Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0222730 | XP_003597322.1 | 100.000 | 154 | 0 | 0 | 1 | 154 | 1 | 154 | 3.58e-103 | 302 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0222730 | sp|Q9AT35|RL23A_DAUCA | 87.013 | 154 | 20 | 0 | 1 | 154 | 1 | 154 | 1.71e-83 | 245 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0222730 | B7FGR0 | 100.000 | 154 | 0 | 0 | 1 | 154 | 1 | 154 | 1.71e-103 | 302 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa0222730 | 0.816639 | 4.984313e-52 | -8.615850e-47 |
| Msa0002790 | Msa0222730 | 0.827171 | 1.812729e-54 | -8.615850e-47 |
| Msa0022970 | Msa0222730 | 0.801586 | 8.394872e-49 | -8.615850e-47 |
| Msa0032780 | Msa0222730 | 0.862654 | 4.349396e-64 | -8.615850e-47 |
| Msa0040220 | Msa0222730 | 0.850320 | 1.832778e-60 | -8.615850e-47 |
| Msa0074030 | Msa0222730 | 0.818121 | 2.312859e-52 | -8.615850e-47 |
| Msa0085780 | Msa0222730 | 0.829301 | 5.558138e-55 | -8.615850e-47 |
| Msa0087910 | Msa0222730 | 0.880386 | 5.731125e-70 | -8.615850e-47 |
| Msa0116670 | Msa0222730 | 0.836638 | 8.320406e-57 | -8.615850e-47 |
| Msa0133540 | Msa0222730 | 0.843553 | 1.305676e-58 | -8.615850e-47 |
| Msa0134580 | Msa0222730 | 0.847870 | 8.794117e-60 | -8.615850e-47 |
| Msa0146340 | Msa0222730 | 0.807269 | 5.489072e-50 | -8.615850e-47 |
| Msa0172900 | Msa0222730 | 0.842853 | 2.006879e-58 | -8.615850e-47 |
| Msa0173530 | Msa0222730 | 0.835885 | 1.292946e-56 | -8.615850e-47 |
| Msa0181490 | Msa0222730 | 0.838045 | 3.630282e-57 | -8.615850e-47 |
| Msa0184650 | Msa0222730 | 0.841840 | 3.722773e-58 | -8.615850e-47 |
| Msa0186740 | Msa0222730 | 0.831760 | 1.390148e-55 | -8.615850e-47 |
| Msa0191450 | Msa0222730 | 0.804856 | 1.767100e-49 | -8.615850e-47 |
| Msa0191550 | Msa0222730 | 0.801484 | 8.808995e-49 | -8.615850e-47 |
| Msa0192750 | Msa0222730 | 0.825180 | 5.395336e-54 | -8.615850e-47 |
| Msa0194940 | Msa0222730 | 0.876150 | 1.755001e-68 | -8.615850e-47 |
| Msa0210330 | Msa0222730 | 0.847711 | 9.731335e-60 | -8.615850e-47 |
| Msa0210360 | Msa0222730 | 0.887163 | 1.816595e-72 | -8.615850e-47 |
| Msa0222730 | Msa0229150 | 0.810429 | 1.157787e-50 | -8.615850e-47 |
| Msa0222730 | Msa0230490 | 0.843001 | 1.832218e-58 | -8.615850e-47 |
| Msa0222730 | Msa0235050 | 0.805081 | 1.585351e-49 | -8.615850e-47 |
| Msa0222730 | Msa0250820 | 0.830018 | 3.719727e-55 | -8.615850e-47 |
| Msa0222730 | Msa0264010 | 0.937292 | 4.393431e-98 | -8.615850e-47 |
| Msa0222730 | Msa0297830 | 0.814354 | 1.608313e-51 | -8.615850e-47 |
| Msa0222730 | Msa0301220 | 0.844321 | 8.127547e-59 | -8.615850e-47 |
| Msa0222730 | Msa0306690 | 0.813628 | 2.324675e-51 | -8.615850e-47 |
| Msa0222730 | Msa0312210 | 0.837958 | 3.822002e-57 | -8.615850e-47 |
| Msa0222730 | Msa0315430 | 0.806869 | 6.672183e-50 | -8.615850e-47 |
| Msa0222730 | Msa0327300 | 0.825327 | 4.979321e-54 | -8.615850e-47 |
| Msa0222730 | Msa0327330 | 0.807809 | 4.215267e-50 | -8.615850e-47 |
| Msa0222730 | Msa0335840 | 0.822633 | 2.133799e-53 | -8.615850e-47 |
| Msa0222730 | Msa0342850 | 0.869948 | 2.110562e-66 | -8.615850e-47 |
| Msa0222730 | Msa0369410 | 0.829216 | 5.826479e-55 | -8.615850e-47 |
| Msa0222730 | Msa0426090 | 0.833371 | 5.541103e-56 | -8.615850e-47 |
| Msa0222730 | Msa0426250 | 0.852899 | 3.409310e-61 | -8.615850e-47 |
| Msa0222730 | Msa0463520 | 0.821529 | 3.847537e-53 | -8.615850e-47 |
| Msa0222730 | Msa0471880 | 0.812005 | 5.270825e-51 | -8.615850e-47 |
| Msa0222730 | Msa0472480 | 0.824093 | 9.728740e-54 | -8.615850e-47 |
| Msa0222730 | Msa0475810 | 0.853205 | 2.786577e-61 | -8.615850e-47 |
| Msa0222730 | Msa0481520 | 0.838661 | 2.518621e-57 | -8.615850e-47 |
| Msa0222730 | Msa0481850 | 0.858259 | 9.311343e-63 | -8.615850e-47 |
| Msa0222730 | Msa0483110 | 0.855563 | 5.801146e-62 | -8.615850e-47 |
| Msa0222730 | Msa0529900 | 0.853530 | 2.248279e-61 | -8.615850e-47 |
| Msa0222730 | Msa0550420 | 0.843286 | 1.538600e-58 | -8.615850e-47 |
| Msa0222730 | Msa0557720 | 0.837596 | 4.736285e-57 | -8.615850e-47 |
| Msa0222730 | Msa0605890 | 0.806233 | 9.088212e-50 | -8.615850e-47 |
| Msa0222730 | Msa0608260 | 0.803133 | 4.031553e-49 | -8.615850e-47 |
| Msa0222730 | Msa0622230 | 0.822705 | 2.053296e-53 | -8.615850e-47 |
| Msa0222730 | Msa0622750 | 0.827695 | 1.357331e-54 | -8.615850e-47 |
| Msa0222730 | Msa0626290 | 0.800414 | 1.457608e-48 | -8.615850e-47 |
| Msa0222730 | Msa0653060 | 0.856637 | 2.811411e-62 | -8.615850e-47 |
| Msa0222730 | Msa0691330 | 0.801932 | 7.131539e-49 | -8.615850e-47 |
| Msa0222730 | Msa0705800 | 0.821535 | 3.834671e-53 | -8.615850e-47 |
| Msa0222730 | Msa0712610 | 0.820241 | 7.608878e-53 | -8.615850e-47 |
| Msa0222730 | Msa0748350 | 0.811599 | 6.458775e-51 | -8.615850e-47 |
| Msa0222730 | Msa0781080 | 0.820331 | 7.258119e-53 | -8.615850e-47 |
| Msa0222730 | Msa0788380 | 0.817607 | 3.021214e-52 | -8.615850e-47 |
| Msa0222730 | Msa0848240 | 0.828733 | 7.630445e-55 | -8.615850e-47 |
| Msa0222730 | Msa0861320 | 0.830971 | 2.174427e-55 | -8.615850e-47 |
| Msa0222730 | Msa0876170 | 0.811026 | 8.600385e-51 | -8.615850e-47 |
| Msa0222730 | Msa0902220 | 0.808325 | 3.274599e-50 | -8.615850e-47 |
| Msa0222730 | Msa0927910 | 0.801190 | 1.012211e-48 | -8.615850e-47 |
| Msa0222730 | Msa1010310 | 0.813060 | 3.098461e-51 | -8.615850e-47 |
| Msa0222730 | Msa1037290 | 0.832297 | 1.024430e-55 | -8.615850e-47 |
| Msa0222730 | Msa1040160 | 0.849392 | 3.331276e-60 | -8.615850e-47 |
| Msa0222730 | Msa1050100 | 0.822924 | 1.826055e-53 | -8.615850e-47 |
| Msa0222730 | Msa1078870 | 0.849890 | 2.417661e-60 | -8.615850e-47 |
| Msa0222730 | Msa1078980 | 0.840662 | 7.595723e-58 | -8.615850e-47 |
| Msa0222730 | Msa1079920 | 0.821551 | 3.801418e-53 | -8.615850e-47 |
| Msa0222730 | Msa1080350 | 0.862924 | 3.588645e-64 | -8.615850e-47 |
| Msa0222730 | Msa1083370 | 0.861878 | 7.527965e-64 | -8.615850e-47 |
| Msa0222730 | Msa1124850 | 0.877790 | 4.737083e-69 | -8.615850e-47 |
| Msa0222730 | Msa1125860 | 0.854941 | 8.801165e-62 | -8.615850e-47 |
| Msa0222730 | Msa1126060 | 0.857615 | 1.447093e-62 | -8.615850e-47 |
| Msa0222730 | Msa1126520 | 0.832389 | 9.721117e-56 | -8.615850e-47 |
| Msa0222730 | Msa1128120 | 0.864709 | 1.000253e-64 | -8.615850e-47 |
| Msa0222730 | Msa1164150 | 0.823941 | 1.056366e-53 | -8.615850e-47 |
| Msa0222730 | Msa1165640 | 0.827035 | 1.953816e-54 | -8.615850e-47 |
| Msa0222730 | Msa1167540 | 0.869844 | 2.283177e-66 | -8.615850e-47 |
| Msa0222730 | Msa1167550 | 0.845009 | 5.305615e-59 | -8.615850e-47 |
| Msa0222730 | Msa1169180 | 0.838410 | 2.923199e-57 | -8.615850e-47 |
| Msa0222730 | Msa1186030 | 0.817012 | 4.111109e-52 | -8.615850e-47 |
| Msa0222730 | Msa1203560 | 0.809721 | 1.645213e-50 | -8.615850e-47 |
| Msa0222730 | Msa1215820 | 0.822368 | 2.458715e-53 | -8.615850e-47 |
| Msa0222730 | Msa1295150 | 0.885452 | 8.030706e-72 | -8.615850e-47 |
| Msa0222730 | Msa1295170 | 0.877697 | 5.105709e-69 | -8.615850e-47 |
| Msa0222730 | Msa1311400 | 0.866563 | 2.601990e-65 | -8.615850e-47 |
| Msa0222730 | Msa1332250 | 0.852104 | 5.743822e-61 | -8.615850e-47 |
| Msa0222730 | Msa1338190 | 0.812149 | 4.901186e-51 | -8.615850e-47 |
| Msa0222730 | Msa1356790 | 0.814755 | 1.310575e-51 | -8.615850e-47 |
| Msa0222730 | Msa1362210 | 0.802585 | 5.231596e-49 | -8.615850e-47 |
| Msa0222730 | Msa1368920 | 0.831151 | 1.963917e-55 | -8.615850e-47 |
| Msa0222730 | Msa1392590 | 0.855084 | 7.995396e-62 | -8.615850e-47 |
| Msa0222730 | Msa1397100 | 0.811796 | 5.853448e-51 | -8.615850e-47 |
| Msa0222730 | Msa1403910 | 0.807578 | 4.721214e-50 | -8.615850e-47 |
| Msa0222730 | Msa1407070 | 0.817599 | 3.033088e-52 | -8.615850e-47 |
| Msa0222730 | Msa1418770 | 0.817068 | 3.994926e-52 | -8.615850e-47 |
| Msa0222730 | Msa1426120 | 0.858209 | 9.638425e-63 | -8.615850e-47 |
| Msa0222730 | Msa1426490 | 0.809032 | 2.311657e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0222730 | MtrunA17_Chr2g0327781 | 100.000 | 154 | 0 | 0 | 1 | 154 | 1 | 154 | 3.29e-107 | 302 |
| Msa0222730 | MtrunA17_Chr4g0030821 | 95.364 | 151 | 6 | 1 | 4 | 154 | 3 | 152 | 4.20e-81 | 236 |
| Msa0222730 | MtrunA17_Chr7g0222741 | 93.506 | 154 | 10 | 0 | 1 | 154 | 1 | 154 | 3.56e-71 | 211 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0222730 | AT3G55280.1 | 87.662 | 154 | 19 | 0 | 1 | 154 | 1 | 154 | 1.89e-71 | 212 |
| Msa0222730 | AT3G55280.2 | 87.662 | 154 | 19 | 0 | 1 | 154 | 1 | 154 | 1.89e-71 | 212 |
| Msa0222730 | AT2G39460.1 | 87.662 | 154 | 19 | 0 | 1 | 154 | 1 | 154 | 3.05e-68 | 204 |
| Msa0222730 | AT2G39460.2 | 87.662 | 154 | 19 | 0 | 1 | 154 | 1 | 154 | 3.05e-68 | 204 |
| Msa0222730 | AT3G55280.3 | 93.220 | 118 | 8 | 0 | 37 | 154 | 31 | 148 | 4.61e-67 | 201 |
Find 91 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAAGATTGGGATTATTTA+AGG | 0.136899 | 2_1:+72089032 | Msa0222730:CDS |
| AGTTCGATTGCAATTAAATT+TGG | 0.183176 | 2_1:+72089178 | Msa0222730:three_prime_UTR |
| CAGCCAAGTGTTCCATTTAT+AGG | 0.202696 | 2_1:-72089629 | None:intergenic |
| CTTCTTTGCCTTCTTCTTGA+TGG | 0.213233 | 2_1:-72088387 | None:intergenic |
| GCACTAATCCGAGGGTATTT+TGG | 0.229197 | 2_1:-72088464 | None:intergenic |
| GATCAAGGTGTTAACTTTCT+TGG | 0.259114 | 2_1:-72088654 | None:intergenic |
| CAACCTTACATAGGCCTTCT+TGG | 0.259824 | 2_1:-72088979 | None:intergenic |
| CATATGGTTTAGCCTATAAA+TGG | 0.287603 | 2_1:+72089617 | Msa0222730:three_prime_UTR |
| TCACGCAGATTTCACATCTA+AGG | 0.290602 | 2_1:+72087154 | Msa0222730:five_prime_UTR |
| AGATGGTAATCTTGAGAATT+AGG | 0.291366 | 2_1:-72089373 | None:intergenic |
| AAGATCTGTGCTGTCACATT+TGG | 0.315998 | 2_1:+72089429 | Msa0222730:three_prime_UTR |
| GCTTTCAAGGCCTGTGCCTT+TGG | 0.317092 | 2_1:-72088338 | None:intergenic |
| ATTAATTTCAGTAGTTCTAT+AGG | 0.318193 | 2_1:+72089735 | Msa0222730:three_prime_UTR |
| TTACGATGTACTTGCACATA+TGG | 0.332669 | 2_1:+72089601 | Msa0222730:three_prime_UTR |
| CTACGTATCATGCTGAATTC+TGG | 0.336270 | 2_1:+72089775 | Msa0222730:three_prime_UTR |
| CTATCCCTAGATAAAGTCTT+TGG | 0.341250 | 2_1:-72088437 | None:intergenic |
| CACTGCTTTCGCAGCTTTCA+AGG | 0.343655 | 2_1:-72088351 | None:intergenic |
| CCTACTTGCTTAGCATTATG+AGG | 0.361512 | 2_1:-72089479 | None:intergenic |
| CAAGATTACCATCTCTTAAG+AGG | 0.384533 | 2_1:+72089382 | Msa0222730:three_prime_UTR |
| ACAGGCCAAAGACTTTATCT+AGG | 0.384705 | 2_1:+72088432 | Msa0222730:CDS |
| ATTGGGATTATTTAAGGTAA+TGG | 0.385537 | 2_1:+72089038 | Msa0222730:exon |
| AACAAGTAGGCAAATGGTCT+GGG | 0.408451 | 2_1:+72089549 | Msa0222730:three_prime_UTR |
| GAACAAGTAGGCAAATGGTC+TGG | 0.411419 | 2_1:+72089548 | Msa0222730:three_prime_UTR |
| GACACCTGATTATGATGCTT+TGG | 0.412386 | 2_1:+72089001 | Msa0222730:CDS |
| GAGAATTAGGTAGATGGCTT+AGG | 0.412782 | 2_1:-72089360 | None:intergenic |
| TTGGATGTTGCAAACAAGAT+TGG | 0.413392 | 2_1:+72089020 | Msa0222730:CDS |
| CCTACTTGTTCAGCATTATG+AGG | 0.414136 | 2_1:-72089536 | None:intergenic |
| AATCTTGAGAATTAGGTAGA+TGG | 0.416006 | 2_1:-72089366 | None:intergenic |
| CACAATAACAAAACACAATC+CGG | 0.420029 | 2_1:-72089149 | None:intergenic |
| AGATCTGTGCTGTCACATTT+GGG | 0.421441 | 2_1:+72089430 | Msa0222730:three_prime_UTR |
| TAGGTAGATGGCTTAGGCTT+AGG | 0.421556 | 2_1:-72089354 | None:intergenic |
| CTTCATCTTCTACGATTCAA+TGG | 0.425878 | 2_1:+72087181 | Msa0222730:exon |
| TGGATGTTGCAAACAAGATT+GGG | 0.427718 | 2_1:+72089021 | Msa0222730:CDS |
| ATAGGCCTTCTTGGTGCCAT+CGG | 0.428001 | 2_1:-72088970 | None:intergenic |
| AGAAGAAGGCAAAGAAGATC+AGG | 0.439428 | 2_1:+72088393 | Msa0222730:CDS |
| TTTGACGCAAAGTTAAATTC+CGG | 0.442084 | 2_1:+72089130 | Msa0222730:three_prime_UTR |
| TTAGGCTTAGGCTGAGTTGA+TGG | 0.447685 | 2_1:-72089336 | None:intergenic |
| CAAGGCCTGTGCCTTTGGAT+CGG | 0.452797 | 2_1:-72088333 | None:intergenic |
| AGGTGTTAACTTTCTTGGCC+TGG | 0.453520 | 2_1:-72088649 | None:intergenic |
| GGATTATTTAAGGTAATGGC+TGG | 0.458048 | 2_1:+72089042 | Msa0222730:exon |
| CACGCAGATTTCACATCTAA+GGG | 0.458062 | 2_1:+72087155 | Msa0222730:five_prime_UTR |
| ACATCCAAAGCATCATAATC+AGG | 0.461568 | 2_1:-72089005 | None:intergenic |
| GCTGCGAAAGCAGTGAAGTC+AGG | 0.467790 | 2_1:+72088359 | Msa0222730:CDS |
| GATGGCTTAGGCTTAGGCTT+AGG | 0.477823 | 2_1:-72089348 | None:intergenic |
| GTAACTGAGGTTGGTGGTCA+AGG | 0.493313 | 2_1:+72089572 | Msa0222730:three_prime_UTR |
| ATGCTGAACAAGTAGGCAAA+TGG | 0.493728 | 2_1:+72089543 | Msa0222730:three_prime_UTR |
| TAGGCCTTCTTGGTGCCATC+GGG | 0.494781 | 2_1:-72088969 | None:intergenic |
| ATGCTAAGCAAGTAGGCAAA+AGG | 0.497527 | 2_1:+72089486 | Msa0222730:three_prime_UTR |
| TAATGATCAAGTTTGTTCCT+TGG | 0.498760 | 2_1:-72088491 | None:intergenic |
| GATTCAATGGCTCCACCAAA+AGG | 0.506159 | 2_1:+72087194 | Msa0222730:exon |
| AGAAAGTTAACACCTTGATC+AGG | 0.514403 | 2_1:+72088657 | Msa0222730:CDS |
| GATTGAAGACAACAACACTT+TGG | 0.518542 | 2_1:+72088559 | Msa0222730:CDS |
| CAAAGACTTTATCTAGGGAT+AGG | 0.519733 | 2_1:+72088438 | Msa0222730:CDS |
| GAAGAAAATGTACGACATCC+AGG | 0.525002 | 2_1:+72088631 | Msa0222730:CDS |
| CCTAAAGGCTTACCTGATCA+AGG | 0.532987 | 2_1:-72088669 | None:intergenic |
| TCTGGGGTAACTGAGGTTGG+TGG | 0.536382 | 2_1:+72089566 | Msa0222730:three_prime_UTR |
| GCTGAGCTAGTTTGAAAATG+TGG | 0.543049 | 2_1:+72089648 | Msa0222730:three_prime_UTR |
| CAGGCCCGATGGCACCAAGA+AGG | 0.551305 | 2_1:+72088965 | Msa0222730:intron |
| TAGCCTATAAATGGAACACT+TGG | 0.552070 | 2_1:+72089626 | Msa0222730:three_prime_UTR |
| GCACCAAGAAGGCCTATGTA+AGG | 0.556146 | 2_1:+72088976 | Msa0222730:CDS |
| TGGTCTGGGGTAACTGAGGT+TGG | 0.557367 | 2_1:+72089563 | Msa0222730:three_prime_UTR |
| GTATGATCAGTAATTTATGT+TGG | 0.560241 | 2_1:+72089704 | Msa0222730:three_prime_UTR |
| AGGCACTGCCATCAAGAAGA+AGG | 0.565573 | 2_1:+72088379 | Msa0222730:CDS |
| CAGGCCAAAGACTTTATCTA+GGG | 0.565675 | 2_1:+72088433 | Msa0222730:CDS |
| GAAGACCGATCCAAAGGCAC+AGG | 0.567558 | 2_1:+72088328 | Msa0222730:CDS |
| ACTGTCTGCTTCCACCACAC+AGG | 0.577415 | 2_1:+72087129 | Msa0222730:five_prime_UTR |
| AACAAAGTCCTCTTAAGAGA+TGG | 0.577741 | 2_1:-72089390 | None:intergenic |
| CCTCATAATGCTAAGCAAGT+AGG | 0.580047 | 2_1:+72089479 | Msa0222730:three_prime_UTR |
| TAGATAAAGTCTTTGGCCTG+TGG | 0.590574 | 2_1:-72088430 | None:intergenic |
| ATGTGCTATGAACATAATTG+AGG | 0.592048 | 2_1:+72089287 | Msa0222730:three_prime_UTR |
| GGACAACTGTTACATTCCAC+AGG | 0.605601 | 2_1:+72088414 | Msa0222730:CDS |
| TGCAAAGAAGACCGATCCAA+AGG | 0.612710 | 2_1:+72088322 | Msa0222730:CDS |
| CCTCATAATGCTGAACAAGT+AGG | 0.614601 | 2_1:+72089536 | Msa0222730:three_prime_UTR |
| CAAAAGGTCTGCGGTAACCA+AGG | 0.622635 | 2_1:+72089502 | Msa0222730:three_prime_UTR |
| TACGTAGTATGACAACATCC+AGG | 0.622710 | 2_1:-72089684 | None:intergenic |
| ATAGGAATCCAAAATACCCT+CGG | 0.629797 | 2_1:+72088456 | Msa0222730:CDS |
| ATCAGGTGTCAACCTTACAT+AGG | 0.633043 | 2_1:-72088988 | None:intergenic |
| CAAATGGTCTGGGGTAACTG+AGG | 0.649166 | 2_1:+72089559 | Msa0222730:three_prime_UTR |
| ATTGCTGACTCAGTTGTGAG+CGG | 0.651573 | 2_1:-72088530 | None:intergenic |
| TTGGTGTAGCACTAATCCGA+GGG | 0.658734 | 2_1:-72088472 | None:intergenic |
| CTTGGTGTAGCACTAATCCG+AGG | 0.662347 | 2_1:-72088473 | None:intergenic |
| ACGCAGATTTCACATCTAAG+GGG | 0.669567 | 2_1:+72087156 | Msa0222730:five_prime_UTR |
| TCTGCGTGAAACCTGTGTGG+TGG | 0.673550 | 2_1:-72087140 | None:intergenic |
| GCAAGTAGGCAAAAGGTCTG+CGG | 0.678922 | 2_1:+72089493 | Msa0222730:three_prime_UTR |
| ACAAGTAGGCAAATGGTCTG+GGG | 0.680323 | 2_1:+72089550 | Msa0222730:three_prime_UTR |
| GCGTCAAAATGTCTCCACAA+TGG | 0.680459 | 2_1:-72089115 | None:intergenic |
| CAGAATTCAGCATGATACGT+AGG | 0.680471 | 2_1:-72089774 | None:intergenic |
| CTCGGATTAGTGCTACACCA+AGG | 0.713270 | 2_1:+72088474 | Msa0222730:CDS |
| CATTTGGGAGATATATACCA+AGG | 0.716932 | 2_1:+72089445 | Msa0222730:three_prime_UTR |
| AAATCTGCGTGAAACCTGTG+TGG | 0.746608 | 2_1:-72087143 | None:intergenic |
| TGTGTGGTGGAAGCAGACAG+TGG | 0.760336 | 2_1:-72087127 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATCTCATTTTTATGTTA+TGG | + | chr2_1:72087467-72087486 | Msa0222730:intron | 15.0% |
| !!! | TTATTTTGGTTTTGTTAAAA+TGG | + | chr2_1:72087824-72087843 | Msa0222730:intron | 15.0% |
| !!! | TAAATATTGGTTTATCTACA+CGG | + | chr2_1:72087352-72087371 | Msa0222730:intron | 20.0% |
| !!! | TTTTGTTGAATAGAAGATTT+AGG | + | chr2_1:72087951-72087970 | Msa0222730:intron | 20.0% |
| !!! | AGCTATTTTGTATACATAAA+AGG | - | chr2_1:72088237-72088256 | None:intergenic | 20.0% |
| !! | CTCATGTTATTATTTACAAT+GGG | - | chr2_1:72088894-72088913 | None:intergenic | 20.0% |
| !! | TCTCATGTTATTATTTACAA+TGG | - | chr2_1:72088895-72088914 | None:intergenic | 20.0% |
| !!! | TTTAGATGTTAGTCTTTTTA+TGG | + | chr2_1:72089086-72089105 | Msa0222730:three_prime_UTR | 20.0% |
| !!! | ATTAATTTCAGTAGTTCTAT+AGG | + | chr2_1:72089735-72089754 | Msa0222730:three_prime_UTR | 20.0% |
| ! | GACTATTGAAAAAGAAAAGA+AGG | - | chr2_1:72087232-72087251 | None:intergenic | 25.0% |
| !!! | GATTATATAGCAATTTTAGC+TGG | - | chr2_1:72087453-72087472 | None:intergenic | 25.0% |
| ! | GAGAATGATATAAGCTAAAT+TGG | - | chr2_1:72087645-72087664 | None:intergenic | 25.0% |
| !!! | GTTTTGATTAAAAAAGTTGC+TGG | + | chr2_1:72087783-72087802 | Msa0222730:intron | 25.0% |
| ! | AATAAGTTGTTTATCCAAAC+AGG | + | chr2_1:72088210-72088229 | Msa0222730:intron | 25.0% |
| !! | CAAATTTGTTCAGTAATTCA+TGG | + | chr2_1:72088707-72088726 | Msa0222730:intron | 25.0% |
| ! | AAACTGCTTTACAATAATGT+GGG | - | chr2_1:72088924-72088943 | None:intergenic | 25.0% |
| ! | TAAACTGCTTTACAATAATG+TGG | - | chr2_1:72088925-72088944 | None:intergenic | 25.0% |
| ! | AACAAGATTGGGATTATTTA+AGG | + | chr2_1:72089032-72089051 | Msa0222730:CDS | 25.0% |
| !! | ATTGGGATTATTTAAGGTAA+TGG | + | chr2_1:72089038-72089057 | Msa0222730:exon | 25.0% |
| ! | ATCTAAACAAAAACTGTCTT+TGG | - | chr2_1:72089073-72089092 | None:intergenic | 25.0% |
| ! | AGTTCGATTGCAATTAAATT+TGG | + | chr2_1:72089178-72089197 | Msa0222730:three_prime_UTR | 25.0% |
| ! | AAATCTAAAAACAAACTTCG+AGG | - | chr2_1:72089243-72089262 | None:intergenic | 25.0% |
| !!! | TCGAAGTTTGTTTTTAGATT+TGG | + | chr2_1:72089242-72089261 | Msa0222730:three_prime_UTR | 25.0% |
| !!! | AAGTTTGTTTTTAGATTTGG+TGG | + | chr2_1:72089245-72089264 | Msa0222730:three_prime_UTR | 25.0% |
| ! | GTATGATCAGTAATTTATGT+TGG | + | chr2_1:72089704-72089723 | Msa0222730:three_prime_UTR | 25.0% |
| ! | ATAGATGAAATACCTTTTGG+TGG | - | chr2_1:72087209-72087228 | None:intergenic | 30.0% |
| ! | AGGATAGATGAAATACCTTT+TGG | - | chr2_1:72087212-72087231 | None:intergenic | 30.0% |
| ATGAAAACAGATGCAGAAAT+TGG | - | chr2_1:72087283-72087302 | None:intergenic | 30.0% | |
| ! | CGAGTTTCTGGATTAAATAT+TGG | + | chr2_1:72087339-72087358 | Msa0222730:intron | 30.0% |
| !! | AATAATCTGTGTTTTTGTGC+CGG | + | chr2_1:72087383-72087402 | Msa0222730:intron | 30.0% |
| !! | GTTGTTTTCAGAAGCAATTT+TGG | - | chr2_1:72087605-72087624 | None:intergenic | 30.0% |
| !!! | TGATTTGCTTGGACTTATTT+TGG | + | chr2_1:72087810-72087829 | Msa0222730:intron | 30.0% |
| ATCTCCATGATTATTGCTTT+CGG | + | chr2_1:72087862-72087881 | Msa0222730:intron | 30.0% | |
| !! | TAGAAGATTTAGGACCTTTT+TGG | + | chr2_1:72087961-72087980 | Msa0222730:intron | 30.0% |
| !!! | ATTTGTTTTGTGAGACTGTT+TGG | + | chr2_1:72088012-72088031 | Msa0222730:intron | 30.0% |
| !!! | TTTGTTTTGTGAGACTGTTT+GGG | + | chr2_1:72088013-72088032 | Msa0222730:intron | 30.0% |
| TAAGCTATTCTTGTGCAAAT+GGG | - | chr2_1:72088148-72088167 | None:intergenic | 30.0% | |
| ATAAGCTATTCTTGTGCAAA+TGG | - | chr2_1:72088149-72088168 | None:intergenic | 30.0% | |
| TATACATAAAAGGTCCTGTT+TGG | - | chr2_1:72088227-72088246 | None:intergenic | 30.0% | |
| ! | GGTCATCTTTTTCTTTTTGT+AGG | + | chr2_1:72088293-72088312 | Msa0222730:intron | 30.0% |
| ! | CTTTTTCTTTTTGTAGGTGA+TGG | + | chr2_1:72088299-72088318 | Msa0222730:intron | 30.0% |
| ! | TAATGATCAAGTTTGTTCCT+TGG | - | chr2_1:72088494-72088513 | None:intergenic | 30.0% |
| AGCTGACAAAAAGAAAATCA+AGG | + | chr2_1:72088601-72088620 | Msa0222730:CDS | 30.0% | |
| GTAATAACATGTACATACAC+TGG | + | chr2_1:72088805-72088824 | Msa0222730:intron | 30.0% | |
| !!! | TGTACATACACTGGTTTTTA+TGG | + | chr2_1:72088814-72088833 | Msa0222730:intron | 30.0% |
| TATCATATCCCTTCACAATA+GGG | - | chr2_1:72088860-72088879 | None:intergenic | 30.0% | |
| TTTGACGCAAAGTTAAATTC+CGG | + | chr2_1:72089130-72089149 | Msa0222730:three_prime_UTR | 30.0% | |
| CACAATAACAAAACACAATC+CGG | - | chr2_1:72089152-72089171 | None:intergenic | 30.0% | |
| ATGTGCTATGAACATAATTG+AGG | + | chr2_1:72089287-72089306 | Msa0222730:three_prime_UTR | 30.0% | |
| AATCTTGAGAATTAGGTAGA+TGG | - | chr2_1:72089369-72089388 | None:intergenic | 30.0% | |
| AGATGGTAATCTTGAGAATT+AGG | - | chr2_1:72089376-72089395 | None:intergenic | 30.0% | |
| CATATGGTTTAGCCTATAAA+TGG | + | chr2_1:72089617-72089636 | Msa0222730:three_prime_UTR | 30.0% | |
| CTTCATCTTCTACGATTCAA+TGG | + | chr2_1:72087181-72087200 | Msa0222730:exon | 35.0% | |
| TCTACTCGAATCAAATCTAC+CGG | - | chr2_1:72087405-72087424 | None:intergenic | 35.0% | |
| !!! | AGCAATTTTAGCTGGCATTA+AGG | - | chr2_1:72087445-72087464 | None:intergenic | 35.0% |
| AACACCGAAAGCAATAATCA+TGG | - | chr2_1:72087869-72087888 | None:intergenic | 35.0% | |
| ! | AATGAAGCATCCAGAGAAAT+GGG | - | chr2_1:72087901-72087920 | None:intergenic | 35.0% |
| ! | AAATGAAGCATCCAGAGAAA+TGG | - | chr2_1:72087902-72087921 | None:intergenic | 35.0% |
| !! | TCTGGATGCTTCATTTTTCT+GGG | + | chr2_1:72087906-72087925 | Msa0222730:intron | 35.0% |
| !! | GATTTAGGACCTTTTTGGAT+TGG | + | chr2_1:72087966-72087985 | Msa0222730:intron | 35.0% |
| TGAAAGAAGCCAATCCAAAA+AGG | - | chr2_1:72087978-72087997 | None:intergenic | 35.0% | |
| CTATCCCTAGATAAAGTCTT+TGG | - | chr2_1:72088440-72088459 | None:intergenic | 35.0% | |
| CAAAGACTTTATCTAGGGAT+AGG | + | chr2_1:72088438-72088457 | Msa0222730:CDS | 35.0% | |
| ATAGGAATCCAAAATACCCT+CGG | + | chr2_1:72088456-72088475 | Msa0222730:CDS | 35.0% | |
| GATTGAAGACAACAACACTT+TGG | + | chr2_1:72088559-72088578 | Msa0222730:CDS | 35.0% | |
| ! | GATGTCGTACATTTTCTTCA+CGG | - | chr2_1:72088630-72088649 | None:intergenic | 35.0% |
| ! | GATCAAGGTGTTAACTTTCT+TGG | - | chr2_1:72088657-72088676 | None:intergenic | 35.0% |
| AGAAAGTTAACACCTTGATC+AGG | + | chr2_1:72088657-72088676 | Msa0222730:CDS | 35.0% | |
| CAGAAAAGATCACAACCTAA+AGG | - | chr2_1:72088687-72088706 | None:intergenic | 35.0% | |
| GTATCATATCCCTTCACAAT+AGG | - | chr2_1:72088861-72088880 | None:intergenic | 35.0% | |
| ! | AACTTTGCATGTTTTCTTGC+AGG | + | chr2_1:72088946-72088965 | Msa0222730:intron | 35.0% |
| ! | ACATCCAAAGCATCATAATC+AGG | - | chr2_1:72089008-72089027 | None:intergenic | 35.0% |
| TTGGATGTTGCAAACAAGAT+TGG | + | chr2_1:72089020-72089039 | Msa0222730:CDS | 35.0% | |
| TGGATGTTGCAAACAAGATT+GGG | + | chr2_1:72089021-72089040 | Msa0222730:CDS | 35.0% | |
| ! | GGATTATTTAAGGTAATGGC+TGG | + | chr2_1:72089042-72089061 | Msa0222730:exon | 35.0% |
| ! | TTTTATGGTGATCACCATTG+TGG | + | chr2_1:72089101-72089120 | Msa0222730:three_prime_UTR | 35.0% |
| CAAGATTACCATCTCTTAAG+AGG | + | chr2_1:72089382-72089401 | Msa0222730:three_prime_UTR | 35.0% | |
| AACAAAGTCCTCTTAAGAGA+TGG | - | chr2_1:72089393-72089412 | None:intergenic | 35.0% | |
| CATTTGGGAGATATATACCA+AGG | + | chr2_1:72089445-72089464 | Msa0222730:three_prime_UTR | 35.0% | |
| !! | ATGAGGTGATTGTTTTACCT+TGG | - | chr2_1:72089522-72089541 | None:intergenic | 35.0% |
| TTACGATGTACTTGCACATA+TGG | + | chr2_1:72089601-72089620 | Msa0222730:three_prime_UTR | 35.0% | |
| TAGCCTATAAATGGAACACT+TGG | + | chr2_1:72089626-72089645 | Msa0222730:three_prime_UTR | 35.0% | |
| !!! | TGTGGTTCTTTTAAAACTCC+TGG | + | chr2_1:72089666-72089685 | Msa0222730:three_prime_UTR | 35.0% |
| TCACGCAGATTTCACATCTA+AGG | + | chr2_1:72087154-72087173 | Msa0222730:five_prime_UTR | 40.0% | |
| CACGCAGATTTCACATCTAA+GGG | + | chr2_1:72087155-72087174 | Msa0222730:five_prime_UTR | 40.0% | |
| ACGCAGATTTCACATCTAAG+GGG | + | chr2_1:72087156-72087175 | Msa0222730:five_prime_UTR | 40.0% | |
| !! | TTGCTGGAACATGATTTGCT+TGG | + | chr2_1:72087799-72087818 | Msa0222730:intron | 40.0% |
| TTAGAGTCATCCCATTTCTC+TGG | + | chr2_1:72087888-72087907 | Msa0222730:intron | 40.0% | |
| !! | CTCTGGATGCTTCATTTTTC+TGG | + | chr2_1:72087905-72087924 | Msa0222730:intron | 40.0% |
| GCTTCTTTCAGCTTATCTAC+CGG | + | chr2_1:72087988-72088007 | Msa0222730:intron | 40.0% | |
| CAGTCTCACAAAACAAATGC+CGG | - | chr2_1:72088010-72088029 | None:intergenic | 40.0% | |
| ATGTTTCCACGAGTTACGTT+GGG | - | chr2_1:72088092-72088111 | None:intergenic | 40.0% | |
| TTGCTGCATGAAATGTGACT+AGG | + | chr2_1:72088272-72088291 | Msa0222730:intron | 40.0% | |
| CTTCTTTGCCTTCTTCTTGA+TGG | - | chr2_1:72088390-72088409 | None:intergenic | 40.0% | |
| AGAAGAAGGCAAAGAAGATC+AGG | + | chr2_1:72088393-72088412 | Msa0222730:CDS | 40.0% | |
| TAGATAAAGTCTTTGGCCTG+TGG | - | chr2_1:72088433-72088452 | None:intergenic | 40.0% | |
| ACAGGCCAAAGACTTTATCT+AGG | + | chr2_1:72088432-72088451 | Msa0222730:CDS | 40.0% | |
| CAGGCCAAAGACTTTATCTA+GGG | + | chr2_1:72088433-72088452 | Msa0222730:CDS | 40.0% | |
| GAAGAAAATGTACGACATCC+AGG | + | chr2_1:72088631-72088650 | Msa0222730:CDS | 40.0% | |
| !! | AGACTTGTTGAGTTGAATGC+TGG | + | chr2_1:72088737-72088756 | Msa0222730:intron | 40.0% |
| ATCAGGTGTCAACCTTACAT+AGG | - | chr2_1:72088991-72089010 | None:intergenic | 40.0% | |
| GACACCTGATTATGATGCTT+TGG | + | chr2_1:72089001-72089020 | Msa0222730:CDS | 40.0% | |
| GAGAATTAGGTAGATGGCTT+AGG | - | chr2_1:72089363-72089382 | None:intergenic | 40.0% | |
| AAGATCTGTGCTGTCACATT+TGG | + | chr2_1:72089429-72089448 | Msa0222730:three_prime_UTR | 40.0% | |
| AGATCTGTGCTGTCACATTT+GGG | + | chr2_1:72089430-72089449 | Msa0222730:three_prime_UTR | 40.0% | |
| ! | ATGAGGTGATCGTTTTACCT+TGG | - | chr2_1:72089465-72089484 | None:intergenic | 40.0% |
| CCTACTTGCTTAGCATTATG+AGG | - | chr2_1:72089482-72089501 | None:intergenic | 40.0% | |
| CCTCATAATGCTAAGCAAGT+AGG | + | chr2_1:72089479-72089498 | Msa0222730:three_prime_UTR | 40.0% | |
| ATGCTAAGCAAGTAGGCAAA+AGG | + | chr2_1:72089486-72089505 | Msa0222730:three_prime_UTR | 40.0% | |
| CCTACTTGTTCAGCATTATG+AGG | - | chr2_1:72089539-72089558 | None:intergenic | 40.0% | |
| CCTCATAATGCTGAACAAGT+AGG | + | chr2_1:72089536-72089555 | Msa0222730:three_prime_UTR | 40.0% | |
| ATGCTGAACAAGTAGGCAAA+TGG | + | chr2_1:72089543-72089562 | Msa0222730:three_prime_UTR | 40.0% | |
| AACAAGTAGGCAAATGGTCT+GGG | + | chr2_1:72089549-72089568 | Msa0222730:three_prime_UTR | 40.0% | |
| CAGCCAAGTGTTCCATTTAT+AGG | - | chr2_1:72089632-72089651 | None:intergenic | 40.0% | |
| ! | GCTGAGCTAGTTTGAAAATG+TGG | + | chr2_1:72089648-72089667 | Msa0222730:three_prime_UTR | 40.0% |
| TACGTAGTATGACAACATCC+AGG | - | chr2_1:72089687-72089706 | None:intergenic | 40.0% | |
| CAGAATTCAGCATGATACGT+AGG | - | chr2_1:72089777-72089796 | None:intergenic | 40.0% | |
| CTACGTATCATGCTGAATTC+TGG | + | chr2_1:72089775-72089794 | Msa0222730:three_prime_UTR | 40.0% | |
| AAATCTGCGTGAAACCTGTG+TGG | - | chr2_1:72087146-72087165 | None:intergenic | 45.0% | |
| GATTCAATGGCTCCACCAAA+AGG | + | chr2_1:72087194-72087213 | Msa0222730:exon | 45.0% | |
| TGTTTCCACGAGTTACGTTG+GGG | - | chr2_1:72088091-72088110 | None:intergenic | 45.0% | |
| GATGTTTCCACGAGTTACGT+TGG | - | chr2_1:72088093-72088112 | None:intergenic | 45.0% | |
| TGCAAAGAAGACCGATCCAA+AGG | + | chr2_1:72088322-72088341 | Msa0222730:CDS | 45.0% | |
| GGACAACTGTTACATTCCAC+AGG | + | chr2_1:72088414-72088433 | Msa0222730:CDS | 45.0% | |
| !!! | GCACTAATCCGAGGGTATTT+TGG | - | chr2_1:72088467-72088486 | None:intergenic | 45.0% |
| TTGGTGTAGCACTAATCCGA+GGG | - | chr2_1:72088475-72088494 | None:intergenic | 45.0% | |
| !! | ATTGCTGACTCAGTTGTGAG+CGG | - | chr2_1:72088533-72088552 | None:intergenic | 45.0% |
| AGGTGTTAACTTTCTTGGCC+TGG | - | chr2_1:72088652-72088671 | None:intergenic | 45.0% | |
| CCTAAAGGCTTACCTGATCA+AGG | - | chr2_1:72088672-72088691 | None:intergenic | 45.0% | |
| CCTTGATCAGGTAAGCCTTT+AGG | + | chr2_1:72088669-72088688 | Msa0222730:intron | 45.0% | |
| ATGGCACACTGTTATGCTCA+CGG | + | chr2_1:72088833-72088852 | Msa0222730:intron | 45.0% | |
| CAACCTTACATAGGCCTTCT+TGG | - | chr2_1:72088982-72089001 | None:intergenic | 45.0% | |
| GCGTCAAAATGTCTCCACAA+TGG | - | chr2_1:72089118-72089137 | None:intergenic | 45.0% | |
| ! | TTAGGCTTAGGCTGAGTTGA+TGG | - | chr2_1:72089339-72089358 | None:intergenic | 45.0% |
| TAGGTAGATGGCTTAGGCTT+AGG | - | chr2_1:72089357-72089376 | None:intergenic | 45.0% | |
| GAACAAGTAGGCAAATGGTC+TGG | + | chr2_1:72089548-72089567 | Msa0222730:three_prime_UTR | 45.0% | |
| ACAAGTAGGCAAATGGTCTG+GGG | + | chr2_1:72089550-72089569 | Msa0222730:three_prime_UTR | 45.0% | |
| TCACTGCTTGCACGAGTTTC+TGG | + | chr2_1:72087327-72087346 | Msa0222730:intron | 50.0% | |
| GTTTCCACGAGTTACGTTGG+GGG | - | chr2_1:72088090-72088109 | None:intergenic | 50.0% | |
| CACTGCTTTCGCAGCTTTCA+AGG | - | chr2_1:72088354-72088373 | None:intergenic | 50.0% | |
| ! | AGGCACTGCCATCAAGAAGA+AGG | + | chr2_1:72088379-72088398 | Msa0222730:CDS | 50.0% |
| ! | CTTGGTGTAGCACTAATCCG+AGG | - | chr2_1:72088476-72088495 | None:intergenic | 50.0% |
| !! | CTCGGATTAGTGCTACACCA+AGG | + | chr2_1:72088474-72088493 | Msa0222730:CDS | 50.0% |
| TGGCACACTGTTATGCTCAC+GGG | + | chr2_1:72088834-72088853 | Msa0222730:intron | 50.0% | |
| ! | ATGTTTTCTTGCAGGCCCGA+TGG | + | chr2_1:72088954-72088973 | Msa0222730:intron | 50.0% |
| !! | ATAGGCCTTCTTGGTGCCAT+CGG | - | chr2_1:72088973-72088992 | None:intergenic | 50.0% |
| GCACCAAGAAGGCCTATGTA+AGG | + | chr2_1:72088976-72088995 | Msa0222730:CDS | 50.0% | |
| GATGGCTTAGGCTTAGGCTT+AGG | - | chr2_1:72089351-72089370 | None:intergenic | 50.0% | |
| GCAAGTAGGCAAAAGGTCTG+CGG | + | chr2_1:72089493-72089512 | Msa0222730:three_prime_UTR | 50.0% | |
| CAAAAGGTCTGCGGTAACCA+AGG | + | chr2_1:72089502-72089521 | Msa0222730:three_prime_UTR | 50.0% | |
| ! | CAAATGGTCTGGGGTAACTG+AGG | + | chr2_1:72089559-72089578 | Msa0222730:three_prime_UTR | 50.0% |
| !! | GTAACTGAGGTTGGTGGTCA+AGG | + | chr2_1:72089572-72089591 | Msa0222730:three_prime_UTR | 50.0% |
| ! | TGTGTGGTGGAAGCAGACAG+TGG | - | chr2_1:72087130-72087149 | None:intergenic | 55.0% |
| ACTGTCTGCTTCCACCACAC+AGG | + | chr2_1:72087129-72087148 | Msa0222730:five_prime_UTR | 55.0% | |
| TCTGCGTGAAACCTGTGTGG+TGG | - | chr2_1:72087143-72087162 | None:intergenic | 55.0% | |
| AGTTCCCCCAACGTAACTCG+TGG | + | chr2_1:72088083-72088102 | Msa0222730:intron | 55.0% | |
| ! | GAAGACCGATCCAAAGGCAC+AGG | + | chr2_1:72088328-72088347 | Msa0222730:CDS | 55.0% |
| CAAGGCCTGTGCCTTTGGAT+CGG | - | chr2_1:72088336-72088355 | None:intergenic | 55.0% | |
| GCTTTCAAGGCCTGTGCCTT+TGG | - | chr2_1:72088341-72088360 | None:intergenic | 55.0% | |
| GCTGCGAAAGCAGTGAAGTC+AGG | + | chr2_1:72088359-72088378 | Msa0222730:CDS | 55.0% | |
| CTCACGGGCCCTATTGTGAA+GGG | + | chr2_1:72088849-72088868 | Msa0222730:intron | 55.0% | |
| !! | TAGGCCTTCTTGGTGCCATC+GGG | - | chr2_1:72088972-72088991 | None:intergenic | 55.0% |
| ! | TGGTCTGGGGTAACTGAGGT+TGG | + | chr2_1:72089563-72089582 | Msa0222730:three_prime_UTR | 55.0% |
| ! | TCTGGGGTAACTGAGGTTGG+TGG | + | chr2_1:72089566-72089585 | Msa0222730:three_prime_UTR | 55.0% |
| GCTCACGGGCCCTATTGTGA+AGG | + | chr2_1:72088848-72088867 | Msa0222730:intron | 60.0% | |
| CAGGCCCGATGGCACCAAGA+AGG | + | chr2_1:72088965-72088984 | Msa0222730:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 72087123 | 72089799 | 72087123 | ID=Msa0222730;Name=Msa0222730 |
| chr2_1 | mRNA | 72087123 | 72089799 | 72087123 | ID=Msa0222730-mRNA-1;Parent=Msa0222730;Name=Msa0222730-mRNA-1;_AED=0.01;_eAED=0.01;_QI=77|1|1|1|1|1|3|747|154 |
| chr2_1 | exon | 72087123 | 72087215 | 72087123 | ID=Msa0222730-mRNA-1:exon:20766;Parent=Msa0222730-mRNA-1 |
| chr2_1 | exon | 72088315 | 72088678 | 72088315 | ID=Msa0222730-mRNA-1:exon:20767;Parent=Msa0222730-mRNA-1 |
| chr2_1 | exon | 72088968 | 72089799 | 72088968 | ID=Msa0222730-mRNA-1:exon:20768;Parent=Msa0222730-mRNA-1 |
| chr2_1 | five_prime_UTR | 72087123 | 72087199 | 72087123 | ID=Msa0222730-mRNA-1:five_prime_utr;Parent=Msa0222730-mRNA-1 |
| chr2_1 | CDS | 72087200 | 72087215 | 72087200 | ID=Msa0222730-mRNA-1:cds;Parent=Msa0222730-mRNA-1 |
| chr2_1 | CDS | 72088315 | 72088678 | 72088315 | ID=Msa0222730-mRNA-1:cds;Parent=Msa0222730-mRNA-1 |
| chr2_1 | CDS | 72088968 | 72089052 | 72088968 | ID=Msa0222730-mRNA-1:cds;Parent=Msa0222730-mRNA-1 |
| chr2_1 | three_prime_UTR | 72089053 | 72089799 | 72089053 | ID=Msa0222730-mRNA-1:three_prime_utr;Parent=Msa0222730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
