AlfalfaGEDB | Msa0222730

M. sativa cultivar zhongmu-4 / Msa0222730

KEGG: K02893
GO: -
PFAM: PF03939.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0222730	XP_003597322.1	100.000	154	0	0	1	154	1	154	3.58e-103	302

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0222730	sp\|Q9AT35\|RL23A_DAUCA	87.013	154	20	0	1	154	1	154	1.71e-83	245

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0222730	B7FGR0	100.000	154	0	0	1	154	1	154	1.71e-103	302

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002750	Msa0222730	0.816639	4.984313e-52	-8.615850e-47
Msa0002790	Msa0222730	0.827171	1.812729e-54	-8.615850e-47
Msa0022970	Msa0222730	0.801586	8.394872e-49	-8.615850e-47
Msa0032780	Msa0222730	0.862654	4.349396e-64	-8.615850e-47
Msa0040220	Msa0222730	0.850320	1.832778e-60	-8.615850e-47
Msa0074030	Msa0222730	0.818121	2.312859e-52	-8.615850e-47
Msa0085780	Msa0222730	0.829301	5.558138e-55	-8.615850e-47
Msa0087910	Msa0222730	0.880386	5.731125e-70	-8.615850e-47
Msa0116670	Msa0222730	0.836638	8.320406e-57	-8.615850e-47
Msa0133540	Msa0222730	0.843553	1.305676e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0222730	MtrunA17_Chr2g0327781	100.000	154	0	0	1	154	1	154	3.29e-107	302
Msa0222730	MtrunA17_Chr4g0030821	95.364	151	6	1	4	154	3	152	4.20e-81	236
Msa0222730	MtrunA17_Chr7g0222741	93.506	154	10	0	1	154	1	154	3.56e-71	211

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0222730	AT3G55280.1	87.662	154	19	1	154	1	154	1.89e-71	212
Msa0222730	AT3G55280.2	87.662	154	19	1	154	1	154	1.89e-71	212
Msa0222730	AT2G39460.1	87.662	154	19	1	154	1	154	3.05e-68	204
Msa0222730	AT2G39460.2	87.662	154	19	1	154	1	154	3.05e-68	204
Msa0222730	AT3G55280.3	93.220	118	8	37	154	31	148	4.61e-67	201

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Find 91 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCTGCGTGAAACCTGTG+TGG	0.746608	2_1:-72087143	None:intergenic
AACAAAGTCCTCTTAAGAGA+TGG	0.577741	2_1:-72089390	None:intergenic
AACAAGATTGGGATTATTTA+AGG	0.136899	2_1:+72089032	Msa0222730:CDS
AACAAGTAGGCAAATGGTCT+GGG	0.408451	2_1:+72089549	Msa0222730:three_prime_UTR
AAGATCTGTGCTGTCACATT+TGG	0.315998	2_1:+72089429	Msa0222730:three_prime_UTR
AATCTTGAGAATTAGGTAGA+TGG	0.416006	2_1:-72089366	None:intergenic
ACAAGTAGGCAAATGGTCTG+GGG	0.680323	2_1:+72089550	Msa0222730:three_prime_UTR
ACAGGCCAAAGACTTTATCT+AGG	0.384705	2_1:+72088432	Msa0222730:CDS
ACATCCAAAGCATCATAATC+AGG	0.461568	2_1:-72089005	None:intergenic
ACGCAGATTTCACATCTAAG+GGG	0.669567	2_1:+72087156	Msa0222730:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGAAAACAGATGCAGAAAT+TGG	-	chr2_1:72087283-72087302	None:intergenic	30.0%
ATCTCCATGATTATTGCTTT+CGG	+	chr2_1:72087862-72087881	Msa0222730:intron	30.0%
TAAGCTATTCTTGTGCAAAT+GGG	-	chr2_1:72088148-72088167	None:intergenic	30.0%
ATAAGCTATTCTTGTGCAAA+TGG	-	chr2_1:72088149-72088168	None:intergenic	30.0%
TATACATAAAAGGTCCTGTT+TGG	-	chr2_1:72088227-72088246	None:intergenic	30.0%
AGCTGACAAAAAGAAAATCA+AGG	+	chr2_1:72088601-72088620	Msa0222730:CDS	30.0%
GTAATAACATGTACATACAC+TGG	+	chr2_1:72088805-72088824	Msa0222730:intron	30.0%
TATCATATCCCTTCACAATA+GGG	-	chr2_1:72088860-72088879	None:intergenic	30.0%
TTTGACGCAAAGTTAAATTC+CGG	+	chr2_1:72089130-72089149	Msa0222730:three_prime_UTR	30.0%
CACAATAACAAAACACAATC+CGG	-	chr2_1:72089152-72089171	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	72087123	72089799	72087123	ID=Msa0222730;Name=Msa0222730
chr2_1	mRNA	72087123	72089799	72087123	ID=Msa0222730-mRNA-1;Parent=Msa0222730;Name=Msa0222730-mRNA-1;_AED=0.01;_eAED=0.01;_QI=77\|1\|1\|1\|1\|1\|3\|747\|154
chr2_1	exon	72087123	72087215	72087123	ID=Msa0222730-mRNA-1:exon:20766;Parent=Msa0222730-mRNA-1
chr2_1	exon	72088315	72088678	72088315	ID=Msa0222730-mRNA-1:exon:20767;Parent=Msa0222730-mRNA-1
chr2_1	exon	72088968	72089799	72088968	ID=Msa0222730-mRNA-1:exon:20768;Parent=Msa0222730-mRNA-1
chr2_1	five_prime_UTR	72087123	72087199	72087123	ID=Msa0222730-mRNA-1:five_prime_utr;Parent=Msa0222730-mRNA-1
chr2_1	CDS	72087200	72087215	72087200	ID=Msa0222730-mRNA-1:cds;Parent=Msa0222730-mRNA-1
chr2_1	CDS	72088315	72088678	72088315	ID=Msa0222730-mRNA-1:cds;Parent=Msa0222730-mRNA-1
chr2_1	CDS	72088968	72089052	72088968	ID=Msa0222730-mRNA-1:cds;Parent=Msa0222730-mRNA-1
chr2_1	three_prime_UTR	72089053	72089799	72089053	ID=Msa0222730-mRNA-1:three_prime_utr;Parent=Msa0222730-mRNA-1

Gene Sequence

>Msa0222730

ATGGCTCCACCAAAAGGTGATGGTGCAAAGAAGACCGATCCAAAGGCACAGGCCTTGAAAGCTGCGAAAGCAGTGAAGTCAGGCACTGCCATCAAGAAGAAGGCAAAGAAGATCAGGACAACTGTTACATTCCACAGGCCAAAGACTTTATCTAGGGATAGGAATCCAAAATACCCTCGGATTAGTGCTACACCAAGGAACAAACTTGATCATTATCAGATTTTGAAGTATCCGCTCACAACTGAGTCAGCAATGAAGAAGATTGAAGACAACAACACTTTGGTTTTCATTGTTGACTTGCGAGCTGACAAAAAGAAAATCAAGGATGCCGTGAAGAAAATGTACGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGGCCCGATGGCACCAAGAAGGCCTATGTAAGGTTGACACCTGATTATGATGCTTTGGATGTTGCAAACAAGATTGGGATTATTTAA

Protein sequence

>Msa0222730

MAPPKGDGAKKTDPKAQALKAAKAVKSGTAIKKKAKKIRTTVTFHRPKTLSRDRNPKYPRISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII*