213963 | 2211216 | ID=Msa0624250-mRNA-1;Parent=Msa0624250;Name=Msa0624250-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0|0|0|0.8|1|1|5|0|371 |
| chr4_3 | exon | 2211216 | 2211486 | 2211216 | ID=Msa0624250-mRNA-1:exon:582;Parent=Msa0624250-mRNA-1 |
| chr4_3 | exon | 2212535 | 2212752 | 2212535 | ID=Msa0624250-mRNA-1:exon:583;Parent=Msa0624250-mRNA-1 |
| chr4_3 | exon | 2212837 | 2213069 | 2212837 | ID=Msa0624250-mRNA-1:exon:584;Parent=Msa0624250-mRNA-1 |
| chr4_3 | exon | 2213182 | 2213569 | 2213182 | ID=Msa0624250-mRNA-1:exon:585;Parent=Msa0624250-mRNA-1 |
| chr4_3 | exon | 2213958 | 2213963 | 2213958 | ID=Msa0624250-mRNA-1:exon:586;Parent=Msa0624250-mRNA-1 |
| chr4_3 | CDS | 2211216 | 2211486 | 2211216 | ID=Msa0624250-mRNA-1:cds;Parent=Msa0624250-mRNA-1 |
| chr4_3 | CDS | 2212535 | 2212752 | 2212535 | ID=Msa0624250-mRNA-1:cds;Parent=Msa0624250-mRNA-1 |
| chr4_3 | CDS | 2212837 | 2213069 | 2212837 | ID=Msa0624250-mRNA-1:cds;Parent=Msa0624250-mRNA-1 |
| chr4_3 | CDS | 2213182 | 2213569 | 2213182 | ID=Msa0624250-mRNA-1:cds;Parent=Msa0624250-mRNA-1 |
| chr4_3 | CDS | 2213958 | 2213963 | 2213958 | ID=Msa0624250-mRNA-1:cds;Parent=Msa0624250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
