Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626290 | XP_013454579.1 | 94.466 | 253 | 4 | 1 | 1 | 253 | 1 | 243 | 2.16e-170 | 479 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626290 | sp|Q9LHP1|RL74_ARATH | 81.600 | 250 | 36 | 1 | 4 | 253 | 5 | 244 | 5.46e-151 | 423 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0222730 | Msa0626290 | 0.800414 | 1.457608e-48 | -8.615850e-47 |
| Msa0264010 | Msa0626290 | 0.808179 | 3.517463e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626290 | MtrunA17_Chr4g0002321 | 94.466 | 253 | 4 | 1 | 1 | 253 | 1 | 243 | 1.99e-174 | 479 |
| Msa0626290 | MtrunA17_Chr1g0155331 | 84.064 | 251 | 30 | 1 | 3 | 253 | 4 | 244 | 3.03e-156 | 434 |
| Msa0626290 | MtrunA17_Chr2g0298841 | 83.267 | 251 | 32 | 1 | 3 | 253 | 4 | 244 | 2.08e-154 | 429 |
| Msa0626290 | MtrunA17_Chr7g0237701 | 44.898 | 245 | 124 | 2 | 9 | 253 | 13 | 246 | 1.12e-70 | 217 |
| Msa0626290 | MtrunA17_Chr1g0155311 | 93.333 | 60 | 4 | 0 | 184 | 243 | 3 | 62 | 2.44e-36 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626290 | AT3G13580.5 | 81.600 | 250 | 36 | 1 | 4 | 253 | 5 | 244 | 5.55e-152 | 423 |
| Msa0626290 | AT3G13580.4 | 81.600 | 250 | 36 | 1 | 4 | 253 | 5 | 244 | 5.55e-152 | 423 |
| Msa0626290 | AT3G13580.2 | 81.600 | 250 | 36 | 1 | 4 | 253 | 5 | 244 | 5.55e-152 | 423 |
| Msa0626290 | AT3G13580.3 | 81.600 | 250 | 36 | 1 | 4 | 253 | 5 | 244 | 5.55e-152 | 423 |
| Msa0626290 | AT3G13580.1 | 81.600 | 250 | 36 | 1 | 4 | 253 | 5 | 244 | 5.55e-152 | 423 |
| Msa0626290 | AT3G13580.7 | 81.600 | 250 | 36 | 1 | 4 | 253 | 5 | 244 | 5.55e-152 | 423 |
| Msa0626290 | AT3G13580.8 | 81.600 | 250 | 36 | 1 | 4 | 253 | 5 | 244 | 5.55e-152 | 423 |
| Msa0626290 | AT3G13580.6 | 81.600 | 250 | 36 | 1 | 4 | 253 | 5 | 244 | 5.55e-152 | 423 |
| Msa0626290 | AT3G13580.9 | 81.600 | 250 | 36 | 1 | 4 | 253 | 5 | 244 | 5.55e-152 | 423 |
| Msa0626290 | AT2G01250.1 | 82.400 | 250 | 34 | 1 | 4 | 253 | 3 | 242 | 7.09e-150 | 418 |
| Msa0626290 | AT2G44120.1 | 78.800 | 250 | 43 | 1 | 4 | 253 | 3 | 242 | 3.14e-144 | 404 |
| Msa0626290 | AT2G44120.2 | 78.800 | 250 | 43 | 1 | 4 | 253 | 8 | 247 | 3.97e-144 | 404 |
| Msa0626290 | AT2G01250.2 | 76.216 | 185 | 34 | 1 | 4 | 188 | 3 | 177 | 1.27e-94 | 276 |
| Msa0626290 | AT1G80750.1 | 40.945 | 254 | 137 | 3 | 3 | 253 | 4 | 247 | 1.03e-57 | 184 |
Find 71 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTGCTTTGTTAACTTTA+AGG | 0.072962 | 4_3:-5683326 | None:intergenic |
| TCTCTTACACTCTTCAAATT+TGG | 0.100589 | 4_3:-5683476 | None:intergenic |
| CATTTGAGCATCTGAAATTT+TGG | 0.148320 | 4_3:+5683944 | Msa0626290:three_prime_UTR |
| GTTGAGCCTTATGTTACTTA+TGG | 0.229078 | 4_3:+5683366 | Msa0626290:CDS |
| AAATAGTTGTAAGATCTTTC+TGG | 0.235790 | 4_3:-5683090 | None:intergenic |
| TGTAAGATCTTTCTGGTCTT+GGG | 0.274362 | 4_3:-5683083 | None:intergenic |
| CTCTTACACTCTTCAAATTT+GGG | 0.282218 | 4_3:-5683475 | None:intergenic |
| TTGTAAGATCTTTCTGGTCT+TGG | 0.295588 | 4_3:-5683084 | None:intergenic |
| ATTACATCAATGAGCTCATT+AGG | 0.339642 | 4_3:+5683845 | Msa0626290:CDS |
| TTGAGCCTTATGTTACTTAT+GGG | 0.355143 | 4_3:+5683367 | Msa0626290:CDS |
| TTCTTCTTTAAGCCACCTAA+TGG | 0.361320 | 4_3:-5683778 | None:intergenic |
| CTGTGTTGAAGAAGCAGAAC+AGG | 0.363263 | 4_3:+5681822 | Msa0626290:CDS |
| AGGAAGCAAACAACTTCCTT+TGG | 0.396409 | 4_3:+5683737 | Msa0626290:CDS |
| CTTTCTGGTCTTGGGGTCCA+TGG | 0.403447 | 4_3:-5683075 | None:intergenic |
| GACTGTTGGACCACATTTCA+AGG | 0.408463 | 4_3:+5683717 | Msa0626290:CDS |
| TTTGATGACCCTCAGGGACT+TGG | 0.425158 | 4_3:+5683649 | Msa0626290:intron |
| CTCATTTACAAACGTGGGTA+TGG | 0.433954 | 4_3:+5683500 | Msa0626290:CDS |
| GAGAACCGTAAGCTGATCTA+TGG | 0.446007 | 4_3:+5681905 | Msa0626290:CDS |
| AATGGAGCCTTGAGCTTGAA+TGG | 0.452879 | 4_3:-5683760 | None:intergenic |
| TTCTCAAGAGTATGAGGATA+AGG | 0.453623 | 4_3:+5681943 | Msa0626290:CDS |
| TATGTTGAAGGCGGTGATGC+TGG | 0.455644 | 4_3:+5683811 | Msa0626290:CDS |
| GGAAGGTTTGTGAATAAGTA+GGG | 0.456126 | 4_3:-5681505 | None:intergenic |
| CAGGGAAGAACAATGGGCTT+TGG | 0.464957 | 4_3:+5681841 | Msa0626290:CDS |
| ACCGTAAGCTGATCTATGGC+AGG | 0.465539 | 4_3:+5681909 | Msa0626290:CDS |
| GGGAAGGTTTGTGAATAAGT+AGG | 0.474859 | 4_3:-5681506 | None:intergenic |
| ATAAACAAGAGCTTGGCCTC+TGG | 0.475047 | 4_3:-5682157 | None:intergenic |
| AATGACTCTGCAGGTGCAAA+GGG | 0.483245 | 4_3:-5681539 | None:intergenic |
| TTCAAGCTCAAGGCTCCATT+AGG | 0.488861 | 4_3:+5683763 | Msa0626290:CDS |
| GCAGAACAGGGAAGAACAAT+GGG | 0.492072 | 4_3:+5681835 | Msa0626290:CDS |
| ACAACTATTTCGATTGAGAC+AGG | 0.493105 | 4_3:+5683103 | Msa0626290:CDS |
| CCTTTGGCCATTCAAGCTCA+AGG | 0.494583 | 4_3:+5683753 | Msa0626290:CDS |
| TGCTTCTTCAACACAGACTC+AGG | 0.496291 | 4_3:-5681815 | None:intergenic |
| GCGAATAATAAACAAGAGCT+TGG | 0.498068 | 4_3:-5682164 | None:intergenic |
| ACAGTATTCTCAAGAGTATG+AGG | 0.504039 | 4_3:+5681937 | Msa0626290:CDS |
| GTAAGATCTTTCTGGTCTTG+GGG | 0.510930 | 4_3:-5683082 | None:intergenic |
| CCCTGCCATAGATCAGCTTA+CGG | 0.515436 | 4_3:-5681910 | None:intergenic |
| GAGTCATTCACTTCCTCCCT+CGG | 0.515591 | 4_3:+5681554 | Msa0626290:five_prime_UTR |
| CAACAATGAACATGTTGCAC+AGG | 0.520606 | 4_3:+5683343 | Msa0626290:CDS |
| AAGAGGAACCACTATGTTGA+AGG | 0.523907 | 4_3:+5683799 | Msa0626290:CDS |
| AAATTTCAGTATAAATGCCA+TGG | 0.529314 | 4_3:+5683058 | Msa0626290:intron |
| GGAAATTCAATTACACCTGC+GGG | 0.534266 | 4_3:-5684124 | None:intergenic |
| GAATGACTCTGCAGGTGCAA+AGG | 0.535299 | 4_3:-5681540 | None:intergenic |
| ACATACCCATAAGTAACATA+AGG | 0.538872 | 4_3:-5683372 | None:intergenic |
| GATTTAAAGCTTATACCCGC+AGG | 0.539513 | 4_3:+5684109 | Msa0626290:three_prime_UTR |
| ATCCACGAGATCTTGACTGT+TGG | 0.544552 | 4_3:+5683703 | Msa0626290:CDS |
| TGACAACTCAATTATTGAGC+AGG | 0.556335 | 4_3:+5683553 | Msa0626290:CDS |
| GAGGAAGTGAATGACTCTGC+AGG | 0.559290 | 4_3:-5681548 | None:intergenic |
| TTGTTTATTATTCGCATACG+AGG | 0.561538 | 4_3:+5682172 | Msa0626290:CDS |
| AGCAGAACAGGGAAGAACAA+TGG | 0.564767 | 4_3:+5681834 | Msa0626290:CDS |
| AAGCTCAAGGCTCCATTAGG+TGG | 0.567367 | 4_3:+5683766 | Msa0626290:CDS |
| TTGTTTGCTTCCTTGAAATG+TGG | 0.570988 | 4_3:-5683727 | None:intergenic |
| CCTCAGGGACTTGGAAAGCA+TGG | 0.571914 | 4_3:+5683658 | Msa0626290:intron |
| CGCGAGGCTAAGCTGAAAGG+TGG | 0.576946 | 4_3:+5682121 | Msa0626290:CDS |
| GGATAAGATCTTCAATGCAT+AGG | 0.579833 | 4_3:-5683684 | None:intergenic |
| TAGGTGGCTTAAAGAAGAAG+AGG | 0.590035 | 4_3:+5683782 | Msa0626290:CDS |
| AAGCGCGAGGCTAAGCTGAA+AGG | 0.593449 | 4_3:+5682118 | Msa0626290:CDS |
| GTCCAACAGTCAAGATCTCG+TGG | 0.596847 | 4_3:-5683705 | None:intergenic |
| CATCACCGCCTTCAACATAG+TGG | 0.607669 | 4_3:-5683807 | None:intergenic |
| ATAATTGAGTTGTCAGTGAG+AGG | 0.608273 | 4_3:-5683545 | None:intergenic |
| GGGAAATTCAATTACACCTG+CGG | 0.613915 | 4_3:-5684125 | None:intergenic |
| GTTGATTAGTTTGAAGCGCG+AGG | 0.628393 | 4_3:+5682105 | Msa0626290:CDS |
| GAGAACTCATTTACAAACGT+GGG | 0.634711 | 4_3:+5683495 | Msa0626290:CDS |
| TGTTTATTATTCGCATACGA+GGG | 0.637697 | 4_3:+5682173 | Msa0626290:CDS |
| TGTGTTGAAGAAGCAGAACA+GGG | 0.649087 | 4_3:+5681823 | Msa0626290:CDS |
| CCTTGAGCTTGAATGGCCAA+AGG | 0.649985 | 4_3:-5683753 | None:intergenic |
| AGAGAACTCATTTACAAACG+TGG | 0.653419 | 4_3:+5683494 | Msa0626290:CDS |
| AACAATGAACATGTTGCACA+GGG | 0.654102 | 4_3:+5683344 | Msa0626290:CDS |
| CCGTAAGCTGATCTATGGCA+GGG | 0.654899 | 4_3:+5681910 | Msa0626290:CDS |
| GGAAAATGACAGACAAAACG+CGG | 0.658398 | 4_3:-5684047 | None:intergenic |
| TTAGGGTTACATACCGAGGG+AGG | 0.667853 | 4_3:-5681567 | None:intergenic |
| AGGAACCACTATGTTGAAGG+CGG | 0.698307 | 4_3:+5683802 | Msa0626290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGAAAAATCATAAGATAA+CGG | - | chr4_3:5681690-5681709 | None:intergenic | 15.0% |
| !!! | ACATTTTAAAACAACTATAT+AGG | + | chr4_3:5683230-5683249 | Msa0626290:intron | 15.0% |
| !!! | CATTTTAAAACAACTATATA+GGG | + | chr4_3:5683231-5683250 | Msa0626290:intron | 15.0% |
| !!! | ATTTTAAAACAACTATATAG+GGG | + | chr4_3:5683232-5683251 | Msa0626290:intron | 15.0% |
| !!! | TAAAAAACAAATTTAAGACA+AGG | - | chr4_3:5684071-5684090 | None:intergenic | 15.0% |
| !!! | TAATGAGTTTTATCGAAATA+TGG | + | chr4_3:5682594-5682613 | Msa0626290:intron | 20.0% |
| !! | GTTCTTTACAAAAATTAACA+AGG | + | chr4_3:5682744-5682763 | Msa0626290:intron | 20.0% |
| !!! | ATTATAAAGATATGAGCTTT+TGG | - | chr4_3:5682872-5682891 | None:intergenic | 20.0% |
| !! | TACAGAACGTTATAAAAAAA+CGG | - | chr4_3:5682912-5682931 | None:intergenic | 20.0% |
| !! | ACTTAAAAATGAAGTGATAT+CGG | - | chr4_3:5683151-5683170 | None:intergenic | 20.0% |
| !! | ATCATTGTCTTTAAATCAAT+GGG | - | chr4_3:5683408-5683427 | None:intergenic | 20.0% |
| !! | AATCATTGTCTTTAAATCAA+TGG | - | chr4_3:5683409-5683428 | None:intergenic | 20.0% |
| ! | AAAGAGTGAAAGAGAAATTA+GGG | - | chr4_3:5681587-5681606 | None:intergenic | 25.0% |
| ! | GAAAATGGAAAACATACAAA+TGG | - | chr4_3:5681647-5681666 | None:intergenic | 25.0% |
| ! | GTTGAGAATCATAATGAAAA+TGG | - | chr4_3:5681662-5681681 | None:intergenic | 25.0% |
| !!! | GTTTGGTTTTTTTAGTTGTT+CGG | + | chr4_3:5681993-5682012 | Msa0626290:intron | 25.0% |
| !!! | GGTTTTGTTTTCTATTTTGT+AGG | + | chr4_3:5682075-5682094 | Msa0626290:intron | 25.0% |
| ! | TGGTATTTGATAGAAATGTA+TGG | + | chr4_3:5682614-5682633 | Msa0626290:intron | 25.0% |
| ! | TTATAAAAAAACGGAGTTGT+TGG | - | chr4_3:5682903-5682922 | None:intergenic | 25.0% |
| !! | TTTGAAGTTAACAAAGAGTT+AGG | - | chr4_3:5683040-5683059 | None:intergenic | 25.0% |
| ! | AAATTTCAGTATAAATGCCA+TGG | + | chr4_3:5683058-5683077 | Msa0626290:intron | 25.0% |
| ! | AAATAGTTGTAAGATCTTTC+TGG | - | chr4_3:5683093-5683112 | None:intergenic | 25.0% |
| !!! | CACTTCATTTTTAAGTTGTT+AGG | + | chr4_3:5683155-5683174 | Msa0626290:intron | 25.0% |
| ! | TAACACATTGTATTTCTTTG+AGG | + | chr4_3:5683189-5683208 | Msa0626290:intron | 25.0% |
| ! | AACACATTGTATTTCTTTGA+GGG | + | chr4_3:5683190-5683209 | Msa0626290:intron | 25.0% |
| ! | ATCTGTTGAGCAAAAATATT+AGG | - | chr4_3:5683291-5683310 | None:intergenic | 25.0% |
| !!! | TTGTTGCTTTGTTAACTTTA+AGG | - | chr4_3:5683329-5683348 | None:intergenic | 25.0% |
| !! | TTGCAGTGTTTAATCATTTT+AGG | + | chr4_3:5683884-5683903 | Msa0626290:three_prime_UTR | 25.0% |
| !! | TGCAGTGTTTAATCATTTTA+GGG | + | chr4_3:5683885-5683904 | Msa0626290:three_prime_UTR | 25.0% |
| !!! | GGCAATTGATATTTTTTTGT+TGG | + | chr4_3:5683907-5683926 | Msa0626290:three_prime_UTR | 25.0% |
| !! | AAGTAGGGTTTTGTAGATAT+GGG | - | chr4_3:5681493-5681512 | None:intergenic | 30.0% |
| !! | TAAGTAGGGTTTTGTAGATA+TGG | - | chr4_3:5681494-5681513 | None:intergenic | 30.0% |
| GAAAGAGTGAAAGAGAAATT+AGG | - | chr4_3:5681588-5681607 | None:intergenic | 30.0% | |
| AATGGAAAACATACAAATGG+TGG | - | chr4_3:5681644-5681663 | None:intergenic | 30.0% | |
| TGTGTAATGAATAACAGAGA+TGG | + | chr4_3:5681769-5681788 | Msa0626290:intron | 30.0% | |
| GTGTAATGAATAACAGAGAT+GGG | + | chr4_3:5681770-5681789 | Msa0626290:intron | 30.0% | |
| TTGTTTATTATTCGCATACG+AGG | + | chr4_3:5682172-5682191 | Msa0626290:CDS | 30.0% | |
| TGTTTATTATTCGCATACGA+GGG | + | chr4_3:5682173-5682192 | Msa0626290:CDS | 30.0% | |
| !!! | TGTTTTGTGTTGATTCAGAT+TGG | + | chr4_3:5682208-5682227 | Msa0626290:intron | 30.0% |
| CGCTTAATTCAATTTCATGT+TGG | - | chr4_3:5682258-5682277 | None:intergenic | 30.0% | |
| AGGACATATAGTAGAAAACA+TGG | + | chr4_3:5682371-5682390 | Msa0626290:intron | 30.0% | |
| ACATATAGTAGAAAACATGG+TGG | + | chr4_3:5682374-5682393 | Msa0626290:intron | 30.0% | |
| ! | TACCTATGGATTTTGTAGTA+AGG | + | chr4_3:5682479-5682498 | Msa0626290:intron | 30.0% |
| ! | TATATAGGGGATATTTCTGT+TGG | + | chr4_3:5683245-5683264 | Msa0626290:intron | 30.0% |
| ! | TTTGCTCAACAGATTTTCAA+TGG | + | chr4_3:5683297-5683316 | Msa0626290:CDS | 30.0% |
| ! | TTGAGCCTTATGTTACTTAT+GGG | + | chr4_3:5683367-5683386 | Msa0626290:CDS | 30.0% |
| ACATACCCATAAGTAACATA+AGG | - | chr4_3:5683375-5683394 | None:intergenic | 30.0% | |
| TTGTCTTTAAATCAATGGGA+AGG | - | chr4_3:5683404-5683423 | None:intergenic | 30.0% | |
| CTCTTACACTCTTCAAATTT+GGG | - | chr4_3:5683478-5683497 | None:intergenic | 30.0% | |
| TCTCTTACACTCTTCAAATT+TGG | - | chr4_3:5683479-5683498 | None:intergenic | 30.0% | |
| ! | GCTCATTGATGTAATTTTCA+CGG | - | chr4_3:5683840-5683859 | None:intergenic | 30.0% |
| ATTACATCAATGAGCTCATT+AGG | + | chr4_3:5683845-5683864 | Msa0626290:CDS | 30.0% | |
| ! | GCAGTGTTTAATCATTTTAG+GGG | + | chr4_3:5683886-5683905 | Msa0626290:three_prime_UTR | 30.0% |
| !! | CATTTGAGCATCTGAAATTT+TGG | + | chr4_3:5683944-5683963 | Msa0626290:three_prime_UTR | 30.0% |
| GGAAGGTTTGTGAATAAGTA+GGG | - | chr4_3:5681508-5681527 | None:intergenic | 35.0% | |
| AAATTAGGGTTACATACCGA+GGG | - | chr4_3:5681573-5681592 | None:intergenic | 35.0% | |
| !! | AAATGGTGGATCAAAGATTC+AGG | - | chr4_3:5681630-5681649 | None:intergenic | 35.0% |
| ! | ACAGTATTCTCAAGAGTATG+AGG | + | chr4_3:5681937-5681956 | Msa0626290:CDS | 35.0% |
| ! | TTCTCAAGAGTATGAGGATA+AGG | + | chr4_3:5681943-5681962 | Msa0626290:CDS | 35.0% |
| CGGATTTATAGTGATAGTTC+TGG | + | chr4_3:5682013-5682032 | Msa0626290:intron | 35.0% | |
| CTCACTAATCAATTGTGTTG+TGG | + | chr4_3:5682054-5682073 | Msa0626290:intron | 35.0% | |
| ! | TGGATTTTATGTTGATCCAG+AGG | + | chr4_3:5682141-5682160 | Msa0626290:CDS | 35.0% |
| GCGAATAATAAACAAGAGCT+TGG | - | chr4_3:5682167-5682186 | None:intergenic | 35.0% | |
| ! | TCAGATTGGATTAGAGTGTT+AGG | + | chr4_3:5682222-5682241 | Msa0626290:intron | 35.0% |
| ! | TAGAAAACATGGTGGAAACT+AGG | + | chr4_3:5682382-5682401 | Msa0626290:intron | 35.0% |
| CTCCTTACAACAAAATCCAT+AGG | - | chr4_3:5682438-5682457 | None:intergenic | 35.0% | |
| TAAGGAGAGTAGATCATACA+AGG | + | chr4_3:5682451-5682470 | Msa0626290:intron | 35.0% | |
| AAGGAGAGTAGATCATACAA+GGG | + | chr4_3:5682452-5682471 | Msa0626290:intron | 35.0% | |
| CTCCTTACTACAAAATCCAT+AGG | - | chr4_3:5682484-5682503 | None:intergenic | 35.0% | |
| TAAGGAGAGTAGATCATACA+AGG | + | chr4_3:5682451-5682470 | Msa0626290:intron | 35.0% | |
| AAGGAGAGTAGATCATACAA+GGG | + | chr4_3:5682452-5682471 | Msa0626290:intron | 35.0% | |
| AGTCAAATCACTAGAGGTAA+GGG | + | chr4_3:5682523-5682542 | Msa0626290:intron | 35.0% | |
| AAACCTTATCTCACTAAGTG+AGG | - | chr4_3:5682663-5682682 | None:intergenic | 35.0% | |
| TCACTTAGTGAGATAAGGTT+TGG | + | chr4_3:5682662-5682681 | Msa0626290:intron | 35.0% | |
| ! | CGTCTTAGTTGTTAGTTTAG+TGG | + | chr4_3:5682768-5682787 | Msa0626290:intron | 35.0% |
| ! | TGTTAGTTTAGTGGTGTTTG+TGG | + | chr4_3:5682777-5682796 | Msa0626290:intron | 35.0% |
| !! | TTCAAAAGCTTGCTGGTAAT+TGG | - | chr4_3:5682813-5682832 | None:intergenic | 35.0% |
| CAATTGTTTCAAAAGCTTGC+TGG | - | chr4_3:5682820-5682839 | None:intergenic | 35.0% | |
| ! | TGTAAGATCTTTCTGGTCTT+GGG | - | chr4_3:5683086-5683105 | None:intergenic | 35.0% |
| ! | TTGTAAGATCTTTCTGGTCT+TGG | - | chr4_3:5683087-5683106 | None:intergenic | 35.0% |
| ACAACTATTTCGATTGAGAC+AGG | + | chr4_3:5683103-5683122 | Msa0626290:CDS | 35.0% | |
| CTGTTGGTATAAAAGCAGTT+TGG | + | chr4_3:5683261-5683280 | Msa0626290:intron | 35.0% | |
| AACAATGAACATGTTGCACA+GGG | + | chr4_3:5683344-5683363 | Msa0626290:CDS | 35.0% | |
| ! | GTTGAGCCTTATGTTACTTA+TGG | + | chr4_3:5683366-5683385 | Msa0626290:CDS | 35.0% |
| AGAGAACTCATTTACAAACG+TGG | + | chr4_3:5683494-5683513 | Msa0626290:CDS | 35.0% | |
| GAGAACTCATTTACAAACGT+GGG | + | chr4_3:5683495-5683514 | Msa0626290:CDS | 35.0% | |
| ! | ATAATTGAGTTGTCAGTGAG+AGG | - | chr4_3:5683548-5683567 | None:intergenic | 35.0% |
| TGACAACTCAATTATTGAGC+AGG | + | chr4_3:5683553-5683572 | Msa0626290:CDS | 35.0% | |
| GGATAAGATCTTCAATGCAT+AGG | - | chr4_3:5683687-5683706 | None:intergenic | 35.0% | |
| TTGTTTGCTTCCTTGAAATG+TGG | - | chr4_3:5683730-5683749 | None:intergenic | 35.0% | |
| TTCTTCTTTAAGCCACCTAA+TGG | - | chr4_3:5683781-5683800 | None:intergenic | 35.0% | |
| GGGAAGGTTTGTGAATAAGT+AGG | - | chr4_3:5681509-5681528 | None:intergenic | 40.0% | |
| GAAATTAGGGTTACATACCG+AGG | - | chr4_3:5681574-5681593 | None:intergenic | 40.0% | |
| TGTGTTGAAGAAGCAGAACA+GGG | + | chr4_3:5681823-5681842 | Msa0626290:CDS | 40.0% | |
| GTTGCATTGTATGTGTCGTA+AGG | + | chr4_3:5682294-5682313 | Msa0626290:intron | 40.0% | |
| GTTAGAGAGAGAGAGAGAAT+CGG | + | chr4_3:5682345-5682364 | Msa0626290:intron | 40.0% | |
| TTAGAGAGAGAGAGAGAATC+GGG | + | chr4_3:5682346-5682365 | Msa0626290:intron | 40.0% | |
| !! | GGCCTATGGATTTTGTTGTA+AGG | + | chr4_3:5682433-5682452 | Msa0626290:intron | 40.0% |
| AGGAGAGTAGATCATACAAG+GGG | + | chr4_3:5682453-5682472 | Msa0626290:intron | 40.0% | |
| AGGAGAGTAGATCATACAAG+GGG | + | chr4_3:5682453-5682472 | Msa0626290:intron | 40.0% | |
| GAGTCAAATCACTAGAGGTA+AGG | + | chr4_3:5682522-5682541 | Msa0626290:intron | 40.0% | |
| CTTATCTCACTAAGTGAGGT+CGG | - | chr4_3:5682659-5682678 | None:intergenic | 40.0% | |
| TCAGAACAGCAAAACATCGA+AGG | - | chr4_3:5683013-5683032 | None:intergenic | 40.0% | |
| !! | GTAAGATCTTTCTGGTCTTG+GGG | - | chr4_3:5683085-5683104 | None:intergenic | 40.0% |
| CAACAATGAACATGTTGCAC+AGG | + | chr4_3:5683343-5683362 | Msa0626290:CDS | 40.0% | |
| CTCATTTACAAACGTGGGTA+TGG | + | chr4_3:5683500-5683519 | Msa0626290:CDS | 40.0% | |
| AGGAAGCAAACAACTTCCTT+TGG | + | chr4_3:5683737-5683756 | Msa0626290:CDS | 40.0% | |
| TAGGTGGCTTAAAGAAGAAG+AGG | + | chr4_3:5683782-5683801 | Msa0626290:CDS | 40.0% | |
| AAGAGGAACCACTATGTTGA+AGG | + | chr4_3:5683799-5683818 | Msa0626290:CDS | 40.0% | |
| GGAAAATGACAGACAAAACG+CGG | - | chr4_3:5684050-5684069 | None:intergenic | 40.0% | |
| ! | GATTTAAAGCTTATACCCGC+AGG | + | chr4_3:5684109-5684128 | Msa0626290:three_prime_UTR | 40.0% |
| GGAAATTCAATTACACCTGC+GGG | - | chr4_3:5684127-5684146 | None:intergenic | 40.0% | |
| GGGAAATTCAATTACACCTG+CGG | - | chr4_3:5684128-5684147 | None:intergenic | 40.0% | |
| AATGACTCTGCAGGTGCAAA+GGG | - | chr4_3:5681542-5681561 | None:intergenic | 45.0% | |
| TGCTTCTTCAACACAGACTC+AGG | - | chr4_3:5681818-5681837 | None:intergenic | 45.0% | |
| CTGTGTTGAAGAAGCAGAAC+AGG | + | chr4_3:5681822-5681841 | Msa0626290:CDS | 45.0% | |
| AGCAGAACAGGGAAGAACAA+TGG | + | chr4_3:5681834-5681853 | Msa0626290:CDS | 45.0% | |
| GCAGAACAGGGAAGAACAAT+GGG | + | chr4_3:5681835-5681854 | Msa0626290:CDS | 45.0% | |
| GAGAACCGTAAGCTGATCTA+TGG | + | chr4_3:5681905-5681924 | Msa0626290:CDS | 45.0% | |
| !! | GTTGATTAGTTTGAAGCGCG+AGG | + | chr4_3:5682105-5682124 | Msa0626290:CDS | 45.0% |
| ATAAACAAGAGCTTGGCCTC+TGG | - | chr4_3:5682160-5682179 | None:intergenic | 45.0% | |
| TGTATGTGTCGTAAGGCTGA+AGG | + | chr4_3:5682301-5682320 | Msa0626290:intron | 45.0% | |
| TAGAGAGAGAGAGAGAATCG+GGG | + | chr4_3:5682347-5682366 | Msa0626290:intron | 45.0% | |
| TGGTGGAAACTAGGCTTAGA+TGG | + | chr4_3:5682391-5682410 | Msa0626290:intron | 45.0% | |
| TGGTTTGAGCATGTAGAGAG+AGG | + | chr4_3:5682411-5682430 | Msa0626290:intron | 45.0% | |
| GGTTTGAGCATGTAGAGAGA+GGG | + | chr4_3:5682412-5682431 | Msa0626290:intron | 45.0% | |
| GGAGAGTAGATCATACAAGG+GGG | + | chr4_3:5682454-5682473 | Msa0626290:intron | 45.0% | |
| GGAGAGTAGATCATACAAGG+GGG | + | chr4_3:5682454-5682473 | Msa0626290:intron | 45.0% | |
| ACTAAGTGAGGTCGGCTATA+TGG | - | chr4_3:5682651-5682670 | None:intergenic | 45.0% | |
| CGACCTCACTTAGTGAGATA+AGG | + | chr4_3:5682657-5682676 | Msa0626290:intron | 45.0% | |
| ! | ACTTGCTTTGATGACCCTCA+GGG | + | chr4_3:5683643-5683662 | Msa0626290:intron | 45.0% |
| ATCCACGAGATCTTGACTGT+TGG | + | chr4_3:5683703-5683722 | Msa0626290:CDS | 45.0% | |
| GACTGTTGGACCACATTTCA+AGG | + | chr4_3:5683717-5683736 | Msa0626290:CDS | 45.0% | |
| AATGGAGCCTTGAGCTTGAA+TGG | - | chr4_3:5683763-5683782 | None:intergenic | 45.0% | |
| TTCAAGCTCAAGGCTCCATT+AGG | + | chr4_3:5683763-5683782 | Msa0626290:CDS | 45.0% | |
| AGGAACCACTATGTTGAAGG+CGG | + | chr4_3:5683802-5683821 | Msa0626290:CDS | 45.0% | |
| GAATGACTCTGCAGGTGCAA+AGG | - | chr4_3:5681543-5681562 | None:intergenic | 50.0% | |
| GAGGAAGTGAATGACTCTGC+AGG | - | chr4_3:5681551-5681570 | None:intergenic | 50.0% | |
| GAGTCATTCACTTCCTCCCT+CGG | + | chr4_3:5681554-5681573 | Msa0626290:five_prime_UTR | 50.0% | |
| TTAGGGTTACATACCGAGGG+AGG | - | chr4_3:5681570-5681589 | None:intergenic | 50.0% | |
| ! | CAGGGAAGAACAATGGGCTT+TGG | + | chr4_3:5681841-5681860 | Msa0626290:CDS | 50.0% |
| ACCGTAAGCTGATCTATGGC+AGG | + | chr4_3:5681909-5681928 | Msa0626290:CDS | 50.0% | |
| CCCTGCCATAGATCAGCTTA+CGG | - | chr4_3:5681913-5681932 | None:intergenic | 50.0% | |
| CCGTAAGCTGATCTATGGCA+GGG | + | chr4_3:5681910-5681929 | Msa0626290:CDS | 50.0% | |
| GTCACTGCAGTGCTCTTGTT+TGG | + | chr4_3:5681976-5681995 | Msa0626290:intron | 50.0% | |
| !! | CATACAAGGGGGAGTACCTA+TGG | + | chr4_3:5682465-5682484 | Msa0626290:intron | 50.0% |
| AGGGGGAGTCAAATCACTAG+AGG | + | chr4_3:5682517-5682536 | Msa0626290:intron | 50.0% | |
| ! | GACTTGCTTTGATGACCCTC+AGG | + | chr4_3:5683642-5683661 | Msa0626290:intron | 50.0% |
| ! | TTTGATGACCCTCAGGGACT+TGG | + | chr4_3:5683649-5683668 | Msa0626290:intron | 50.0% |
| CATGCTTTCCAAGTCCCTGA+GGG | - | chr4_3:5683660-5683679 | None:intergenic | 50.0% | |
| GTCCAACAGTCAAGATCTCG+TGG | - | chr4_3:5683708-5683727 | None:intergenic | 50.0% | |
| CCTTGAGCTTGAATGGCCAA+AGG | - | chr4_3:5683756-5683775 | None:intergenic | 50.0% | |
| CCTTTGGCCATTCAAGCTCA+AGG | + | chr4_3:5683753-5683772 | Msa0626290:CDS | 50.0% | |
| AAGCTCAAGGCTCCATTAGG+TGG | + | chr4_3:5683766-5683785 | Msa0626290:CDS | 50.0% | |
| CATCACCGCCTTCAACATAG+TGG | - | chr4_3:5683810-5683829 | None:intergenic | 50.0% | |
| TATGTTGAAGGCGGTGATGC+TGG | + | chr4_3:5683811-5683830 | Msa0626290:CDS | 50.0% | |
| ! | AAAGGGTTTTCGCTGCGGGA+AGG | - | chr4_3:5681525-5681544 | None:intergenic | 55.0% |
| ! | GTGCAAAGGGTTTTCGCTGC+GGG | - | chr4_3:5681529-5681548 | None:intergenic | 55.0% |
| ! | GGTGCAAAGGGTTTTCGCTG+CGG | - | chr4_3:5681530-5681549 | None:intergenic | 55.0% |
| AAGCGCGAGGCTAAGCTGAA+AGG | + | chr4_3:5682118-5682137 | Msa0626290:CDS | 55.0% | |
| GAGAGAGAGAGAATCGGGGT+AGG | + | chr4_3:5682351-5682370 | Msa0626290:intron | 55.0% | |
| GCATGTAGAGAGAGGGCCTA+TGG | + | chr4_3:5682419-5682438 | Msa0626290:intron | 55.0% | |
| !! | CTTTCTGGTCTTGGGGTCCA+TGG | - | chr4_3:5683078-5683097 | None:intergenic | 55.0% |
| CCATGCTTTCCAAGTCCCTG+AGG | - | chr4_3:5683661-5683680 | None:intergenic | 55.0% | |
| CCTCAGGGACTTGGAAAGCA+TGG | + | chr4_3:5683658-5683677 | Msa0626290:intron | 55.0% | |
| CGCGAGGCTAAGCTGAAAGG+TGG | + | chr4_3:5682121-5682140 | Msa0626290:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 5681483 | 5684147 | 5681483 | ID=Msa0626290;Name=Msa0626290 |
| chr4_3 | mRNA | 5681483 | 5684147 | 5681483 | ID=Msa0626290-mRNA-1;Parent=Msa0626290;Name=Msa0626290-mRNA-1;_AED=0.07;_eAED=0.07;_QI=95|0.83|0.85|1|0.83|0.71|7|268|253 |
| chr4_3 | exon | 5681483 | 5681575 | 5681483 | ID=Msa0626290-mRNA-1:exon:1573;Parent=Msa0626290-mRNA-1 |
| chr4_3 | exon | 5681786 | 5681964 | 5681786 | ID=Msa0626290-mRNA-1:exon:1574;Parent=Msa0626290-mRNA-1 |
| chr4_3 | exon | 5682097 | 5682194 | 5682097 | ID=Msa0626290-mRNA-1:exon:1575;Parent=Msa0626290-mRNA-1 |
| chr4_3 | exon | 5683067 | 5683124 | 5683067 | ID=Msa0626290-mRNA-1:exon:1576;Parent=Msa0626290-mRNA-1 |
| chr4_3 | exon | 5683279 | 5683388 | 5683279 | ID=Msa0626290-mRNA-1:exon:1577;Parent=Msa0626290-mRNA-1 |
| chr4_3 | exon | 5683472 | 5683574 | 5683472 | ID=Msa0626290-mRNA-1:exon:1578;Parent=Msa0626290-mRNA-1 |
| chr4_3 | exon | 5683664 | 5684147 | 5683664 | ID=Msa0626290-mRNA-1:exon:1579;Parent=Msa0626290-mRNA-1 |
| chr4_3 | five_prime_UTR | 5681483 | 5681575 | 5681483 | ID=Msa0626290-mRNA-1:five_prime_utr;Parent=Msa0626290-mRNA-1 |
| chr4_3 | five_prime_UTR | 5681786 | 5681787 | 5681786 | ID=Msa0626290-mRNA-1:five_prime_utr;Parent=Msa0626290-mRNA-1 |
| chr4_3 | CDS | 5681788 | 5681964 | 5681788 | ID=Msa0626290-mRNA-1:cds;Parent=Msa0626290-mRNA-1 |
| chr4_3 | CDS | 5682097 | 5682194 | 5682097 | ID=Msa0626290-mRNA-1:cds;Parent=Msa0626290-mRNA-1 |
| chr4_3 | CDS | 5683067 | 5683124 | 5683067 | ID=Msa0626290-mRNA-1:cds;Parent=Msa0626290-mRNA-1 |
| chr4_3 | CDS | 5683279 | 5683388 | 5683279 | ID=Msa0626290-mRNA-1:cds;Parent=Msa0626290-mRNA-1 |
| chr4_3 | CDS | 5683472 | 5683574 | 5683472 | ID=Msa0626290-mRNA-1:cds;Parent=Msa0626290-mRNA-1 |
| chr4_3 | CDS | 5683664 | 5683879 | 5683664 | ID=Msa0626290-mRNA-1:cds;Parent=Msa0626290-mRNA-1 |
| chr4_3 | three_prime_UTR | 5683880 | 5684147 | 5683880 | ID=Msa0626290-mRNA-1:three_prime_utr;Parent=Msa0626290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
