Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0624350 | XP_004511068.1 | 75.789 | 380 | 83 | 2 | 1 | 371 | 1 | 380 | 0.0 | 605 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0624350 | sp|H1A988|C7254_GLYUR | 62.434 | 378 | 131 | 5 | 5 | 371 | 6 | 383 | 1.06e-171 | 491 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0624350 | A0A1S2YWK3 | 75.789 | 380 | 83 | 2 | 1 | 371 | 1 | 380 | 0.0 | 605 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0624250 | Msa0624350 | 0.976037 | 4.586516e-141 | -8.615850e-47 |
| Msa0624350 | Msa1190310 | 0.870019 | 2.001952e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0624350 | MtrunA17_Chr8g0354571 | 61.290 | 372 | 130 | 3 | 11 | 371 | 16 | 384 | 2.59e-163 | 467 |
| Msa0624350 | MtrunA17_Chr8g0354511 | 60.215 | 372 | 134 | 3 | 11 | 371 | 16 | 384 | 7.65e-161 | 461 |
| Msa0624350 | MtrunA17_Chr8g0354531 | 61.662 | 373 | 128 | 5 | 10 | 371 | 137 | 505 | 2.25e-160 | 464 |
| Msa0624350 | MtrunA17_Chr2g0313781 | 51.546 | 388 | 168 | 3 | 4 | 371 | 1 | 388 | 6.37e-139 | 405 |
| Msa0624350 | MtrunA17_Chr2g0313821 | 52.128 | 376 | 172 | 2 | 4 | 371 | 1 | 376 | 3.15e-138 | 403 |
| Msa0624350 | MtrunA17_Chr2g0313801 | 51.862 | 376 | 173 | 2 | 4 | 371 | 1 | 376 | 3.72e-137 | 400 |
| Msa0624350 | MtrunA17_Chr2g0313791 | 53.117 | 369 | 160 | 3 | 11 | 371 | 8 | 371 | 2.56e-136 | 398 |
| Msa0624350 | MtrunA17_Chr2g0313831 | 51.187 | 379 | 174 | 3 | 1 | 371 | 1 | 376 | 7.40e-135 | 395 |
| Msa0624350 | MtrunA17_Chr2g0313771 | 51.053 | 380 | 169 | 7 | 5 | 371 | 8 | 383 | 2.74e-130 | 383 |
| Msa0624350 | MtrunA17_Chr2g0313751 | 50.670 | 373 | 172 | 5 | 10 | 371 | 32 | 403 | 1.40e-129 | 382 |
| Msa0624350 | MtrunA17_Chr2g0313811 | 53.908 | 371 | 151 | 3 | 21 | 371 | 18 | 388 | 4.03e-128 | 378 |
| Msa0624350 | MtrunA17_Chr2g0288661 | 48.285 | 379 | 187 | 3 | 1 | 371 | 1 | 378 | 2.99e-127 | 375 |
| Msa0624350 | MtrunA17_Chr2g0307301 | 49.025 | 359 | 174 | 3 | 21 | 371 | 21 | 378 | 2.91e-125 | 370 |
| Msa0624350 | MtrunA17_Chr5g0446131 | 48.780 | 369 | 180 | 3 | 11 | 371 | 7 | 374 | 1.10e-123 | 366 |
| Msa0624350 | MtrunA17_Chr2g0307291 | 47.872 | 376 | 182 | 4 | 9 | 371 | 4 | 378 | 2.63e-123 | 365 |
| Msa0624350 | MtrunA17_Chr2g0313761 | 50.888 | 338 | 157 | 3 | 42 | 371 | 35 | 371 | 4.42e-117 | 349 |
| Msa0624350 | MtrunA17_Chr8g0354561 | 52.905 | 327 | 120 | 4 | 11 | 326 | 98 | 401 | 7.87e-115 | 340 |
| Msa0624350 | MtrunA17_Chr4g0014051 | 44.709 | 378 | 197 | 5 | 4 | 371 | 13 | 388 | 3.41e-103 | 314 |
| Msa0624350 | MtrunA17_Chr4g0063221 | 35.854 | 357 | 204 | 9 | 30 | 369 | 29 | 377 | 4.90e-58 | 197 |
| Msa0624350 | MtrunA17_Chr1g0193811 | 33.521 | 355 | 218 | 8 | 30 | 371 | 27 | 376 | 1.46e-56 | 192 |
| Msa0624350 | MtrunA17_Chr7g0262111 | 34.722 | 360 | 211 | 10 | 25 | 371 | 21 | 369 | 4.90e-51 | 177 |
| Msa0624350 | MtrunA17_Chr1g0154731 | 31.073 | 354 | 224 | 8 | 29 | 371 | 23 | 367 | 1.04e-47 | 169 |
| Msa0624350 | MtrunA17_Chr6g0457421 | 27.441 | 379 | 244 | 8 | 11 | 371 | 6 | 371 | 5.22e-45 | 161 |
| Msa0624350 | MtrunA17_Chr7g0235261 | 29.863 | 365 | 222 | 10 | 31 | 369 | 12 | 368 | 3.00e-44 | 159 |
| Msa0624350 | MtrunA17_Chr7g0215181 | 27.763 | 389 | 246 | 11 | 1 | 371 | 2 | 373 | 2.18e-42 | 154 |
| Msa0624350 | MtrunA17_Chr4g0004601 | 29.730 | 370 | 221 | 11 | 27 | 369 | 32 | 389 | 2.49e-42 | 154 |
| Msa0624350 | MtrunA17_Chr8g0336361 | 30.278 | 360 | 229 | 9 | 11 | 356 | 15 | 366 | 4.06e-41 | 152 |
| Msa0624350 | MtrunA17_Chr1g0203141 | 30.508 | 354 | 225 | 10 | 29 | 369 | 28 | 373 | 1.80e-40 | 149 |
| Msa0624350 | MtrunA17_Chr6g0472221 | 30.079 | 379 | 239 | 10 | 11 | 369 | 12 | 384 | 7.40e-35 | 134 |
| Msa0624350 | MtrunA17_Chr1g0203151 | 29.714 | 350 | 229 | 9 | 29 | 369 | 28 | 369 | 1.83e-34 | 132 |
| Msa0624350 | MtrunA17_Chr3g0128461 | 25.594 | 379 | 251 | 10 | 14 | 371 | 16 | 384 | 2.53e-34 | 132 |
| Msa0624350 | MtrunA17_Chr6g0479681 | 29.060 | 351 | 231 | 9 | 29 | 369 | 29 | 371 | 3.68e-33 | 129 |
| Msa0624350 | MtrunA17_Chr8g0364081 | 29.231 | 390 | 237 | 16 | 11 | 371 | 22 | 401 | 1.67e-32 | 127 |
| Msa0624350 | MtrunA17_Chr8g0362731 | 30.350 | 257 | 163 | 8 | 121 | 369 | 18 | 266 | 2.92e-31 | 122 |
| Msa0624350 | MtrunA17_Chr6g0472161 | 27.528 | 356 | 238 | 9 | 29 | 371 | 24 | 372 | 1.83e-30 | 119 |
| Msa0624350 | MtrunA17_Chr2g0307311 | 43.220 | 118 | 62 | 2 | 41 | 154 | 6 | 122 | 5.08e-27 | 104 |
| Msa0624350 | MtrunA17_Chr2g0308651 | 29.508 | 244 | 160 | 5 | 137 | 368 | 26 | 269 | 1.39e-25 | 107 |
| Msa0624350 | MtrunA17_Chr1g0182871 | 28.968 | 252 | 142 | 6 | 137 | 371 | 27 | 258 | 1.71e-22 | 95.5 |
| Msa0624350 | MtrunA17_Chr2g0307321 | 41.935 | 93 | 50 | 1 | 165 | 253 | 1 | 93 | 4.99e-18 | 79.0 |
| Msa0624350 | MtrunA17_Chr8g0354541 | 84.211 | 38 | 6 | 0 | 334 | 371 | 1 | 38 | 5.87e-15 | 72.4 |
| Msa0624350 | MtrunA17_Chr5g0396521 | 22.896 | 297 | 188 | 7 | 104 | 371 | 117 | 401 | 2.94e-13 | 70.9 |
| Msa0624350 | MtrunA17_Chr5g0445531 | 23.871 | 310 | 198 | 11 | 81 | 368 | 58 | 351 | 1.69e-12 | 68.6 |
| Msa0624350 | MtrunA17_Chr0c19g0493771 | 24.342 | 304 | 181 | 13 | 90 | 369 | 226 | 504 | 7.45e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0624350 | AT3G14690.1 | 45.257 | 369 | 187 | 4 | 12 | 371 | 10 | 372 | 3.71e-115 | 345 |
| Msa0624350 | AT3G14690.2 | 45.257 | 369 | 187 | 4 | 12 | 371 | 45 | 407 | 1.81e-114 | 344 |
| Msa0624350 | AT3G14660.3 | 47.175 | 354 | 172 | 5 | 27 | 371 | 25 | 372 | 4.16e-113 | 335 |
| Msa0624350 | AT3G14660.1 | 46.629 | 356 | 175 | 5 | 25 | 371 | 23 | 372 | 7.11e-111 | 333 |
| Msa0624350 | AT3G14650.1 | 45.506 | 356 | 179 | 4 | 25 | 371 | 23 | 372 | 2.50e-109 | 330 |
| Msa0624350 | AT3G14610.1 | 45.000 | 360 | 182 | 5 | 22 | 371 | 19 | 372 | 8.39e-109 | 328 |
| Msa0624350 | AT3G14680.1 | 44.663 | 356 | 182 | 4 | 25 | 371 | 23 | 372 | 1.77e-106 | 322 |
| Msa0624350 | AT3G14620.1 | 44.722 | 360 | 180 | 5 | 22 | 371 | 24 | 374 | 2.29e-106 | 322 |
| Msa0624350 | AT3G14640.1 | 44.693 | 358 | 181 | 5 | 25 | 371 | 23 | 374 | 1.51e-105 | 320 |
| Msa0624350 | AT3G14640.2 | 44.693 | 358 | 181 | 5 | 25 | 371 | 45 | 396 | 4.31e-105 | 320 |
| Msa0624350 | AT3G14630.1 | 43.817 | 372 | 191 | 6 | 11 | 371 | 4 | 368 | 1.36e-102 | 312 |
| Msa0624350 | AT3G14630.2 | 43.817 | 372 | 191 | 6 | 11 | 371 | 59 | 423 | 5.06e-102 | 312 |
| Msa0624350 | AT2G26710.1 | 34.483 | 377 | 215 | 9 | 11 | 371 | 15 | 375 | 8.24e-69 | 225 |
| Msa0624350 | AT1G17060.1 | 35.125 | 279 | 173 | 3 | 12 | 282 | 12 | 290 | 1.39e-59 | 195 |
| Msa0624350 | AT3G14660.2 | 46.512 | 215 | 104 | 4 | 162 | 371 | 18 | 226 | 1.09e-58 | 194 |
| Msa0624350 | AT2G46960.2 | 32.877 | 365 | 219 | 10 | 24 | 371 | 21 | 376 | 6.37e-56 | 191 |
| Msa0624350 | AT4G27710.1 | 33.520 | 358 | 213 | 9 | 30 | 371 | 29 | 377 | 1.04e-53 | 185 |
| Msa0624350 | AT2G46950.2 | 33.521 | 355 | 209 | 11 | 33 | 371 | 87 | 430 | 1.18e-53 | 183 |
| Msa0624350 | AT4G27710.2 | 33.333 | 354 | 206 | 10 | 30 | 366 | 29 | 369 | 1.98e-52 | 178 |
| Msa0624350 | AT2G46950.1 | 33.239 | 355 | 210 | 11 | 33 | 371 | 87 | 430 | 5.96e-52 | 182 |
| Msa0624350 | AT1G75130.1 | 30.748 | 361 | 219 | 9 | 28 | 371 | 21 | 367 | 2.25e-47 | 168 |
| Msa0624350 | AT5G24910.2 | 29.670 | 364 | 220 | 11 | 36 | 371 | 37 | 392 | 2.36e-42 | 152 |
| Msa0624350 | AT5G24910.1 | 29.670 | 364 | 220 | 11 | 36 | 371 | 37 | 392 | 2.70e-41 | 152 |
| Msa0624350 | AT2G46960.1 | 34.016 | 244 | 143 | 6 | 137 | 371 | 26 | 260 | 7.69e-41 | 149 |
| Msa0624350 | AT5G52400.1 | 29.668 | 391 | 239 | 12 | 1 | 369 | 1 | 377 | 1.28e-39 | 147 |
| Msa0624350 | AT5G24900.1 | 26.741 | 359 | 232 | 11 | 36 | 371 | 37 | 387 | 1.73e-34 | 133 |
| Msa0624350 | AT5G38450.2 | 27.540 | 374 | 255 | 9 | 11 | 371 | 9 | 379 | 4.48e-33 | 127 |
| Msa0624350 | AT5G38450.1 | 27.493 | 371 | 253 | 9 | 11 | 368 | 9 | 376 | 4.99e-32 | 126 |
| Msa0624350 | AT1G67110.2 | 25.333 | 375 | 257 | 6 | 10 | 371 | 9 | 373 | 1.45e-30 | 120 |
| Msa0624350 | AT1G67110.1 | 25.269 | 372 | 255 | 6 | 10 | 368 | 9 | 370 | 1.14e-29 | 119 |
| Msa0624350 | AT5G24900.2 | 28.629 | 248 | 157 | 7 | 137 | 371 | 30 | 270 | 9.82e-28 | 113 |
| Msa0624350 | AT4G15110.1 | 23.906 | 297 | 186 | 7 | 104 | 371 | 124 | 409 | 2.72e-12 | 68.6 |
Find 85 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCCATCATGATTTGGATTT+TGG | 0.086543 | 4_3:-2261799 | None:intergenic |
| TAATTGCTATTATTCCTTTA+TGG | 0.092637 | 4_3:+2259528 | Msa0624350:CDS |
| CTTGCACGTTCTTGCCATTC+AGG | 0.181436 | 4_3:-2261749 | None:intergenic |
| AACACTTGTTTGATTTGTTC+AGG | 0.218844 | 4_3:-2260857 | None:intergenic |
| AATTGCTATTATTCCTTTAT+GGG | 0.243184 | 4_3:+2259529 | Msa0624350:CDS |
| CCACTGCATCTTTGTTAGTT+TGG | 0.254225 | 4_3:+2261702 | Msa0624350:CDS |
| TAAAGGAATAATAGCAATTA+TGG | 0.263666 | 4_3:-2259525 | None:intergenic |
| CACTTTCACCTGCTACCTTC+TGG | 0.273707 | 4_3:+2259492 | Msa0624350:CDS |
| TGATTTATTAGGCTTACTTA+TGG | 0.276821 | 4_3:+2261571 | Msa0624350:CDS |
| GCCATCAATGATGATTTATT+AGG | 0.288793 | 4_3:+2261560 | Msa0624350:CDS |
| GGTATCAAATGGTTTGGATT+TGG | 0.312604 | 4_3:-2259675 | None:intergenic |
| AGTTTGGACAATGGTGTTAT+TGG | 0.316922 | 4_3:+2261718 | Msa0624350:CDS |
| TGACTTAACCCATCATGATT+TGG | 0.331413 | 4_3:-2261806 | None:intergenic |
| GATTTCCCTCATCCTCTTGT+TGG | 0.346905 | 4_3:-2261468 | None:intergenic |
| TGAAAGGAACAAAGAGCTTT+TGG | 0.347634 | 4_3:+2259384 | None:intergenic |
| ATTTGATCTTATAAGGTTGC+AGG | 0.349582 | 4_3:+2261279 | Msa0624350:CDS |
| ACCACAAGGAATTCAGCTTC+TGG | 0.357033 | 4_3:-2259556 | None:intergenic |
| CATAAGGAACACAACAAGTA+TGG | 0.359877 | 4_3:+2259466 | Msa0624350:exon |
| TTTGAGTTGAACAACTTGTA+TGG | 0.373578 | 4_3:-2259632 | None:intergenic |
| GCCTAATAAATCATCATTGA+TGG | 0.373911 | 4_3:-2261561 | None:intergenic |
| TGTTTGTCTTACCATATCAT+TGG | 0.375174 | 4_3:-2261328 | None:intergenic |
| GTTGGAGGTATCAAATGGTT+TGG | 0.384202 | 4_3:-2259681 | None:intergenic |
| GGGTCCGCGATGATCACTTT+TGG | 0.384929 | 4_3:-2260836 | None:intergenic |
| CACCAAACTGTCCGAAAATA+CGG | 0.402573 | 4_3:+2259734 | Msa0624350:CDS |
| TGCAAGCAATTCTACATTGC+AGG | 0.404399 | 4_3:+2261671 | Msa0624350:CDS |
| CGTTGGATTAGTAAGTTATG+AGG | 0.413311 | 4_3:+2260937 | Msa0624350:CDS |
| CTAAGAGCACAAGGTCTTCA+AGG | 0.414544 | 4_3:+2259605 | Msa0624350:CDS |
| TCCATTTGCTAATCATATCA+TGG | 0.418520 | 4_3:-2261135 | None:intergenic |
| ATACACGCAGTCCAATGATA+TGG | 0.421677 | 4_3:+2261317 | Msa0624350:CDS |
| TGCGTGTATTAAATAGAATA+TGG | 0.423913 | 4_3:-2261303 | None:intergenic |
| GGACAATGGTGTTATTGGCT+AGG | 0.425719 | 4_3:+2261723 | Msa0624350:CDS |
| GCGATTTCTAGAACAGCATT+TGG | 0.431431 | 4_3:+2261229 | Msa0624350:CDS |
| GAGATTTATGATTTAGTCGA+GGG | 0.436844 | 4_3:+2261497 | Msa0624350:CDS |
| CCTTTCATTCAAAACTTGAC+TGG | 0.439251 | 4_3:+2261202 | Msa0624350:CDS |
| AATGGAATCGAACTTTGGTT+TGG | 0.442194 | 4_3:-2260900 | None:intergenic |
| AGCTTCTGGAAAGCCCATAA+AGG | 0.443503 | 4_3:-2259542 | None:intergenic |
| ATTGCTAAGTGTTTGTTCGT+TGG | 0.444747 | 4_3:+2260920 | Msa0624350:CDS |
| GTTCAACTCAAAGTTGAAGA+TGG | 0.446231 | 4_3:+2259643 | Msa0624350:CDS |
| ATCCTCTTGTTGGAACTTGT+AGG | 0.447907 | 4_3:-2261458 | None:intergenic |
| AATTTATCAATGTGAAATGC+AGG | 0.455594 | 4_3:-2260995 | None:intergenic |
| GATGGCTTCTCCATTGTCCA+TGG | 0.458759 | 4_3:-2261543 | None:intergenic |
| GTGGTTGAGACCAAAGAGAT+TGG | 0.463375 | 4_3:+2259574 | Msa0624350:CDS |
| ATCATATCTCTAAAGTCATA+AGG | 0.471419 | 4_3:+2259450 | Msa0624350:five_prime_UTR |
| ACACTTGTTTGATTTGTTCA+GGG | 0.486748 | 4_3:-2260856 | None:intergenic |
| AACCAAAATCCAAATCATGA+TGG | 0.488741 | 4_3:+2261797 | Msa0624350:CDS |
| TTTGGCAGCAGCTATGTAGC+AGG | 0.491976 | 4_3:+2261247 | Msa0624350:CDS |
| TTAGCAATGGAATCGAACTT+TGG | 0.494174 | 4_3:-2260905 | None:intergenic |
| TATTGGCTAGGTTTCCTGAA+TGG | 0.499274 | 4_3:+2261735 | Msa0624350:CDS |
| ACATCGTTGGAGGTATCAAA+TGG | 0.514681 | 4_3:-2259686 | None:intergenic |
| GCCATGATATGATTAGCAAA+TGG | 0.516109 | 4_3:+2261134 | Msa0624350:CDS |
| GTAAGAATCCAGAAGGTAGC+AGG | 0.519867 | 4_3:-2259500 | None:intergenic |
| CAAGTTCCAACAAGAGGATG+AGG | 0.523830 | 4_3:+2261462 | Msa0624350:CDS |
| AAGTTATGAGGGTGACGAAT+GGG | 0.526252 | 4_3:+2260949 | Msa0624350:CDS |
| GTTGGATTAGTAAGTTATGA+GGG | 0.532684 | 4_3:+2260938 | Msa0624350:CDS |
| ATTTATCAATGTGAAATGCA+GGG | 0.533762 | 4_3:-2260994 | None:intergenic |
| GATCTGTGGCGCAACATCGT+TGG | 0.535279 | 4_3:-2259699 | None:intergenic |
| CATGAAAAGAGTAAGACAGC+TGG | 0.540594 | 4_3:+2261620 | Msa0624350:CDS |
| AGAGATTTATGATTTAGTCG+AGG | 0.542148 | 4_3:+2261496 | Msa0624350:CDS |
| ACCAAAATCCAAATCATGAT+GGG | 0.542219 | 4_3:+2261798 | Msa0624350:CDS |
| TCCAGAAGCTGAATTCCTTG+TGG | 0.542304 | 4_3:+2259555 | Msa0624350:CDS |
| TCAAATAAGCTTGAAACTCA+AGG | 0.545756 | 4_3:+2261596 | Msa0624350:CDS |
| TACCTACAAGTTCCAACAAG+AGG | 0.546932 | 4_3:+2261456 | Msa0624350:CDS |
| TTTGATCTTATAAGGTTGCA+GGG | 0.550447 | 4_3:+2261280 | Msa0624350:CDS |
| TTAGAGATATGATATGATGA+TGG | 0.554767 | 4_3:-2259440 | None:intergenic |
| CGAGAGAAAGCCATGGACAA+TGG | 0.556873 | 4_3:+2261533 | Msa0624350:CDS |
| CTGTGGCGCAACATCGTTGG+AGG | 0.565671 | 4_3:-2259696 | None:intergenic |
| TTATTTACAGAATATGCTAC+CGG | 0.570816 | 4_3:+2261096 | Msa0624350:intron |
| ATCTTTGTTAGTTTGGACAA+TGG | 0.573101 | 4_3:+2261709 | Msa0624350:CDS |
| AACGAACAAACACTTAGCAA+TGG | 0.579121 | 4_3:-2260918 | None:intergenic |
| CTGAATGGCAAGAACGTGCA+AGG | 0.583115 | 4_3:+2261750 | Msa0624350:CDS |
| TGATATGATTAGCAAATGGA+AGG | 0.592903 | 4_3:+2261138 | Msa0624350:CDS |
| CCAAACTAACAAAGATGCAG+TGG | 0.595400 | 4_3:-2261702 | None:intergenic |
| TAAGTTATGAGGGTGACGAA+TGG | 0.597722 | 4_3:+2260948 | Msa0624350:CDS |
| TGGCTGCTTTGAATAAATGC+CGG | 0.607297 | 4_3:-2261115 | None:intergenic |
| AATCATGTGAGATTGATGTC+CGG | 0.615391 | 4_3:+2261179 | Msa0624350:CDS |
| ATGATGGAGAAGACGTATTG+TGG | 0.624640 | 4_3:-2259424 | None:intergenic |
| TATGGCTGTAAGAATCCAGA+AGG | 0.633724 | 4_3:-2259507 | None:intergenic |
| TTGGCAGCAGCTATGTAGCA+GGG | 0.636138 | 4_3:+2261248 | Msa0624350:CDS |
| AAGTTCCAACAAGAGGATGA+GGG | 0.636816 | 4_3:+2261463 | Msa0624350:CDS |
| GAAAAGCTTCTAAGAGCACA+AGG | 0.638368 | 4_3:+2259596 | Msa0624350:CDS |
| TAAAATACGAGAGAAAGCCA+TGG | 0.657399 | 4_3:+2261526 | Msa0624350:CDS |
| TCTCTTTGGTCTCAACCACA+AGG | 0.666477 | 4_3:-2259570 | None:intergenic |
| AAGGAACACAACAAGTATGG+AGG | 0.684445 | 4_3:+2259469 | Msa0624350:exon |
| TGTACGAATGAAAAGATCTG+TGG | 0.746082 | 4_3:-2259713 | None:intergenic |
| AATACCAAAAGTGATCATCG+CGG | 0.799523 | 4_3:+2260832 | Msa0624350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACATATTTTTTTTTTTGA+AGG | - | chr4_3:2259889-2259908 | None:intergenic | 10.0% |
| !!! | ATAAATATATACCGTATTTT+CGG | - | chr4_3:2259748-2259767 | None:intergenic | 15.0% |
| !! | AAAATACGGTATATATTTAT+AGG | + | chr4_3:2259748-2259767 | Msa0624350:intron | 15.0% |
| !!! | ATGTTAACTTTTTTGTTTTT+TGG | + | chr4_3:2259838-2259857 | Msa0624350:intron | 15.0% |
| !!! | TGTTAACTTTTTTGTTTTTT+GGG | + | chr4_3:2259839-2259858 | Msa0624350:intron | 15.0% |
| !!! | TAAACAAATATTTTTACAGA+AGG | - | chr4_3:2259941-2259960 | None:intergenic | 15.0% |
| !!! | ATTTGAAGATTTTTTGATTT+TGG | + | chr4_3:2259976-2259995 | Msa0624350:intron | 15.0% |
| !!! | AATTTGAAATTTTTTGGTTT+TGG | - | chr4_3:2260148-2260167 | None:intergenic | 15.0% |
| !!! | ATCTAAACAATTTTTTTTAC+AGG | + | chr4_3:2260179-2260198 | Msa0624350:intron | 15.0% |
| !!! | TCTAAACAATTTTTTTTACA+GGG | + | chr4_3:2260180-2260199 | Msa0624350:intron | 15.0% |
| !! | TTTGCTTATAAAAAAACTAT+GGG | - | chr4_3:2260249-2260268 | None:intergenic | 15.0% |
| !! | ATTTGCTTATAAAAAAACTA+TGG | - | chr4_3:2260250-2260269 | None:intergenic | 15.0% |
| !!! | TCACATAAATTTTATAGAAT+TGG | - | chr4_3:2260443-2260462 | None:intergenic | 15.0% |
| !! | CAAAAATATTTGATCTTATA+AGG | + | chr4_3:2261272-2261291 | Msa0624350:CDS | 15.0% |
| !! | TAAATAATGATGACTAAATT+TGG | - | chr4_3:2261966-2261985 | None:intergenic | 15.0% |
| !!! | TTTTAAGAAAGTTTTTTGTT+GGG | + | chr4_3:2262177-2262196 | Msa0624350:intron | 15.0% |
| !!! | TCAAAAGTTGATATATTTAT+AGG | + | chr4_3:2262205-2262224 | Msa0624350:intron | 15.0% |
| !! | TAAAGGAATAATAGCAATTA+TGG | - | chr4_3:2259528-2259547 | None:intergenic | 20.0% |
| !!! | TAATTGCTATTATTCCTTTA+TGG | + | chr4_3:2259528-2259547 | Msa0624350:CDS | 20.0% |
| !!! | AATTGCTATTATTCCTTTAT+GGG | + | chr4_3:2259529-2259548 | Msa0624350:CDS | 20.0% |
| !! | AAAATATTGTCTTCAAGTAA+AGG | - | chr4_3:2259800-2259819 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGAAGGATTACAA+GGG | - | chr4_3:2259879-2259898 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGAAGGATTACA+AGG | - | chr4_3:2259880-2259899 | None:intergenic | 20.0% |
| !! | CAAAAAATCTTCAAATTACA+GGG | - | chr4_3:2259972-2259991 | None:intergenic | 20.0% |
| !! | TCAAAAAATCTTCAAATTAC+AGG | - | chr4_3:2259973-2259992 | None:intergenic | 20.0% |
| !! | AAACCGAAATATTAATGATA+TGG | - | chr4_3:2260079-2260098 | None:intergenic | 20.0% |
| !!! | CCATGTAATTTGAAATTTTT+TGG | - | chr4_3:2260154-2260173 | None:intergenic | 20.0% |
| !! | CCAAAAAATTTCAAATTACA+TGG | + | chr4_3:2260151-2260170 | Msa0624350:intron | 20.0% |
| !! | AAAATTTCAAATTACATGGT+TGG | + | chr4_3:2260155-2260174 | Msa0624350:intron | 20.0% |
| !!! | ATTTTTTTTACAGGGTAAAT+CGG | + | chr4_3:2260188-2260207 | Msa0624350:intron | 20.0% |
| !!! | TTTTCTATCACTAAATCTAA+TGG | + | chr4_3:2260389-2260408 | Msa0624350:intron | 20.0% |
| !!! | AGTTTTGTTTGAGAAATTTT+AGG | - | chr4_3:2260705-2260724 | None:intergenic | 20.0% |
| !! | TAGTCATCATTATTTAACAA+TGG | + | chr4_3:2261970-2261989 | Msa0624350:intron | 20.0% |
| !! | ATGTTTATCGTAAATATACA+TGG | - | chr4_3:2262113-2262132 | None:intergenic | 20.0% |
| !! | AAAAAGCGAGAAATATTTAT+AGG | + | chr4_3:2262147-2262166 | Msa0624350:intron | 20.0% |
| !!! | GTTTTAAGAAAGTTTTTTGT+TGG | + | chr4_3:2262176-2262195 | Msa0624350:intron | 20.0% |
| ! | TTAGAGATATGATATGATGA+TGG | - | chr4_3:2259443-2259462 | None:intergenic | 25.0% |
| !!! | ATCATATCTCTAAAGTCATA+AGG | + | chr4_3:2259450-2259469 | Msa0624350:five_prime_UTR | 25.0% |
| ! | AGAAATCGCTAATATTACAA+GGG | - | chr4_3:2259912-2259931 | None:intergenic | 25.0% |
| ! | TAGAAATCGCTAATATTACA+AGG | - | chr4_3:2259913-2259932 | None:intergenic | 25.0% |
| ! | TTTGTAATTTGATGTCATGA+AGG | - | chr4_3:2260003-2260022 | None:intergenic | 25.0% |
| ! | TGAAATTCTCTCAAATTACA+AGG | - | chr4_3:2260044-2260063 | None:intergenic | 25.0% |
| ! | GAAATATTAATGATATGGCA+GGG | - | chr4_3:2260074-2260093 | None:intergenic | 25.0% |
| ! | CTGCCATATCATTAATATTT+CGG | + | chr4_3:2260073-2260092 | Msa0624350:intron | 25.0% |
| !!! | TACTTCATGTTGATTTGATA+TGG | - | chr4_3:2260623-2260642 | None:intergenic | 25.0% |
| !! | AACTATCTAGAATGATACTA+TGG | + | chr4_3:2260721-2260740 | Msa0624350:intron | 25.0% |
| !! | ACTATCTAGAATGATACTAT+GGG | + | chr4_3:2260722-2260741 | Msa0624350:intron | 25.0% |
| ! | CTAATGAATAATTGATGTGT+AGG | + | chr4_3:2260782-2260801 | Msa0624350:intron | 25.0% |
| ! | ATTTATCAATGTGAAATGCA+GGG | - | chr4_3:2260997-2261016 | None:intergenic | 25.0% |
| ! | AATTTATCAATGTGAAATGC+AGG | - | chr4_3:2260998-2261017 | None:intergenic | 25.0% |
| ! | ACATTGATAAATTGAGAGTA+AGG | + | chr4_3:2261005-2261024 | Msa0624350:intron | 25.0% |
| ! | GCATATTCTGTAAATAAGTT+AGG | - | chr4_3:2261093-2261112 | None:intergenic | 25.0% |
| ! | TTATTTACAGAATATGCTAC+CGG | + | chr4_3:2261096-2261115 | Msa0624350:intron | 25.0% |
| ! | TGCGTGTATTAAATAGAATA+TGG | - | chr4_3:2261306-2261325 | None:intergenic | 25.0% |
| ! | CAGGTGATGTTAATTATTTA+GGG | - | chr4_3:2261412-2261431 | None:intergenic | 25.0% |
| ! | TCAGGTGATGTTAATTATTT+AGG | - | chr4_3:2261413-2261432 | None:intergenic | 25.0% |
| ! | CTAGAAACACATTATATATC+AGG | - | chr4_3:2261431-2261450 | None:intergenic | 25.0% |
| ! | CTGATATATAATGTGTTTCT+AGG | + | chr4_3:2261429-2261448 | Msa0624350:intron | 25.0% |
| ! | TGATTTATTAGGCTTACTTA+TGG | + | chr4_3:2261571-2261590 | Msa0624350:CDS | 25.0% |
| ! | ATGATGACTAAATTTGGTAA+CGG | - | chr4_3:2261960-2261979 | None:intergenic | 25.0% |
| !!! | GAGACCTTTAAGATATATTA+AGG | + | chr4_3:2262040-2262059 | Msa0624350:intron | 25.0% |
| ! | GAGACCTTAATATATCTTAA+AGG | - | chr4_3:2262047-2262066 | None:intergenic | 25.0% |
| !! | TTTGAGTTGAACAACTTGTA+TGG | - | chr4_3:2259635-2259654 | None:intergenic | 30.0% |
| CGAAATATTAATGATATGGC+AGG | - | chr4_3:2260075-2260094 | None:intergenic | 30.0% | |
| TACAAAATCGATGATATGAC+GGG | - | chr4_3:2260105-2260124 | None:intergenic | 30.0% | |
| GTACAAAATCGATGATATGA+CGG | - | chr4_3:2260106-2260125 | None:intergenic | 30.0% | |
| TTGACAAAAATGCTAAACCT+AGG | + | chr4_3:2260488-2260507 | Msa0624350:intron | 30.0% | |
| !! | TTCATGTTGATTTGATATGG+TGG | - | chr4_3:2260620-2260639 | None:intergenic | 30.0% |
| !!! | TTTGAGAAATTTTAGGACAG+TGG | - | chr4_3:2260698-2260717 | None:intergenic | 30.0% |
| TATTCATTAGCAATCATCGT+TGG | - | chr4_3:2260772-2260791 | None:intergenic | 30.0% | |
| !! | TAGGCAAGAGTTCATTTTTA+TGG | + | chr4_3:2260801-2260820 | Msa0624350:intron | 30.0% |
| !! | AGGCAAGAGTTCATTTTTAT+GGG | + | chr4_3:2260802-2260821 | Msa0624350:intron | 30.0% |
| !! | AAGAGTTCATTTTTATGGGA+AGG | + | chr4_3:2260806-2260825 | Msa0624350:CDS | 30.0% |
| !! | ACACTTGTTTGATTTGTTCA+GGG | - | chr4_3:2260859-2260878 | None:intergenic | 30.0% |
| !! | AACACTTGTTTGATTTGTTC+AGG | - | chr4_3:2260860-2260879 | None:intergenic | 30.0% |
| !! | GTTGGATTAGTAAGTTATGA+GGG | + | chr4_3:2260938-2260957 | Msa0624350:CDS | 30.0% |
| ! | TCCATTTGCTAATCATATCA+TGG | - | chr4_3:2261138-2261157 | None:intergenic | 30.0% |
| TGATATGATTAGCAAATGGA+AGG | + | chr4_3:2261138-2261157 | Msa0624350:CDS | 30.0% | |
| ATTTGATCTTATAAGGTTGC+AGG | + | chr4_3:2261279-2261298 | Msa0624350:CDS | 30.0% | |
| TTTGATCTTATAAGGTTGCA+GGG | + | chr4_3:2261280-2261299 | Msa0624350:CDS | 30.0% | |
| TGTTTGTCTTACCATATCAT+TGG | - | chr4_3:2261331-2261350 | None:intergenic | 30.0% | |
| AGAGATTTATGATTTAGTCG+AGG | + | chr4_3:2261496-2261515 | Msa0624350:CDS | 30.0% | |
| GAGATTTATGATTTAGTCGA+GGG | + | chr4_3:2261497-2261516 | Msa0624350:CDS | 30.0% | |
| GCCATCAATGATGATTTATT+AGG | + | chr4_3:2261560-2261579 | Msa0624350:CDS | 30.0% | |
| GCCTAATAAATCATCATTGA+TGG | - | chr4_3:2261564-2261583 | None:intergenic | 30.0% | |
| TCAAATAAGCTTGAAACTCA+AGG | + | chr4_3:2261596-2261615 | Msa0624350:CDS | 30.0% | |
| ! | ATCTTTGTTAGTTTGGACAA+TGG | + | chr4_3:2261709-2261728 | Msa0624350:CDS | 30.0% |
| ! | CAAGAAGTTTTGCAAGTTTT+TGG | + | chr4_3:2261773-2261792 | Msa0624350:CDS | 30.0% |
| AACCAAAATCCAAATCATGA+TGG | + | chr4_3:2261797-2261816 | Msa0624350:CDS | 30.0% | |
| ACCAAAATCCAAATCATGAT+GGG | + | chr4_3:2261798-2261817 | Msa0624350:CDS | 30.0% | |
| ATGTCATAAAAAAAGTCACG+TGG | - | chr4_3:2262014-2262033 | None:intergenic | 30.0% | |
| !!! | ACGTGACTTTTTTTATGACA+TGG | + | chr4_3:2262013-2262032 | Msa0624350:intron | 30.0% |
| ATATATTAAGGTCTCCACAA+TGG | + | chr4_3:2262052-2262071 | Msa0624350:intron | 30.0% | |
| ! | ACAAAGAGCTTTTGGTGAAA+TGG | + | chr4_3:2259392-2259411 | Msa0624350:five_prime_UTR | 35.0% |
| CATAAGGAACACAACAAGTA+TGG | + | chr4_3:2259466-2259485 | Msa0624350:exon | 35.0% | |
| ! | AGAAGCTTTTCCAATCTCTT+TGG | - | chr4_3:2259587-2259606 | None:intergenic | 35.0% |
| GTTCAACTCAAAGTTGAAGA+TGG | + | chr4_3:2259643-2259662 | Msa0624350:CDS | 35.0% | |
| ! | GGTATCAAATGGTTTGGATT+TGG | - | chr4_3:2259678-2259697 | None:intergenic | 35.0% |
| TGTACGAATGAAAAGATCTG+TGG | - | chr4_3:2259716-2259735 | None:intergenic | 35.0% | |
| !! | GCATATGTTGTTTCGAATCT+AGG | + | chr4_3:2259770-2259789 | Msa0624350:intron | 35.0% |
| ACAAAATCGATGATATGACG+GGG | - | chr4_3:2260104-2260123 | None:intergenic | 35.0% | |
| TGTACAGTCAAAACTCATGA+AGG | + | chr4_3:2260121-2260140 | Msa0624350:intron | 35.0% | |
| TCGGAATTCGCTAATATTAG+AGG | + | chr4_3:2260207-2260226 | Msa0624350:intron | 35.0% | |
| CGGAATTCGCTAATATTAGA+GGG | + | chr4_3:2260208-2260227 | Msa0624350:intron | 35.0% | |
| GGAATTCGCTAATATTAGAG+GGG | + | chr4_3:2260209-2260228 | Msa0624350:intron | 35.0% | |
| AAAATGCTAACACGTCATTC+GGG | - | chr4_3:2260317-2260336 | None:intergenic | 35.0% | |
| CAAAATGCTAACACGTCATT+CGG | - | chr4_3:2260318-2260337 | None:intergenic | 35.0% | |
| ! | AATGACGTGTTAGCATTTTG+TGG | + | chr4_3:2260318-2260337 | Msa0624350:intron | 35.0% |
| TTGTTAGACACAATCATCGT+TGG | - | chr4_3:2260647-2260666 | None:intergenic | 35.0% | |
| CTAGAATGATACTATGGGTT+TGG | + | chr4_3:2260727-2260746 | Msa0624350:intron | 35.0% | |
| AATACCAAAAGTGATCATCG+CGG | + | chr4_3:2260832-2260851 | Msa0624350:CDS | 35.0% | |
| AATGGAATCGAACTTTGGTT+TGG | - | chr4_3:2260903-2260922 | None:intergenic | 35.0% | |
| TTAGCAATGGAATCGAACTT+TGG | - | chr4_3:2260908-2260927 | None:intergenic | 35.0% | |
| AACGAACAAACACTTAGCAA+TGG | - | chr4_3:2260921-2260940 | None:intergenic | 35.0% | |
| ATTGCTAAGTGTTTGTTCGT+TGG | + | chr4_3:2260920-2260939 | Msa0624350:CDS | 35.0% | |
| !! | CGTTGGATTAGTAAGTTATG+AGG | + | chr4_3:2260937-2260956 | Msa0624350:CDS | 35.0% |
| GCCATGATATGATTAGCAAA+TGG | + | chr4_3:2261134-2261153 | Msa0624350:CDS | 35.0% | |
| AATCATGTGAGATTGATGTC+CGG | + | chr4_3:2261179-2261198 | Msa0624350:CDS | 35.0% | |
| !!! | TCAAGTTTTGAATGAAAGGC+CGG | - | chr4_3:2261201-2261220 | None:intergenic | 35.0% |
| !!! | CCAGTCAAGTTTTGAATGAA+AGG | - | chr4_3:2261205-2261224 | None:intergenic | 35.0% |
| CCTTTCATTCAAAACTTGAC+TGG | + | chr4_3:2261202-2261221 | Msa0624350:CDS | 35.0% | |
| GATATGGTAAGACAAACATG+TGG | + | chr4_3:2261333-2261352 | Msa0624350:intron | 35.0% | |
| ! | GTAAGACAAACATGTGGTTT+TGG | + | chr4_3:2261339-2261358 | Msa0624350:intron | 35.0% |
| TAAAATACGAGAGAAAGCCA+TGG | + | chr4_3:2261526-2261545 | Msa0624350:CDS | 35.0% | |
| !! | AGTTTGGACAATGGTGTTAT+TGG | + | chr4_3:2261718-2261737 | Msa0624350:CDS | 35.0% |
| !! | ACCCATCATGATTTGGATTT+TGG | - | chr4_3:2261802-2261821 | None:intergenic | 35.0% |
| TGACTTAACCCATCATGATT+TGG | - | chr4_3:2261809-2261828 | None:intergenic | 35.0% | |
| ATGTGAGGATGAAAGTTTGA+TGG | - | chr4_3:2261932-2261951 | None:intergenic | 35.0% | |
| !! | TTGGTAACGGAAAATATGTG+AGG | - | chr4_3:2261947-2261966 | None:intergenic | 35.0% |
| ! | TTGTTGATATTGTGCCATTG+TGG | - | chr4_3:2262069-2262088 | None:intergenic | 35.0% |
| ATCAACAAAAAAAAGCCACG+TGG | + | chr4_3:2262081-2262100 | Msa0624350:intron | 35.0% | |
| ! | ATGATGGAGAAGACGTATTG+TGG | - | chr4_3:2259427-2259446 | None:intergenic | 40.0% |
| AAGGAACACAACAAGTATGG+AGG | + | chr4_3:2259469-2259488 | Msa0624350:exon | 40.0% | |
| TATGGCTGTAAGAATCCAGA+AGG | - | chr4_3:2259510-2259529 | None:intergenic | 40.0% | |
| ! | GAAAAGCTTCTAAGAGCACA+AGG | + | chr4_3:2259596-2259615 | Msa0624350:CDS | 40.0% |
| !! | GTTGGAGGTATCAAATGGTT+TGG | - | chr4_3:2259684-2259703 | None:intergenic | 40.0% |
| !! | ACATCGTTGGAGGTATCAAA+TGG | - | chr4_3:2259689-2259708 | None:intergenic | 40.0% |
| CACCAAACTGTCCGAAAATA+CGG | + | chr4_3:2259734-2259753 | Msa0624350:CDS | 40.0% | |
| ! | TACCGTATTTTCGGACAGTT+TGG | - | chr4_3:2259739-2259758 | None:intergenic | 40.0% |
| CAAAATCGATGATATGACGG+GGG | - | chr4_3:2260103-2260122 | None:intergenic | 40.0% | |
| ! | CGTGTTAGCATTTTGTGGTA+CGG | + | chr4_3:2260323-2260342 | Msa0624350:intron | 40.0% |
| ! | TTAGCATTTTGTGGTACGGA+TGG | + | chr4_3:2260327-2260346 | Msa0624350:intron | 40.0% |
| GATCCTCTACATCAATTGCA+CGG | - | chr4_3:2260421-2260440 | None:intergenic | 40.0% | |
| AAATGCTAAACCTAGGAGTC+TGG | + | chr4_3:2260495-2260514 | Msa0624350:intron | 40.0% | |
| TAAGTTATGAGGGTGACGAA+TGG | + | chr4_3:2260948-2260967 | Msa0624350:CDS | 40.0% | |
| AAGTTATGAGGGTGACGAAT+GGG | + | chr4_3:2260949-2260968 | Msa0624350:CDS | 40.0% | |
| ! | TGGCTGCTTTGAATAAATGC+CGG | - | chr4_3:2261118-2261137 | None:intergenic | 40.0% |
| !! | GCGATTTCTAGAACAGCATT+TGG | + | chr4_3:2261229-2261248 | Msa0624350:CDS | 40.0% |
| ATACACGCAGTCCAATGATA+TGG | + | chr4_3:2261317-2261336 | Msa0624350:CDS | 40.0% | |
| TACCTACAAGTTCCAACAAG+AGG | + | chr4_3:2261456-2261475 | Msa0624350:CDS | 40.0% | |
| ATCCTCTTGTTGGAACTTGT+AGG | - | chr4_3:2261461-2261480 | None:intergenic | 40.0% | |
| AAGTTCCAACAAGAGGATGA+GGG | + | chr4_3:2261463-2261482 | Msa0624350:CDS | 40.0% | |
| CATGAAAAGAGTAAGACAGC+TGG | + | chr4_3:2261620-2261639 | Msa0624350:CDS | 40.0% | |
| TGCAAGCAATTCTACATTGC+AGG | + | chr4_3:2261671-2261690 | Msa0624350:CDS | 40.0% | |
| CCAAACTAACAAAGATGCAG+TGG | - | chr4_3:2261705-2261724 | None:intergenic | 40.0% | |
| CCACTGCATCTTTGTTAGTT+TGG | + | chr4_3:2261702-2261721 | Msa0624350:CDS | 40.0% | |
| ! | TATTGGCTAGGTTTCCTGAA+TGG | + | chr4_3:2261735-2261754 | Msa0624350:CDS | 40.0% |
| TATACATGGTAAGTACCACG+TGG | - | chr4_3:2262099-2262118 | None:intergenic | 40.0% | |
| GTAAGAATCCAGAAGGTAGC+AGG | - | chr4_3:2259503-2259522 | None:intergenic | 45.0% | |
| ! | AGCTTCTGGAAAGCCCATAA+AGG | - | chr4_3:2259545-2259564 | None:intergenic | 45.0% |
| TCCAGAAGCTGAATTCCTTG+TGG | + | chr4_3:2259555-2259574 | Msa0624350:CDS | 45.0% | |
| ACCACAAGGAATTCAGCTTC+TGG | - | chr4_3:2259559-2259578 | None:intergenic | 45.0% | |
| TCTCTTTGGTCTCAACCACA+AGG | - | chr4_3:2259573-2259592 | None:intergenic | 45.0% | |
| GTGGTTGAGACCAAAGAGAT+TGG | + | chr4_3:2259574-2259593 | Msa0624350:CDS | 45.0% | |
| ! | CTAAGAGCACAAGGTCTTCA+AGG | + | chr4_3:2259605-2259624 | Msa0624350:CDS | 45.0% |
| TAACACGTCATTCGGGAAAC+TGG | - | chr4_3:2260310-2260329 | None:intergenic | 45.0% | |
| TTGCCGTGCAATTGATGTAG+AGG | + | chr4_3:2260415-2260434 | Msa0624350:intron | 45.0% | |
| GTTTCGAAATCCAGACTCCT+AGG | - | chr4_3:2260508-2260527 | None:intergenic | 45.0% | |
| GGAGTCTGGATTTCGAAACA+AGG | + | chr4_3:2260509-2260528 | Msa0624350:intron | 45.0% | |
| GACTTTCAAGCAACCACACT+TGG | + | chr4_3:2260531-2260550 | Msa0624350:intron | 45.0% | |
| GCAACTAGACGAACATGACA+TGG | + | chr4_3:2260553-2260572 | Msa0624350:intron | 45.0% | |
| CTAGACGAACATGACATGGT+TGG | + | chr4_3:2260557-2260576 | Msa0624350:intron | 45.0% | |
| ! | AGTGGTTTGCAACTCTTTCG+AGG | - | chr4_3:2260680-2260699 | None:intergenic | 45.0% |
| CAAGTTCCAACAAGAGGATG+AGG | + | chr4_3:2261462-2261481 | Msa0624350:CDS | 45.0% | |
| GATTTCCCTCATCCTCTTGT+TGG | - | chr4_3:2261471-2261490 | None:intergenic | 45.0% | |
| !! | GGACAATGGTGTTATTGGCT+AGG | + | chr4_3:2261723-2261742 | Msa0624350:CDS | 45.0% |
| CACTTTCACCTGCTACCTTC+TGG | + | chr4_3:2259492-2259511 | Msa0624350:CDS | 50.0% | |
| ATTCGGGAAACTGGTCGTGA+AGG | - | chr4_3:2260301-2260320 | None:intergenic | 50.0% | |
| GTTCGTCTAGTTGCCAAGTG+TGG | - | chr4_3:2260547-2260566 | None:intergenic | 50.0% | |
| TTTGGCAGCAGCTATGTAGC+AGG | + | chr4_3:2261247-2261266 | Msa0624350:CDS | 50.0% | |
| TTGGCAGCAGCTATGTAGCA+GGG | + | chr4_3:2261248-2261267 | Msa0624350:CDS | 50.0% | |
| CGAGAGAAAGCCATGGACAA+TGG | + | chr4_3:2261533-2261552 | Msa0624350:CDS | 50.0% | |
| GATGGCTTCTCCATTGTCCA+TGG | - | chr4_3:2261546-2261565 | None:intergenic | 50.0% | |
| CTTGCACGTTCTTGCCATTC+AGG | - | chr4_3:2261752-2261771 | None:intergenic | 50.0% | |
| CTGAATGGCAAGAACGTGCA+AGG | + | chr4_3:2261750-2261769 | Msa0624350:CDS | 50.0% | |
| GATCTGTGGCGCAACATCGT+TGG | - | chr4_3:2259702-2259721 | None:intergenic | 55.0% | |
| ! | GGGTCCGCGATGATCACTTT+TGG | - | chr4_3:2260839-2260858 | None:intergenic | 55.0% |
| CTGTGGCGCAACATCGTTGG+AGG | - | chr4_3:2259699-2259718 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 2259391 | 2262232 | 2259391 | ID=Msa0624350;Name=Msa0624350 |
| chr4_3 | mRNA | 2259391 | 2262232 | 2259391 | ID=Msa0624350-mRNA-1;Parent=Msa0624350;Name=Msa0624350-mRNA-1;_AED=0.12;_eAED=0.12;_QI=94|0.75|0.6|0.8|1|1|5|0|371 |
| chr4_3 | exon | 2259391 | 2259755 | 2259391 | ID=Msa0624350-mRNA-1:exon:553;Parent=Msa0624350-mRNA-1 |
| chr4_3 | exon | 2260804 | 2261021 | 2260804 | ID=Msa0624350-mRNA-1:exon:554;Parent=Msa0624350-mRNA-1 |
| chr4_3 | exon | 2261106 | 2261338 | 2261106 | ID=Msa0624350-mRNA-1:exon:555;Parent=Msa0624350-mRNA-1 |
| chr4_3 | exon | 2261451 | 2261838 | 2261451 | ID=Msa0624350-mRNA-1:exon:556;Parent=Msa0624350-mRNA-1 |
| chr4_3 | exon | 2262227 | 2262232 | 2262227 | ID=Msa0624350-mRNA-1:exon:557;Parent=Msa0624350-mRNA-1 |
| chr4_3 | five_prime_UTR | 2259391 | 2259484 | 2259391 | ID=Msa0624350-mRNA-1:five_prime_utr;Parent=Msa0624350-mRNA-1 |
| chr4_3 | CDS | 2259485 | 2259755 | 2259485 | ID=Msa0624350-mRNA-1:cds;Parent=Msa0624350-mRNA-1 |
| chr4_3 | CDS | 2260804 | 2261021 | 2260804 | ID=Msa0624350-mRNA-1:cds;Parent=Msa0624350-mRNA-1 |
| chr4_3 | CDS | 2261106 | 2261338 | 2261106 | ID=Msa0624350-mRNA-1:cds;Parent=Msa0624350-mRNA-1 |
| chr4_3 | CDS | 2261451 | 2261838 | 2261451 | ID=Msa0624350-mRNA-1:cds;Parent=Msa0624350-mRNA-1 |
| chr4_3 | CDS | 2262227 | 2262232 | 2262227 | ID=Msa0624350-mRNA-1:cds;Parent=Msa0624350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
