Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0635020 | XP_039689920.1 | 98.599 | 357 | 5 | 0 | 1 | 357 | 1 | 357 | 0.0 | 723 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0635020 | sp|O24305|M3OM1_PEA | 77.624 | 362 | 74 | 2 | 1 | 357 | 1 | 360 | 0.0 | 581 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0539590 | Msa0635020 | 0.803787 | 2.951332e-49 | -8.615850e-47 |
| Msa0595350 | Msa0635020 | 0.825168 | 5.429105e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0635020 | MtrunA17_Chr4g0014591 | 98.319 | 357 | 6 | 0 | 1 | 357 | 1 | 357 | 0.0 | 721 |
| Msa0635020 | MtrunA17_Chr4g0014661 | 97.759 | 357 | 8 | 0 | 1 | 357 | 1 | 357 | 0.0 | 718 |
| Msa0635020 | MtrunA17_Chr4g0046361 | 77.008 | 361 | 79 | 1 | 1 | 357 | 1 | 361 | 0.0 | 577 |
| Msa0635020 | MtrunA17_Chr4g0014681 | 77.686 | 363 | 75 | 1 | 1 | 357 | 1 | 363 | 0.0 | 568 |
| Msa0635020 | MtrunA17_Chr4g0014561 | 77.135 | 363 | 77 | 1 | 1 | 357 | 1 | 363 | 0.0 | 563 |
| Msa0635020 | MtrunA17_Chr4g0014641 | 76.033 | 363 | 81 | 1 | 1 | 357 | 1 | 363 | 0.0 | 556 |
| Msa0635020 | MtrunA17_Chr4g0046341 | 75.824 | 364 | 81 | 1 | 1 | 357 | 1 | 364 | 0.0 | 552 |
| Msa0635020 | MtrunA17_Chr4g0014601 | 97.692 | 260 | 6 | 0 | 1 | 260 | 1 | 260 | 0.0 | 521 |
| Msa0635020 | MtrunA17_Chr7g0219141 | 48.596 | 356 | 175 | 4 | 6 | 357 | 6 | 357 | 5.53e-121 | 353 |
| Msa0635020 | MtrunA17_Chr1g0188391 | 49.315 | 365 | 173 | 6 | 1 | 357 | 1 | 361 | 2.86e-119 | 349 |
| Msa0635020 | MtrunA17_Chr7g0219161 | 49.128 | 344 | 167 | 4 | 6 | 345 | 6 | 345 | 1.88e-118 | 347 |
| Msa0635020 | MtrunA17_Chr7g0223231 | 47.293 | 351 | 177 | 4 | 6 | 355 | 5 | 348 | 9.05e-117 | 342 |
| Msa0635020 | MtrunA17_Chr5g0432251 | 48.295 | 352 | 174 | 6 | 11 | 357 | 11 | 359 | 5.52e-115 | 338 |
| Msa0635020 | MtrunA17_Chr5g0432301 | 46.685 | 362 | 182 | 7 | 3 | 356 | 1 | 359 | 3.98e-113 | 333 |
| Msa0635020 | MtrunA17_Chr4g0046531 | 50.279 | 358 | 173 | 4 | 1 | 356 | 1 | 355 | 4.73e-112 | 342 |
| Msa0635020 | MtrunA17_Chr4g0046531 | 49.304 | 359 | 177 | 4 | 1 | 357 | 363 | 718 | 8.82e-110 | 336 |
| Msa0635020 | MtrunA17_Chr5g0432241 | 46.240 | 359 | 185 | 5 | 4 | 357 | 5 | 360 | 4.58e-111 | 328 |
| Msa0635020 | MtrunA17_Chr7g0223241 | 46.724 | 351 | 179 | 4 | 6 | 355 | 5 | 348 | 2.12e-110 | 326 |
| Msa0635020 | MtrunA17_Chr5g0432261 | 45.429 | 350 | 159 | 3 | 11 | 357 | 7 | 327 | 5.39e-107 | 316 |
| Msa0635020 | MtrunA17_Chr5g0432211 | 45.272 | 349 | 175 | 6 | 11 | 357 | 11 | 345 | 9.16e-106 | 314 |
| Msa0635020 | MtrunA17_Chr4g0040621 | 45.115 | 348 | 188 | 2 | 11 | 357 | 24 | 369 | 2.64e-104 | 311 |
| Msa0635020 | MtrunA17_Chr1g0188371 | 46.567 | 335 | 170 | 5 | 9 | 337 | 9 | 340 | 2.89e-96 | 291 |
| Msa0635020 | MtrunA17_Chr3g0121301 | 36.471 | 340 | 201 | 10 | 20 | 353 | 27 | 357 | 1.64e-57 | 191 |
| Msa0635020 | MtrunA17_Chr4g0022021 | 33.889 | 360 | 228 | 8 | 3 | 357 | 14 | 368 | 4.35e-57 | 189 |
| Msa0635020 | MtrunA17_Chr4g0021981 | 33.611 | 360 | 229 | 8 | 3 | 357 | 14 | 368 | 4.57e-56 | 187 |
| Msa0635020 | MtrunA17_Chr7g0219171 | 58.209 | 134 | 55 | 1 | 224 | 357 | 116 | 248 | 3.27e-50 | 168 |
| Msa0635020 | MtrunA17_Chr7g0219171 | 45.536 | 112 | 60 | 1 | 6 | 117 | 6 | 116 | 1.85e-27 | 108 |
| Msa0635020 | MtrunA17_Chr4g0014611 | 96.000 | 100 | 4 | 0 | 258 | 357 | 8 | 107 | 3.16e-45 | 150 |
| Msa0635020 | MtrunA17_Chr4g0014671 | 96.190 | 105 | 4 | 0 | 253 | 357 | 30 | 134 | 6.81e-42 | 142 |
| Msa0635020 | MtrunA17_Chr5g0448091 | 31.940 | 335 | 205 | 12 | 29 | 350 | 31 | 355 | 7.86e-41 | 147 |
| Msa0635020 | MtrunA17_Chr7g0276401 | 30.655 | 336 | 215 | 9 | 26 | 352 | 42 | 368 | 2.45e-39 | 143 |
| Msa0635020 | MtrunA17_Chr3g0128011 | 31.921 | 354 | 201 | 12 | 9 | 343 | 71 | 403 | 2.66e-39 | 144 |
| Msa0635020 | MtrunA17_Chr1g0200491 | 29.915 | 351 | 224 | 8 | 5 | 343 | 17 | 357 | 3.88e-39 | 142 |
| Msa0635020 | MtrunA17_Chr8g0367501 | 30.028 | 363 | 234 | 10 | 5 | 355 | 6 | 360 | 7.41e-39 | 143 |
| Msa0635020 | MtrunA17_Chr8g0367441 | 30.462 | 325 | 207 | 8 | 26 | 338 | 41 | 358 | 1.33e-38 | 141 |
| Msa0635020 | MtrunA17_Chr7g0276411 | 30.395 | 329 | 210 | 8 | 26 | 342 | 26 | 347 | 3.71e-38 | 140 |
| Msa0635020 | MtrunA17_Chr2g0314271 | 33.230 | 322 | 196 | 9 | 31 | 342 | 27 | 339 | 6.79e-38 | 139 |
| Msa0635020 | MtrunA17_Chr7g0218131 | 29.674 | 337 | 218 | 9 | 32 | 356 | 40 | 369 | 7.15e-38 | 139 |
| Msa0635020 | MtrunA17_Chr8g0367491 | 29.674 | 337 | 217 | 10 | 26 | 349 | 40 | 369 | 1.24e-37 | 139 |
| Msa0635020 | MtrunA17_Chr1g0163611 | 29.683 | 347 | 224 | 9 | 24 | 356 | 29 | 369 | 2.98e-37 | 137 |
| Msa0635020 | MtrunA17_Chr1g0163601 | 30.631 | 333 | 213 | 8 | 24 | 344 | 29 | 355 | 3.31e-37 | 137 |
| Msa0635020 | MtrunA17_Chr8g0367451 | 30.769 | 325 | 206 | 9 | 26 | 338 | 40 | 357 | 9.88e-37 | 136 |
| Msa0635020 | MtrunA17_Chr7g0218301 | 28.529 | 340 | 218 | 8 | 32 | 355 | 40 | 370 | 4.15e-36 | 134 |
| Msa0635020 | MtrunA17_Chr7g0218261 | 28.529 | 333 | 221 | 8 | 32 | 355 | 39 | 363 | 5.01e-36 | 134 |
| Msa0635020 | MtrunA17_Chr7g0218271 | 28.319 | 339 | 220 | 8 | 32 | 355 | 40 | 370 | 1.52e-35 | 133 |
| Msa0635020 | MtrunA17_Chr7g0218181 | 26.786 | 336 | 226 | 9 | 32 | 356 | 40 | 366 | 5.36e-35 | 131 |
| Msa0635020 | MtrunA17_Chr2g0307521 | 29.499 | 339 | 210 | 10 | 32 | 355 | 34 | 358 | 3.77e-34 | 129 |
| Msa0635020 | MtrunA17_Chr3g0085211 | 30.982 | 326 | 209 | 9 | 28 | 344 | 38 | 356 | 9.42e-34 | 128 |
| Msa0635020 | MtrunA17_Chr1g0163621 | 29.254 | 335 | 213 | 9 | 25 | 344 | 44 | 369 | 1.02e-33 | 128 |
| Msa0635020 | MtrunA17_Chr8g0345851 | 31.395 | 258 | 168 | 5 | 89 | 344 | 27 | 277 | 5.14e-33 | 124 |
| Msa0635020 | MtrunA17_Chr7g0218211 | 28.443 | 334 | 221 | 8 | 32 | 355 | 39 | 364 | 2.56e-32 | 124 |
| Msa0635020 | MtrunA17_Chr8g0367381 | 30.000 | 310 | 181 | 9 | 26 | 324 | 41 | 325 | 2.03e-31 | 120 |
| Msa0635020 | MtrunA17_Chr3g0085201 | 30.539 | 334 | 207 | 13 | 32 | 352 | 29 | 350 | 1.68e-30 | 119 |
| Msa0635020 | MtrunA17_Chr3g0130011 | 28.267 | 329 | 218 | 11 | 23 | 342 | 24 | 343 | 3.88e-29 | 115 |
| Msa0635020 | MtrunA17_Chr4g0014621 | 96.970 | 66 | 2 | 0 | 292 | 357 | 197 | 262 | 5.85e-29 | 112 |
| Msa0635020 | MtrunA17_Chr3g0130061 | 26.829 | 328 | 224 | 10 | 23 | 342 | 24 | 343 | 2.78e-27 | 110 |
| Msa0635020 | MtrunA17_Chr8g0367461 | 37.963 | 108 | 62 | 3 | 244 | 349 | 1 | 105 | 1.67e-17 | 77.4 |
| Msa0635020 | MtrunA17_Chr6g0482291 | 29.560 | 159 | 100 | 3 | 185 | 342 | 14 | 161 | 3.10e-17 | 78.6 |
| Msa0635020 | MtrunA17_Chr4g0011691 | 39.796 | 98 | 51 | 3 | 6 | 101 | 16 | 107 | 1.72e-14 | 72.4 |
| Msa0635020 | MtrunA17_Chr4g0011691 | 39.583 | 96 | 54 | 3 | 259 | 353 | 140 | 232 | 1.78e-11 | 63.5 |
| Msa0635020 | MtrunA17_Chr8g0367401 | 33.945 | 109 | 70 | 1 | 149 | 257 | 4 | 110 | 4.65e-14 | 68.9 |
| Msa0635020 | MtrunA17_Chr4g0014551 | 88.636 | 44 | 5 | 0 | 314 | 357 | 1 | 44 | 8.20e-14 | 65.1 |
| Msa0635020 | MtrunA17_Chr1g0170941 | 43.939 | 66 | 37 | 0 | 190 | 255 | 11 | 76 | 6.76e-11 | 57.8 |
| Msa0635020 | MtrunA17_Chr8g0367391 | 32.203 | 118 | 73 | 4 | 228 | 342 | 6 | 119 | 7.98e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0635020 | AT4G35150.1 | 31.356 | 354 | 185 | 9 | 16 | 356 | 15 | 323 | 2.38e-46 | 160 |
| Msa0635020 | AT4G35160.1 | 33.333 | 360 | 213 | 11 | 16 | 356 | 29 | 380 | 8.79e-45 | 158 |
| Msa0635020 | AT5G54160.1 | 32.113 | 355 | 213 | 10 | 8 | 344 | 4 | 348 | 4.73e-43 | 153 |
| Msa0635020 | AT3G53140.1 | 31.765 | 340 | 206 | 11 | 31 | 354 | 27 | 356 | 1.93e-37 | 138 |
| Msa0635020 | AT1G77520.1 | 30.814 | 344 | 213 | 9 | 31 | 356 | 44 | 380 | 4.97e-37 | 137 |
| Msa0635020 | AT1G33030.1 | 29.697 | 330 | 211 | 10 | 31 | 347 | 21 | 342 | 1.50e-35 | 133 |
| Msa0635020 | AT5G53810.1 | 31.700 | 347 | 211 | 10 | 29 | 356 | 38 | 377 | 1.83e-34 | 130 |
| Msa0635020 | AT1G51990.2 | 30.792 | 341 | 210 | 12 | 33 | 357 | 32 | 362 | 8.19e-33 | 125 |
| Msa0635020 | AT1G51990.1 | 30.792 | 341 | 210 | 12 | 33 | 357 | 32 | 362 | 8.50e-32 | 123 |
| Msa0635020 | AT1G63140.2 | 29.167 | 360 | 225 | 12 | 9 | 347 | 19 | 369 | 7.06e-31 | 121 |
| Msa0635020 | AT1G63140.4 | 29.167 | 360 | 225 | 12 | 9 | 347 | 39 | 389 | 8.29e-31 | 121 |
| Msa0635020 | AT1G77530.1 | 30.814 | 344 | 213 | 9 | 31 | 356 | 44 | 380 | 2.08e-28 | 114 |
| Msa0635020 | AT1G76790.1 | 27.273 | 363 | 224 | 12 | 7 | 349 | 9 | 351 | 1.96e-27 | 111 |
| Msa0635020 | AT1G62900.1 | 33.880 | 183 | 114 | 4 | 167 | 347 | 16 | 193 | 8.27e-24 | 97.8 |
| Msa0635020 | AT1G21130.1 | 26.364 | 330 | 214 | 10 | 31 | 342 | 40 | 358 | 8.82e-21 | 92.8 |
| Msa0635020 | AT1G21110.1 | 25.688 | 327 | 214 | 10 | 31 | 339 | 40 | 355 | 7.49e-20 | 90.1 |
| Msa0635020 | AT5G37170.2 | 28.866 | 194 | 132 | 4 | 166 | 356 | 43 | 233 | 8.02e-20 | 87.8 |
| Msa0635020 | AT1G21100.1 | 26.061 | 330 | 215 | 10 | 31 | 342 | 40 | 358 | 2.13e-19 | 89.0 |
| Msa0635020 | AT5G37170.1 | 28.866 | 194 | 132 | 4 | 166 | 356 | 143 | 333 | 2.22e-19 | 88.2 |
| Msa0635020 | AT1G21120.1 | 25.758 | 330 | 216 | 11 | 31 | 342 | 40 | 358 | 6.40e-19 | 87.4 |
| Msa0635020 | AT5G37170.3 | 31.214 | 173 | 110 | 5 | 188 | 354 | 14 | 183 | 6.93e-19 | 84.0 |
| Msa0635020 | AT1G21120.2 | 25.758 | 330 | 216 | 11 | 31 | 342 | 88 | 406 | 1.29e-18 | 87.0 |
| Msa0635020 | AT1G33030.2 | 26.582 | 237 | 159 | 7 | 31 | 257 | 21 | 252 | 4.36e-14 | 72.0 |
| Msa0635020 | AT1G33030.3 | 26.582 | 237 | 159 | 7 | 31 | 257 | 21 | 252 | 8.35e-14 | 71.2 |
| Msa0635020 | AT1G63140.1 | 27.239 | 268 | 172 | 8 | 9 | 257 | 39 | 302 | 1.03e-13 | 71.2 |
Find 67 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATACATGTTTGTATAAA+TGG | 0.173388 | 4_3:-23143851 | None:intergenic |
| GCTGTTCTTCAATATCTTTA+AGG | 0.222796 | 4_3:-23145156 | None:intergenic |
| TTCAAAGATGAGGCTAATTC+AGG | 0.265492 | 4_3:-23143960 | None:intergenic |
| TATAGGACACTAACTTTAGA+AGG | 0.276793 | 4_3:-23143990 | None:intergenic |
| CAAAGTGGGTTCTGCATGAT+TGG | 0.295304 | 4_3:+23145120 | Msa0635020:intron |
| CAGCCATGTGTTTGAGGGTT+TGG | 0.297695 | 4_3:+23144355 | Msa0635020:CDS |
| GTTTGAGGGTTTGGAATCTT+TGG | 0.299287 | 4_3:+23144364 | Msa0635020:CDS |
| CTCAGAGAACCATTTCTTAG+AGG | 0.305502 | 4_3:-23144186 | None:intergenic |
| AACAGCAAAGAAGCTATTTC+AGG | 0.318216 | 4_3:+23145173 | Msa0635020:CDS |
| CTAAAGTTAGTGTCCTATAT+AGG | 0.347448 | 4_3:+23143994 | Msa0635020:CDS |
| GTTGATGTGGCAGGTGGAAC+TGG | 0.385377 | 4_3:+23144386 | Msa0635020:CDS |
| AAAGAAGCTATTTCAGGAAA+AGG | 0.388596 | 4_3:+23145179 | Msa0635020:CDS |
| CCACTGATGAGAAGCTTTGA+AGG | 0.393766 | 4_3:-23144095 | None:intergenic |
| AATTCTTCATCCATGTTCTC+TGG | 0.398747 | 4_3:+23144151 | Msa0635020:CDS |
| TCATAGGCTTTCCATGTTTG+TGG | 0.399025 | 4_3:-23143932 | None:intergenic |
| AGAGACTTGAAGCCACATAT+TGG | 0.418939 | 4_3:-23145386 | None:intergenic |
| GCACTCTATGAAAGTGCAAT+GGG | 0.425564 | 4_3:+23144221 | Msa0635020:CDS |
| CAGGTTGTGGCTAACTTATC+TGG | 0.432889 | 4_3:+23144473 | Msa0635020:CDS |
| GTAATGATGACTCTGCATAA+TGG | 0.436305 | 4_3:+23145293 | Msa0635020:CDS |
| GATAAACTTAGCTTGTTTCA+AGG | 0.437048 | 4_3:+23144284 | Msa0635020:CDS |
| GCTAATTCAGGAACAGTCAT+AGG | 0.442962 | 4_3:-23143948 | None:intergenic |
| TGTGGCACTCCTCTAAGAAA+TGG | 0.452397 | 4_3:+23144177 | Msa0635020:CDS |
| ACTCAAAATTTGAACTTTGT+TGG | 0.456655 | 4_3:+23144497 | Msa0635020:CDS |
| GACTGCAGCCATGTGTTTGA+GGG | 0.460568 | 4_3:+23144350 | Msa0635020:CDS |
| CAAAATTTGAACTTTGTTGG+TGG | 0.461431 | 4_3:+23144500 | Msa0635020:CDS |
| GCAAGCGCAAGAACCTATAT+AGG | 0.464145 | 4_3:-23144007 | None:intergenic |
| ATAAACTTAGCTTGTTTCAA+GGG | 0.472913 | 4_3:+23144285 | Msa0635020:CDS |
| AATGTTTAAGCTTGCTCTCA+AGG | 0.478021 | 4_3:+23144328 | Msa0635020:CDS |
| GGACTGCAGCCATGTGTTTG+AGG | 0.478258 | 4_3:+23144349 | Msa0635020:CDS |
| AAGAAGCTATTTCAGGAAAA+GGG | 0.484470 | 4_3:+23145180 | Msa0635020:CDS |
| AAAGTGGGTTCTGCATGATT+GGG | 0.491554 | 4_3:+23145121 | Msa0635020:intron |
| GAATCTTTGGTTGATGTGGC+AGG | 0.499173 | 4_3:+23144377 | Msa0635020:CDS |
| ATCCATGTTCTCTGGATATG+TGG | 0.500274 | 4_3:+23144159 | Msa0635020:CDS |
| CTCAAATCAGCTGTGGAACT+AGG | 0.506689 | 4_3:+23143894 | Msa0635020:CDS |
| TACAAGATTACTCCAATATG+TGG | 0.506969 | 4_3:+23145374 | Msa0635020:CDS |
| TTTAGATCAACCACAGGTTG+TGG | 0.518679 | 4_3:+23144460 | Msa0635020:CDS |
| CACAGCTGATTTGAGTGCCA+TGG | 0.520024 | 4_3:-23143886 | None:intergenic |
| TGCACTCTATGAAAGTGCAA+TGG | 0.533425 | 4_3:+23144220 | Msa0635020:CDS |
| GAAATGGTTCTCTGAGGAGA+AGG | 0.549990 | 4_3:+23144193 | Msa0635020:CDS |
| TTTGGAATCTTTGGTTGATG+TGG | 0.555368 | 4_3:+23144373 | Msa0635020:CDS |
| TTGAGTAAAACAGCATCTGC+AGG | 0.557051 | 4_3:-23144545 | None:intergenic |
| CATTTGTGAATCAGCTGCCA+TGG | 0.558343 | 4_3:-23144309 | None:intergenic |
| ATACAGCTTTATAAGTTCCA+TGG | 0.573273 | 4_3:+23143869 | Msa0635020:CDS |
| CAAATGGATTTCAAGAGCAA+TGG | 0.577950 | 4_3:+23143795 | None:intergenic |
| GTTGCAATTGCACTTTGACA+TGG | 0.578956 | 4_3:+23145271 | Msa0635020:CDS |
| CCTTCAAAGCTTCTCATCAG+TGG | 0.586184 | 4_3:+23144095 | Msa0635020:CDS |
| TGCCACATATCCAGAGAACA+TGG | 0.593078 | 4_3:-23144161 | None:intergenic |
| GTCAAAGTGCAATTGCAACT+CGG | 0.597693 | 4_3:-23145267 | None:intergenic |
| TAGCTTGTTTCAAGGGGCCA+TGG | 0.600696 | 4_3:+23144292 | Msa0635020:CDS |
| TAAACTTAGCTTGTTTCAAG+GGG | 0.605007 | 4_3:+23144286 | Msa0635020:CDS |
| AGGGTGAAGTTTCAAAGATG+AGG | 0.607728 | 4_3:-23143970 | None:intergenic |
| TCTTTGGTTGATGTGGCAGG+TGG | 0.622986 | 4_3:+23144380 | Msa0635020:CDS |
| AGTAAAACAGCATCTGCAGG+AGG | 0.624714 | 4_3:-23144542 | None:intergenic |
| GTAGATGCAATCCACAAACA+TGG | 0.627357 | 4_3:+23143921 | Msa0635020:CDS |
| ATAGGACACTAACTTTAGAA+GGG | 0.629455 | 4_3:-23143989 | None:intergenic |
| CATGGCACTCAAATCAGCTG+TGG | 0.632130 | 4_3:+23143887 | Msa0635020:CDS |
| GATAAGTTAGCCACAACCTG+TGG | 0.634807 | 4_3:-23144470 | None:intergenic |
| CACTCTATGAAAGTGCAATG+GGG | 0.635539 | 4_3:+23144222 | Msa0635020:CDS |
| ATTCCAAACCCTCAAACACA+TGG | 0.643702 | 4_3:-23144358 | None:intergenic |
| ACTCTATGAAAGTGCAATGG+GGG | 0.643797 | 4_3:+23144223 | Msa0635020:CDS |
| TTGCGCTTGCTAACACACGA+TGG | 0.651331 | 4_3:+23144020 | Msa0635020:CDS |
| AAAACTGTGCATTTGATGTG+AGG | 0.654544 | 4_3:-23144440 | None:intergenic |
| TGAAGAATTCCCTTAACAAG+TGG | 0.661082 | 4_3:-23144137 | None:intergenic |
| AAGAAACTCATATATGACGC+AGG | 0.661175 | 4_3:+23145341 | Msa0635020:CDS |
| CTCTAAGAAATGGTTCTCTG+AGG | 0.677453 | 4_3:+23144187 | Msa0635020:CDS |
| GTAAAACAGCATCTGCAGGA+GGG | 0.681270 | 4_3:-23144541 | None:intergenic |
| CTGATGAGAAGCTTTGAAGG+AGG | 0.702373 | 4_3:-23144092 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGATGTTATTATTTTTTA+GGG | - | chr4_3:23144739-23144758 | None:intergenic | 10.0% |
| !!! | TAATGATGTTATTATTTTTT+AGG | - | chr4_3:23144740-23144759 | None:intergenic | 10.0% |
| !!! | AATGATGTTATTATTTTTTA+GGG | - | chr4_3:23144739-23144758 | None:intergenic | 10.0% |
| !!! | TAATGATGTTATTATTTTTT+AGG | - | chr4_3:23144740-23144759 | None:intergenic | 10.0% |
| !! | TTTGTTAAGAAAGTTAAAAA+AGG | - | chr4_3:23144252-23144271 | None:intergenic | 15.0% |
| !! | TTTGTTAAGAAAGTTAAAAA+AGG | - | chr4_3:23144252-23144271 | None:intergenic | 15.0% |
| !! | TGTATACATGTTTGTATAAA+TGG | - | chr4_3:23143854-23143873 | None:intergenic | 20.0% |
| !! | AAATCATGGACAAAATAAAA+TGG | - | chr4_3:23144607-23144626 | None:intergenic | 20.0% |
| !!! | ATCCATAAATTTTTACTTGT+GGG | + | chr4_3:23144648-23144667 | Msa0635020:intron | 20.0% |
| !!! | CATTAATTTTAATCTCTAGA+TGG | - | chr4_3:23144832-23144851 | None:intergenic | 20.0% |
| !! | AAGAAAGAGAAAAAAAAGAA+TGG | + | chr4_3:23145318-23145337 | Msa0635020:CDS | 20.0% |
| !! | TGTATACATGTTTGTATAAA+TGG | - | chr4_3:23143854-23143873 | None:intergenic | 20.0% |
| !! | AAATCATGGACAAAATAAAA+TGG | - | chr4_3:23144607-23144626 | None:intergenic | 20.0% |
| !!! | ATCCATAAATTTTTACTTGT+GGG | + | chr4_3:23144648-23144667 | Msa0635020:intron | 20.0% |
| !!! | CATTAATTTTAATCTCTAGA+TGG | - | chr4_3:23144832-23144851 | None:intergenic | 20.0% |
| !! | AAGAAAGAGAAAAAAAAGAA+TGG | + | chr4_3:23145318-23145337 | Msa0635020:CDS | 20.0% |
| !!! | ATAAACTTAGCTTGTTTCAA+GGG | + | chr4_3:23144285-23144304 | Msa0635020:CDS | 25.0% |
| ! | ACTCAAAATTTGAACTTTGT+TGG | + | chr4_3:23144497-23144516 | Msa0635020:CDS | 25.0% |
| ! | TAATCCTGATTATGAAATCA+TGG | - | chr4_3:23144621-23144640 | None:intergenic | 25.0% |
| !! | GATCCATAAATTTTTACTTG+TGG | + | chr4_3:23144647-23144666 | Msa0635020:intron | 25.0% |
| !!! | ATAAACTTAGCTTGTTTCAA+GGG | + | chr4_3:23144285-23144304 | Msa0635020:CDS | 25.0% |
| ! | ACTCAAAATTTGAACTTTGT+TGG | + | chr4_3:23144497-23144516 | Msa0635020:CDS | 25.0% |
| ! | TAATCCTGATTATGAAATCA+TGG | - | chr4_3:23144621-23144640 | None:intergenic | 25.0% |
| !! | GATCCATAAATTTTTACTTG+TGG | + | chr4_3:23144647-23144666 | Msa0635020:intron | 25.0% |
| ! | ATACAGCTTTATAAGTTCCA+TGG | + | chr4_3:23143869-23143888 | Msa0635020:CDS | 30.0% |
| ! | ATAGGACACTAACTTTAGAA+GGG | - | chr4_3:23143992-23144011 | None:intergenic | 30.0% |
| TATAGGACACTAACTTTAGA+AGG | - | chr4_3:23143993-23144012 | None:intergenic | 30.0% | |
| CTAAAGTTAGTGTCCTATAT+AGG | + | chr4_3:23143994-23144013 | Msa0635020:CDS | 30.0% | |
| !! | GATAAACTTAGCTTGTTTCA+AGG | + | chr4_3:23144284-23144303 | Msa0635020:CDS | 30.0% |
| !! | TAAACTTAGCTTGTTTCAAG+GGG | + | chr4_3:23144286-23144305 | Msa0635020:CDS | 30.0% |
| CAAAATTTGAACTTTGTTGG+TGG | + | chr4_3:23144500-23144519 | Msa0635020:CDS | 30.0% | |
| TTGTCCATGATTTCATAATC+AGG | + | chr4_3:23144614-23144633 | Msa0635020:intron | 30.0% | |
| ! | TTCATAATCAGGATTAGTGA+CGG | + | chr4_3:23144625-23144644 | Msa0635020:intron | 30.0% |
| CTCCCACAAGTAAAAATTTA+TGG | - | chr4_3:23144653-23144672 | None:intergenic | 30.0% | |
| CATAGATTTATATCCTGATC+AGG | - | chr4_3:23144964-23144983 | None:intergenic | 30.0% | |
| !! | AGCTCAAATGTTTTTCAAAG+TGG | + | chr4_3:23145105-23145124 | Msa0635020:intron | 30.0% |
| !! | GCTCAAATGTTTTTCAAAGT+GGG | + | chr4_3:23145106-23145125 | Msa0635020:intron | 30.0% |
| GCTGTTCTTCAATATCTTTA+AGG | - | chr4_3:23145159-23145178 | None:intergenic | 30.0% | |
| ! | AAAGAAGCTATTTCAGGAAA+AGG | + | chr4_3:23145179-23145198 | Msa0635020:CDS | 30.0% |
| ! | AAGAAGCTATTTCAGGAAAA+GGG | + | chr4_3:23145180-23145199 | Msa0635020:CDS | 30.0% |
| ATTTCAGGAAAAGGGAAAAA+AGG | + | chr4_3:23145188-23145207 | Msa0635020:CDS | 30.0% | |
| TACAAGATTACTCCAATATG+TGG | + | chr4_3:23145374-23145393 | Msa0635020:CDS | 30.0% | |
| ! | ATACAGCTTTATAAGTTCCA+TGG | + | chr4_3:23143869-23143888 | Msa0635020:CDS | 30.0% |
| ! | ATAGGACACTAACTTTAGAA+GGG | - | chr4_3:23143992-23144011 | None:intergenic | 30.0% |
| TATAGGACACTAACTTTAGA+AGG | - | chr4_3:23143993-23144012 | None:intergenic | 30.0% | |
| CTAAAGTTAGTGTCCTATAT+AGG | + | chr4_3:23143994-23144013 | Msa0635020:CDS | 30.0% | |
| !! | GATAAACTTAGCTTGTTTCA+AGG | + | chr4_3:23144284-23144303 | Msa0635020:CDS | 30.0% |
| !! | TAAACTTAGCTTGTTTCAAG+GGG | + | chr4_3:23144286-23144305 | Msa0635020:CDS | 30.0% |
| CAAAATTTGAACTTTGTTGG+TGG | + | chr4_3:23144500-23144519 | Msa0635020:CDS | 30.0% | |
| TTGTCCATGATTTCATAATC+AGG | + | chr4_3:23144614-23144633 | Msa0635020:intron | 30.0% | |
| ! | TTCATAATCAGGATTAGTGA+CGG | + | chr4_3:23144625-23144644 | Msa0635020:intron | 30.0% |
| CTCCCACAAGTAAAAATTTA+TGG | - | chr4_3:23144653-23144672 | None:intergenic | 30.0% | |
| CATAGATTTATATCCTGATC+AGG | - | chr4_3:23144964-23144983 | None:intergenic | 30.0% | |
| !! | AGCTCAAATGTTTTTCAAAG+TGG | + | chr4_3:23145105-23145124 | Msa0635020:intron | 30.0% |
| !! | GCTCAAATGTTTTTCAAAGT+GGG | + | chr4_3:23145106-23145125 | Msa0635020:intron | 30.0% |
| GCTGTTCTTCAATATCTTTA+AGG | - | chr4_3:23145159-23145178 | None:intergenic | 30.0% | |
| ! | AAAGAAGCTATTTCAGGAAA+AGG | + | chr4_3:23145179-23145198 | Msa0635020:CDS | 30.0% |
| ! | AAGAAGCTATTTCAGGAAAA+GGG | + | chr4_3:23145180-23145199 | Msa0635020:CDS | 30.0% |
| ATTTCAGGAAAAGGGAAAAA+AGG | + | chr4_3:23145188-23145207 | Msa0635020:CDS | 30.0% | |
| TACAAGATTACTCCAATATG+TGG | + | chr4_3:23145374-23145393 | Msa0635020:CDS | 30.0% | |
| TTCAAAGATGAGGCTAATTC+AGG | - | chr4_3:23143963-23143982 | None:intergenic | 35.0% | |
| !! | TTGTTTTGCACCACTTGTTA+AGG | + | chr4_3:23144127-23144146 | Msa0635020:CDS | 35.0% |
| !! | TGTTTTGCACCACTTGTTAA+GGG | + | chr4_3:23144128-23144147 | Msa0635020:CDS | 35.0% |
| TGAAGAATTCCCTTAACAAG+TGG | - | chr4_3:23144140-23144159 | None:intergenic | 35.0% | |
| AATTCTTCATCCATGTTCTC+TGG | + | chr4_3:23144151-23144170 | Msa0635020:CDS | 35.0% | |
| ! | AATGTTTAAGCTTGCTCTCA+AGG | + | chr4_3:23144328-23144347 | Msa0635020:CDS | 35.0% |
| ! | TTTGGAATCTTTGGTTGATG+TGG | + | chr4_3:23144373-23144392 | Msa0635020:CDS | 35.0% |
| AAAACTGTGCATTTGATGTG+AGG | - | chr4_3:23144443-23144462 | None:intergenic | 35.0% | |
| ATTTATATCCTGATCAGGCA+CGG | - | chr4_3:23144959-23144978 | None:intergenic | 35.0% | |
| ! | AACAGCAAAGAAGCTATTTC+AGG | + | chr4_3:23145173-23145192 | Msa0635020:CDS | 35.0% |
| GTAATGATGACTCTGCATAA+TGG | + | chr4_3:23145293-23145312 | Msa0635020:CDS | 35.0% | |
| AAGAAACTCATATATGACGC+AGG | + | chr4_3:23145341-23145360 | Msa0635020:CDS | 35.0% | |
| TTCAAAGATGAGGCTAATTC+AGG | - | chr4_3:23143963-23143982 | None:intergenic | 35.0% | |
| !! | TTGTTTTGCACCACTTGTTA+AGG | + | chr4_3:23144127-23144146 | Msa0635020:CDS | 35.0% |
| !! | TGTTTTGCACCACTTGTTAA+GGG | + | chr4_3:23144128-23144147 | Msa0635020:CDS | 35.0% |
| TGAAGAATTCCCTTAACAAG+TGG | - | chr4_3:23144140-23144159 | None:intergenic | 35.0% | |
| AATTCTTCATCCATGTTCTC+TGG | + | chr4_3:23144151-23144170 | Msa0635020:CDS | 35.0% | |
| ! | AATGTTTAAGCTTGCTCTCA+AGG | + | chr4_3:23144328-23144347 | Msa0635020:CDS | 35.0% |
| ! | TTTGGAATCTTTGGTTGATG+TGG | + | chr4_3:23144373-23144392 | Msa0635020:CDS | 35.0% |
| AAAACTGTGCATTTGATGTG+AGG | - | chr4_3:23144443-23144462 | None:intergenic | 35.0% | |
| ATTTATATCCTGATCAGGCA+CGG | - | chr4_3:23144959-23144978 | None:intergenic | 35.0% | |
| ! | AACAGCAAAGAAGCTATTTC+AGG | + | chr4_3:23145173-23145192 | Msa0635020:CDS | 35.0% |
| GTAATGATGACTCTGCATAA+TGG | + | chr4_3:23145293-23145312 | Msa0635020:CDS | 35.0% | |
| AAGAAACTCATATATGACGC+AGG | + | chr4_3:23145341-23145360 | Msa0635020:CDS | 35.0% | |
| GTAGATGCAATCCACAAACA+TGG | + | chr4_3:23143921-23143940 | Msa0635020:CDS | 40.0% | |
| TCATAGGCTTTCCATGTTTG+TGG | - | chr4_3:23143935-23143954 | None:intergenic | 40.0% | |
| GCTAATTCAGGAACAGTCAT+AGG | - | chr4_3:23143951-23143970 | None:intergenic | 40.0% | |
| AGGGTGAAGTTTCAAAGATG+AGG | - | chr4_3:23143973-23143992 | None:intergenic | 40.0% | |
| ATCCATGTTCTCTGGATATG+TGG | + | chr4_3:23144159-23144178 | Msa0635020:CDS | 40.0% | |
| CTCAGAGAACCATTTCTTAG+AGG | - | chr4_3:23144189-23144208 | None:intergenic | 40.0% | |
| ! | CTCTAAGAAATGGTTCTCTG+AGG | + | chr4_3:23144187-23144206 | Msa0635020:CDS | 40.0% |
| ! | TGCACTCTATGAAAGTGCAA+TGG | + | chr4_3:23144220-23144239 | Msa0635020:CDS | 40.0% |
| ! | GCACTCTATGAAAGTGCAAT+GGG | + | chr4_3:23144221-23144240 | Msa0635020:CDS | 40.0% |
| ! | CACTCTATGAAAGTGCAATG+GGG | + | chr4_3:23144222-23144241 | Msa0635020:CDS | 40.0% |
| ! | ACTCTATGAAAGTGCAATGG+GGG | + | chr4_3:23144223-23144242 | Msa0635020:CDS | 40.0% |
| ATTCCAAACCCTCAAACACA+TGG | - | chr4_3:23144361-23144380 | None:intergenic | 40.0% | |
| ! | GTTTGAGGGTTTGGAATCTT+TGG | + | chr4_3:23144364-23144383 | Msa0635020:CDS | 40.0% |
| !!! | CACAGTTTTAGATCAACCAC+AGG | + | chr4_3:23144454-23144473 | Msa0635020:CDS | 40.0% |
| TTTAGATCAACCACAGGTTG+TGG | + | chr4_3:23144460-23144479 | Msa0635020:CDS | 40.0% | |
| TTGAGTAAAACAGCATCTGC+AGG | - | chr4_3:23144548-23144567 | None:intergenic | 40.0% | |
| !!! | TGCAGATGCTGTTTTACTCA+AGG | + | chr4_3:23144547-23144566 | Msa0635020:CDS | 40.0% |
| ! | AAAGTGGGTTCTGCATGATT+GGG | + | chr4_3:23145121-23145140 | Msa0635020:intron | 40.0% |
| GTCAAAGTGCAATTGCAACT+CGG | - | chr4_3:23145270-23145289 | None:intergenic | 40.0% | |
| GTTGCAATTGCACTTTGACA+TGG | + | chr4_3:23145271-23145290 | Msa0635020:CDS | 40.0% | |
| AGAGACTTGAAGCCACATAT+TGG | - | chr4_3:23145389-23145408 | None:intergenic | 40.0% | |
| GTAGATGCAATCCACAAACA+TGG | + | chr4_3:23143921-23143940 | Msa0635020:CDS | 40.0% | |
| TCATAGGCTTTCCATGTTTG+TGG | - | chr4_3:23143935-23143954 | None:intergenic | 40.0% | |
| GCTAATTCAGGAACAGTCAT+AGG | - | chr4_3:23143951-23143970 | None:intergenic | 40.0% | |
| AGGGTGAAGTTTCAAAGATG+AGG | - | chr4_3:23143973-23143992 | None:intergenic | 40.0% | |
| ATCCATGTTCTCTGGATATG+TGG | + | chr4_3:23144159-23144178 | Msa0635020:CDS | 40.0% | |
| CTCAGAGAACCATTTCTTAG+AGG | - | chr4_3:23144189-23144208 | None:intergenic | 40.0% | |
| ! | CTCTAAGAAATGGTTCTCTG+AGG | + | chr4_3:23144187-23144206 | Msa0635020:CDS | 40.0% |
| ! | TGCACTCTATGAAAGTGCAA+TGG | + | chr4_3:23144220-23144239 | Msa0635020:CDS | 40.0% |
| ! | GCACTCTATGAAAGTGCAAT+GGG | + | chr4_3:23144221-23144240 | Msa0635020:CDS | 40.0% |
| ! | CACTCTATGAAAGTGCAATG+GGG | + | chr4_3:23144222-23144241 | Msa0635020:CDS | 40.0% |
| ! | ACTCTATGAAAGTGCAATGG+GGG | + | chr4_3:23144223-23144242 | Msa0635020:CDS | 40.0% |
| ATTCCAAACCCTCAAACACA+TGG | - | chr4_3:23144361-23144380 | None:intergenic | 40.0% | |
| ! | GTTTGAGGGTTTGGAATCTT+TGG | + | chr4_3:23144364-23144383 | Msa0635020:CDS | 40.0% |
| !!! | CACAGTTTTAGATCAACCAC+AGG | + | chr4_3:23144454-23144473 | Msa0635020:CDS | 40.0% |
| TTTAGATCAACCACAGGTTG+TGG | + | chr4_3:23144460-23144479 | Msa0635020:CDS | 40.0% | |
| TTGAGTAAAACAGCATCTGC+AGG | - | chr4_3:23144548-23144567 | None:intergenic | 40.0% | |
| !!! | TGCAGATGCTGTTTTACTCA+AGG | + | chr4_3:23144547-23144566 | Msa0635020:CDS | 40.0% |
| ! | AAAGTGGGTTCTGCATGATT+GGG | + | chr4_3:23145121-23145140 | Msa0635020:intron | 40.0% |
| GTCAAAGTGCAATTGCAACT+CGG | - | chr4_3:23145270-23145289 | None:intergenic | 40.0% | |
| GTTGCAATTGCACTTTGACA+TGG | + | chr4_3:23145271-23145290 | Msa0635020:CDS | 40.0% | |
| AGAGACTTGAAGCCACATAT+TGG | - | chr4_3:23145389-23145408 | None:intergenic | 40.0% | |
| CTCAAATCAGCTGTGGAACT+AGG | + | chr4_3:23143894-23143913 | Msa0635020:CDS | 45.0% | |
| GCAAGCGCAAGAACCTATAT+AGG | - | chr4_3:23144010-23144029 | None:intergenic | 45.0% | |
| !! | CTGATGAGAAGCTTTGAAGG+AGG | - | chr4_3:23144095-23144114 | None:intergenic | 45.0% |
| ! | CCACTGATGAGAAGCTTTGA+AGG | - | chr4_3:23144098-23144117 | None:intergenic | 45.0% |
| CCTTCAAAGCTTCTCATCAG+TGG | + | chr4_3:23144095-23144114 | Msa0635020:CDS | 45.0% | |
| TGCCACATATCCAGAGAACA+TGG | - | chr4_3:23144164-23144183 | None:intergenic | 45.0% | |
| ! | TGTGGCACTCCTCTAAGAAA+TGG | + | chr4_3:23144177-23144196 | Msa0635020:CDS | 45.0% |
| ! | GAAATGGTTCTCTGAGGAGA+AGG | + | chr4_3:23144193-23144212 | Msa0635020:CDS | 45.0% |
| CATTTGTGAATCAGCTGCCA+TGG | - | chr4_3:23144312-23144331 | None:intergenic | 45.0% | |
| ! | GAATCTTTGGTTGATGTGGC+AGG | + | chr4_3:23144377-23144396 | Msa0635020:CDS | 45.0% |
| GATAAGTTAGCCACAACCTG+TGG | - | chr4_3:23144473-23144492 | None:intergenic | 45.0% | |
| CAGGTTGTGGCTAACTTATC+TGG | + | chr4_3:23144473-23144492 | Msa0635020:CDS | 45.0% | |
| GTAAAACAGCATCTGCAGGA+GGG | - | chr4_3:23144544-23144563 | None:intergenic | 45.0% | |
| AGTAAAACAGCATCTGCAGG+AGG | - | chr4_3:23144545-23144564 | None:intergenic | 45.0% | |
| ATCCACTCACATGAGATTGG+AGG | - | chr4_3:23144936-23144955 | None:intergenic | 45.0% | |
| ! | CAAAGTGGGTTCTGCATGAT+TGG | + | chr4_3:23145120-23145139 | Msa0635020:intron | 45.0% |
| CTCAAATCAGCTGTGGAACT+AGG | + | chr4_3:23143894-23143913 | Msa0635020:CDS | 45.0% | |
| GCAAGCGCAAGAACCTATAT+AGG | - | chr4_3:23144010-23144029 | None:intergenic | 45.0% | |
| !! | CTGATGAGAAGCTTTGAAGG+AGG | - | chr4_3:23144095-23144114 | None:intergenic | 45.0% |
| ! | CCACTGATGAGAAGCTTTGA+AGG | - | chr4_3:23144098-23144117 | None:intergenic | 45.0% |
| CCTTCAAAGCTTCTCATCAG+TGG | + | chr4_3:23144095-23144114 | Msa0635020:CDS | 45.0% | |
| TGCCACATATCCAGAGAACA+TGG | - | chr4_3:23144164-23144183 | None:intergenic | 45.0% | |
| ! | TGTGGCACTCCTCTAAGAAA+TGG | + | chr4_3:23144177-23144196 | Msa0635020:CDS | 45.0% |
| ! | GAAATGGTTCTCTGAGGAGA+AGG | + | chr4_3:23144193-23144212 | Msa0635020:CDS | 45.0% |
| CATTTGTGAATCAGCTGCCA+TGG | - | chr4_3:23144312-23144331 | None:intergenic | 45.0% | |
| ! | GAATCTTTGGTTGATGTGGC+AGG | + | chr4_3:23144377-23144396 | Msa0635020:CDS | 45.0% |
| GATAAGTTAGCCACAACCTG+TGG | - | chr4_3:23144473-23144492 | None:intergenic | 45.0% | |
| CAGGTTGTGGCTAACTTATC+TGG | + | chr4_3:23144473-23144492 | Msa0635020:CDS | 45.0% | |
| GTAAAACAGCATCTGCAGGA+GGG | - | chr4_3:23144544-23144563 | None:intergenic | 45.0% | |
| AGTAAAACAGCATCTGCAGG+AGG | - | chr4_3:23144545-23144564 | None:intergenic | 45.0% | |
| ATCCACTCACATGAGATTGG+AGG | - | chr4_3:23144936-23144955 | None:intergenic | 45.0% | |
| ! | CAAAGTGGGTTCTGCATGAT+TGG | + | chr4_3:23145120-23145139 | Msa0635020:intron | 45.0% |
| !! | CACAGCTGATTTGAGTGCCA+TGG | - | chr4_3:23143889-23143908 | None:intergenic | 50.0% |
| CATGGCACTCAAATCAGCTG+TGG | + | chr4_3:23143887-23143906 | Msa0635020:CDS | 50.0% | |
| ! | TTGCGCTTGCTAACACACGA+TGG | + | chr4_3:23144020-23144039 | Msa0635020:CDS | 50.0% |
| !! | TAGCTTGTTTCAAGGGGCCA+TGG | + | chr4_3:23144292-23144311 | Msa0635020:CDS | 50.0% |
| GACTGCAGCCATGTGTTTGA+GGG | + | chr4_3:23144350-23144369 | Msa0635020:CDS | 50.0% | |
| CAGCCATGTGTTTGAGGGTT+TGG | + | chr4_3:23144355-23144374 | Msa0635020:CDS | 50.0% | |
| ! | TCTTTGGTTGATGTGGCAGG+TGG | + | chr4_3:23144380-23144399 | Msa0635020:CDS | 50.0% |
| TGCCTCCAATCTCATGTGAG+TGG | + | chr4_3:23144931-23144950 | Msa0635020:intron | 50.0% | |
| CGGATCCACTCACATGAGAT+TGG | - | chr4_3:23144939-23144958 | None:intergenic | 50.0% | |
| !! | CACAGCTGATTTGAGTGCCA+TGG | - | chr4_3:23143889-23143908 | None:intergenic | 50.0% |
| CATGGCACTCAAATCAGCTG+TGG | + | chr4_3:23143887-23143906 | Msa0635020:CDS | 50.0% | |
| ! | TTGCGCTTGCTAACACACGA+TGG | + | chr4_3:23144020-23144039 | Msa0635020:CDS | 50.0% |
| !! | TAGCTTGTTTCAAGGGGCCA+TGG | + | chr4_3:23144292-23144311 | Msa0635020:CDS | 50.0% |
| GACTGCAGCCATGTGTTTGA+GGG | + | chr4_3:23144350-23144369 | Msa0635020:CDS | 50.0% | |
| CAGCCATGTGTTTGAGGGTT+TGG | + | chr4_3:23144355-23144374 | Msa0635020:CDS | 50.0% | |
| ! | TCTTTGGTTGATGTGGCAGG+TGG | + | chr4_3:23144380-23144399 | Msa0635020:CDS | 50.0% |
| TGCCTCCAATCTCATGTGAG+TGG | + | chr4_3:23144931-23144950 | Msa0635020:intron | 50.0% | |
| CGGATCCACTCACATGAGAT+TGG | - | chr4_3:23144939-23144958 | None:intergenic | 50.0% | |
| GGACTGCAGCCATGTGTTTG+AGG | + | chr4_3:23144349-23144368 | Msa0635020:CDS | 55.0% | |
| GTTGATGTGGCAGGTGGAAC+TGG | + | chr4_3:23144386-23144405 | Msa0635020:CDS | 55.0% | |
| GGACTGCAGCCATGTGTTTG+AGG | + | chr4_3:23144349-23144368 | Msa0635020:CDS | 55.0% | |
| GTTGATGTGGCAGGTGGAAC+TGG | + | chr4_3:23144386-23144405 | Msa0635020:CDS | 55.0% | |
| GAGTGGATCCGTGCCTGATC+AGG | + | chr4_3:23144948-23144967 | Msa0635020:intron | 60.0% | |
| GAGTGGATCCGTGCCTGATC+AGG | + | chr4_3:23144948-23144967 | Msa0635020:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 23143798 | 23145427 | 23143798 | ID=Msa0635020;Name=Msa0635020 |
| chr4_3 | mRNA | 23143798 | 23145427 | 23143798 | ID=Msa0635020-mRNA-1;Parent=Msa0635020;Name=Msa0635020-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|357 |
| chr4_3 | exon | 23143798 | 23144568 | 23143798 | ID=Msa0635020-mRNA-1:exon:5963;Parent=Msa0635020-mRNA-1 |
| chr4_3 | exon | 23145125 | 23145427 | 23145125 | ID=Msa0635020-mRNA-1:exon:5964;Parent=Msa0635020-mRNA-1 |
| chr4_3 | CDS | 23143798 | 23144568 | 23143798 | ID=Msa0635020-mRNA-1:cds;Parent=Msa0635020-mRNA-1 |
| chr4_3 | CDS | 23145125 | 23145427 | 23145125 | ID=Msa0635020-mRNA-1:cds;Parent=Msa0635020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
