AlfalfaGEDB | Msa0631170

M. sativa cultivar zhongmu-4 / Msa0631170

KEGG: K09422
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0631170	XP_013454904.1	92.857	350	10	2	1	335	1	350	0.0	653

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0631170	sp\|Q42575\|MYB1_ARATH	47.734	331	144	7	25	333	43	366	2.46e-87	270

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0631170	A0A072UH07	92.857	350	10	2	1	335	1	350	0.0	653

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TFs/TRs:

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Gene ID	Type	Classification
Msa0631170	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001450	Msa0631170	0.823219	1.558463e-53	-8.615850e-47
Msa0026130	Msa0631170	0.804297	2.311070e-49	-8.615850e-47
Msa0027230	Msa0631170	0.806681	7.310568e-50	-8.615850e-47
Msa0044000	Msa0631170	0.802935	4.429898e-49	-8.615850e-47
Msa0072420	Msa0631170	0.805886	1.075128e-49	-8.615850e-47
Msa0140820	Msa0631170	0.825278	5.115107e-54	-8.615850e-47
Msa0211150	Msa0631170	0.807244	5.557378e-50	-8.615850e-47
Msa0214550	Msa0631170	0.811916	5.509814e-51	-8.615850e-47
Msa0229230	Msa0631170	0.821630	3.645508e-53	-8.615850e-47
Msa0232080	Msa0631170	0.800038	1.738086e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0631170	MtrunA17_Chr4g0008551	92.857	350	10	2	1	335	1	350	0.0	653
Msa0631170	MtrunA17_Chr3g0133601	65.741	108	22	2	36	128	35	142	3.81e-41	143
Msa0631170	MtrunA17_Chr4g0053431	64.078	103	23	1	36	124	3	105	3.49e-39	139
Msa0631170	MtrunA17_Chr5g0401731	61.165	103	26	1	36	124	13	115	1.41e-36	134
Msa0631170	MtrunA17_Chr5g0437321	60.748	107	28	1	29	121	10	116	8.34e-36	131
Msa0631170	MtrunA17_Chr6g0454921	57.282	103	30	1	36	124	13	115	2.02e-34	125
Msa0631170	MtrunA17_Chr3g0125801	53.465	101	33	2	38	124	16	116	1.51e-29	114
Msa0631170	MtrunA17_Chr7g0238631	51.961	102	35	1	37	124	112	213	2.37e-29	118
Msa0631170	MtrunA17_Chr5g0417621	48.214	112	44	1	27	124	123	234	2.39e-29	117
Msa0631170	MtrunA17_Chr1g0157731	42.208	154	71	4	37	174	90	241	3.53e-29	118

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0631170	AT3G09230.1	47.734	331	144	7	25	333	43	366	2.51e-88	270
Msa0631170	AT3G55730.1	41.622	370	165	10	1	324	1	365	8.38e-77	241
Msa0631170	AT2G39880.1	37.798	336	148	11	12	319	24	326	1.25e-54	183
Msa0631170	AT4G37260.1	43.814	194	78	4	36	205	11	197	4.98e-37	135
Msa0631170	AT5G67300.1	59.091	110	30	2	36	131	4	112	1.13e-36	134
Msa0631170	AT3G50060.1	60.185	108	29	1	36	129	4	111	3.65e-36	132
Msa0631170	AT2G23290.1	56.098	123	39	2	36	144	11	132	5.33e-36	132
Msa0631170	AT1G17950.1	43.262	141	59	2	38	157	5	145	2.43e-31	118
Msa0631170	AT5G17800.1	46.457	127	52	2	14	124	67	193	9.77e-30	116
Msa0631170	AT1G69560.1	47.273	110	44	1	29	124	98	207	1.87e-29	115

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Find 109 sgRNAs with CRISPR-Local

Find 491 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGGGCAAATCTTAAT+GGG	0.412294	4_3:+13811472	Msa0631170:three_prime_UTR
AAAATGATGGGTGATACTGC+TGG	0.663087	4_3:+13811392	Msa0631170:CDS
AAAGCACTTACACGTGCTAC+TGG	0.500174	4_3:-13811041	None:intergenic
AACAGCAGCGTCAAAATGAT+GGG	0.573995	4_3:+13811380	Msa0631170:CDS
AACCTTGCTTGGCTTAAAAG+TGG	0.461055	4_3:+13811350	Msa0631170:CDS
AACTCCAAAAGCTCTTTGTT+GGG	0.427043	4_3:+13811251	Msa0631170:CDS
AACTGGAGTTTGATTGCTCG+TGG	0.529814	4_3:+13806059	Msa0631170:CDS
AAGAGACTTATATTTAGAGA+CGG	0.551311	4_3:-13811656	None:intergenic
AAGTTAGAATCTAGTAACAT+AGG	0.508021	4_3:+13810825	Msa0631170:CDS
AATGCGTATAACGCTTTCAA+TGG	0.428676	4_3:+13811065	Msa0631170:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGTTTAATGGAGACTCAAA+CGG	-	chr4_3:13806343-13806362	None:intergenic	30.0%
AAAAATGTAGCGATTATTGG+TGG	+	chr4_3:13806997-13807016	Msa0631170:intron	30.0%
AAAATGTAGCGATTATTGGT+GGG	+	chr4_3:13806998-13807017	Msa0631170:intron	30.0%
ATGAATTACTGTTGTCATTC+TGG	+	chr4_3:13807158-13807177	Msa0631170:intron	30.0%
AGAAACCCGTAACTATAAAT+AGG	+	chr4_3:13807482-13807501	Msa0631170:intron	30.0%
CATCAAGTATGAAATTCACA+AGG	-	chr4_3:13807649-13807668	None:intergenic	30.0%
AACAAGGTATGAAATTCACA+TGG	-	chr4_3:13807697-13807716	None:intergenic	30.0%
TGCAGCATAATAGGAATATA+TGG	-	chr4_3:13807993-13808012	None:intergenic	30.0%
ATTTACTGGATCACAAATAG+AGG	+	chr4_3:13808159-13808178	Msa0631170:intron	30.0%
TATGAAATCAGTAGAAGATG+GGG	-	chr4_3:13808277-13808296	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	13805882	13811667	13805882	ID=Msa0631170;Name=Msa0631170
chr4_3	mRNA	13805882	13811667	13805882	ID=Msa0631170-mRNA-1;Parent=Msa0631170;Name=Msa0631170-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|0\|0.5\|1\|0\|1\|2\|237\|335
chr4_3	exon	13805882	13806122	13805882	ID=Msa0631170-mRNA-1:exon:3869;Parent=Msa0631170-mRNA-1
chr4_3	exon	13810664	13811667	13810664	ID=Msa0631170-mRNA-1:exon:3870;Parent=Msa0631170-mRNA-1
chr4_3	CDS	13805882	13806122	13805882	ID=Msa0631170-mRNA-1:cds;Parent=Msa0631170-mRNA-1
chr4_3	CDS	13810664	13811430	13810664	ID=Msa0631170-mRNA-1:cds;Parent=Msa0631170-mRNA-1
chr4_3	three_prime_UTR	13811431	13811667	13811431	ID=Msa0631170-mRNA-1:three_prime_utr;Parent=Msa0631170-mRNA-1

Gene Sequence

>Msa0631170

ATGGAACCAGAACAACAACCACCAACTCTCACGGCGGTGCACGACGGAAGCGGTGACGAAGGTTTAGCCGCATTAGGCGAAGGCGGCGAAGGAAGTAGCGGTAGCAAAGTGAAAGGACCTTGGTCTCCTGAAGAAGACGCCATTCTCAGTCGTCTTGTTAGTCAGTTCGGTGCTAGAAACTGGAGTTTGATTGCTCGTGGAATTTCTGGAAGATCGGGGAAGTCGTGCCGGCTCCGATGGTATGAGGAGGACCGGATCATAGTTGCTGCTCATGCAATCCATGGAAACAAATGGGCAGCCATTGCTAGGCTTCTGCCAGGAAGAACAGATAATGCCATTAAGAACCACTGGAATTCTACTCTGAGGCGTCGAGGAATTGGGGGAGTTGAACATGATAATACTAAGTTAGAATCTAGTAACATAGGGGGAAATATCAGCTTGGAGAAAGCCAAAGCATCATCTGAAGAAACTCTATCATGTGGAGATGTTAATTCTTTGAAATCCTCAGAAGGAAGAGATGTTAGTTCTATGGAGATTGTGGATGATAAAAATGAAGACAAAGCAAGGACTGATGTTCAATTATACCATGAAGTCAGGGATCCACCGACCCTTTTTAAGCCAGTAGCACGTGTAAGTGCTTTTAATGCGTATAACGCTTTCAATGGTTCCCAACCTTCAACATCAGCTCCAAGACCTGTTCCAATGCAAGGACCTATTTTACATTCACCAAAATCAGATGCGGAAATTTGTAAAATGCTTAACAGAACTATTGTCGACCGGTCAGTGCCTAATCAGTGTGGTCATGGATGCTGCTCATCTCTTGGTAACAACTCCAAAAGCTCTTTGTTGGGACCAGACTTCATTGAATATTCAGAACCTCAATCTTTCACAAGTTTTGAGTTGGCTGCAATAGCTACAGACATTAGTAACCTTGCTTGGCTTAAAAGTGGATTGGAGAACAGCAGCGTCAAAATGATGGGTGATACTGCTGGCAGGGTTAATATCTAA

Protein sequence

>Msa0631170

MEPEQQPPTLTAVHDGSGDEGLAALGEGGEGSSGSKVKGPWSPEEDAILSRLVSQFGARNWSLIARGISGRSGKSCRLRWYEEDRIIVAAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGIGGVEHDNTKLESSNIGGNISLEKAKASSEETLSCGDVNSLKSSEGRDVSSMEIVDDKNEDKARTDVQLYHEVRDPPTLFKPVARVSAFNAYNAFNGSQPSTSAPRPVPMQGPILHSPKSDAEICKMLNRTIVDRSVPNQCGHGCCSSLGNNSKSSLLGPDFIEYSEPQSFTSFELAAIATDISNLAWLKSGLENSSVKMMGDTAGRVNI*