AlfalfaGEDB | Msa0631180

M. sativa cultivar zhongmu-4 / Msa0631180

KEGG: K09422
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141
PFAM: PF13921.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0631180	XP_013454904.1	97.151	351	8	2	1	350	1	350	0.0	694

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0631180	sp\|Q42575\|MYB1_ARATH	50.151	331	150	6	26	348	43	366	7.33e-98	298

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0631180	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0275080	Msa0631180	0.814489	1.501007e-51	-8.615850e-47
Msa0631170	Msa0631180	0.802388	5.746060e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0631180	MtrunA17_Chr4g0008551	97.151	351	8	2	1	350	1	350	0.0	694
Msa0631180	MtrunA17_Chr3g0133601	73.148	108	28	1	37	143	35	142	3.60e-53	175
Msa0631180	MtrunA17_Chr4g0053431	70.874	103	30	0	37	139	3	105	2.83e-49	166
Msa0631180	MtrunA17_Chr5g0437321	69.159	107	33	0	30	136	10	116	1.99e-47	162
Msa0631180	MtrunA17_Chr5g0401731	68.932	103	32	0	37	139	13	115	3.05e-47	162
Msa0631180	MtrunA17_Chr6g0454921	66.019	103	35	0	37	139	13	115	2.22e-45	154
Msa0631180	MtrunA17_Chr3g0125801	62.376	101	38	0	39	139	16	116	1.36e-39	141
Msa0631180	MtrunA17_Chr5g0417621	55.357	112	50	0	28	139	123	234	2.13e-39	144
Msa0631180	MtrunA17_Chr4g0042501	50.806	124	61	0	16	139	82	205	4.13e-39	143
Msa0631180	MtrunA17_Chr6g0480581	57.000	100	43	0	39	138	4	103	1.10e-38	137

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0631180	AT3G09230.1	50.151	331	150	6	26	348	43	366	7.45e-99	298
Msa0631180	AT3G55730.1	45.283	371	165	10	1	339	1	365	3.15e-92	281
Msa0631180	AT2G39880.1	42.638	326	160	10	13	334	24	326	3.13e-69	221
Msa0631180	AT5G67300.1	66.364	110	36	1	37	146	4	112	4.19e-48	164
Msa0631180	AT3G50060.1	67.593	108	35	0	37	144	4	111	1.84e-47	162
Msa0631180	AT4G37260.1	47.423	194	85	3	37	220	11	197	2.39e-47	163
Msa0631180	AT2G23290.1	62.602	123	45	1	37	159	11	132	3.17e-46	160
Msa0631180	AT1G17950.1	53.906	128	51	2	39	159	5	131	4.64e-42	147
Msa0631180	AT1G69560.1	54.545	110	50	0	30	139	98	207	1.86e-39	142
Msa0631180	AT5G17800.1	51.969	127	59	1	15	139	67	193	2.07e-39	142

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Find 114 sgRNAs with CRISPR-Local

Find 489 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGATGGGTGATACTGC+TGG	0.663087	4_3:+13827796	Msa0631180:CDS
AAAGCACTTACACGTGCTAC+TGG	0.500174	4_3:-13827445	None:intergenic
AACAAGTTTCGTACCAGTGA+AGG	0.504511	4_3:-13822507	None:intergenic
AACAGCAGCGTCAAAATGAT+GGG	0.573995	4_3:+13827784	Msa0631180:CDS
AACCTTGCTTGGCTTAAAAG+TGG	0.461055	4_3:+13827754	Msa0631180:CDS
AACTCCAAAAGCTCTTTGTT+GGG	0.427043	4_3:+13827655	Msa0631180:CDS
AAGGGTTTCCGTTTAACAGA+AGG	0.537963	4_3:-13822488	None:intergenic
AAGTTAGAATCTAGTAACAT+GGG	0.589229	4_3:+13827229	Msa0631180:CDS
AATGCGTATAACGCTTTCAA+TGG	0.428676	4_3:+13827469	Msa0631180:CDS
AATGGATCATGATTACATAC+TGG	0.480485	4_3:+13827833	Msa0631180:exon

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAATAAGTACTTGACAG+AGG	+	chr4_3:13822903-13822922	Msa0631180:intron	30.0%
AAGAATAAGTACTTGACAGA+GGG	+	chr4_3:13822904-13822923	Msa0631180:intron	30.0%
AAATCATGAAGTTACAGGAA+AGG	+	chr4_3:13823180-13823199	Msa0631180:intron	30.0%
AATCATGAAGTTACAGGAAA+GGG	+	chr4_3:13823181-13823200	Msa0631180:intron	30.0%
AAAAATGTCCTGTTTATTGG+TGG	+	chr4_3:13823343-13823362	Msa0631180:intron	30.0%
AAAATGTCCTGTTTATTGGT+GGG	+	chr4_3:13823344-13823363	Msa0631180:intron	30.0%
ATATGTGGTAGTCATTATGT+TGG	+	chr4_3:13823462-13823481	Msa0631180:intron	30.0%
TAAAGTAACAGCTAGATGAA+AGG	-	chr4_3:13823706-13823725	None:intergenic	30.0%
TATCAAGTACGAAATTCACA+AGG	-	chr4_3:13824103-13824122	None:intergenic	30.0%
GAATTTCGTACTTGATATTC+TGG	+	chr4_3:13824106-13824125	Msa0631180:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	13822187	13828069	13822187	ID=Msa0631180;Name=Msa0631180
chr4_3	mRNA	13822187	13828069	13822187	ID=Msa0631180-mRNA-1;Parent=Msa0631180;Name=Msa0631180-mRNA-1;_AED=0.06;_eAED=0.06;_QI=43\|1\|1\|1\|1\|1\|2\|235\|350
chr4_3	exon	13822187	13822515	13822187	ID=Msa0631180-mRNA-1:exon:3871;Parent=Msa0631180-mRNA-1
chr4_3	exon	13827068	13828069	13827068	ID=Msa0631180-mRNA-1:exon:3872;Parent=Msa0631180-mRNA-1
chr4_3	five_prime_UTR	13822187	13822229	13822187	ID=Msa0631180-mRNA-1:five_prime_utr;Parent=Msa0631180-mRNA-1
chr4_3	CDS	13822230	13822515	13822230	ID=Msa0631180-mRNA-1:cds;Parent=Msa0631180-mRNA-1
chr4_3	CDS	13827068	13827834	13827068	ID=Msa0631180-mRNA-1:cds;Parent=Msa0631180-mRNA-1
chr4_3	three_prime_UTR	13827835	13828069	13827835	ID=Msa0631180-mRNA-1:three_prime_utr;Parent=Msa0631180-mRNA-1

Gene Sequence

>Msa0631180

ATGGAACCAGAACAACAACAACCACCAACTCTCACGGCGGTGCACGACGGAAGCGGCGACGAAGGTTTAGCCGCATTAGGCGAAGGCGGTGAAGGAAGTAGCGGTAGCAAAGTGAAAGGACCTTGGTCTCCTGAAGAAGACGCCATTCTCAGTCGTCTTGTTAGTCAGTTCGGTGCTAGAAATTGGAGTTTGATTGCTCGTGGGATTTCTGGAAGATCGGGGAAGTCGTGCCGGCTCCGATGGTGTAATCAGCTTGATCCTTCTGTTAAACGGAAACCCTTCACTGATGAGGAGGACCGGATCATAGTTGCTGCTCATGCAATCCATGGAAACAAATGGGCAGCCATTGCTAGGCTTCTGCCAGGAAGAACAGATAATGCCATTAAGAACCACTGGAATTCTACTCTGAGGCGTCGAGGAATTGGGGGAGTTGAACATGATAATACTAAGTTAGAATCTAGTAACATGGGGGGAAATATCAGCTTGGAGAAAGCCAAAGCATCATCTGAAGAAACTCTATCATGTGGAGATGTTAATTCTTTGAAATCCTCAGAAGGAAGAGATGTTAGTTCTATGGAGATTGTGGATGATAAAAATGAAGACAAAGCAAGGACTGATGTTCAATTATACCATGAAGTCAGGGATCCACCGACCCTTTTTAAGCCAGTAGCACGTGTAAGTGCTTTTAATGCGTATAACGCTTTCAATGGTTCCCAGCCTTCAACATCAGCTCCAAGACCTGTTCCAATGCAAGGACCTATTTTACATTCACCAAAATCAGATGCGGAAATTTGTAAAATGCTTAACAGAACTATTGTCGACCGATCAGTGCCTAATCAGTGTGGTCATGGATGCTGCTCATCTCTTGGTAACAACTCCAAAAGCTCTTTGTTGGGACCAGACTTCATTGAATATTCAGAACCTCAATCTTTCACAAGTTTTGAGTTGGCTGCAATAGCTACAGACATTAGTAACCTTGCTTGGCTTAAAAGTGGATTGGAGAACAGCAGCGTCAAAATGATGGGTGATACTGCTGGCAGGGTTAATATCTAA

Protein sequence

>Msa0631180

MEPEQQQPPTLTAVHDGSGDEGLAALGEGGEGSSGSKVKGPWSPEEDAILSRLVSQFGARNWSLIARGISGRSGKSCRLRWCNQLDPSVKRKPFTDEEDRIIVAAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGIGGVEHDNTKLESSNMGGNISLEKAKASSEETLSCGDVNSLKSSEGRDVSSMEIVDDKNEDKARTDVQLYHEVRDPPTLFKPVARVSAFNAYNAFNGSQPSTSAPRPVPMQGPILHSPKSDAEICKMLNRTIVDRSVPNQCGHGCCSSLGNNSKSSLLGPDFIEYSEPQSFTSFELAAIATDISNLAWLKSGLENSSVKMMGDTAGRVNI*