Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0627100 | AES86577.1 | 71.094 | 128 | 11 | 2 | 15 | 116 | 234 | 361 | 5.39e-40 | 147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0627100 | G7JGY4 | 71.094 | 128 | 11 | 2 | 15 | 116 | 234 | 361 | 2.57e-40 | 147 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0627100 | Msa1253510 | 0.804088 | 2.554999e-49 | -8.615850e-47 |
| Msa0328810 | Msa0627100 | 0.820470 | 6.743258e-53 | -8.615850e-47 |
| Msa0340470 | Msa0627100 | 0.809930 | 1.483173e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0627100 | MtrunA17_Chr4g0003291 | 71.094 | 128 | 11 | 2 | 15 | 116 | 234 | 361 | 4.96e-44 | 147 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 122 sgRNAs with CRISPR-Local
Find 296 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGTGTTCCTTTCTTCTT+AGG | 0.082097 | 4_3:+7180413 | None:intergenic |
| TATTGTTGCCTTTGATTTAA+TGG | 0.091455 | 4_3:-7183088 | Msa0627100:five_prime_UTR |
| TTCAACTGGTTCTTCCTCTT+TGG | 0.164665 | 4_3:+7179384 | None:intergenic |
| CATTTAAGTTTCTATGGTTT+TGG | 0.173175 | 4_3:-7183330 | Msa0627100:five_prime_UTR |
| GTACTTCTTCAATTGTCTTT+TGG | 0.222954 | 4_3:+7180343 | None:intergenic |
| TCAACTGGTTCTTCCTCTTT+GGG | 0.249140 | 4_3:+7179385 | None:intergenic |
| TGCAGGTGGTGGGGTTGTTT+TGG | 0.254402 | 4_3:+7180229 | None:intergenic |
| GTTGGAACAGATTGCGTTAC+TGG | 0.254941 | 4_3:-7182826 | Msa0627100:five_prime_UTR |
| TTAGAGGATTTCTAAGTCTA+TGG | 0.269614 | 4_3:-7182993 | Msa0627100:five_prime_UTR |
| GTTTCACATTTAAGTTTCTA+TGG | 0.274492 | 4_3:-7183336 | Msa0627100:five_prime_UTR |
| TTTGTTTAAACGCTTATATA+TGG | 0.301351 | 4_3:-7183404 | Msa0627100:five_prime_UTR |
| GATTCCCAGAATGGTTATTC+AGG | 0.307877 | 4_3:+7180321 | None:intergenic |
| ACGAGTATACGGTTGATATA+TGG | 0.318993 | 4_3:-7182960 | Msa0627100:five_prime_UTR |
| AAGTACCTGAATAACCATTC+TGG | 0.324491 | 4_3:-7180326 | Msa0627100:five_prime_UTR |
| GCTCAGCTTGTGCAGGTGGT+GGG | 0.331053 | 4_3:+7180219 | None:intergenic |
| CTGACATATCAGAGTTTGAT+TGG | 0.338629 | 4_3:-7180298 | Msa0627100:five_prime_UTR |
| AATGTTGAAGATATCATTAA+TGG | 0.339503 | 4_3:-7179271 | Msa0627100:CDS |
| AGAAATATCGATGGCGGAAC+TGG | 0.347707 | 4_3:-7179586 | Msa0627100:CDS |
| GGCTCAGCTTGTGCAGGTGG+TGG | 0.361451 | 4_3:+7180218 | None:intergenic |
| TTTGATTTATGGGTATTTAG+AGG | 0.361936 | 4_3:-7183009 | Msa0627100:five_prime_UTR |
| TCGATATTTCTTCCACTTTG+AGG | 0.365180 | 4_3:+7179598 | None:intergenic |
| AAACTTAAATGTGAAACATT+TGG | 0.365820 | 4_3:+7183342 | None:intergenic |
| TGATCGCCTTGGTGTCTTGC+CGG | 0.367028 | 4_3:+7180271 | None:intergenic |
| ATTTCTAAGTCTATGGGTTA+TGG | 0.375932 | 4_3:-7182986 | Msa0627100:five_prime_UTR |
| TCAGAGTTTGATTGGGGAAC+CGG | 0.377737 | 4_3:-7180290 | Msa0627100:five_prime_UTR |
| TATTGCAAAGATTCACGAAA+TGG | 0.386661 | 4_3:-7182757 | Msa0627100:five_prime_UTR |
| GGTTATGGTGGACGAGTATA+CGG | 0.392883 | 4_3:-7182971 | Msa0627100:five_prime_UTR |
| CGAGTATACGGTTGATATAT+GGG | 0.394457 | 4_3:-7182959 | Msa0627100:five_prime_UTR |
| TCGTGAATCTTTGCAATAGT+TGG | 0.395158 | 4_3:+7182762 | None:intergenic |
| GAACGATAATCAATATCATC+TGG | 0.398645 | 4_3:+7183039 | None:intergenic |
| TTCGGAGGCTCAGCTTGTGC+AGG | 0.403009 | 4_3:+7180212 | None:intergenic |
| GATGAAAAGCAAACAATTCA+AGG | 0.406252 | 4_3:-7179226 | Msa0627100:CDS |
| GCTCTACTTGTTTGTGCCAT+GGG | 0.411028 | 4_3:+7182695 | None:intergenic |
| ATTGAAGACCGCCTCTACTA+AGG | 0.411533 | 4_3:+7183158 | None:intergenic |
| AGAGACCAGTTTCTTCCAAT+TGG | 0.416258 | 4_3:+7182131 | None:intergenic |
| GAGGCAGCCTTACTACAAAA+AGG | 0.416722 | 4_3:+7183195 | None:intergenic |
| TCCTACCAATTGGAAGAAAC+TGG | 0.418932 | 4_3:-7182136 | Msa0627100:intron |
| AACTCTCTGCTCCTACCAAT+TGG | 0.422435 | 4_3:-7182146 | Msa0627100:five_prime_UTR |
| AATACAAAGTGCAGTCATCT+TGG | 0.424763 | 4_3:-7182927 | Msa0627100:five_prime_UTR |
| TTGGTGTTCCTTTCTTCTTA+GGG | 0.429693 | 4_3:+7180414 | None:intergenic |
| TGACATATCAGAGTTTGATT+GGG | 0.437668 | 4_3:-7180297 | Msa0627100:five_prime_UTR |
| CTCAGCTTGTGCAGGTGGTG+GGG | 0.439388 | 4_3:+7180220 | None:intergenic |
| TGCTCTACTTGTTTGTGCCA+TGG | 0.439938 | 4_3:+7182694 | None:intergenic |
| TTCAGAGGAAGCCAAGGAAA+AGG | 0.442265 | 4_3:-7180126 | Msa0627100:five_prime_UTR |
| AGAAACATCTGTGGCGAAAC+CGG | 0.445566 | 4_3:-7179455 | Msa0627100:CDS |
| CAATGGAGCTATTCACTGGT+TGG | 0.445876 | 4_3:-7183139 | Msa0627100:five_prime_UTR |
| TCTCACTCAGAGCTAATGAA+TGG | 0.447110 | 4_3:-7183245 | Msa0627100:five_prime_UTR |
| TTAGTAGAGGCGGTCTTCAA+TGG | 0.454485 | 4_3:-7183156 | Msa0627100:five_prime_UTR |
| ACTACTGATGATACCATTGA+TGG | 0.457074 | 4_3:-7182886 | Msa0627100:five_prime_UTR |
| GAACTTATCTCTTCTCCAGT+TGG | 0.457485 | 4_3:+7180365 | None:intergenic |
| TGATGAACAAGTGAAGAAAA+TGG | 0.458019 | 4_3:-7179203 | Msa0627100:CDS |
| AGTACCTGAATAACCATTCT+GGG | 0.461208 | 4_3:-7180325 | Msa0627100:five_prime_UTR |
| AGCTGTACTTCCAACTCAAC+TGG | 0.465339 | 4_3:+7179501 | None:intergenic |
| TGATATTGATTATCGTTCTA+CGG | 0.471118 | 4_3:-7183034 | Msa0627100:five_prime_UTR |
| TGTCACTGAAAAGCCGCAAT+TGG | 0.475750 | 4_3:-7179626 | Msa0627100:CDS |
| TTTCCTTTCCATTAAATCAA+AGG | 0.478785 | 4_3:+7183080 | None:intergenic |
| AAACGTAGTCGAAAATCATC+TGG | 0.479428 | 4_3:-7180188 | Msa0627100:five_prime_UTR |
| ATTGACGTTATCAGCATCAC+TGG | 0.483149 | 4_3:+7180078 | None:intergenic |
| CAATCAAACTCTGATATGTC+AGG | 0.483410 | 4_3:+7180299 | None:intergenic |
| AGGTATTTGTCTATGAAATC+CGG | 0.492203 | 4_3:+7183371 | None:intergenic |
| TAGAGGATTTCTAAGTCTAT+GGG | 0.497173 | 4_3:-7182992 | Msa0627100:five_prime_UTR |
| GGAGCAACGAAAACGATCTC+AGG | 0.499081 | 4_3:+7180386 | None:intergenic |
| AGTTACTAGCAGGAGAAATC+CGG | 0.501040 | 4_3:-7179331 | Msa0627100:intron |
| TGTGAAACATTTGGAGGGAA+AGG | 0.501916 | 4_3:+7183351 | None:intergenic |
| CGAATCAAAAGACGATTACT+TGG | 0.504732 | 4_3:-7183301 | Msa0627100:five_prime_UTR |
| CTAATCCTTGATGATCGCCT+TGG | 0.506450 | 4_3:+7180260 | None:intergenic |
| TACAGGGGAAACACCATCAA+TGG | 0.508026 | 4_3:+7182873 | None:intergenic |
| CTCACTCAGAGCTAATGAAT+GGG | 0.511679 | 4_3:-7183244 | Msa0627100:five_prime_UTR |
| AAAATCATCTGGTTCAAAGA+AGG | 0.513211 | 4_3:-7180177 | Msa0627100:five_prime_UTR |
| TCTTCAATGGAGCTATTCAC+TGG | 0.513798 | 4_3:-7183143 | Msa0627100:five_prime_UTR |
| AACAGATTGCGTTACTGGAT+TGG | 0.516231 | 4_3:-7182821 | Msa0627100:five_prime_UTR |
| TCCACAGAAAGTTGTTCCAC+CGG | 0.516693 | 4_3:+7179436 | None:intergenic |
| CAGTTCTTCCCTAAGAAGAA+AGG | 0.518232 | 4_3:-7180422 | Msa0627100:five_prime_UTR |
| TCAGAGGAAGCCAAGGAAAA+GGG | 0.519779 | 4_3:-7180125 | Msa0627100:five_prime_UTR |
| AGGGGAGGCACCAGTTGAGT+TGG | 0.522143 | 4_3:-7179511 | Msa0627100:CDS |
| AATTTAAAGGTTCATGTAGA+GGG | 0.524355 | 4_3:-7183443 | Msa0627100:five_prime_UTR |
| GGTAATTAAGCAAAGTAATG+TGG | 0.531038 | 4_3:-7180029 | Msa0627100:exon |
| ACAGATGTTTCTTCCACTTG+AGG | 0.531202 | 4_3:+7179466 | None:intergenic |
| TTGCCTTTGATTTAATGGAA+AGG | 0.533360 | 4_3:-7183083 | Msa0627100:five_prime_UTR |
| ATCAAAAGACGATTACTTGG+TGG | 0.533471 | 4_3:-7183298 | Msa0627100:five_prime_UTR |
| AGTCTTTGCTTTCACTCCCA+TGG | 0.535002 | 4_3:-7182711 | Msa0627100:five_prime_UTR |
| TTGAAGACCGCCTCTACTAA+GGG | 0.537668 | 4_3:+7183159 | None:intergenic |
| CAATTTAAAGGTTCATGTAG+AGG | 0.537697 | 4_3:-7183444 | Msa0627100:five_prime_UTR |
| CTTAAATGTGAAACATTTGG+AGG | 0.539043 | 4_3:+7183345 | None:intergenic |
| ATATGTCAGGATTCCCAGAA+TGG | 0.543833 | 4_3:+7180312 | None:intergenic |
| TGTCTATGAAATCCGGTGGA+TGG | 0.546054 | 4_3:+7183378 | None:intergenic |
| GGAGGCTCAGCTTGTGCAGG+TGG | 0.548233 | 4_3:+7180215 | None:intergenic |
| TTCACGAAATGGATTCCGAT+TGG | 0.548703 | 4_3:-7182746 | Msa0627100:five_prime_UTR |
| AACTCCTTCAGAGGAAGCCA+AGG | 0.553718 | 4_3:-7180132 | Msa0627100:five_prime_UTR |
| CTCTACTAAGGGATAATCAA+AGG | 0.556603 | 4_3:+7183170 | None:intergenic |
| TAAGGGATAATCAAAGGAAG+AGG | 0.560601 | 4_3:+7183176 | None:intergenic |
| ACCGGTGGAACAACTTTCTG+TGG | 0.561981 | 4_3:-7179437 | Msa0627100:CDS |
| CTTTGATTATCCCTTAGTAG+AGG | 0.564980 | 4_3:-7183169 | Msa0627100:five_prime_UTR |
| ACTCTGTATACATAGCCAAT+CGG | 0.573189 | 4_3:+7182731 | None:intergenic |
| AACGATAATCAATATCATCT+GGG | 0.573852 | 4_3:+7183040 | None:intergenic |
| AGACACCAAGGCGATCATCA+AGG | 0.592892 | 4_3:-7180265 | Msa0627100:five_prime_UTR |
| TATATATGGAATCCATCCAC+CGG | 0.596418 | 4_3:-7183390 | Msa0627100:five_prime_UTR |
| ATTAAGCAAAGTAATGTGGA+AGG | 0.597226 | 4_3:-7180025 | Msa0627100:intron |
| TCTAAGTCTATGGGTTATGG+TGG | 0.598732 | 4_3:-7182983 | Msa0627100:five_prime_UTR |
| TTAAATGTGAAACATTTGGA+GGG | 0.599802 | 4_3:+7183346 | None:intergenic |
| ACCAGTTTCTTCCAATTGGT+AGG | 0.602521 | 4_3:+7182135 | None:intergenic |
| GACATATCAGAGTTTGATTG+GGG | 0.603872 | 4_3:-7180296 | Msa0627100:five_prime_UTR |
| TTTCGACTACGTTTCTTCGG+AGG | 0.606353 | 4_3:+7180197 | None:intergenic |
| GAGCAGAGAGTTCAACAGAC+AGG | 0.608993 | 4_3:+7182157 | None:intergenic |
| TGATTATCCCTTAGTAGAGG+CGG | 0.612867 | 4_3:-7183166 | Msa0627100:five_prime_UTR |
| TAATCAATATCATCTGGGAG+AGG | 0.613479 | 4_3:+7183045 | None:intergenic |
| AACAAAGATTGACGATGCAG+AGG | 0.627736 | 4_3:-7180050 | Msa0627100:five_prime_UTR |
| TGAAACTGAAACTCCTTCAG+AGG | 0.634291 | 4_3:-7180141 | Msa0627100:five_prime_UTR |
| TGAATTGGAAAAGCCTCAAG+TGG | 0.640871 | 4_3:-7179479 | Msa0627100:intron |
| TATTTGTCTATGAAATCCGG+TGG | 0.647593 | 4_3:+7183374 | None:intergenic |
| CAAAGTGGAAGAAATATCGA+TGG | 0.648406 | 4_3:-7179595 | Msa0627100:CDS |
| GCAGGAGAAATCCGGCGCAG+AGG | 0.652200 | 4_3:-7179323 | Msa0627100:intron |
| GGGGAACCGGCAAGACACCA+AGG | 0.658623 | 4_3:-7180277 | Msa0627100:five_prime_UTR |
| CAATTGGAAAAGCCTCAAAG+TGG | 0.660142 | 4_3:-7179610 | Msa0627100:CDS |
| AACATCTGTGGCGAAACCGG+TGG | 0.663020 | 4_3:-7179452 | Msa0627100:CDS |
| TAATGAATGGGAAGAAATCG+TGG | 0.669771 | 4_3:-7183232 | Msa0627100:five_prime_UTR |
| TGGTTCAAAGAAGGATGACA+AGG | 0.673955 | 4_3:-7180168 | Msa0627100:five_prime_UTR |
| TTGACGTTATCAGCATCACT+GGG | 0.676786 | 4_3:+7180079 | None:intergenic |
| AGTGGAAGAAATATCGATGG+CGG | 0.684152 | 4_3:-7179592 | Msa0627100:CDS |
| TCAAGTGGAAGAAACATCTG+TGG | 0.700064 | 4_3:-7179464 | Msa0627100:CDS |
| TCCGGCGCAGAGGAAAACGA+AGG | 0.703991 | 4_3:-7179313 | Msa0627100:CDS |
| TTGGTGAGATATGATGACAA+AGG | 0.738918 | 4_3:-7182802 | Msa0627100:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATAAATATCTAGAAAA+CGG | + | chr4_3:7179994-7180013 | None:intergenic | 10.0% |
| !! | AAGCTAATAATAAAAAATAA+AGG | + | chr4_3:7180791-7180810 | None:intergenic | 10.0% |
| !!! | TAATTATCTTTTTTTTTTGA+AGG | - | chr4_3:7180971-7180990 | Msa0627100:intron | 10.0% |
| !!! | TTTTTTATTTTTTGTTTTTG+TGG | - | chr4_3:7181389-7181408 | Msa0627100:intron | 10.0% |
| !!! | TTTTTATTTTTTGTTTTTGT+GGG | - | chr4_3:7181390-7181409 | Msa0627100:intron | 10.0% |
| !!! | GTAAAATGTTTATGTTTTTT+TGG | - | chr4_3:7180090-7180109 | Msa0627100:five_prime_UTR | 15.0% |
| !! | ACTATTTGTAATATGTTTAT+TGG | - | chr4_3:7180116-7180135 | Msa0627100:five_prime_UTR | 15.0% |
| !!! | ATTCAATTGTTCATTTTTTT+AGG | - | chr4_3:7180846-7180865 | Msa0627100:intron | 15.0% |
| !!! | TTCAATTGTTCATTTTTTTA+GGG | - | chr4_3:7180847-7180866 | Msa0627100:intron | 15.0% |
| !! | TACTTGTAAAAAAACAAAAT+CGG | - | chr4_3:7181142-7181161 | Msa0627100:intron | 15.0% |
| !!! | TTTTGAACTTTTTGTTTTTT+TGG | - | chr4_3:7181337-7181356 | Msa0627100:intron | 15.0% |
| !!! | TTTGAACTTTTTGTTTTTTT+GGG | - | chr4_3:7181338-7181357 | Msa0627100:intron | 15.0% |
| !! | TTTGTTTAAACGCTTATATA+TGG | - | chr4_3:7179235-7179254 | Msa0627100:CDS | 20.0% |
| !! | AAACTTAAATGTGAAACATT+TGG | + | chr4_3:7179300-7179319 | None:intergenic | 20.0% |
| !!! | ATTTAAGTTTCTATGGTTTT+GGG | - | chr4_3:7179310-7179329 | Msa0627100:CDS | 20.0% |
| !! | AAAAGTTTATTCATACTTGA+TGG | - | chr4_3:7180369-7180388 | Msa0627100:five_prime_UTR | 20.0% |
| !!! | TTCAATTGTTCATGTTTTAT+AGG | - | chr4_3:7180431-7180450 | Msa0627100:intron | 20.0% |
| !!! | TCAATTGTTCATGTTTTATA+GGG | - | chr4_3:7180432-7180451 | Msa0627100:intron | 20.0% |
| !! | TGAAGCTAATAAAAAAATCA+AGG | + | chr4_3:7180669-7180688 | None:intergenic | 20.0% |
| !! | TAATGTTATGAAGAATTTAG+TGG | - | chr4_3:7181034-7181053 | Msa0627100:intron | 20.0% |
| !! | ACTTGTAAAAAAACAAAATC+GGG | - | chr4_3:7181143-7181162 | Msa0627100:intron | 20.0% |
| !! | TTCTTGAAATTACTTAAGTT+AGG | - | chr4_3:7181313-7181332 | Msa0627100:intron | 20.0% |
| !! | AAACAAATCAAAACTTTACA+AGG | + | chr4_3:7181372-7181391 | None:intergenic | 20.0% |
| !!! | CTTCAGAATGTTATATTTTT+TGG | - | chr4_3:7181829-7181848 | Msa0627100:intron | 20.0% |
| !!! | AACATTTTCTAAACTATTCT+AGG | - | chr4_3:7181874-7181893 | Msa0627100:intron | 20.0% |
| !! | TAATAAAGCATACAACTAAA+AGG | + | chr4_3:7182159-7182178 | None:intergenic | 20.0% |
| !!! | TTTAGTTGTATGCTTTATTA+TGG | - | chr4_3:7182159-7182178 | Msa0627100:five_prime_UTR | 20.0% |
| !!! | ATTGTTTTATAACGCATTTT+TGG | - | chr4_3:7182184-7182203 | Msa0627100:five_prime_UTR | 20.0% |
| !! | AATGTTGAAGATATCATTAA+TGG | - | chr4_3:7183368-7183387 | Msa0627100:five_prime_UTR | 20.0% |
| ! | AATTTAAAGGTTCATGTAGA+GGG | - | chr4_3:7179196-7179215 | Msa0627100:CDS | 25.0% |
| ! | TTAAATGTGAAACATTTGGA+GGG | + | chr4_3:7179296-7179315 | None:intergenic | 25.0% |
| !! | GTTTCACATTTAAGTTTCTA+TGG | - | chr4_3:7179303-7179322 | Msa0627100:CDS | 25.0% |
| !!! | CATTTAAGTTTCTATGGTTT+TGG | - | chr4_3:7179309-7179328 | Msa0627100:CDS | 25.0% |
| !!! | TTCAGTTTTGTATGATTACT+TGG | - | chr4_3:7179365-7179384 | Msa0627100:intron | 25.0% |
| !!! | TCAGTTTTGTATGATTACTT+GGG | - | chr4_3:7179366-7179385 | Msa0627100:intron | 25.0% |
| !! | TATTGTTGCCTTTGATTTAA+TGG | - | chr4_3:7179551-7179570 | Msa0627100:CDS | 25.0% |
| ! | TTTCCTTTCCATTAAATCAA+AGG | + | chr4_3:7179562-7179581 | None:intergenic | 25.0% |
| ! | AACGATAATCAATATCATCT+GGG | + | chr4_3:7179602-7179621 | None:intergenic | 25.0% |
| !! | TGATATTGATTATCGTTCTA+CGG | - | chr4_3:7179605-7179624 | Msa0627100:CDS | 25.0% |
| !!! | TTCTACGGATTTTGATTTAT+GGG | - | chr4_3:7179620-7179639 | Msa0627100:CDS | 25.0% |
| !! | TTTGATTTATGGGTATTTAG+AGG | - | chr4_3:7179630-7179649 | Msa0627100:CDS | 25.0% |
| ! | ACTGTCTCATGTTATAAATT+CGG | + | chr4_3:7180043-7180062 | None:intergenic | 25.0% |
| !!! | ATGCTTGGAATTGTTTTATA+TGG | - | chr4_3:7180261-7180280 | Msa0627100:five_prime_UTR | 25.0% |
| !!! | GAATTGTTTTATATGGTAAG+TGG | - | chr4_3:7180268-7180287 | Msa0627100:five_prime_UTR | 25.0% |
| !!! | GTTATTGTTATTTGTTACTG+TGG | - | chr4_3:7180910-7180929 | Msa0627100:intron | 25.0% |
| !!! | TGGTACTAGATTTTGTTTTT+AGG | - | chr4_3:7181106-7181125 | Msa0627100:intron | 25.0% |
| !!! | GGTACTAGATTTTGTTTTTA+GGG | - | chr4_3:7181107-7181126 | Msa0627100:intron | 25.0% |
| ! | CTTGTAAAAAAACAAAATCG+GGG | - | chr4_3:7181144-7181163 | Msa0627100:intron | 25.0% |
| ! | TAAGCAATTTAGTGCTAAAT+TGG | - | chr4_3:7181267-7181286 | Msa0627100:intron | 25.0% |
| !! | AATCTAAGATGTTCAACATT+GGG | - | chr4_3:7181413-7181432 | Msa0627100:intron | 25.0% |
| ! | AAAATTATCTGAATCACACA+GGG | + | chr4_3:7181640-7181659 | None:intergenic | 25.0% |
| ! | AAAAATTATCTGAATCACAC+AGG | + | chr4_3:7181641-7181660 | None:intergenic | 25.0% |
| !!! | CACTTTGATTTTATCCAAAA+TGG | - | chr4_3:7181734-7181753 | Msa0627100:intron | 25.0% |
| !! | TTACAAATCAGAATCCATTT+TGG | + | chr4_3:7181751-7181770 | None:intergenic | 25.0% |
| !! | GTTTAGAAAATGTTATTTGC+CGG | + | chr4_3:7181868-7181887 | None:intergenic | 25.0% |
| ! | TGTTGCAAACATGTTTATAT+TGG | - | chr4_3:7182129-7182148 | Msa0627100:intron | 25.0% |
| !!! | ACAACTTTTTGAGAAATCTT+TGG | - | chr4_3:7183080-7183099 | Msa0627100:five_prime_UTR | 25.0% |
| CAATTTAAAGGTTCATGTAG+AGG | - | chr4_3:7179195-7179214 | Msa0627100:CDS | 30.0% | |
| AGGTATTTGTCTATGAAATC+CGG | + | chr4_3:7179271-7179290 | None:intergenic | 30.0% | |
| CTTAAATGTGAAACATTTGG+AGG | + | chr4_3:7179297-7179316 | None:intergenic | 30.0% | |
| !! | CAGTTTTGTATGATTACTTG+GGG | - | chr4_3:7179367-7179386 | Msa0627100:intron | 30.0% |
| ! | TTGCCTTTGATTTAATGGAA+AGG | - | chr4_3:7179556-7179575 | Msa0627100:CDS | 30.0% |
| GAACGATAATCAATATCATC+TGG | + | chr4_3:7179603-7179622 | None:intergenic | 30.0% | |
| !!! | GTTCTACGGATTTTGATTTA+TGG | - | chr4_3:7179619-7179638 | Msa0627100:CDS | 30.0% |
| TTAGAGGATTTCTAAGTCTA+TGG | - | chr4_3:7179646-7179665 | Msa0627100:intron | 30.0% | |
| TAGAGGATTTCTAAGTCTAT+GGG | - | chr4_3:7179647-7179666 | Msa0627100:intron | 30.0% | |
| ! | ATTTCTAAGTCTATGGGTTA+TGG | - | chr4_3:7179653-7179672 | Msa0627100:intron | 30.0% |
| ACAAAAAGTGGTGATATTGT+TGG | - | chr4_3:7179795-7179814 | Msa0627100:intron | 30.0% | |
| ! | ATGACAAAGGAGAGTTTTTA+GGG | - | chr4_3:7179850-7179869 | Msa0627100:intron | 30.0% |
| TATTGCAAAGATTCACGAAA+TGG | - | chr4_3:7179882-7179901 | Msa0627100:intron | 30.0% | |
| AAATATCTAGAAAACGGTGA+AGG | + | chr4_3:7179988-7180007 | None:intergenic | 30.0% | |
| ATAAGTTCTTTGAGTCAAAG+CGG | + | chr4_3:7180347-7180366 | None:intergenic | 30.0% | |
| ! | TTTATGCAGCTCAGATTTTT+AGG | - | chr4_3:7180621-7180640 | Msa0627100:intron | 30.0% |
| TGTTATGAAGAATTTAGTGG+TGG | - | chr4_3:7181037-7181056 | Msa0627100:intron | 30.0% | |
| !! | TTTCTAGGGTTTACCTAAAT+GGG | - | chr4_3:7181066-7181085 | Msa0627100:intron | 30.0% |
| CTGTAAATTAAACCCCATTT+AGG | + | chr4_3:7181082-7181101 | None:intergenic | 30.0% | |
| ! | GGGGTTTAATTTACAGAATT+TGG | - | chr4_3:7181086-7181105 | Msa0627100:intron | 30.0% |
| !!! | ACCTTTTAGAATTTGGTACT+AGG | - | chr4_3:7181203-7181222 | Msa0627100:intron | 30.0% |
| ACCTAGTACCAAATTCTAAA+AGG | + | chr4_3:7181207-7181226 | None:intergenic | 30.0% | |
| ! | TGGTACTAGGTTTCAATTTT+AGG | - | chr4_3:7181216-7181235 | Msa0627100:intron | 30.0% |
| ! | GGTACTAGGTTTCAATTTTA+GGG | - | chr4_3:7181217-7181236 | Msa0627100:intron | 30.0% |
| TTTAGTGCTAAATTGGTACT+AGG | - | chr4_3:7181274-7181293 | Msa0627100:intron | 30.0% | |
| ! | GAATCTAAGATGTTCAACAT+TGG | - | chr4_3:7181412-7181431 | Msa0627100:intron | 30.0% |
| !!! | GTAGAAATTGGTTTTTGACA+AGG | - | chr4_3:7181435-7181454 | Msa0627100:intron | 30.0% |
| AACATACTCTTACACCAAAA+TGG | - | chr4_3:7181470-7181489 | Msa0627100:intron | 30.0% | |
| ! | CACAAAAAGTTGAACCATTT+TGG | + | chr4_3:7181487-7181506 | None:intergenic | 30.0% |
| ! | CAAAATGGTTCAACTTTTTG+TGG | - | chr4_3:7181485-7181504 | Msa0627100:intron | 30.0% |
| ! | GGTTTATTGATGTTGTCTTT+TGG | - | chr4_3:7181560-7181579 | Msa0627100:intron | 30.0% |
| TAAAATCAAAGTGCAAAGCA+GGG | + | chr4_3:7181727-7181746 | None:intergenic | 30.0% | |
| ATAAAATCAAAGTGCAAAGC+AGG | + | chr4_3:7181728-7181747 | None:intergenic | 30.0% | |
| ! | TTTTGGTGAAAATTATCCAC+CGG | - | chr4_3:7181846-7181865 | Msa0627100:intron | 30.0% |
| CTTACTGTTTAGTGATTTAC+TGG | - | chr4_3:7181922-7181941 | Msa0627100:intron | 30.0% | |
| !!! | GTGATTTACTGGTTTTGATA+AGG | - | chr4_3:7181933-7181952 | Msa0627100:intron | 30.0% |
| !! | TATGTGTTAGTGTTGCTTAT+TGG | - | chr4_3:7182080-7182099 | Msa0627100:intron | 30.0% |
| CTTGAACTCAATTAACAATG+TGG | - | chr4_3:7182105-7182124 | Msa0627100:intron | 30.0% | |
| ! | GTACTTCTTCAATTGTCTTT+TGG | + | chr4_3:7182299-7182318 | None:intergenic | 30.0% |
| TGACATATCAGAGTTTGATT+GGG | - | chr4_3:7182342-7182361 | Msa0627100:intron | 30.0% | |
| ! | AAAATCATCTGGTTCAAAGA+AGG | - | chr4_3:7182462-7182481 | Msa0627100:intron | 30.0% |
| GGTAATTAAGCAAAGTAATG+TGG | - | chr4_3:7182610-7182629 | Msa0627100:intron | 30.0% | |
| ATTAAGCAAAGTAATGTGGA+AGG | - | chr4_3:7182614-7182633 | Msa0627100:intron | 30.0% | |
| ! | ACTTGAGGATTTTCCAATTA+TGG | + | chr4_3:7182837-7182856 | None:intergenic | 30.0% |
| ATAATTGGAAAATCCTCAAG+TGG | - | chr4_3:7182836-7182855 | Msa0627100:five_prime_UTR | 30.0% | |
| ! | TCCTCAAGAAGTTTTTATGT+CGG | + | chr4_3:7182882-7182901 | None:intergenic | 30.0% |
| TTGTTGCTGAAAAACTATCA+GGG | - | chr4_3:7183109-7183128 | Msa0627100:five_prime_UTR | 30.0% | |
| ! | TTTTCCTTTTCCAATTCAAC+TGG | + | chr4_3:7183272-7183291 | None:intergenic | 30.0% |
| GTTGAATTGGAAAAGGAAAA+TGG | - | chr4_3:7183272-7183291 | Msa0627100:five_prime_UTR | 30.0% | |
| GATGAAAAGCAAACAATTCA+AGG | - | chr4_3:7183413-7183432 | Msa0627100:five_prime_UTR | 30.0% | |
| TGATGAACAAGTGAAGAAAA+TGG | - | chr4_3:7183436-7183455 | Msa0627100:five_prime_UTR | 30.0% | |
| TATATATGGAATCCATCCAC+CGG | - | chr4_3:7179249-7179268 | Msa0627100:CDS | 35.0% | |
| TATTTGTCTATGAAATCCGG+TGG | + | chr4_3:7179268-7179287 | None:intergenic | 35.0% | |
| CGAATCAAAAGACGATTACT+TGG | - | chr4_3:7179338-7179357 | Msa0627100:intron | 35.0% | |
| ATCAAAAGACGATTACTTGG+TGG | - | chr4_3:7179341-7179360 | Msa0627100:intron | 35.0% | |
| TAATGAATGGGAAGAAATCG+TGG | - | chr4_3:7179407-7179426 | Msa0627100:CDS | 35.0% | |
| CCTTACTACAAAAAGGCAAA+TGG | + | chr4_3:7179440-7179459 | None:intergenic | 35.0% | |
| ! | CCATTTGCCTTTTTGTAGTA+AGG | - | chr4_3:7179437-7179456 | Msa0627100:CDS | 35.0% |
| TAAGGGATAATCAAAGGAAG+AGG | + | chr4_3:7179466-7179485 | None:intergenic | 35.0% | |
| CTCTACTAAGGGATAATCAA+AGG | + | chr4_3:7179472-7179491 | None:intergenic | 35.0% | |
| CTTTGATTATCCCTTAGTAG+AGG | - | chr4_3:7179470-7179489 | Msa0627100:intron | 35.0% | |
| TAATCAATATCATCTGGGAG+AGG | + | chr4_3:7179597-7179616 | None:intergenic | 35.0% | |
| ! | ACGAGTATACGGTTGATATA+TGG | - | chr4_3:7179679-7179698 | Msa0627100:intron | 35.0% |
| ! | CGAGTATACGGTTGATATAT+GGG | - | chr4_3:7179680-7179699 | Msa0627100:intron | 35.0% |
| AATACAAAGTGCAGTCATCT+TGG | - | chr4_3:7179712-7179731 | Msa0627100:intron | 35.0% | |
| ACTACTGATGATACCATTGA+TGG | - | chr4_3:7179753-7179772 | Msa0627100:intron | 35.0% | |
| ! | ACTTTTTGTGCAACATACAG+GGG | + | chr4_3:7179784-7179803 | None:intergenic | 35.0% |
| !! | CACTTTTTGTGCAACATACA+GGG | + | chr4_3:7179785-7179804 | None:intergenic | 35.0% |
| TTGGTGAGATATGATGACAA+AGG | - | chr4_3:7179837-7179856 | Msa0627100:intron | 35.0% | |
| ! | GATGACAAAGGAGAGTTTTT+AGG | - | chr4_3:7179849-7179868 | Msa0627100:intron | 35.0% |
| TCGTGAATCTTTGCAATAGT+TGG | + | chr4_3:7179880-7179899 | None:intergenic | 35.0% | |
| ACTCTGTATACATAGCCAAT+CGG | + | chr4_3:7179911-7179930 | None:intergenic | 35.0% | |
| TGTGCTGTATTATGAACTCT+TGG | - | chr4_3:7180013-7180032 | Msa0627100:intron | 35.0% | |
| GTGCTGTATTATGAACTCTT+GGG | - | chr4_3:7180014-7180033 | Msa0627100:intron | 35.0% | |
| AGATATTGAATCAGCTAGTG+TGG | + | chr4_3:7180069-7180088 | None:intergenic | 35.0% | |
| TGTATGTTGCATTCAATGCT+TGG | - | chr4_3:7180246-7180265 | Msa0627100:five_prime_UTR | 35.0% | |
| TGGTAAGTGGTAAATTAGTC+TGG | - | chr4_3:7180281-7180300 | Msa0627100:five_prime_UTR | 35.0% | |
| TAAGTTCTTTGAGTCAAAGC+GGG | + | chr4_3:7180346-7180365 | None:intergenic | 35.0% | |
| !!! | TAGTGGTGGATTTTGTTTCT+AGG | - | chr4_3:7181051-7181070 | Msa0627100:intron | 35.0% |
| !!! | AGTGGTGGATTTTGTTTCTA+GGG | - | chr4_3:7181052-7181071 | Msa0627100:intron | 35.0% |
| !! | GTTTCTAGGGTTTACCTAAA+TGG | - | chr4_3:7181065-7181084 | Msa0627100:intron | 35.0% |
| !! | TTCTAGGGTTTACCTAAATG+GGG | - | chr4_3:7181067-7181086 | Msa0627100:intron | 35.0% |
| !! | TTTCTAGGGTTTGCCTATAT+GGG | - | chr4_3:7181177-7181196 | Msa0627100:intron | 35.0% |
| TCTAAAAGGTAACCCCATAT+AGG | + | chr4_3:7181193-7181212 | None:intergenic | 35.0% | |
| !!! | TGGGGTTACCTTTTAGAATT+TGG | - | chr4_3:7181196-7181215 | Msa0627100:intron | 35.0% |
| !!! | TGGTACTAGGTTTTGTTTCT+AGG | - | chr4_3:7181287-7181306 | Msa0627100:intron | 35.0% |
| GTTCAACATTGGGTAGAAAT+TGG | - | chr4_3:7181423-7181442 | Msa0627100:intron | 35.0% | |
| ! | TCTGTGTGCTTGTTCTTTTT+GGG | - | chr4_3:7181539-7181558 | Msa0627100:intron | 35.0% |
| !! | TCTTTTGGAGATTGTGTCTT+AGG | - | chr4_3:7181575-7181594 | Msa0627100:intron | 35.0% |
| AATACAGAAAGATGCAGGAA+TGG | + | chr4_3:7181679-7181698 | None:intergenic | 35.0% | |
| ! | TAGAAAATGTTATTTGCCGG+TGG | + | chr4_3:7181865-7181884 | None:intergenic | 35.0% |
| GACAAAAACTCACATGTGTA+GGG | + | chr4_3:7182040-7182059 | None:intergenic | 35.0% | |
| TGACAAAAACTCACATGTGT+AGG | + | chr4_3:7182041-7182060 | None:intergenic | 35.0% | |
| ! | TTGGTGTTCCTTTCTTCTTA+GGG | + | chr4_3:7182228-7182247 | None:intergenic | 35.0% |
| ! | AAAACGATCTCAGGTTTTCT+TGG | + | chr4_3:7182247-7182266 | None:intergenic | 35.0% |
| AAGTACCTGAATAACCATTC+TGG | - | chr4_3:7182313-7182332 | Msa0627100:intron | 35.0% | |
| AGTACCTGAATAACCATTCT+GGG | - | chr4_3:7182314-7182333 | Msa0627100:intron | 35.0% | |
| CAATCAAACTCTGATATGTC+AGG | + | chr4_3:7182343-7182362 | None:intergenic | 35.0% | |
| CTGACATATCAGAGTTTGAT+TGG | - | chr4_3:7182341-7182360 | Msa0627100:intron | 35.0% | |
| GACATATCAGAGTTTGATTG+GGG | - | chr4_3:7182343-7182362 | Msa0627100:intron | 35.0% | |
| ! | GATTTTCGACTACGTTTCTT+CGG | + | chr4_3:7182448-7182467 | None:intergenic | 35.0% |
| AAACGTAGTCGAAAATCATC+TGG | - | chr4_3:7182451-7182470 | Msa0627100:intron | 35.0% | |
| ATAGATGTGTCTTCTACTTC+AGG | + | chr4_3:7182756-7182775 | None:intergenic | 35.0% | |
| TGTCGCTGAAAAACCATAAT+TGG | - | chr4_3:7182821-7182840 | Msa0627100:five_prime_UTR | 35.0% | |
| ACCGACATAAAAACTTCTTG+AGG | - | chr4_3:7182878-7182897 | Msa0627100:five_prime_UTR | 35.0% | |
| ! | TCCTCAAGAAGTTTTTCTGT+CGG | + | chr4_3:7182978-7182997 | None:intergenic | 35.0% |
| TCGATATTTCTTCCACTTTG+AGG | + | chr4_3:7183044-7183063 | None:intergenic | 35.0% | |
| CAAAGTGGAAGAAATATCGA+TGG | - | chr4_3:7183044-7183063 | Msa0627100:five_prime_UTR | 35.0% | |
| GTTGTTGCTGAAAAACTATC+AGG | - | chr4_3:7183108-7183127 | Msa0627100:five_prime_UTR | 35.0% | |
| TGTTGCTGAAAAACTATCAG+GGG | - | chr4_3:7183110-7183129 | Msa0627100:five_prime_UTR | 35.0% | |
| AGAACCAGTTGAATTGGAAA+AGG | - | chr4_3:7183265-7183284 | Msa0627100:five_prime_UTR | 35.0% | |
| TGTGAAACATTTGGAGGGAA+AGG | + | chr4_3:7179291-7179310 | None:intergenic | 40.0% | |
| TCTCACTCAGAGCTAATGAA+TGG | - | chr4_3:7179394-7179413 | Msa0627100:CDS | 40.0% | |
| CTCACTCAGAGCTAATGAAT+GGG | - | chr4_3:7179395-7179414 | Msa0627100:CDS | 40.0% | |
| TGATTATCCCTTAGTAGAGG+CGG | - | chr4_3:7179473-7179492 | Msa0627100:intron | 40.0% | |
| TCTTCAATGGAGCTATTCAC+TGG | - | chr4_3:7179496-7179515 | Msa0627100:intron | 40.0% | |
| ! | TCTAAGTCTATGGGTTATGG+TGG | - | chr4_3:7179656-7179675 | Msa0627100:intron | 40.0% |
| !!! | CCACTTTTTGTGCAACATAC+AGG | + | chr4_3:7179786-7179805 | None:intergenic | 40.0% |
| CCTGTATGTTGCACAAAAAG+TGG | - | chr4_3:7179783-7179802 | Msa0627100:intron | 40.0% | |
| AACAGATTGCGTTACTGGAT+TGG | - | chr4_3:7179818-7179837 | Msa0627100:intron | 40.0% | |
| ! | TTCACGAAATGGATTCCGAT+TGG | - | chr4_3:7179893-7179912 | Msa0627100:intron | 40.0% |
| CTGTATTATGAACTCTTGGG+TGG | - | chr4_3:7180017-7180036 | Msa0627100:intron | 40.0% | |
| GTGTGATTCACTGTGATTCA+CGG | - | chr4_3:7180155-7180174 | Msa0627100:five_prime_UTR | 40.0% | |
| TGAGCTTATGCATGTGTAAC+TGG | - | chr4_3:7180211-7180230 | Msa0627100:five_prime_UTR | 40.0% | |
| TCCTACCAATTGGAAGAAAC+TGG | - | chr4_3:7180503-7180522 | Msa0627100:intron | 40.0% | |
| ACCAGTTTCTTCCAATTGGT+AGG | + | chr4_3:7180507-7180526 | None:intergenic | 40.0% | |
| AGAGACCAGTTTCTTCCAAT+TGG | + | chr4_3:7180511-7180530 | None:intergenic | 40.0% | |
| !!! | GGGGCTAGATTTTGTTTCTA+GGG | - | chr4_3:7181163-7181182 | Msa0627100:intron | 40.0% |
| !! | GTTTCTAGGGTTTGCCTATA+TGG | - | chr4_3:7181176-7181195 | Msa0627100:intron | 40.0% |
| !! | TTCTAGGGTTTGCCTATATG+GGG | - | chr4_3:7181178-7181197 | Msa0627100:intron | 40.0% |
| ! | TAGTGCCAGTTTTCCATTTG+TGG | - | chr4_3:7181516-7181535 | Msa0627100:intron | 40.0% |
| ACAGACCACAAATGGAAAAC+TGG | + | chr4_3:7181524-7181543 | None:intergenic | 40.0% | |
| ! | GTCTGTGTGCTTGTTCTTTT+TGG | - | chr4_3:7181538-7181557 | Msa0627100:intron | 40.0% |
| AGCTCAATACAGAAAGATGC+AGG | + | chr4_3:7181684-7181703 | None:intergenic | 40.0% | |
| CATGTCAGTTTCACTAGCTA+TGG | + | chr4_3:7181777-7181796 | None:intergenic | 40.0% | |
| CTACAGTTCACAAAATGCTC+TGG | + | chr4_3:7181900-7181919 | None:intergenic | 40.0% | |
| AGCAGAAAAGCGAAATCATG+AGG | + | chr4_3:7181960-7181979 | None:intergenic | 40.0% | |
| CTGCTGTAAATATGTTGCAC+CGG | - | chr4_3:7181975-7181994 | Msa0627100:intron | 40.0% | |
| CAGTTCTTCCCTAAGAAGAA+AGG | - | chr4_3:7182217-7182236 | Msa0627100:intron | 40.0% | |
| !! | CTTGGTGTTCCTTTCTTCTT+AGG | + | chr4_3:7182229-7182248 | None:intergenic | 40.0% |
| GAACTTATCTCTTCTCCAGT+TGG | + | chr4_3:7182277-7182296 | None:intergenic | 40.0% | |
| GATTCCCAGAATGGTTATTC+AGG | + | chr4_3:7182321-7182340 | None:intergenic | 40.0% | |
| ATATGTCAGGATTCCCAGAA+TGG | + | chr4_3:7182330-7182349 | None:intergenic | 40.0% | |
| TGGTTCAAAGAAGGATGACA+AGG | - | chr4_3:7182471-7182490 | Msa0627100:intron | 40.0% | |
| TGAAACTGAAACTCCTTCAG+AGG | - | chr4_3:7182498-7182517 | Msa0627100:intron | 40.0% | |
| ! | AGAAGACTTTCCCTTTTCCT+TGG | + | chr4_3:7182527-7182546 | None:intergenic | 40.0% |
| TTGACGTTATCAGCATCACT+GGG | + | chr4_3:7182563-7182582 | None:intergenic | 40.0% | |
| ATTGACGTTATCAGCATCAC+TGG | + | chr4_3:7182564-7182583 | None:intergenic | 40.0% | |
| AACAAAGATTGACGATGCAG+AGG | - | chr4_3:7182589-7182608 | Msa0627100:intron | 40.0% | |
| !! | TCCTCAAAATGTTGTTTCGC+CGG | + | chr4_3:7182690-7182709 | None:intergenic | 40.0% |
| ACCAGTGAAACAAGTTTCTG+AGG | - | chr4_3:7182782-7182801 | Msa0627100:five_prime_UTR | 40.0% | |
| ! | TCCTCAGAAACTTGTTTCAC+TGG | + | chr4_3:7182786-7182805 | None:intergenic | 40.0% |
| ATCAATGTGTCTTCCACTTG+AGG | + | chr4_3:7182852-7182871 | None:intergenic | 40.0% | |
| TCAAGTGGAAGACACATTGA+TGG | - | chr4_3:7182851-7182870 | Msa0627100:five_prime_UTR | 40.0% | |
| ACCGACAGAAAAACTTCTTG+AGG | - | chr4_3:7182974-7182993 | Msa0627100:five_prime_UTR | 40.0% | |
| !!! | CTTTGAGGCTTTTCCAATTG+CGG | + | chr4_3:7183029-7183048 | None:intergenic | 40.0% |
| CAATTGGAAAAGCCTCAAAG+TGG | - | chr4_3:7183029-7183048 | Msa0627100:five_prime_UTR | 40.0% | |
| AGTGGAAGAAATATCGATGG+CGG | - | chr4_3:7183047-7183066 | Msa0627100:five_prime_UTR | 40.0% | |
| ! | AGTTGGAAGTACAGCTGAAT+TGG | - | chr4_3:7183145-7183164 | Msa0627100:five_prime_UTR | 40.0% |
| TGAATTGGAAAAGCCTCAAG+TGG | - | chr4_3:7183160-7183179 | Msa0627100:five_prime_UTR | 40.0% | |
| ACAGATGTTTCTTCCACTTG+AGG | + | chr4_3:7183176-7183195 | None:intergenic | 40.0% | |
| TCAAGTGGAAGAAACATCTG+TGG | - | chr4_3:7183175-7183194 | Msa0627100:five_prime_UTR | 40.0% | |
| ! | TCAACTGGTTCTTCCTCTTT+GGG | + | chr4_3:7183257-7183276 | None:intergenic | 40.0% |
| ! | TTCAACTGGTTCTTCCTCTT+TGG | + | chr4_3:7183258-7183277 | None:intergenic | 40.0% |
| AGAGGAAGAACCAGTTGAAT+TGG | - | chr4_3:7183259-7183278 | Msa0627100:five_prime_UTR | 40.0% | |
| AGTTACTAGCAGGAGAAATC+CGG | - | chr4_3:7183308-7183327 | Msa0627100:five_prime_UTR | 40.0% | |
| !! | GTTTGCTTTTCATCACTTGC+TGG | + | chr4_3:7183407-7183426 | None:intergenic | 40.0% |
| TGTCTATGAAATCCGGTGGA+TGG | + | chr4_3:7179264-7179283 | None:intergenic | 45.0% | |
| GAGGCAGCCTTACTACAAAA+AGG | + | chr4_3:7179447-7179466 | None:intergenic | 45.0% | |
| TTGAAGACCGCCTCTACTAA+GGG | + | chr4_3:7179483-7179502 | None:intergenic | 45.0% | |
| ATTGAAGACCGCCTCTACTA+AGG | + | chr4_3:7179484-7179503 | None:intergenic | 45.0% | |
| TTAGTAGAGGCGGTCTTCAA+TGG | - | chr4_3:7179483-7179502 | Msa0627100:intron | 45.0% | |
| CAATGGAGCTATTCACTGGT+TGG | - | chr4_3:7179500-7179519 | Msa0627100:intron | 45.0% | |
| !! | GGTTATGGTGGACGAGTATA+CGG | - | chr4_3:7179668-7179687 | Msa0627100:intron | 45.0% |
| TACAGGGGAAACACCATCAA+TGG | + | chr4_3:7179769-7179788 | None:intergenic | 45.0% | |
| GTTGGAACAGATTGCGTTAC+TGG | - | chr4_3:7179813-7179832 | Msa0627100:intron | 45.0% | |
| AGTCTTTGCTTTCACTCCCA+TGG | - | chr4_3:7179928-7179947 | Msa0627100:intron | 45.0% | |
| GCTCTACTTGTTTGTGCCAT+GGG | + | chr4_3:7179947-7179966 | None:intergenic | 45.0% | |
| TGCTCTACTTGTTTGTGCCA+TGG | + | chr4_3:7179948-7179967 | None:intergenic | 45.0% | |
| AACTCTCTGCTCCTACCAAT+TGG | - | chr4_3:7180493-7180512 | Msa0627100:intron | 45.0% | |
| !! | CGGGGCTAGATTTTGTTTCT+AGG | - | chr4_3:7181162-7181181 | Msa0627100:intron | 45.0% |
| ACAAGCACACAGACCACAAA+TGG | + | chr4_3:7181532-7181551 | None:intergenic | 45.0% | |
| ACACAGGGCACAGAAAAAAG+TGG | + | chr4_3:7181625-7181644 | None:intergenic | 45.0% | |
| ACCGGCACTCCATATTGAAT+TGG | - | chr4_3:7181993-7182012 | Msa0627100:intron | 45.0% | |
| CCCAATTCAATATGGAGTGC+CGG | + | chr4_3:7181997-7182016 | None:intergenic | 45.0% | |
| CCGGCACTCCATATTGAATT+GGG | - | chr4_3:7181994-7182013 | Msa0627100:intron | 45.0% | |
| CGGCACTCCATATTGAATTG+GGG | - | chr4_3:7181995-7182014 | Msa0627100:intron | 45.0% | |
| GGCACTCCATATTGAATTGG+GGG | - | chr4_3:7181996-7182015 | Msa0627100:intron | 45.0% | |
| GCACTCCATATTGAATTGGG+GGG | - | chr4_3:7181997-7182016 | Msa0627100:intron | 45.0% | |
| TCGAACCCCCCAATTCAATA+TGG | + | chr4_3:7182005-7182024 | None:intergenic | 45.0% | |
| ATATTGAATTGGGGGGTTCG+AGG | - | chr4_3:7182004-7182023 | Msa0627100:intron | 45.0% | |
| CTTCTTAGGGAAGAACTGCA+TGG | + | chr4_3:7182215-7182234 | None:intergenic | 45.0% | |
| ! | ATCGTTTTCGTTGCTCCAAC+TGG | - | chr4_3:7182259-7182278 | Msa0627100:intron | 45.0% |
| TCAGAGTTTGATTGGGGAAC+CGG | - | chr4_3:7182349-7182368 | Msa0627100:intron | 45.0% | |
| ! | CTAATCCTTGATGATCGCCT+TGG | + | chr4_3:7182382-7182401 | None:intergenic | 45.0% |
| TTTCGACTACGTTTCTTCGG+AGG | + | chr4_3:7182445-7182464 | None:intergenic | 45.0% | |
| ! | TTTTCCTTGGCTTCCTCTGA+AGG | + | chr4_3:7182514-7182533 | None:intergenic | 45.0% |
| TTCAGAGGAAGCCAAGGAAA+AGG | - | chr4_3:7182513-7182532 | Msa0627100:intron | 45.0% | |
| TCAGAGGAAGCCAAGGAAAA+GGG | - | chr4_3:7182514-7182533 | Msa0627100:intron | 45.0% | |
| ! | ACCGGCGAAACAACATTTTG+AGG | - | chr4_3:7182686-7182705 | Msa0627100:intron | 45.0% |
| !! | GAGGAAGCTTTGAATGCTGT+TGG | - | chr4_3:7182705-7182724 | Msa0627100:five_prime_UTR | 45.0% |
| TGTCACTGAAAAGCCGCAAT+CGG | - | chr4_3:7182917-7182936 | Msa0627100:five_prime_UTR | 45.0% | |
| ! | ACTCGAGGATTTTCCGATTG+CGG | + | chr4_3:7182933-7182952 | None:intergenic | 45.0% |
| ATCAATGTGTCTTCCACTCG+AGG | + | chr4_3:7182948-7182967 | None:intergenic | 45.0% | |
| TCGAGTGGAAGACACATTGA+TGG | - | chr4_3:7182947-7182966 | Msa0627100:five_prime_UTR | 45.0% | |
| TGTCACTGAAAAGCCGCAAT+TGG | - | chr4_3:7182917-7182936 | Msa0627100:five_prime_UTR | 45.0% | |
| !! | AGAAATATCGATGGCGGAAC+TGG | - | chr4_3:7183053-7183072 | Msa0627100:five_prime_UTR | 45.0% |
| TGCTGAAAAACTATCAGGGG+AGG | - | chr4_3:7183113-7183132 | Msa0627100:five_prime_UTR | 45.0% | |
| AGCTGTACTTCCAACTCAAC+TGG | + | chr4_3:7183141-7183160 | None:intergenic | 45.0% | |
| AGAAACATCTGTGGCGAAAC+CGG | - | chr4_3:7183184-7183203 | Msa0627100:five_prime_UTR | 45.0% | |
| TCCACAGAAAGTTGTTCCAC+CGG | + | chr4_3:7183206-7183225 | None:intergenic | 45.0% | |
| TGTCGCTGAAAAACCCAAAG+AGG | - | chr4_3:7183241-7183260 | Msa0627100:five_prime_UTR | 45.0% | |
| AGCTGATAGCAGTTACTAGC+AGG | - | chr4_3:7183298-7183317 | Msa0627100:five_prime_UTR | 45.0% | |
| !! | AATTCATAAATTAAAAAAAA+TGG | + | chr4_3:7180564-7180583 | None:intergenic | 5.0% |
| GAGCAGAGAGTTCAACAGAC+AGG | + | chr4_3:7180485-7180504 | None:intergenic | 50.0% | |
| GGAGCAACGAAAACGATCTC+AGG | + | chr4_3:7182256-7182275 | None:intergenic | 50.0% | |
| AGACACCAAGGCGATCATCA+AGG | - | chr4_3:7182374-7182393 | Msa0627100:intron | 50.0% | |
| AACTCCTTCAGAGGAAGCCA+AGG | - | chr4_3:7182507-7182526 | Msa0627100:intron | 50.0% | |
| CCACTGATGTCTTCCACTTG+AGG | + | chr4_3:7182662-7182681 | None:intergenic | 50.0% | |
| CCTCAAGTGGAAGACATCAG+TGG | - | chr4_3:7182659-7182678 | Msa0627100:intron | 50.0% | |
| GAAGACATCAGTGGCAGAAC+CGG | - | chr4_3:7182668-7182687 | Msa0627100:intron | 50.0% | |
| ACTTCAGGCTTCTCCAGTTG+CGG | + | chr4_3:7182741-7182760 | None:intergenic | 50.0% | |
| GCAATCGGAAAATCCTCGAG+TGG | - | chr4_3:7182932-7182951 | Msa0627100:five_prime_UTR | 50.0% | |
| ACCGGTGGAACAACTTTCTG+TGG | - | chr4_3:7183202-7183221 | Msa0627100:five_prime_UTR | 50.0% | |
| !! | TGATCGCCTTGGTGTCTTGC+CGG | + | chr4_3:7182371-7182390 | None:intergenic | 55.0% |
| !!! | TGCAGGTGGTGGGGTTGTTT+TGG | + | chr4_3:7182413-7182432 | None:intergenic | 55.0% |
| GACTGCTGAGAAGCCTCAAG+TGG | - | chr4_3:7182646-7182665 | Msa0627100:intron | 55.0% | |
| ! | TGGCGCTGAAAAACCGCAAC+TGG | - | chr4_3:7182725-7182744 | Msa0627100:five_prime_UTR | 55.0% |
| AACATCTGTGGCGAAACCGG+TGG | - | chr4_3:7183187-7183206 | Msa0627100:five_prime_UTR | 55.0% | |
| ! | TCCTTCGTTTTCCTCTGCGC+CGG | + | chr4_3:7183330-7183349 | None:intergenic | 55.0% |
| CTCAGCTTGTGCAGGTGGTG+GGG | + | chr4_3:7182422-7182441 | None:intergenic | 60.0% | |
| GCTCAGCTTGTGCAGGTGGT+GGG | + | chr4_3:7182423-7182442 | None:intergenic | 60.0% | |
| TTCGGAGGCTCAGCTTGTGC+AGG | + | chr4_3:7182430-7182449 | None:intergenic | 60.0% | |
| !! | AGGGGAGGCACCAGTTGAGT+TGG | - | chr4_3:7183128-7183147 | Msa0627100:five_prime_UTR | 60.0% |
| TCCGGCGCAGAGGAAAACGA+AGG | - | chr4_3:7183326-7183345 | Msa0627100:five_prime_UTR | 60.0% | |
| GGGGAACCGGCAAGACACCA+AGG | - | chr4_3:7182362-7182381 | Msa0627100:intron | 65.0% | |
| GGCTCAGCTTGTGCAGGTGG+TGG | + | chr4_3:7182424-7182443 | None:intergenic | 65.0% | |
| GGAGGCTCAGCTTGTGCAGG+TGG | + | chr4_3:7182427-7182446 | None:intergenic | 65.0% | |
| GCAGGAGAAATCCGGCGCAG+AGG | - | chr4_3:7183316-7183335 | Msa0627100:five_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 7179189 | 7183472 | 7179189 | ID=Msa0627100;Name=Msa0627100 |
| chr4_3 | mRNA | 7179189 | 7183472 | 7179189 | ID=Msa0627100-mRNA-1;Parent=Msa0627100;Name=Msa0627100-mRNA-1;_AED=0.17;_eAED=0.21;_QI=1259|0.4|0.5|1|0.4|0.33|6|0|134 |
| chr4_3 | exon | 7179189 | 7179341 | 7179189 | ID=Msa0627100-mRNA-1:exon:2109;Parent=Msa0627100-mRNA-1 |
| chr4_3 | exon | 7179390 | 7179488 | 7179390 | ID=Msa0627100-mRNA-1:exon:2108;Parent=Msa0627100-mRNA-1 |
| chr4_3 | exon | 7179509 | 7179649 | 7179509 | ID=Msa0627100-mRNA-1:exon:2107;Parent=Msa0627100-mRNA-1 |
| chr4_3 | exon | 7180026 | 7180441 | 7180026 | ID=Msa0627100-mRNA-1:exon:2106;Parent=Msa0627100-mRNA-1 |
| chr4_3 | exon | 7182137 | 7182208 | 7182137 | ID=Msa0627100-mRNA-1:exon:2105;Parent=Msa0627100-mRNA-1 |
| chr4_3 | exon | 7182693 | 7183472 | 7182693 | ID=Msa0627100-mRNA-1:exon:2104;Parent=Msa0627100-mRNA-1 |
| chr4_3 | five_prime_UTR | 7182693 | 7183472 | 7182693 | ID=Msa0627100-mRNA-1:five_prime_utr;Parent=Msa0627100-mRNA-1 |
| chr4_3 | five_prime_UTR | 7182137 | 7182208 | 7182137 | ID=Msa0627100-mRNA-1:five_prime_utr;Parent=Msa0627100-mRNA-1 |
| chr4_3 | five_prime_UTR | 7180035 | 7180441 | 7180035 | ID=Msa0627100-mRNA-1:five_prime_utr;Parent=Msa0627100-mRNA-1 |
| chr4_3 | CDS | 7180026 | 7180034 | 7180026 | ID=Msa0627100-mRNA-1:cds;Parent=Msa0627100-mRNA-1 |
| chr4_3 | CDS | 7179509 | 7179649 | 7179509 | ID=Msa0627100-mRNA-1:cds;Parent=Msa0627100-mRNA-1 |
| chr4_3 | CDS | 7179390 | 7179488 | 7179390 | ID=Msa0627100-mRNA-1:cds;Parent=Msa0627100-mRNA-1 |
| chr4_3 | CDS | 7179189 | 7179341 | 7179189 | ID=Msa0627100-mRNA-1:cds;Parent=Msa0627100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
