Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0418970 | XP_013460978.1 | 99.008 | 706 | 7 | 0 | 1 | 706 | 1 | 706 | 0.0 | 1458 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0418970 | sp|Q9SS87|SEOB_ARATH | 40.443 | 722 | 401 | 11 | 4 | 704 | 14 | 727 | 0.0 | 553 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0418970 | A0A072UZM7 | 99.008 | 706 | 7 | 0 | 1 | 706 | 1 | 706 | 0.0 | 1458 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002580 | Msa0418970 | 0.802863 | 4.584697e-49 | -8.615850e-47 |
| Msa0005890 | Msa0418970 | 0.812096 | 5.035720e-51 | -8.615850e-47 |
| Msa0015150 | Msa0418970 | 0.889876 | 1.634580e-73 | -8.615850e-47 |
| Msa0029960 | Msa0418970 | 0.844267 | 8.404661e-59 | -8.615850e-47 |
| Msa0029970 | Msa0418970 | 0.869250 | 3.564840e-66 | -8.615850e-47 |
| Msa0034810 | Msa0418970 | 0.821987 | 3.013327e-53 | -8.615850e-47 |
| Msa0043290 | Msa0418970 | 0.801861 | 7.375068e-49 | -8.615850e-47 |
| Msa0061350 | Msa0418970 | 0.830978 | 2.166099e-55 | -8.615850e-47 |
| Msa0064120 | Msa0418970 | 0.871266 | 7.792715e-67 | -8.615850e-47 |
| Msa0071850 | Msa0418970 | 0.896775 | 2.667593e-76 | -8.615850e-47 |
| Msa0071860 | Msa0418970 | 0.900112 | 1.014983e-77 | -8.615850e-47 |
| Msa0071880 | Msa0418970 | 0.856836 | 2.456677e-62 | -8.615850e-47 |
| Msa0108880 | Msa0418970 | 0.903646 | 2.797884e-79 | -8.615850e-47 |
| Msa0125200 | Msa0418970 | 0.847896 | 8.652333e-60 | -8.615850e-47 |
| Msa0125210 | Msa0418970 | 0.876080 | 1.854867e-68 | -8.615850e-47 |
| Msa0129940 | Msa0418970 | 0.802158 | 6.407479e-49 | -8.615850e-47 |
| Msa0137210 | Msa0418970 | 0.800884 | 1.168701e-48 | -8.615850e-47 |
| Msa0155180 | Msa0418970 | 0.854183 | 1.458132e-61 | -8.615850e-47 |
| Msa0164400 | Msa0418970 | 0.855046 | 8.203546e-62 | -8.615850e-47 |
| Msa0175730 | Msa0418970 | 0.805491 | 1.301341e-49 | -8.615850e-47 |
| Msa0188610 | Msa0418970 | 0.833107 | 6.449552e-56 | -8.615850e-47 |
| Msa0191020 | Msa0418970 | 0.817891 | 2.607017e-52 | -8.615850e-47 |
| Msa0194820 | Msa0418970 | 0.855912 | 4.587312e-62 | -8.615850e-47 |
| Msa0194840 | Msa0418970 | 0.853244 | 2.715655e-61 | -8.615850e-47 |
| Msa0211030 | Msa0418970 | 0.813891 | 2.034589e-51 | -8.615850e-47 |
| Msa0230800 | Msa0418970 | 0.811197 | 7.898080e-51 | -8.615850e-47 |
| Msa0230870 | Msa0418970 | 0.810596 | 1.065683e-50 | -8.615850e-47 |
| Msa0233320 | Msa0418970 | 0.825111 | 5.601245e-54 | -8.615850e-47 |
| Msa0369790 | Msa0418970 | 0.800271 | 1.558649e-48 | -8.615850e-47 |
| Msa0385220 | Msa0418970 | 0.808692 | 2.734045e-50 | -8.615850e-47 |
| Msa0405680 | Msa0418970 | 0.846151 | 2.600946e-59 | -8.615850e-47 |
| Msa0415610 | Msa0418970 | 0.824808 | 6.604509e-54 | -8.615850e-47 |
| Msa0418970 | Msa0424490 | 0.831088 | 2.035137e-55 | -8.615850e-47 |
| Msa0418970 | Msa0432320 | 0.802434 | 5.622031e-49 | -8.615850e-47 |
| Msa0418970 | Msa0435210 | 0.815232 | 1.027072e-51 | -8.615850e-47 |
| Msa0418970 | Msa0435550 | 0.814389 | 1.579718e-51 | -8.615850e-47 |
| Msa0418970 | Msa0436910 | 0.802982 | 4.332349e-49 | -8.615850e-47 |
| Msa0418970 | Msa0460550 | 0.962212 | 1.311283e-120 | -8.615850e-47 |
| Msa0418970 | Msa0460630 | 0.833172 | 6.212448e-56 | -8.615850e-47 |
| Msa0418970 | Msa0465400 | 0.857030 | 2.154172e-62 | -8.615850e-47 |
| Msa0418970 | Msa0471460 | 0.827533 | 1.484668e-54 | -8.615850e-47 |
| Msa0418970 | Msa0471540 | 0.839675 | 1.374696e-57 | -8.615850e-47 |
| Msa0418970 | Msa0510480 | 0.810550 | 1.090034e-50 | -8.615850e-47 |
| Msa0418970 | Msa0523190 | 0.800139 | 1.658102e-48 | -8.615850e-47 |
| Msa0418970 | Msa0528570 | 0.807794 | 4.247067e-50 | -8.615850e-47 |
| Msa0418970 | Msa0543660 | 0.806532 | 7.857567e-50 | -8.615850e-47 |
| Msa0418970 | Msa0562560 | 0.818951 | 1.499194e-52 | -8.615850e-47 |
| Msa0418970 | Msa0562620 | 0.837957 | 3.824672e-57 | -8.615850e-47 |
| Msa0418970 | Msa0579780 | 0.807867 | 4.097877e-50 | -8.615850e-47 |
| Msa0418970 | Msa0584420 | 0.812244 | 4.673507e-51 | -8.615850e-47 |
| Msa0418970 | Msa0609300 | 0.823227 | 1.551221e-53 | -8.615850e-47 |
| Msa0418970 | Msa0616510 | 0.833405 | 5.435150e-56 | -8.615850e-47 |
| Msa0418970 | Msa0632720 | 0.807900 | 4.033270e-50 | -8.615850e-47 |
| Msa0418970 | Msa0640200 | 0.819256 | 1.277450e-52 | -8.615850e-47 |
| Msa0418970 | Msa0649840 | 0.846920 | 1.603437e-59 | -8.615850e-47 |
| Msa0418970 | Msa0650660 | 0.803728 | 3.035309e-49 | -8.615850e-47 |
| Msa0418970 | Msa0650750 | 0.805236 | 1.471758e-49 | -8.615850e-47 |
| Msa0418970 | Msa0657440 | 0.835698 | 1.441830e-56 | -8.615850e-47 |
| Msa0418970 | Msa0661150 | 0.805788 | 1.127342e-49 | -8.615850e-47 |
| Msa0418970 | Msa0678490 | 0.815688 | 8.130728e-52 | -8.615850e-47 |
| Msa0418970 | Msa0691910 | 0.828260 | 9.923074e-55 | -8.615850e-47 |
| Msa0418970 | Msa0693890 | 0.804234 | 2.382693e-49 | -8.615850e-47 |
| Msa0418970 | Msa0699840 | 0.846732 | 1.805044e-59 | -8.615850e-47 |
| Msa0418970 | Msa0701720 | 0.808129 | 3.604047e-50 | -8.615850e-47 |
| Msa0418970 | Msa0713960 | 0.805561 | 1.257612e-49 | -8.615850e-47 |
| Msa0418970 | Msa0738700 | 0.809924 | 1.487345e-50 | -8.615850e-47 |
| Msa0418970 | Msa0740710 | 0.800477 | 1.415214e-48 | -8.615850e-47 |
| Msa0418970 | Msa0741220 | 0.815075 | 1.113122e-51 | -8.615850e-47 |
| Msa0418970 | Msa0782750 | 0.810017 | 1.420762e-50 | -8.615850e-47 |
| Msa0418970 | Msa0819170 | 0.812397 | 4.328291e-51 | -8.615850e-47 |
| Msa0418970 | Msa0829300 | 0.810679 | 1.022189e-50 | -8.615850e-47 |
| Msa0418970 | Msa0829330 | 0.803907 | 2.785650e-49 | -8.615850e-47 |
| Msa0418970 | Msa0846730 | 0.806563 | 7.739603e-50 | -8.615850e-47 |
| Msa0418970 | Msa0859290 | 0.814586 | 1.428456e-51 | -8.615850e-47 |
| Msa0418970 | Msa0894790 | 0.811632 | 6.354395e-51 | -8.615850e-47 |
| Msa0418970 | Msa0902940 | 0.803785 | 2.953593e-49 | -8.615850e-47 |
| Msa0418970 | Msa1009950 | 0.802344 | 5.865587e-49 | -8.615850e-47 |
| Msa0418970 | Msa1014320 | 0.853405 | 2.442789e-61 | -8.615850e-47 |
| Msa0418970 | Msa1042160 | 0.832616 | 8.540207e-56 | -8.615850e-47 |
| Msa0418970 | Msa1042190 | 0.830569 | 2.728560e-55 | -8.615850e-47 |
| Msa0418970 | Msa1055310 | 0.839255 | 1.767870e-57 | -8.615850e-47 |
| Msa0418970 | Msa1078820 | 0.808537 | 2.949836e-50 | -8.615850e-47 |
| Msa0418970 | Msa1123970 | 0.800506 | 1.396251e-48 | -8.615850e-47 |
| Msa0418970 | Msa1127960 | 0.805660 | 1.198942e-49 | -8.615850e-47 |
| Msa0418970 | Msa1167470 | 0.819338 | 1.224248e-52 | -8.615850e-47 |
| Msa0418970 | Msa1183980 | 0.818139 | 2.290429e-52 | -8.615850e-47 |
| Msa0418970 | Msa1223570 | 0.803681 | 3.103865e-49 | -8.615850e-47 |
| Msa0418970 | Msa1228420 | 0.820904 | 5.360880e-53 | -8.615850e-47 |
| Msa0418970 | Msa1265650 | 0.802002 | 6.897523e-49 | -8.615850e-47 |
| Msa0418970 | Msa1268630 | 0.833992 | 3.877574e-56 | -8.615850e-47 |
| Msa0418970 | Msa1284120 | 0.813622 | 2.331679e-51 | -8.615850e-47 |
| Msa0418970 | Msa1303560 | 0.807797 | 4.240421e-50 | -8.615850e-47 |
| Msa0418970 | Msa1303650 | 0.806832 | 6.793432e-50 | -8.615850e-47 |
| Msa0418970 | Msa1341890 | 0.836169 | 1.095099e-56 | -8.615850e-47 |
| Msa0418970 | Msa1384460 | 0.811455 | 6.940678e-51 | -8.615850e-47 |
| Msa0418970 | Msa1400010 | 0.810879 | 9.255333e-51 | -8.615850e-47 |
| Msa0418970 | Msa1405340 | 0.818850 | 1.580325e-52 | -8.615850e-47 |
| Msa0418970 | Msa1415540 | 0.800702 | 1.273214e-48 | -8.615850e-47 |
| Msa0418970 | Msa1433790 | 0.840586 | 7.953183e-58 | -8.615850e-47 |
| Msa0270340 | Msa0418970 | 0.834484 | 2.917743e-56 | -8.615850e-47 |
| Msa0314170 | Msa0418970 | 0.807104 | 5.949699e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0418970 | MtrunA17_Chr3g0116601 | 99.008 | 706 | 7 | 0 | 1 | 706 | 1 | 706 | 0.0 | 1458 |
| Msa0418970 | MtrunA17_Chr8g0381301 | 52.279 | 702 | 321 | 8 | 15 | 706 | 7 | 704 | 0.0 | 743 |
| Msa0418970 | MtrunA17_Chr7g0226571 | 45.364 | 701 | 367 | 11 | 17 | 704 | 12 | 709 | 0.0 | 601 |
| Msa0418970 | MtrunA17_Chr1g0186841 | 32.703 | 688 | 403 | 17 | 27 | 704 | 24 | 661 | 1.49e-108 | 344 |
| Msa0418970 | MtrunA17_Chr1g0187041 | 33.578 | 682 | 400 | 21 | 30 | 704 | 26 | 661 | 1.67e-104 | 333 |
| Msa0418970 | MtrunA17_Chr1g0186851 | 31.241 | 685 | 416 | 19 | 27 | 704 | 23 | 659 | 6.08e-103 | 329 |
| Msa0418970 | MtrunA17_Chr1g0186861 | 31.159 | 690 | 412 | 21 | 27 | 704 | 23 | 661 | 1.15e-99 | 320 |
| Msa0418970 | MtrunA17_Chr1g0186911 | 32.508 | 606 | 353 | 19 | 108 | 704 | 1 | 559 | 1.52e-94 | 304 |
| Msa0418970 | MtrunA17_Chr1g0165791 | 28.161 | 696 | 429 | 22 | 30 | 704 | 31 | 676 | 6.70e-77 | 261 |
| Msa0418970 | MtrunA17_Chr1g0186981 | 25.648 | 694 | 425 | 24 | 30 | 704 | 40 | 661 | 2.33e-56 | 204 |
| Msa0418970 | MtrunA17_Chr1g0186991 | 25.775 | 710 | 413 | 26 | 29 | 704 | 36 | 665 | 1.42e-53 | 196 |
| Msa0418970 | MtrunA17_Chr1g0187001 | 26.346 | 706 | 403 | 27 | 29 | 704 | 16 | 634 | 2.85e-49 | 183 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0418970 | AT3G01680.1 | 40.443 | 722 | 401 | 11 | 4 | 704 | 14 | 727 | 0.0 | 553 |
| Msa0418970 | AT3G01670.1 | 37.047 | 718 | 399 | 11 | 19 | 706 | 128 | 822 | 5.96e-153 | 464 |
| Msa0418970 | AT3G01670.2 | 37.047 | 718 | 399 | 11 | 19 | 706 | 152 | 846 | 1.04e-152 | 464 |
| Msa0418970 | AT1G67790.1 | 29.387 | 701 | 435 | 20 | 22 | 702 | 4 | 664 | 1.14e-95 | 310 |
Find 155 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAATTATGTTATATTTAT+AGG | 0.151281 | 3_2:-66858858 | Msa0418970:three_prime_UTR |
| GATATGGATTTGGGGAAATT+TGG | 0.167832 | 3_2:-66860002 | Msa0418970:CDS |
| TCAAGATTTCATCAACAATT+TGG | 0.168351 | 3_2:+66862438 | None:intergenic |
| TGACATCAATTTGGTTCTTT+TGG | 0.182104 | 3_2:-66859547 | Msa0418970:CDS |
| TGGCATTGATCCTGCACTTT+TGG | 0.203402 | 3_2:-66859906 | Msa0418970:CDS |
| CAATGTCAGGTAGTTGTTTA+AGG | 0.206044 | 3_2:+66861293 | None:intergenic |
| TAGATGGAACTACAAAATTA+AGG | 0.217891 | 3_2:-66860495 | Msa0418970:CDS |
| TATTAGCTGGCAAGCTATTA+AGG | 0.221699 | 3_2:-66858754 | Msa0418970:three_prime_UTR |
| CTCTTCACATGATATGGATT+TGG | 0.242306 | 3_2:-66860012 | Msa0418970:CDS |
| AGCATTGAATGATTATATTA+AGG | 0.248515 | 3_2:-66859291 | Msa0418970:CDS |
| TTCCAAACGTGACATCAATT+TGG | 0.261192 | 3_2:-66859556 | Msa0418970:CDS |
| ATATCATGTGAAGAGCATTT+TGG | 0.277867 | 3_2:+66860020 | None:intergenic |
| AAAATGCTCTTCACATGATA+TGG | 0.284577 | 3_2:-66860018 | Msa0418970:CDS |
| TTAATTATGTTATATTTATA+GGG | 0.288088 | 3_2:-66858857 | Msa0418970:three_prime_UTR |
| TCTTCACATGATATGGATTT+GGG | 0.291284 | 3_2:-66860011 | Msa0418970:CDS |
| ATATTCCTATTGCTACCTAT+TGG | 0.303164 | 3_2:-66861117 | Msa0418970:CDS |
| TATTGAGGCATTTCTCTATC+TGG | 0.308636 | 3_2:-66860602 | Msa0418970:CDS |
| TGTAATAGGCTTATTCTTCC+TGG | 0.311032 | 3_2:-66859248 | Msa0418970:CDS |
| TATTCCTATTGCTACCTATT+GGG | 0.336914 | 3_2:-66861116 | Msa0418970:CDS |
| AGCAACCACATCATTGTAAT+AGG | 0.338223 | 3_2:-66859262 | Msa0418970:CDS |
| CATGTTGCTTTGTCCACAAC+TGG | 0.342091 | 3_2:+66860214 | None:intergenic |
| CATGTGCATTGTTGAATTCA+AGG | 0.348701 | 3_2:-66861197 | Msa0418970:CDS |
| AGCCTTGAGTTGCTTGTTGA+TGG | 0.355975 | 3_2:-66859926 | Msa0418970:CDS |
| TCACAAATTGCAAGTCTCAT+AGG | 0.363224 | 3_2:-66861067 | Msa0418970:CDS |
| AACCAAATTGATGTCACGTT+TGG | 0.365900 | 3_2:+66859554 | None:intergenic |
| TGTTAGAAGCAGCTGATAAC+TGG | 0.369862 | 3_2:+66862579 | None:intergenic |
| AGATGGAACTACAAAATTAA+GGG | 0.376780 | 3_2:-66860494 | Msa0418970:intron |
| CCTTGTGGAAGCAAGAGATT+TGG | 0.382186 | 3_2:-66859949 | Msa0418970:CDS |
| CTTATTCTTCCTGGGAGTAC+TGG | 0.385929 | 3_2:-66859239 | Msa0418970:CDS |
| GTTATTTGTTTATTTATGTA+AGG | 0.387551 | 3_2:-66858797 | Msa0418970:three_prime_UTR |
| TCTTCTTTCTCACTTGTGAA+TGG | 0.389160 | 3_2:+66859974 | None:intergenic |
| GCTCTTTGCTACCAAGCTAT+AGG | 0.395639 | 3_2:-66860816 | Msa0418970:intron |
| ATTGGAAACTACTGCTGCTT+TGG | 0.396203 | 3_2:-66862042 | Msa0418970:CDS |
| ACTGAATTTCTTGTTGTTGA+AGG | 0.404691 | 3_2:+66859586 | None:intergenic |
| TCATCAACAATTTGGATAAG+TGG | 0.405497 | 3_2:+66862446 | None:intergenic |
| TTTAAGGAGAGCCACAGATT+TGG | 0.410648 | 3_2:+66861309 | None:intergenic |
| AGTGACTTTGTGAGCAAGAC+TGG | 0.411930 | 3_2:+66860869 | None:intergenic |
| GTCAACACATCGATGGTCAT+TGG | 0.416467 | 3_2:+66858979 | None:intergenic |
| CATGCCATGGATAGCTAGAT+AGG | 0.425221 | 3_2:+66861419 | None:intergenic |
| ACATCGATTTCACGACCATC+AGG | 0.425726 | 3_2:+66862473 | None:intergenic |
| AAATGTTTATGTTTATTAGC+TGG | 0.426482 | 3_2:-66858767 | Msa0418970:three_prime_UTR |
| ATTTGTTTATTTATGTAAGG+TGG | 0.427450 | 3_2:-66858794 | Msa0418970:three_prime_UTR |
| ATGACCCAATAGGTAGCAAT+AGG | 0.437496 | 3_2:+66861112 | None:intergenic |
| TTTGTTTATTTATGTAAGGT+GGG | 0.440822 | 3_2:-66858793 | Msa0418970:three_prime_UTR |
| ATTAGCAAGCTGAAAACAAA+TGG | 0.451957 | 3_2:+66858721 | None:intergenic |
| CTGTAGAGGACCATCTGAAA+TGG | 0.452637 | 3_2:-66859399 | Msa0418970:CDS |
| TACGTGCAATCGGTGACTGC+AGG | 0.461607 | 3_2:+66859107 | None:intergenic |
| GTAATAGGCTTATTCTTCCT+GGG | 0.465122 | 3_2:-66859247 | Msa0418970:CDS |
| TAGGATTGAACAAGATGGTT+GGG | 0.466518 | 3_2:-66859318 | Msa0418970:CDS |
| TGCTGAATGTGGTCGTCAAA+TGG | 0.468093 | 3_2:-66859192 | Msa0418970:CDS |
| ACAGAATTCTCTGCAATGTC+AGG | 0.472157 | 3_2:+66861280 | None:intergenic |
| CAGCTATCATGCAAATGCTC+TGG | 0.476086 | 3_2:-66861484 | Msa0418970:CDS |
| CACTAGCCATGTTACTGAAA+AGG | 0.478680 | 3_2:+66862612 | None:intergenic |
| TTAATATAATCATTCAATGC+TGG | 0.481704 | 3_2:+66859293 | None:intergenic |
| TCTGAAATGGCTAGGGCTAA+AGG | 0.482330 | 3_2:-66859386 | Msa0418970:CDS |
| CGACGGTAGTGACCGAGGTT+GGG | 0.484160 | 3_2:-66859429 | Msa0418970:CDS |
| AATACTTCTGATGACCCAAT+AGG | 0.487922 | 3_2:+66861102 | None:intergenic |
| ATTCGATATGCTTGATGCGC+TGG | 0.489847 | 3_2:-66862015 | Msa0418970:CDS |
| TTTGTAGTTCCATCTATAAG+TGG | 0.489901 | 3_2:+66860502 | None:intergenic |
| ATCATTGCTCGAAGTGTTGA+GGG | 0.490421 | 3_2:-66862410 | Msa0418970:CDS |
| TATACAAAGATGCTAGATCA+AGG | 0.490563 | 3_2:-66860267 | Msa0418970:CDS |
| TTGATATACTTAATCACTGA+TGG | 0.491113 | 3_2:+66860109 | None:intergenic |
| AGCCTTCACAAGCTTGTTGA+GGG | 0.497030 | 3_2:+66861234 | None:intergenic |
| CACAAATTGCAAGTCTCATA+GGG | 0.500466 | 3_2:-66861066 | Msa0418970:CDS |
| TCCTTGTTGTAGATGACAGA+AGG | 0.509373 | 3_2:-66859764 | Msa0418970:intron |
| AGACACACTATGAGATGGTA+TGG | 0.509954 | 3_2:-66860240 | Msa0418970:CDS |
| ATACGTGCAATGTGACGGGC+AGG | 0.514312 | 3_2:-66858949 | Msa0418970:three_prime_UTR |
| TAACAGAATGCAGCTAAAGA+AGG | 0.515235 | 3_2:-66862561 | Msa0418970:CDS |
| ATCGTCCTTTGCATAAATCA+AGG | 0.519868 | 3_2:+66860531 | None:intergenic |
| ACTGATGGTTCAATAATGAA+AGG | 0.522705 | 3_2:+66860124 | None:intergenic |
| TCATGCAAATGCTCTGGAGG+TGG | 0.523089 | 3_2:-66861478 | Msa0418970:CDS |
| AATAACAGCAAATGCTGCTA+AGG | 0.524767 | 3_2:+66861381 | None:intergenic |
| GAGAGCCTTGATTTATGCAA+AGG | 0.526390 | 3_2:-66860536 | Msa0418970:CDS |
| GAGGACCATCTGAAATGGCT+AGG | 0.526776 | 3_2:-66859394 | Msa0418970:CDS |
| TTGTAGTTCCATCTATAAGT+GGG | 0.528941 | 3_2:+66860503 | None:intergenic |
| ATTCTTCCTGGGAGTACTGG+TGG | 0.530375 | 3_2:-66859236 | Msa0418970:CDS |
| AATCATTGCTCGAAGTGTTG+AGG | 0.530438 | 3_2:-66862411 | Msa0418970:CDS |
| CAGTCCACTCATGCCCCTGA+TGG | 0.532299 | 3_2:-66862488 | Msa0418970:CDS |
| AGGTTAGTCTTGAAGTACTA+AGG | 0.533267 | 3_2:-66860360 | Msa0418970:CDS |
| GAGTTAGAGATGGTCTATGT+AGG | 0.535445 | 3_2:-66859650 | Msa0418970:CDS |
| GTCTCATGTATGAATAATGT+TGG | 0.538001 | 3_2:-66858888 | Msa0418970:three_prime_UTR |
| CAGCCTTCACAAGCTTGTTG+AGG | 0.540942 | 3_2:+66861233 | None:intergenic |
| TCGACGGTAGTGACCGAGGT+TGG | 0.542386 | 3_2:-66859430 | Msa0418970:CDS |
| TTTCATCAGCCTCAGAAGCA+TGG | 0.544045 | 3_2:-66860899 | Msa0418970:CDS |
| CTGATGGTTCAATAATGAAA+GGG | 0.546133 | 3_2:+66860125 | None:intergenic |
| TTCATCAGCCTCAGAAGCAT+GGG | 0.546942 | 3_2:-66860898 | Msa0418970:CDS |
| TGAGCACTTGCAACAGACAT+AGG | 0.550601 | 3_2:+66861139 | None:intergenic |
| GGACTGAACTTGTTTCATCA+TGG | 0.553456 | 3_2:+66862505 | None:intergenic |
| ATAGGATTGAACAAGATGGT+TGG | 0.555371 | 3_2:-66859319 | Msa0418970:CDS |
| TAAACATGAGACAGATACAT+TGG | 0.555533 | 3_2:-66862060 | Msa0418970:CDS |
| TGGGAGGACAATCTTCCTTG+TGG | 0.557269 | 3_2:+66860040 | None:intergenic |
| CCAAATCTCTTGCTTCCACA+AGG | 0.558786 | 3_2:+66859949 | None:intergenic |
| GGATAACTCCCATGCTTCTG+AGG | 0.559482 | 3_2:+66860890 | None:intergenic |
| TTGGGTCATCAGAAGTATTG+TGG | 0.562834 | 3_2:-66861098 | Msa0418970:CDS |
| CAACGAACTCACCTATAGCT+TGG | 0.566046 | 3_2:+66860805 | None:intergenic |
| GCAGGGAATCACAATTCGAC+AGG | 0.568037 | 3_2:+66859125 | None:intergenic |
| TTAGCCCTAGCCATTTCAGA+TGG | 0.573010 | 3_2:+66859389 | None:intergenic |
| ACGACCATCAGGGGCATGAG+TGG | 0.576810 | 3_2:+66862484 | None:intergenic |
| TTGTTTATTTATGTAAGGTG+GGG | 0.577410 | 3_2:-66858792 | Msa0418970:three_prime_UTR |
| TGCCATCAACAAGCAACTCA+AGG | 0.577841 | 3_2:+66859924 | None:intergenic |
| CTTGGTAGCAAAGAGCAAGT+TGG | 0.579238 | 3_2:+66860823 | None:intergenic |
| CTATCATGCAAATGCTCTGG+AGG | 0.582216 | 3_2:-66861481 | Msa0418970:CDS |
| TCACACAATCAGCGCATCAA+TGG | 0.582986 | 3_2:-66859083 | Msa0418970:three_prime_UTR |
| ATACAAAGATGCTAGATCAA+GGG | 0.584269 | 3_2:-66860266 | Msa0418970:CDS |
| TACAAAGATGCTAGATCAAG+GGG | 0.585947 | 3_2:-66860265 | Msa0418970:CDS |
| CATCGATTTCACGACCATCA+GGG | 0.587965 | 3_2:+66862474 | None:intergenic |
| TGGATCAAGAGCTACTAGAA+TGG | 0.588037 | 3_2:+66860060 | None:intergenic |
| CATACCCAGTCCAAAAGTGC+AGG | 0.589037 | 3_2:+66859896 | None:intergenic |
| ATTGTGTGAATACGTGCAAT+CGG | 0.591452 | 3_2:+66859097 | None:intergenic |
| AAACACACTTGCCAAATCTG+TGG | 0.591889 | 3_2:-66861320 | Msa0418970:CDS |
| TGTAGTTCCATCTATAAGTG+GGG | 0.592031 | 3_2:+66860504 | None:intergenic |
| AGCTTCGACGGTAGTGACCG+AGG | 0.593982 | 3_2:-66859434 | Msa0418970:CDS |
| ATGACTGTGCTTAGCTTCGA+CGG | 0.596323 | 3_2:-66859446 | Msa0418970:CDS |
| ACGTGCAATCGGTGACTGCA+GGG | 0.598486 | 3_2:+66859108 | None:intergenic |
| CATTAACAAAATTTCCTGTG+AGG | 0.599891 | 3_2:-66861985 | Msa0418970:intron |
| AGGACCATCTGAAATGGCTA+GGG | 0.600106 | 3_2:-66859393 | Msa0418970:CDS |
| ATGAATACGTGCAATGTGAC+GGG | 0.600546 | 3_2:-66858953 | Msa0418970:three_prime_UTR |
| CAGTTGTGGACAAAGCAACA+TGG | 0.602977 | 3_2:-66860213 | Msa0418970:CDS |
| TTAAGTATATCAAAGAAGTG+TGG | 0.608259 | 3_2:-66860099 | Msa0418970:CDS |
| CTTGAATTCAACAATGCACA+TGG | 0.609877 | 3_2:+66861198 | None:intergenic |
| ATTACCTATCTAGCTATCCA+TGG | 0.610258 | 3_2:-66861423 | Msa0418970:CDS |
| TACAGAATATTGCCCAACCT+CGG | 0.610840 | 3_2:+66859417 | None:intergenic |
| ACTCAAAACTACAACATGGT+AGG | 0.611324 | 3_2:-66859502 | Msa0418970:CDS |
| GTAGTTCCATCTATAAGTGG+GGG | 0.611809 | 3_2:+66860505 | None:intergenic |
| TAGCAACTTCGAGTTAGAGA+TGG | 0.613468 | 3_2:-66859660 | Msa0418970:CDS |
| CTAGTAGCTCTTGATCCACA+AGG | 0.616181 | 3_2:-66860055 | Msa0418970:CDS |
| TCAGCACAAACAACTTTCTG+AGG | 0.617186 | 3_2:+66859209 | None:intergenic |
| AGATGAGAAGAAGCATATTG+AGG | 0.618660 | 3_2:-66860617 | Msa0418970:CDS |
| GATGGTATGGATTCCAGTTG+TGG | 0.618882 | 3_2:-66860227 | Msa0418970:CDS |
| CATGAATACGTGCAATGTGA+CGG | 0.619377 | 3_2:-66858954 | Msa0418970:three_prime_UTR |
| TGCCCTCAACAAGCTTGTGA+AGG | 0.619838 | 3_2:-66861236 | Msa0418970:CDS |
| ATCGATTTCACGACCATCAG+GGG | 0.621216 | 3_2:+66862475 | None:intergenic |
| AATGGTTGTTGAATCAAGAA+CGG | 0.622905 | 3_2:-66859065 | Msa0418970:three_prime_UTR |
| GGTATTCCACCAGTACTCCC+AGG | 0.624299 | 3_2:+66859230 | None:intergenic |
| AAACATAGGATTGAACAAGA+TGG | 0.626399 | 3_2:-66859323 | Msa0418970:CDS |
| GTGAGAAAGAAGAATCCTTG+TGG | 0.628042 | 3_2:-66859964 | Msa0418970:CDS |
| TCTTCTGAAATATATTCAGA+TGG | 0.628420 | 3_2:+66861169 | None:intergenic |
| ATGGAGGCGAAGATCTAGAG+TGG | 0.631690 | 3_2:-66859724 | Msa0418970:CDS |
| ATAAGCCTATTACAATGATG+TGG | 0.632932 | 3_2:+66859257 | None:intergenic |
| GGTTGGGCAATATTCTGTAG+AGG | 0.638960 | 3_2:-66859413 | Msa0418970:CDS |
| AAAGTTGTTTGTGCTGAATG+TGG | 0.644249 | 3_2:-66859203 | Msa0418970:CDS |
| AAAATCATATGTCTATATGG+AGG | 0.645145 | 3_2:-66859740 | Msa0418970:CDS |
| GGGTGAGACACACTATGAGA+TGG | 0.645383 | 3_2:-66860245 | Msa0418970:CDS |
| CTTCACATGATATGGATTTG+GGG | 0.646725 | 3_2:-66860010 | Msa0418970:CDS |
| ATCTTCAATCAACAATGCCG+TGG | 0.650780 | 3_2:-66860162 | Msa0418970:CDS |
| GAAGCAGCTGATAACTGGCG+AGG | 0.655882 | 3_2:+66862584 | None:intergenic |
| TCATGCAGTCAACACATCGA+TGG | 0.655983 | 3_2:+66858972 | None:intergenic |
| GGGTCACGAACACTGTGCCA+CGG | 0.656210 | 3_2:+66860145 | None:intergenic |
| TTAGTCTTGAAGTACTAAGG+AGG | 0.660034 | 3_2:-66860357 | Msa0418970:CDS |
| TACGTGCAATGTGACGGGCA+GGG | 0.662035 | 3_2:-66858948 | Msa0418970:three_prime_UTR |
| TTGTTGAGGGCATCAAACTG+TGG | 0.677145 | 3_2:+66861247 | None:intergenic |
| GCACTTGCAACAGACATAGG+AGG | 0.680826 | 3_2:+66861142 | None:intergenic |
| TTGTACTCAAAACTACAACA+TGG | 0.705926 | 3_2:-66859506 | Msa0418970:CDS |
| CTTCATGTATCGTTGCTGTG+TGG | 0.715203 | 3_2:-66859162 | Msa0418970:CDS |
| AGATGCACATGCATCAACAA+TGG | 0.729582 | 3_2:-66861455 | Msa0418970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTGAAATGATAATTA+AGG | - | chr3_2:66860389-66860408 | Msa0418970:intron | 10.0% |
| !! | GTTAATTATGTTATATTTAT+AGG | - | chr3_2:66862495-66862514 | Msa0418970:CDS | 10.0% |
| !! | TAGTACTATTAATATGATTA+TGG | - | chr3_2:66859246-66859265 | Msa0418970:CDS | 15.0% |
| !! | ATCAATTGGAAAAATTATAT+TGG | - | chr3_2:66859846-66859865 | Msa0418970:intron | 15.0% |
| !!! | ACATAATTTGAAACTTAATT+TGG | - | chr3_2:66860577-66860596 | Msa0418970:CDS | 15.0% |
| !! | GTTATTTGTTTATTTATGTA+AGG | - | chr3_2:66862556-66862575 | Msa0418970:CDS | 15.0% |
| !! | ATAAACTGGTTAAAAACAAA+TGG | + | chr3_2:66859212-66859231 | None:intergenic | 20.0% |
| !! | CAAAAACTATCTAAATAAAC+TGG | + | chr3_2:66859226-66859245 | None:intergenic | 20.0% |
| !! | AATATTTATTACTGTTGTCT+AGG | - | chr3_2:66859443-66859462 | Msa0418970:CDS | 20.0% |
| !! | AGTAATTAAATAACTCACAA+AGG | - | chr3_2:66859491-66859510 | Msa0418970:CDS | 20.0% |
| !!! | TATGACACATTTTAGTAATA+TGG | + | chr3_2:66859779-66859798 | None:intergenic | 20.0% |
| !!! | CAATTGATCATTTTCATTTT+AGG | + | chr3_2:66859834-66859853 | None:intergenic | 20.0% |
| !! | CTAAAATGAAAATGATCAAT+TGG | - | chr3_2:66859832-66859851 | Msa0418970:intron | 20.0% |
| !!! | AAGATTTTAATTAAACCATG+CGG | + | chr3_2:66860953-66860972 | None:intergenic | 20.0% |
| !!! | ATTTTGATAAATGGAAACAT+AGG | - | chr3_2:66862016-66862035 | Msa0418970:CDS | 20.0% |
| !! | TTAATATAATCATTCAATGC+TGG | + | chr3_2:66862063-66862082 | None:intergenic | 20.0% |
| !!! | AGCATTGAATGATTATATTA+AGG | - | chr3_2:66862062-66862081 | Msa0418970:CDS | 20.0% |
| !! | ATTTGTTTATTTATGTAAGG+TGG | - | chr3_2:66862559-66862578 | Msa0418970:CDS | 20.0% |
| !! | TTTGTTTATTTATGTAAGGT+GGG | - | chr3_2:66862560-66862579 | Msa0418970:CDS | 20.0% |
| !! | AAATGTTTATGTTTATTAGC+TGG | - | chr3_2:66862586-66862605 | Msa0418970:CDS | 20.0% |
| !!! | ACAACAGGGAAAATATTTTT+TGG | + | chr3_2:66858710-66858729 | None:intergenic | 25.0% |
| ! | TCAAGATTTCATCAACAATT+TGG | + | chr3_2:66858918-66858937 | None:intergenic | 25.0% |
| !! | AGTTTGACCAATGATTATTT+TGG | - | chr3_2:66859117-66859136 | Msa0418970:three_prime_UTR | 25.0% |
| !!! | ATGGTTTTTTATGTTCCATT+TGG | - | chr3_2:66859265-66859284 | Msa0418970:CDS | 25.0% |
| ! | ATGAACTTTCATGAAAGTTA+AGG | + | chr3_2:66859415-66859434 | None:intergenic | 25.0% |
| ! | ATCAAAAGTTAAGTTAAGAG+AGG | + | chr3_2:66859557-66859576 | None:intergenic | 25.0% |
| !!! | TGTCATTTTTGTCGAAATTT+CGG | - | chr3_2:66859799-66859818 | Msa0418970:intron | 25.0% |
| !!! | TCTTCTGAAATATATTCAGA+TGG | + | chr3_2:66860187-66860206 | None:intergenic | 25.0% |
| ! | AACACAATATCTCATAAAAG+TGG | + | chr3_2:66860631-66860650 | None:intergenic | 25.0% |
| !! | TTTAGCAATACGAAACTTTT+TGG | - | chr3_2:66860649-66860668 | Msa0418970:intron | 25.0% |
| ! | TAGATGGAACTACAAAATTA+AGG | - | chr3_2:66860858-66860877 | Msa0418970:CDS | 25.0% |
| ! | AGATGGAACTACAAAATTAA+GGG | - | chr3_2:66860859-66860878 | Msa0418970:CDS | 25.0% |
| ! | ATAAAGTCTCACAAACAAAA+GGG | + | chr3_2:66860918-66860937 | None:intergenic | 25.0% |
| ! | AATAAAGTCTCACAAACAAA+AGG | + | chr3_2:66860919-66860938 | None:intergenic | 25.0% |
| ! | TTGATATACTTAATCACTGA+TGG | + | chr3_2:66861247-66861266 | None:intergenic | 25.0% |
| ! | TTAAGTATATCAAAGAAGTG+TGG | - | chr3_2:66861254-66861273 | Msa0418970:CDS | 25.0% |
| ! | GGAAAAATCATATGTCTATA+TGG | - | chr3_2:66861610-66861629 | Msa0418970:intron | 25.0% |
| ! | AAAATCATATGTCTATATGG+AGG | - | chr3_2:66861613-66861632 | Msa0418970:intron | 25.0% |
| !!! | GTTTGAGAGATTTTGATAAA+TGG | - | chr3_2:66862007-66862026 | Msa0418970:CDS | 25.0% |
| ! | TTGTTTATTTATGTAAGGTG+GGG | - | chr3_2:66862561-66862580 | Msa0418970:CDS | 25.0% |
| ! | TTTTTGCCTTTTCAGTAACA+TGG | - | chr3_2:66858735-66858754 | Msa0418970:three_prime_UTR | 30.0% |
| TCATCAACAATTTGGATAAG+TGG | + | chr3_2:66858910-66858929 | None:intergenic | 30.0% | |
| ACTCTGACCAAAATAATCAT+TGG | + | chr3_2:66859127-66859146 | None:intergenic | 30.0% | |
| TAGTTAACGAGATTCAGTTA+AGG | + | chr3_2:66859179-66859198 | None:intergenic | 30.0% | |
| !!! | TTTTTTATGTTCCATTTGGC+AGG | - | chr3_2:66859269-66859288 | Msa0418970:CDS | 30.0% |
| TAAACATGAGACAGATACAT+TGG | - | chr3_2:66859293-66859312 | Msa0418970:CDS | 30.0% | |
| CATTAACAAAATTTCCTGTG+AGG | - | chr3_2:66859368-66859387 | Msa0418970:CDS | 30.0% | |
| TCATATAAAAACAACCTCAC+AGG | + | chr3_2:66859385-66859404 | None:intergenic | 30.0% | |
| AGGTATGTTAATGTCGAAAA+AGG | - | chr3_2:66859511-66859530 | Msa0418970:CDS | 30.0% | |
| TATCCTTATCTTTGATTCCA+AGG | - | chr3_2:66859581-66859600 | Msa0418970:CDS | 30.0% | |
| ! | ATGTAATTTAAAGCTGTCCT+TGG | + | chr3_2:66859601-66859620 | None:intergenic | 30.0% |
| !!! | CTGTTATTTTTGGAGAGTTT+TGG | - | chr3_2:66859987-66860006 | Msa0418970:CDS | 30.0% |
| ATATTCCTATTGCTACCTAT+TGG | - | chr3_2:66860236-66860255 | Msa0418970:CDS | 30.0% | |
| TATTCCTATTGCTACCTATT+GGG | - | chr3_2:66860237-66860256 | Msa0418970:CDS | 30.0% | |
| !! | ATACGAAACTTTTTGGTGTA+CGG | - | chr3_2:66860656-66860675 | Msa0418970:intron | 30.0% |
| TTGTAGTTCCATCTATAAGT+GGG | + | chr3_2:66860853-66860872 | None:intergenic | 30.0% | |
| TTTGTAGTTCCATCTATAAG+TGG | + | chr3_2:66860854-66860873 | None:intergenic | 30.0% | |
| TATTATTCTATTCTACCGCA+TGG | - | chr3_2:66860935-66860954 | Msa0418970:intron | 30.0% | |
| TATACAAAGATGCTAGATCA+AGG | - | chr3_2:66861086-66861105 | Msa0418970:CDS | 30.0% | |
| ATACAAAGATGCTAGATCAA+GGG | - | chr3_2:66861087-66861106 | Msa0418970:CDS | 30.0% | |
| CTGATGGTTCAATAATGAAA+GGG | + | chr3_2:66861231-66861250 | None:intergenic | 30.0% | |
| ACTGATGGTTCAATAATGAA+AGG | + | chr3_2:66861232-66861251 | None:intergenic | 30.0% | |
| !!! | TATCATGTGAAGAGCATTTT+GGG | + | chr3_2:66861335-66861354 | None:intergenic | 30.0% |
| !!! | ATATCATGTGAAGAGCATTT+TGG | + | chr3_2:66861336-66861355 | None:intergenic | 30.0% |
| AAAATGCTCTTCACATGATA+TGG | - | chr3_2:66861335-66861354 | Msa0418970:CDS | 30.0% | |
| TCTTCACATGATATGGATTT+GGG | - | chr3_2:66861342-66861361 | Msa0418970:CDS | 30.0% | |
| TGTGACACTTAATATGACAT+AGG | + | chr3_2:66861498-66861517 | None:intergenic | 30.0% | |
| !! | ACTGAATTTCTTGTTGTTGA+AGG | + | chr3_2:66861770-66861789 | None:intergenic | 30.0% |
| !!! | TGACATCAATTTGGTTCTTT+TGG | - | chr3_2:66861806-66861825 | Msa0418970:intron | 30.0% |
| !!! | GACATCAATTTGGTTCTTTT+GGG | - | chr3_2:66861807-66861826 | Msa0418970:intron | 30.0% |
| TTGTACTCAAAACTACAACA+TGG | - | chr3_2:66861847-66861866 | Msa0418970:intron | 30.0% | |
| AAACATAGGATTGAACAAGA+TGG | - | chr3_2:66862030-66862049 | Msa0418970:CDS | 30.0% | |
| ATAAGCCTATTACAATGATG+TGG | + | chr3_2:66862099-66862118 | None:intergenic | 30.0% | |
| AATGGTTGTTGAATCAAGAA+CGG | - | chr3_2:66862288-66862307 | Msa0418970:intron | 30.0% | |
| GATGGTCATTGGATTATAAT+CGG | + | chr3_2:66862366-66862385 | None:intergenic | 30.0% | |
| GTCTCATGTATGAATAATGT+TGG | - | chr3_2:66862465-66862484 | Msa0418970:CDS | 30.0% | |
| ATTAGCAAGCTGAAAACAAA+TGG | + | chr3_2:66862635-66862654 | None:intergenic | 30.0% | |
| AGGCAAAAACAAACACAACA+GGG | + | chr3_2:66858724-66858743 | None:intergenic | 35.0% | |
| AAGGCAAAAACAAACACAAC+AGG | + | chr3_2:66858725-66858744 | None:intergenic | 35.0% | |
| TAACAGAATGCAGCTAAAGA+AGG | - | chr3_2:66858792-66858811 | Msa0418970:three_prime_UTR | 35.0% | |
| ! | TTTTGGTCAGAGTTCAAACT+CGG | - | chr3_2:66859134-66859153 | Msa0418970:three_prime_UTR | 35.0% |
| CAGTTAAGGTCATATCAATC+AGG | + | chr3_2:66859165-66859184 | None:intergenic | 35.0% | |
| TGTTAATGTCGAAAAAGGAG+TGG | - | chr3_2:66859516-66859535 | Msa0418970:CDS | 35.0% | |
| TGTCCTTGGAATCAAAGATA+AGG | + | chr3_2:66859587-66859606 | None:intergenic | 35.0% | |
| !! | AGCTTTAAGAAAGAATGCAG+TGG | - | chr3_2:66859734-66859753 | Msa0418970:CDS | 35.0% |
| ATTACCTATCTAGCTATCCA+TGG | - | chr3_2:66859930-66859949 | Msa0418970:CDS | 35.0% | |
| AATAACAGCAAATGCTGCTA+AGG | + | chr3_2:66859975-66859994 | None:intergenic | 35.0% | |
| !!! | GCAGCATTTGCTGTTATTTT+TGG | - | chr3_2:66859977-66859996 | Msa0418970:CDS | 35.0% |
| CAATGTCAGGTAGTTGTTTA+AGG | + | chr3_2:66860063-66860082 | None:intergenic | 35.0% | |
| CTTGAATTCAACAATGCACA+TGG | + | chr3_2:66860158-66860177 | None:intergenic | 35.0% | |
| CATGTGCATTGTTGAATTCA+AGG | - | chr3_2:66860156-66860175 | Msa0418970:CDS | 35.0% | |
| AATACTTCTGATGACCCAAT+AGG | + | chr3_2:66860254-66860273 | None:intergenic | 35.0% | |
| TCACAAATTGCAAGTCTCAT+AGG | - | chr3_2:66860286-66860305 | Msa0418970:CDS | 35.0% | |
| CACAAATTGCAAGTCTCATA+GGG | - | chr3_2:66860287-66860306 | Msa0418970:CDS | 35.0% | |
| AAATAGCCCTGCAAAAAGAA+CGG | + | chr3_2:66860437-66860456 | None:intergenic | 35.0% | |
| !! | TACGAAACTTTTTGGTGTAC+GGG | - | chr3_2:66860657-66860676 | Msa0418970:intron | 35.0% |
| ! | AGATGAGAAGAAGCATATTG+AGG | - | chr3_2:66860736-66860755 | Msa0418970:intron | 35.0% |
| ! | TATTGAGGCATTTCTCTATC+TGG | - | chr3_2:66860751-66860770 | Msa0418970:intron | 35.0% |
| ATCGTCCTTTGCATAAATCA+AGG | + | chr3_2:66860825-66860844 | None:intergenic | 35.0% | |
| TGTAGTTCCATCTATAAGTG+GGG | + | chr3_2:66860852-66860871 | None:intergenic | 35.0% | |
| GACTTATACACATGACAAAC+AGG | - | chr3_2:66860973-66860992 | Msa0418970:intron | 35.0% | |
| !! | AGGTTAGTCTTGAAGTACTA+AGG | - | chr3_2:66860993-66861012 | Msa0418970:intron | 35.0% |
| !! | TTAGTCTTGAAGTACTAAGG+AGG | - | chr3_2:66860996-66861015 | Msa0418970:intron | 35.0% |
| TACAAAGATGCTAGATCAAG+GGG | - | chr3_2:66861088-66861107 | Msa0418970:CDS | 35.0% | |
| CTCTTCACATGATATGGATT+TGG | - | chr3_2:66861341-66861360 | Msa0418970:CDS | 35.0% | |
| CTTCACATGATATGGATTTG+GGG | - | chr3_2:66861343-66861362 | Msa0418970:CDS | 35.0% | |
| GATATGGATTTGGGGAAATT+TGG | - | chr3_2:66861351-66861370 | Msa0418970:CDS | 35.0% | |
| TCTTCTTTCTCACTTGTGAA+TGG | + | chr3_2:66861382-66861401 | None:intergenic | 35.0% | |
| TTCCAAACGTGACATCAATT+TGG | - | chr3_2:66861797-66861816 | Msa0418970:intron | 35.0% | |
| AACCAAATTGATGTCACGTT+TGG | + | chr3_2:66861802-66861821 | None:intergenic | 35.0% | |
| ACTCAAAACTACAACATGGT+AGG | - | chr3_2:66861851-66861870 | Msa0418970:intron | 35.0% | |
| ATAGGATTGAACAAGATGGT+TGG | - | chr3_2:66862034-66862053 | Msa0418970:CDS | 35.0% | |
| TAGGATTGAACAAGATGGTT+GGG | - | chr3_2:66862035-66862054 | Msa0418970:CDS | 35.0% | |
| AGCAACCACATCATTGTAAT+AGG | - | chr3_2:66862091-66862110 | Msa0418970:intron | 35.0% | |
| TGTAATAGGCTTATTCTTCC+TGG | - | chr3_2:66862105-66862124 | Msa0418970:intron | 35.0% | |
| GTAATAGGCTTATTCTTCCT+GGG | - | chr3_2:66862106-66862125 | Msa0418970:intron | 35.0% | |
| AAAGTTGTTTGTGCTGAATG+TGG | - | chr3_2:66862150-66862169 | Msa0418970:intron | 35.0% | |
| ATTGTGTGAATACGTGCAAT+CGG | + | chr3_2:66862259-66862278 | None:intergenic | 35.0% | |
| TATTAGCTGGCAAGCTATTA+AGG | - | chr3_2:66862599-66862618 | Msa0418970:CDS | 35.0% | |
| CACTAGCCATGTTACTGAAA+AGG | + | chr3_2:66858744-66858763 | None:intergenic | 40.0% | |
| TGTTAGAAGCAGCTGATAAC+TGG | + | chr3_2:66858777-66858796 | None:intergenic | 40.0% | |
| ! | GGACTGAACTTGTTTCATCA+TGG | + | chr3_2:66858851-66858870 | None:intergenic | 40.0% |
| !! | AATCATTGCTCGAAGTGTTG+AGG | - | chr3_2:66858942-66858961 | Msa0418970:three_prime_UTR | 40.0% |
| !! | ATCATTGCTCGAAGTGTTGA+GGG | - | chr3_2:66858943-66858962 | Msa0418970:three_prime_UTR | 40.0% |
| !! | CATTTGGTCTTAATCCTCCT+AGG | - | chr3_2:66859072-66859091 | Msa0418970:three_prime_UTR | 40.0% |
| GTCAAACTTTACTTAGCCCT+CGG | + | chr3_2:66859105-66859124 | None:intergenic | 40.0% | |
| CTCATGTTTAACCTGCCAAA+TGG | + | chr3_2:66859283-66859302 | None:intergenic | 40.0% | |
| ! | ATTGGAAACTACTGCTGCTT+TGG | - | chr3_2:66859311-66859330 | Msa0418970:CDS | 40.0% |
| AGATGCACATGCATCAACAA+TGG | - | chr3_2:66859898-66859917 | Msa0418970:intron | 40.0% | |
| ! | AACACAACTTTTGCATGCCA+TGG | + | chr3_2:66859950-66859969 | None:intergenic | 40.0% |
| AAACACACTTGCCAAATCTG+TGG | - | chr3_2:66860033-66860052 | Msa0418970:CDS | 40.0% | |
| TTTAAGGAGAGCCACAGATT+TGG | + | chr3_2:66860047-66860066 | None:intergenic | 40.0% | |
| ACAGAATTCTCTGCAATGTC+AGG | + | chr3_2:66860076-66860095 | None:intergenic | 40.0% | |
| ATGACCCAATAGGTAGCAAT+AGG | + | chr3_2:66860244-66860263 | None:intergenic | 40.0% | |
| !! | TTGGGTCATCAGAAGTATTG+TGG | - | chr3_2:66860255-66860274 | Msa0418970:CDS | 40.0% |
| AAGATGTACCAGGTTAGAGA+CGG | + | chr3_2:66860690-66860709 | None:intergenic | 40.0% | |
| GCGATTGTTAAAGATGTACC+AGG | + | chr3_2:66860700-66860719 | None:intergenic | 40.0% | |
| TTCTCATCTGTACCAGAGTA+AGG | + | chr3_2:66860725-66860744 | None:intergenic | 40.0% | |
| !! | TCTGGTACATCTTTTCGAGA+CGG | - | chr3_2:66860769-66860788 | Msa0418970:intron | 40.0% |
| GAGAGCCTTGATTTATGCAA+AGG | - | chr3_2:66860817-66860836 | Msa0418970:CDS | 40.0% | |
| GATATTCCCCCACTTATAGA+TGG | - | chr3_2:66860842-66860861 | Msa0418970:CDS | 40.0% | |
| GTAGTTCCATCTATAAGTGG+GGG | + | chr3_2:66860851-66860870 | None:intergenic | 40.0% | |
| AGACACACTATGAGATGGTA+TGG | - | chr3_2:66861113-66861132 | Msa0418970:CDS | 40.0% | |
| ATCTTCAATCAACAATGCCG+TGG | - | chr3_2:66861191-66861210 | Msa0418970:CDS | 40.0% | |
| TGGATCAAGAGCTACTAGAA+TGG | + | chr3_2:66861296-66861315 | None:intergenic | 40.0% | |
| GTGAGAAAGAAGAATCCTTG+TGG | - | chr3_2:66861389-66861408 | Msa0418970:CDS | 40.0% | |
| ! | TCCTTGTTGTAGATGACAGA+AGG | - | chr3_2:66861589-66861608 | Msa0418970:intron | 40.0% |
| TCCTTCTGTCATCTACAACA+AGG | + | chr3_2:66861593-66861612 | None:intergenic | 40.0% | |
| ! | TAGCAACTTCGAGTTAGAGA+TGG | - | chr3_2:66861693-66861712 | Msa0418970:intron | 40.0% |
| GAGTTAGAGATGGTCTATGT+AGG | - | chr3_2:66861703-66861722 | Msa0418970:intron | 40.0% | |
| TACAGAATATTGCCCAACCT+CGG | + | chr3_2:66861939-66861958 | None:intergenic | 40.0% | |
| TCAGCACAAACAACTTTCTG+AGG | + | chr3_2:66862147-66862166 | None:intergenic | 40.0% | |
| CATGAATACGTGCAATGTGA+CGG | - | chr3_2:66862399-66862418 | Msa0418970:intron | 40.0% | |
| ATGAATACGTGCAATGTGAC+GGG | - | chr3_2:66862400-66862419 | Msa0418970:CDS | 40.0% | |
| ! | ATCGATTTCACGACCATCAG+GGG | + | chr3_2:66858881-66858900 | None:intergenic | 45.0% |
| !! | CATCGATTTCACGACCATCA+GGG | + | chr3_2:66858882-66858901 | None:intergenic | 45.0% |
| !! | ACATCGATTTCACGACCATC+AGG | + | chr3_2:66858883-66858902 | None:intergenic | 45.0% |
| ! | GCATGCATGCATGTGTCATT+TGG | - | chr3_2:66859056-66859075 | Msa0418970:three_prime_UTR | 45.0% |
| ATTCGATATGCTTGATGCGC+TGG | - | chr3_2:66859338-66859357 | Msa0418970:CDS | 45.0% | |
| CAGCTATCATGCAAATGCTC+TGG | - | chr3_2:66859869-66859888 | Msa0418970:intron | 45.0% | |
| CTATCATGCAAATGCTCTGG+AGG | - | chr3_2:66859872-66859891 | Msa0418970:intron | 45.0% | |
| CATGCCATGGATAGCTAGAT+AGG | + | chr3_2:66859937-66859956 | None:intergenic | 45.0% | |
| !! | TTGTTGAGGGCATCAAACTG+TGG | + | chr3_2:66860109-66860128 | None:intergenic | 45.0% |
| !! | AGCCTTCACAAGCTTGTTGA+GGG | + | chr3_2:66860122-66860141 | None:intergenic | 45.0% |
| TGAGCACTTGCAACAGACAT+AGG | + | chr3_2:66860217-66860236 | None:intergenic | 45.0% | |
| TTTCATCAGCCTCAGAAGCA+TGG | - | chr3_2:66860454-66860473 | Msa0418970:intron | 45.0% | |
| ! | TTCATCAGCCTCAGAAGCAT+GGG | - | chr3_2:66860455-66860474 | Msa0418970:intron | 45.0% |
| AGTGACTTTGTGAGCAAGAC+TGG | + | chr3_2:66860487-66860506 | None:intergenic | 45.0% | |
| ! | CTTGGTAGCAAAGAGCAAGT+TGG | + | chr3_2:66860533-66860552 | None:intergenic | 45.0% |
| GCTCTTTGCTACCAAGCTAT+AGG | - | chr3_2:66860537-66860556 | Msa0418970:CDS | 45.0% | |
| CAACGAACTCACCTATAGCT+TGG | + | chr3_2:66860551-66860570 | None:intergenic | 45.0% | |
| TAACAATCGCGTCCTTACTC+TGG | - | chr3_2:66860710-66860729 | Msa0418970:intron | 45.0% | |
| GATGGTATGGATTCCAGTTG+TGG | - | chr3_2:66861126-66861145 | Msa0418970:CDS | 45.0% | |
| !! | CATGTTGCTTTGTCCACAAC+TGG | + | chr3_2:66861142-66861161 | None:intergenic | 45.0% |
| CAGTTGTGGACAAAGCAACA+TGG | - | chr3_2:66861140-66861159 | Msa0418970:CDS | 45.0% | |
| CTAGTAGCTCTTGATCCACA+AGG | - | chr3_2:66861298-66861317 | Msa0418970:CDS | 45.0% | |
| !!! | CATGTGAAGAGCATTTTGGG+AGG | + | chr3_2:66861332-66861351 | None:intergenic | 45.0% |
| CCAAATCTCTTGCTTCCACA+AGG | + | chr3_2:66861407-66861426 | None:intergenic | 45.0% | |
| CCTTGTGGAAGCAAGAGATT+TGG | - | chr3_2:66861404-66861423 | Msa0418970:CDS | 45.0% | |
| ! | AGCCTTGAGTTGCTTGTTGA+TGG | - | chr3_2:66861427-66861446 | Msa0418970:CDS | 45.0% |
| TGCCATCAACAAGCAACTCA+AGG | + | chr3_2:66861432-66861451 | None:intergenic | 45.0% | |
| !!! | TGGCATTGATCCTGCACTTT+TGG | - | chr3_2:66861447-66861466 | Msa0418970:CDS | 45.0% |
| ! | TTGATCCTGCACTTTTGGAC+TGG | - | chr3_2:66861452-66861471 | Msa0418970:CDS | 45.0% |
| ! | TGATCCTGCACTTTTGGACT+GGG | - | chr3_2:66861453-66861472 | Msa0418970:CDS | 45.0% |
| ATGACTGTGCTTAGCTTCGA+CGG | - | chr3_2:66861907-66861926 | Msa0418970:intron | 45.0% | |
| GGTTGGGCAATATTCTGTAG+AGG | - | chr3_2:66861940-66861959 | Msa0418970:intron | 45.0% | |
| CTGTAGAGGACCATCTGAAA+TGG | - | chr3_2:66861954-66861973 | Msa0418970:intron | 45.0% | |
| ! | AGGACCATCTGAAATGGCTA+GGG | - | chr3_2:66861960-66861979 | Msa0418970:intron | 45.0% |
| TTAGCCCTAGCCATTTCAGA+TGG | + | chr3_2:66861967-66861986 | None:intergenic | 45.0% | |
| ! | TCTGAAATGGCTAGGGCTAA+AGG | - | chr3_2:66861967-66861986 | Msa0418970:intron | 45.0% |
| ! | CTTATTCTTCCTGGGAGTAC+TGG | - | chr3_2:66862114-66862133 | Msa0418970:intron | 45.0% |
| TGCTGAATGTGGTCGTCAAA+TGG | - | chr3_2:66862161-66862180 | Msa0418970:intron | 45.0% | |
| CTTCATGTATCGTTGCTGTG+TGG | - | chr3_2:66862191-66862210 | Msa0418970:intron | 45.0% | |
| TCACACAATCAGCGCATCAA+TGG | - | chr3_2:66862270-66862289 | Msa0418970:intron | 45.0% | |
| GTCAACACATCGATGGTCAT+TGG | + | chr3_2:66862377-66862396 | None:intergenic | 45.0% | |
| TCATGCAGTCAACACATCGA+TGG | + | chr3_2:66862384-66862403 | None:intergenic | 45.0% | |
| !! | TTAATTATGTTATATTTATA+GGG | - | chr3_2:66862496-66862515 | Msa0418970:CDS | 5.0% |
| !! | TCATGCAAATGCTCTGGAGG+TGG | - | chr3_2:66859875-66859894 | Msa0418970:intron | 50.0% |
| TGCCCTCAACAAGCTTGTGA+AGG | - | chr3_2:66860117-66860136 | Msa0418970:CDS | 50.0% | |
| !! | CAGCCTTCACAAGCTTGTTG+AGG | + | chr3_2:66860123-66860142 | None:intergenic | 50.0% |
| GCACTTGCAACAGACATAGG+AGG | + | chr3_2:66860214-66860233 | None:intergenic | 50.0% | |
| ! | GTAACGACTGTCGACTACGA+TGG | - | chr3_2:66860411-66860430 | Msa0418970:intron | 50.0% |
| ! | ACGATGGCCGTTCTTTTTGC+AGG | - | chr3_2:66860427-66860446 | Msa0418970:intron | 50.0% |
| ! | CGATGGCCGTTCTTTTTGCA+GGG | - | chr3_2:66860428-66860447 | Msa0418970:intron | 50.0% |
| GGATAACTCCCATGCTTCTG+AGG | + | chr3_2:66860466-66860485 | None:intergenic | 50.0% | |
| GAAGATAGCCGTCTCTAACC+TGG | - | chr3_2:66860679-66860698 | Msa0418970:intron | 50.0% | |
| GGGTGAGACACACTATGAGA+TGG | - | chr3_2:66861108-66861127 | Msa0418970:CDS | 50.0% | |
| TGGGAGGACAATCTTCCTTG+TGG | + | chr3_2:66861316-66861335 | None:intergenic | 50.0% | |
| ! | CATACCCAGTCCAAAAGTGC+AGG | + | chr3_2:66861460-66861479 | None:intergenic | 50.0% |
| ATGGAGGCGAAGATCTAGAG+TGG | - | chr3_2:66861629-66861648 | Msa0418970:intron | 50.0% | |
| ! | GAGGACCATCTGAAATGGCT+AGG | - | chr3_2:66861959-66861978 | Msa0418970:intron | 50.0% |
| !! | ATTCTTCCTGGGAGTACTGG+TGG | - | chr3_2:66862117-66862136 | Msa0418970:intron | 50.0% |
| GCAGGGAATCACAATTCGAC+AGG | + | chr3_2:66862231-66862250 | None:intergenic | 50.0% | |
| GAAGCAGCTGATAACTGGCG+AGG | + | chr3_2:66858772-66858791 | None:intergenic | 55.0% | |
| GGTATTCCACCAGTACTCCC+AGG | + | chr3_2:66862126-66862145 | None:intergenic | 55.0% | |
| ACGTGCAATCGGTGACTGCA+GGG | + | chr3_2:66862248-66862267 | None:intergenic | 55.0% | |
| TACGTGCAATCGGTGACTGC+AGG | + | chr3_2:66862249-66862268 | None:intergenic | 55.0% | |
| !! | ATACGTGCAATGTGACGGGC+AGG | - | chr3_2:66862404-66862423 | Msa0418970:CDS | 55.0% |
| !! | TACGTGCAATGTGACGGGCA+GGG | - | chr3_2:66862405-66862424 | Msa0418970:CDS | 55.0% |
| CAGTCCACTCATGCCCCTGA+TGG | - | chr3_2:66858865-66858884 | Msa0418970:three_prime_UTR | 60.0% | |
| ! | ACGACCATCAGGGGCATGAG+TGG | + | chr3_2:66858872-66858891 | None:intergenic | 60.0% |
| TCCTCCTAGGAGTTCAGCCG+AGG | - | chr3_2:66859085-66859104 | Msa0418970:three_prime_UTR | 60.0% | |
| CCTCCTAGGAGTTCAGCCGA+GGG | - | chr3_2:66859086-66859105 | Msa0418970:three_prime_UTR | 60.0% | |
| TAGCCCTCGGCTGAACTCCT+AGG | + | chr3_2:66859092-66859111 | None:intergenic | 60.0% | |
| GGGTCACGAACACTGTGCCA+CGG | + | chr3_2:66861211-66861230 | None:intergenic | 60.0% | |
| AGCTTCGACGGTAGTGACCG+AGG | - | chr3_2:66861919-66861938 | Msa0418970:intron | 60.0% | |
| TCGACGGTAGTGACCGAGGT+TGG | - | chr3_2:66861923-66861942 | Msa0418970:intron | 60.0% | |
| CGACGGTAGTGACCGAGGTT+GGG | - | chr3_2:66861924-66861943 | Msa0418970:intron | 60.0% | |
| CCCTCGGCTGAACTCCTAGG+AGG | + | chr3_2:66859089-66859108 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 66858705 | 66862670 | 66858705 | ID=Msa0418970;Name=Msa0418970 |
| chr3_2 | mRNA | 66858705 | 66862670 | 66858705 | ID=Msa0418970-mRNA-1;Parent=Msa0418970;Name=Msa0418970-mRNA-1;_AED=0.09;_eAED=0.09;_QI=49|1|1|1|0.85|0.75|8|426|706 |
| chr3_2 | exon | 66858705 | 66859007 | 66858705 | ID=Msa0418970-mRNA-1:exon:15460;Parent=Msa0418970-mRNA-1 |
| chr3_2 | exon | 66859034 | 66859774 | 66859034 | ID=Msa0418970-mRNA-1:exon:15459;Parent=Msa0418970-mRNA-1 |
| chr3_2 | exon | 66859901 | 66860380 | 66859901 | ID=Msa0418970-mRNA-1:exon:15458;Parent=Msa0418970-mRNA-1 |
| chr3_2 | exon | 66860495 | 66860637 | 66860495 | ID=Msa0418970-mRNA-1:exon:15457;Parent=Msa0418970-mRNA-1 |
| chr3_2 | exon | 66860817 | 66860926 | 66860817 | ID=Msa0418970-mRNA-1:exon:15456;Parent=Msa0418970-mRNA-1 |
| chr3_2 | exon | 66861055 | 66861503 | 66861055 | ID=Msa0418970-mRNA-1:exon:15455;Parent=Msa0418970-mRNA-1 |
| chr3_2 | exon | 66861986 | 66862084 | 66861986 | ID=Msa0418970-mRNA-1:exon:15454;Parent=Msa0418970-mRNA-1 |
| chr3_2 | exon | 66862400 | 66862670 | 66862400 | ID=Msa0418970-mRNA-1:exon:15453;Parent=Msa0418970-mRNA-1 |
| chr3_2 | five_prime_UTR | 66862622 | 66862670 | 66862622 | ID=Msa0418970-mRNA-1:five_prime_utr;Parent=Msa0418970-mRNA-1 |
| chr3_2 | CDS | 66862400 | 66862621 | 66862400 | ID=Msa0418970-mRNA-1:cds;Parent=Msa0418970-mRNA-1 |
| chr3_2 | CDS | 66861986 | 66862084 | 66861986 | ID=Msa0418970-mRNA-1:cds;Parent=Msa0418970-mRNA-1 |
| chr3_2 | CDS | 66861055 | 66861503 | 66861055 | ID=Msa0418970-mRNA-1:cds;Parent=Msa0418970-mRNA-1 |
| chr3_2 | CDS | 66860817 | 66860926 | 66860817 | ID=Msa0418970-mRNA-1:cds;Parent=Msa0418970-mRNA-1 |
| chr3_2 | CDS | 66860495 | 66860637 | 66860495 | ID=Msa0418970-mRNA-1:cds;Parent=Msa0418970-mRNA-1 |
| chr3_2 | CDS | 66859901 | 66860380 | 66859901 | ID=Msa0418970-mRNA-1:cds;Parent=Msa0418970-mRNA-1 |
| chr3_2 | CDS | 66859157 | 66859774 | 66859157 | ID=Msa0418970-mRNA-1:cds;Parent=Msa0418970-mRNA-1 |
| chr3_2 | three_prime_UTR | 66859034 | 66859156 | 66859034 | ID=Msa0418970-mRNA-1:three_prime_utr;Parent=Msa0418970-mRNA-1 |
| chr3_2 | three_prime_UTR | 66858705 | 66859007 | 66858705 | ID=Msa0418970-mRNA-1:three_prime_utr;Parent=Msa0418970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
