AlfalfaGEDB | Msa0632720

M. sativa cultivar zhongmu-4 / Msa0632720

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0012505 GO:0016020 GO:0016021 GO:0031224 GO:0031974 GO:0031981 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0070013
PFAM: PF00168.33

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0632720	XP_039688524.1	96.315	1194	28	1	1	1178	1	1194	0.0	2380

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0632720	sp\|Q9FL59\|FTIP1_ARATH	70.596	789	211	5	408	1178	9	794	0.0	1208

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0108880	Msa0632720	0.804680	1.923441e-49	-8.615850e-47
Msa0418970	Msa0632720	0.807900	4.033270e-50	-8.615850e-47

Showing 1 to 2 of 2 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0632720	MtrunA17_Chr4g0010751	96.315	1194	28	1	1	1178	1	1194	0.0	2380
Msa0632720	MtrunA17_Chr3g0087501	78.799	816	146	5	389	1178	8	822	0.0	1355
Msa0632720	MtrunA17_Chr1g0174581	70.469	789	213	4	408	1178	11	797	0.0	1197
Msa0632720	MtrunA17_Chr7g0258331	68.766	762	221	7	429	1178	19	775	0.0	1115
Msa0632720	MtrunA17_Chr1g0174761	67.779	779	230	8	410	1178	7	774	0.0	1100
Msa0632720	MtrunA17_Chr4g0033151	66.026	780	241	8	408	1178	6	770	0.0	1055
Msa0632720	MtrunA17_Chr5g0397601	63.957	738	254	6	445	1178	278	1007	0.0	1021
Msa0632720	MtrunA17_Chr5g0397601	39.855	138	82	1	1	138	4	140	2.30e-23	107
Msa0632720	MtrunA17_Chr4g0014711	58.458	804	321	6	382	1178	247	1044	0.0	959
Msa0632720	MtrunA17_Chr4g0014711	33.696	184	95	5	2	183	3	161	8.69e-19	92.8

Showing 1 to 10 of 27 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0632720	AT5G48060.1	73.834	772	188	5	419	1178	267	1036	0.0	1222
Msa0632720	AT5G48060.1	42.586	263	105	7	2	259	6	227	5.57e-44	174
Msa0632720	AT5G06850.1	70.596	789	211	5	408	1178	9	794	0.0	1208
Msa0632720	AT3G57880.4	67.862	781	225	10	410	1178	7	773	0.0	1112
Msa0632720	AT3G57880.2	67.862	781	225	10	410	1178	7	773	0.0	1112
Msa0632720	AT3G57880.3	67.862	781	225	10	410	1178	7	773	0.0	1112
Msa0632720	AT3G57880.1	67.862	781	225	10	410	1178	7	773	0.0	1112
Msa0632720	AT1G51570.1	67.308	780	234	8	410	1178	7	776	0.0	1098
Msa0632720	AT5G12970.1	67.310	777	229	9	411	1178	9	769	0.0	1087
Msa0632720	AT4G11610.2	64.315	737	251	6	445	1178	280	1007	0.0	1034

Showing 1 to 10 of 35 entries

Previous1 2 3 4Next

Find 256 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCTTGGTTGTTGATT+GGG	0.326006	4_3:+17155053	None:intergenic
AAACATGGTATCCACCTTCA+AGG	0.464609	4_3:+17153676	None:intergenic
AAAGCAAAGGATCTTACTCC+AGG	0.544999	4_3:-17154542	Msa0632720:CDS
AAATCTTGGTCTTCAGTACT+TGG	0.384869	4_3:+17153982	None:intergenic
AACAAGAAGTGGATAAGAAT+TGG	0.390724	4_3:+17153263	None:intergenic
AACATGTAGAGAAAACAAGT+CGG	0.710804	4_3:+17152811	None:intergenic
AACGAGAATGAACCGGTCTG+TGG	0.660596	4_3:+17153790	None:intergenic
AACTCTTCGTCAAGTTCATC+AGG	0.431131	4_3:+17152703	None:intergenic
AAGAAATTACTCGGAACAGA+AGG	0.581611	4_3:+17152403	None:intergenic
AAGAGACGACCGCGACCACA+AGG	0.557068	4_3:-17155152	Msa0632720:CDS

Showing 1 to 10 of 256 entries

Previous1 2 3 4 5…26Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTCAAAGTCTACTTCAACAA+AGG	+	chr4_3:17152439-17152458	None:intergenic	30.0%
AGATTCTTCAATGGAGTAAT+TGG	+	chr4_3:17152982-17153001	None:intergenic	30.0%
ATTGTGATTAGATTCTCTTG+TGG	+	chr4_3:17153134-17153153	None:intergenic	30.0%
TTGTATCTTTCATCATACCT+AGG	+	chr4_3:17153311-17153330	None:intergenic	30.0%
TGATGAAAGATACAATCTCA+AGG	-	chr4_3:17153316-17153335	Msa0632720:CDS	30.0%
GATGAAAGATACAATCTCAA+GGG	-	chr4_3:17153317-17153336	Msa0632720:CDS	30.0%
TAAAATCCTTGGTTGTTGAT+TGG	+	chr4_3:17153345-17153364	None:intergenic	30.0%
TTGTATCTTTCATCATACCT+AGG	+	chr4_3:17153311-17153330	None:intergenic	30.0%
TGATGAAAGATACAATCTCA+AGG	-	chr4_3:17153316-17153335	Msa0632720:CDS	30.0%
GATGAAAGATACAATCTCAA+GGG	-	chr4_3:17153317-17153336	Msa0632720:CDS	30.0%

Showing 1 to 10 of 297 entries

Previous1 2 3 4 5…30Next

Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	17152366	17156050	17152366	ID=Msa0632720;Name=Msa0632720
chr4_3	mRNA	17152366	17156050	17152366	ID=Msa0632720-mRNA-1;Parent=Msa0632720;Name=Msa0632720-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|0\|0\|1\|1\|1\|2\|0\|1178
chr4_3	exon	17154715	17156050	17154715	ID=Msa0632720-mRNA-1:exon:4797;Parent=Msa0632720-mRNA-1
chr4_3	exon	17152366	17154566	17152366	ID=Msa0632720-mRNA-1:exon:4796;Parent=Msa0632720-mRNA-1
chr4_3	CDS	17154715	17156050	17154715	ID=Msa0632720-mRNA-1:cds;Parent=Msa0632720-mRNA-1
chr4_3	CDS	17152366	17154566	17152366	ID=Msa0632720-mRNA-1:cds;Parent=Msa0632720-mRNA-1

Gene Sequence

>Msa0632720

ATGAAACTGATAGTAGAGGTTATTAATGCTCATGATCTTATGCCAAAAGATGGTGAAGGATCAGCTAGTACCTTTGTTGAAGTAGACTTTGAAAACCAATTAAGCAGAACAAGAACTGTCCCAAAAAATCTCAACCCTACTTGGAATCAAAAACTTGTCTTTAATTTAGATACAACCAAACCTTACCATCACAAAACTATTGAAGTCTCCGTCTACAACGATAGGAGACAACCGATCCCTGGCCGAAACTTCCTCGGAAGGGTAAGAATTCCTTGCTCAAATATTGTTAAAGAAGGTGATGAAGTGTATCAGATTTTACCACTAGAAAATAAGTGGTTTTTTTCATCTGTTAAGGGTGAGATTGGCCTAAAAGTTTACATTGCATCAGAGTCCAAAGCTAAAGATTTTTCTCCCATTTTCTCATCAAAACTAGAAAAACTCTCACCTTCTACTCCTAAACAAGAACCAGAATCCACTGATACTAACCTTCCTCCTCTCCACGGTACTCCCTCAACCACAGAAACATTAGAAGCTGATCCTAACGAAGAAGGTTCTGCACTTGATGCCTCAAAAGAAACAACAGAAGTAGAAAAAGTATATTCTGTTGCTGCATCCAATTACTCCATTGAAGAATCTCAGTCTAGTAGCATTGATATTGATCAAGAGCCAAAGATAGAGATCGAAGAACCTGTTGAACAGATATCTTCTCAAAAACTAGACAAACATCAAGTTCATCAGCAACCAAGAATTTCAATAAAGAAAAGACCACAAGAGAATCTAATCACAATGCACTCAGTTGATCCTCAACTTCAATCTAGCCGTGCCGAAAACTATAATCACAGAAATGACTCCAACATGCAGCCAAGGATTTCAATCAAGAGACGACCGCGACCACAAGGTATTCCTCCATCAACGACATACTCAGTTAATCCACAAGTCCATCCTAGGTATGATGAAAGATACAATCTCAAGGGACCCAATCAACAACCAAGGATTTTAGTAGAGACACCTCGGCATGTTTCTTCACCCCCAAGGCATTGTGAAGATTCGCAAGGTATACCTTCATCAACAACATACTCAGTTAATCCACAAGTCCATCCTAGGTATGATGAAAGATACAATCTCAAGGGAACCAACCAACAACCAAGGATTTTAGTAGAGACACCTCGACATGTTGCTTCATCTCCAAGGCACGGTGTTGATCCGCAAGTCCACACTAGCAATGACGAAAACTACAGTGTCGAGGAAACTACTAATCCACAGATTGGTGAAAAGTGGCCCAGTGGTGGAGCTTATGATGGAAGAAAATGGACGAGTAGTGGTGAAAGACTCACCATGAAAGCAAAGGATCTTACTCCAGGAACAATCACTTCAAGCTGTGATCCTTATGTGGAAGTGAAGCTAGGGAACTATAGAGGAAGAACAAAGCATTTTGAGAAGAAATTGAATCCAGAGTGGAACCAAGTATTTGCTTTTTCCAAAGACCGGATTCAATCTTCAGTTCTTGAAGTCTTTGTCAAAGATAAAGAAATGGTAGGAAGAGATGATTATCTAGGAAGAGTGATCTTCGACCTCGATGAGATTCCAACAAGAGTTCCACCAGATAGTCCACTGGCTCCTCAATGGTACAGACTCCAACACTTGCGAGGCGAAGGTATGGTGAGAGGCGACATTATGCTCGCAGTTTGGATGGGAACACAAGCTGATGAAGCTTTCTCAGATGCTTGGCATTCTGATGCTGCTACTGTCTACGGTGAAGGTGTTTTCAACATCAGATCAAAGGTTTATGTGTCTCCAAAACTATGGTATTTAAGAGTCAATGTTATTGAAGCACAAGATGTCATCCCGAGTGACAGAAACCGCTTACCGGAGGTTTCTGTCAAGGCTCAATTAGGCTGCCAAGTACTGAAGACCAAGATTTGTTCCACTAGAACAACTACTCCACTTTGGAATGAAGATTTGGTTTTTGTAGCAGCTGAACCATTTGAGGAGCAGTTGACAATAACTGTGGAGGATCATGTGCAACCTTCAAAAGATGAGGTACTTGGGAGGATAAGCTTACCTTTGAACCTTTTTGAGAAGAGACTAGACCACAGACCGGTTCATTCTCGTTGGTTTAGCCTTGAGAAATTTGGTTTTGGTGCGCTAGAAGGTGATAGAAGAAATGAGCAGAAATTTTCAAGTAGGATTCATCTTAGAGTTTGCCTTGAAGGTGGATACCATGTTTTAGATGAATCCACTTTGTACATTAGTGATCAAAGACCAACAGCAAGACAGCTATGGAAGCAGCCTATTGGAATACTTGAGATGGGCATCTTAGGAGCAAAAGGGCTTCTCCCTATGAAGATGAAGGATGGTCATGGTAGCACAGATGCATACTGTGTTGCTAAATATGGTCAGAAATGGATCAGAACCAGAACACTTTTAGACACTTTCAGTCCCAAATGGAATGAGCAATACACATGGGAGGTTTATGATCCTTGCACTGTCATAACACTAGGTGTTTTTGACAATTGTCATTTAGGTGAAAAAGCTCCCAGTGGAAGTTCAATTAAAGACTCAAGAATTGGAAAGGTAAGGATTAGGCTATCAACACTTGAAGCCAATAAAATTTACACCAATTCTTATCCACTTCTTGTTTTACACCAACATGGAGTTAAGAAAATGGGTGAGCTTCAACTCACAGTGAGGTTCACTGCACTCTCACTAGCTAACATGTTTCATATTTATGGCCAACCTTTACTCCCAAAGATGCATTATTTACAACCTTTCACAGTTAATCAAATTGACAACTTAAGGTACCAAGCAATGAATATTGTTGCAATGAGGCTTGGTAGAGCTGAACCGCCACTCAGGAAGGAAGTTGTTGAGTACATGCTGGATGTTGATTCCAATATATGGAGCATGAGAAGAAGCAAAGCTAACTTCTTTCGTGTGATGTCCCTTTTCTCCGGTTTGATTACAATCGGAAGATGGTTCAATGACGTTTGTCATTGGAAGAATCACATTACATCAATACTAGTTCACATCCTCTTTTTGATACTGATATGGTATCCAGAACTTATACTACCGACTTGTTTTCTCTACATGTTCTTGATTGGCTTATGGAACTATCGGTTTCGTCCGAGACAACCGCCTCACATGGATACTAAACTCTCATGGGCAGAGTCTGTTCATCCTGATGAACTTGACGAAGAGTTTGACACATTTCCAACATCAAGATCACATGATGCAGTGAGAATGAGGTACGATAGACTTAGAACCGTTGCAGGTAGGATTCAAACAATTGTTGGCGACATAGCTACACAAGGGGAGAGGTTTATGTCTCTACTGAGCTGGAGAGACCCTAGAGGAACTACACTGTTTGTGTTGTTTAGCCTTTGTGCAGCTGTGATTTTCTATGCAACACCATTTAGAGTTGTGGTTTTGGTGACAGGTTTGTATAATTTGAGACATCCAAAGTTTAGGAACAAACTACCTTCTGTTCCGAGTAATTTCTTCAAGAGGCTCCCTGCTAGAACAGATAGTTTACTGTAA

Protein sequence

>Msa0632720

MKLIVEVINAHDLMPKDGEGSASTFVEVDFENQLSRTRTVPKNLNPTWNQKLVFNLDTTKPYHHKTIEVSVYNDRRQPIPGRNFLGRVRIPCSNIVKEGDEVYQILPLENKWFFSSVKGEIGLKVYIASESKAKDFSPIFSSKLEKLSPSTPKQEPESTDTNLPPLHGTPSTTETLEADPNEEGSALDASKETTEVEKVYSVAASNYSIEESQSSSIDIDQEPKIEIEEPVEQISSQKLDKHQVHQQPRISIKKRPQENLITMHSVDPQLQSSRAENYNHRNDSNMQPRISIKRRPRPQGIPPSTTYSVNPQVHPRYDERYNLKGPNQQPRILVETPRHVSSPPRHCEDSQGIPSSTTYSVNPQVHPRYDERYNLKGTNQQPRILVETPRHVASSPRHGVDPQVHTSNDENYSVEETTNPQIGEKWPSGGAYDGRKWTSSGERLTMKAKDLTPGTITSSCDPYVEVKLGNYRGRTKHFEKKLNPEWNQVFAFSKDRIQSSVLEVFVKDKEMVGRDDYLGRVIFDLDEIPTRVPPDSPLAPQWYRLQHLRGEGMVRGDIMLAVWMGTQADEAFSDAWHSDAATVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVIPSDRNRLPEVSVKAQLGCQVLKTKICSTRTTTPLWNEDLVFVAAEPFEEQLTITVEDHVQPSKDEVLGRISLPLNLFEKRLDHRPVHSRWFSLEKFGFGALEGDRRNEQKFSSRIHLRVCLEGGYHVLDESTLYISDQRPTARQLWKQPIGILEMGILGAKGLLPMKMKDGHGSTDAYCVAKYGQKWIRTRTLLDTFSPKWNEQYTWEVYDPCTVITLGVFDNCHLGEKAPSGSSIKDSRIGKVRIRLSTLEANKIYTNSYPLLVLHQHGVKKMGELQLTVRFTALSLANMFHIYGQPLLPKMHYLQPFTVNQIDNLRYQAMNIVAMRLGRAEPPLRKEVVEYMLDVDSNIWSMRRSKANFFRVMSLFSGLITIGRWFNDVCHWKNHITSILVHILFLILIWYPELILPTCFLYMFLIGLWNYRFRPRQPPHMDTKLSWAESVHPDELDEEFDTFPTSRSHDAVRMRYDRLRTVAGRIQTIVGDIATQGERFMSLLSWRDPRGTTLFVLFSLCAAVIFYATPFRVVVLVTGLYNLRHPKFRNKLPSVPSNFFKRLPARTDSLL*