Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539590 | XP_039689920.1 | 98.319 | 357 | 6 | 0 | 1 | 357 | 1 | 357 | 0.0 | 721 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539590 | sp|O24305|M3OM1_PEA | 78.177 | 362 | 72 | 2 | 1 | 357 | 1 | 360 | 0.0 | 584 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539590 | A0A072UJL0 | 98.039 | 357 | 7 | 0 | 1 | 357 | 1 | 357 | 0.0 | 719 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0539590 | Msa0595350 | 0.808582 | 2.885598e-50 | -8.615850e-47 |
| Msa0539590 | Msa0595390 | 0.802441 | 5.601180e-49 | -8.615850e-47 |
| Msa0539590 | Msa0635020 | 0.803787 | 2.951332e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539590 | MtrunA17_Chr4g0014591 | 98.039 | 357 | 7 | 0 | 1 | 357 | 1 | 357 | 0.0 | 719 |
| Msa0539590 | MtrunA17_Chr4g0014661 | 97.479 | 357 | 9 | 0 | 1 | 357 | 1 | 357 | 0.0 | 716 |
| Msa0539590 | MtrunA17_Chr4g0046361 | 77.562 | 361 | 77 | 1 | 1 | 357 | 1 | 361 | 0.0 | 580 |
| Msa0539590 | MtrunA17_Chr4g0014681 | 78.237 | 363 | 73 | 1 | 1 | 357 | 1 | 363 | 0.0 | 570 |
| Msa0539590 | MtrunA17_Chr4g0014561 | 77.686 | 363 | 75 | 1 | 1 | 357 | 1 | 363 | 0.0 | 566 |
| Msa0539590 | MtrunA17_Chr4g0014641 | 76.309 | 363 | 80 | 1 | 1 | 357 | 1 | 363 | 0.0 | 557 |
| Msa0539590 | MtrunA17_Chr4g0046341 | 76.099 | 364 | 80 | 1 | 1 | 357 | 1 | 364 | 0.0 | 554 |
| Msa0539590 | MtrunA17_Chr4g0014601 | 97.308 | 260 | 7 | 0 | 1 | 260 | 1 | 260 | 0.0 | 518 |
| Msa0539590 | MtrunA17_Chr7g0219141 | 48.876 | 356 | 174 | 4 | 6 | 357 | 6 | 357 | 8.18e-121 | 352 |
| Msa0539590 | MtrunA17_Chr1g0188391 | 49.315 | 365 | 173 | 6 | 1 | 357 | 1 | 361 | 8.98e-119 | 347 |
| Msa0539590 | MtrunA17_Chr7g0219161 | 49.419 | 344 | 166 | 4 | 6 | 345 | 6 | 345 | 3.62e-118 | 346 |
| Msa0539590 | MtrunA17_Chr7g0223231 | 47.863 | 351 | 175 | 4 | 6 | 355 | 5 | 348 | 1.09e-117 | 344 |
| Msa0539590 | MtrunA17_Chr5g0432251 | 48.295 | 352 | 174 | 6 | 11 | 357 | 11 | 359 | 5.34e-115 | 338 |
| Msa0539590 | MtrunA17_Chr5g0432301 | 46.961 | 362 | 181 | 7 | 3 | 356 | 1 | 359 | 7.13e-114 | 335 |
| Msa0539590 | MtrunA17_Chr5g0432241 | 46.518 | 359 | 184 | 5 | 4 | 357 | 5 | 360 | 1.04e-111 | 330 |
| Msa0539590 | MtrunA17_Chr4g0046531 | 50.279 | 358 | 173 | 4 | 1 | 356 | 1 | 355 | 1.37e-111 | 341 |
| Msa0539590 | MtrunA17_Chr4g0046531 | 49.304 | 359 | 177 | 4 | 1 | 357 | 363 | 718 | 2.44e-109 | 335 |
| Msa0539590 | MtrunA17_Chr7g0223241 | 47.009 | 351 | 178 | 4 | 6 | 355 | 5 | 348 | 1.31e-110 | 326 |
| Msa0539590 | MtrunA17_Chr5g0432261 | 46.000 | 350 | 157 | 3 | 11 | 357 | 7 | 327 | 3.30e-107 | 317 |
| Msa0539590 | MtrunA17_Chr5g0432211 | 45.272 | 349 | 175 | 6 | 11 | 357 | 11 | 345 | 7.78e-106 | 314 |
| Msa0539590 | MtrunA17_Chr4g0040621 | 45.115 | 348 | 188 | 2 | 11 | 357 | 24 | 369 | 1.03e-104 | 312 |
| Msa0539590 | MtrunA17_Chr1g0188371 | 46.866 | 335 | 169 | 5 | 9 | 337 | 9 | 340 | 4.17e-96 | 290 |
| Msa0539590 | MtrunA17_Chr3g0121301 | 36.471 | 340 | 201 | 10 | 20 | 353 | 27 | 357 | 2.05e-57 | 190 |
| Msa0539590 | MtrunA17_Chr4g0022021 | 33.889 | 360 | 228 | 8 | 3 | 357 | 14 | 368 | 4.49e-57 | 189 |
| Msa0539590 | MtrunA17_Chr4g0021981 | 33.611 | 360 | 229 | 8 | 3 | 357 | 14 | 368 | 5.03e-56 | 187 |
| Msa0539590 | MtrunA17_Chr7g0219171 | 58.209 | 134 | 55 | 1 | 224 | 357 | 116 | 248 | 3.31e-50 | 168 |
| Msa0539590 | MtrunA17_Chr7g0219171 | 31.481 | 216 | 109 | 5 | 6 | 213 | 6 | 190 | 5.23e-28 | 110 |
| Msa0539590 | MtrunA17_Chr4g0014611 | 96.000 | 100 | 4 | 0 | 258 | 357 | 8 | 107 | 3.10e-45 | 150 |
| Msa0539590 | MtrunA17_Chr4g0014671 | 96.190 | 105 | 4 | 0 | 253 | 357 | 30 | 134 | 6.96e-42 | 142 |
| Msa0539590 | MtrunA17_Chr5g0448091 | 31.953 | 338 | 207 | 12 | 29 | 353 | 31 | 358 | 2.60e-41 | 148 |
| Msa0539590 | MtrunA17_Chr1g0200491 | 30.484 | 351 | 222 | 8 | 5 | 343 | 17 | 357 | 5.06e-40 | 145 |
| Msa0539590 | MtrunA17_Chr3g0128011 | 32.203 | 354 | 200 | 12 | 9 | 343 | 71 | 403 | 6.90e-40 | 145 |
| Msa0539590 | MtrunA17_Chr7g0276401 | 30.655 | 336 | 215 | 9 | 26 | 352 | 42 | 368 | 3.31e-39 | 143 |
| Msa0539590 | MtrunA17_Chr8g0367441 | 31.077 | 325 | 205 | 9 | 26 | 338 | 41 | 358 | 1.44e-38 | 141 |
| Msa0539590 | MtrunA17_Chr8g0367501 | 30.028 | 363 | 234 | 10 | 5 | 355 | 6 | 360 | 1.79e-38 | 142 |
| Msa0539590 | MtrunA17_Chr7g0276411 | 30.347 | 346 | 217 | 9 | 9 | 342 | 14 | 347 | 3.41e-38 | 140 |
| Msa0539590 | MtrunA17_Chr2g0314271 | 33.230 | 322 | 196 | 9 | 31 | 342 | 27 | 339 | 4.44e-38 | 139 |
| Msa0539590 | MtrunA17_Chr7g0218131 | 29.377 | 337 | 219 | 9 | 32 | 356 | 40 | 369 | 8.89e-38 | 139 |
| Msa0539590 | MtrunA17_Chr8g0367491 | 29.674 | 337 | 217 | 10 | 26 | 349 | 40 | 369 | 1.40e-37 | 138 |
| Msa0539590 | MtrunA17_Chr1g0163611 | 29.395 | 347 | 225 | 9 | 24 | 356 | 29 | 369 | 2.92e-37 | 137 |
| Msa0539590 | MtrunA17_Chr1g0163601 | 30.330 | 333 | 214 | 8 | 24 | 344 | 29 | 355 | 3.45e-37 | 137 |
| Msa0539590 | MtrunA17_Chr8g0367451 | 30.769 | 325 | 206 | 9 | 26 | 338 | 40 | 357 | 1.02e-36 | 136 |
| Msa0539590 | MtrunA17_Chr7g0218301 | 28.529 | 340 | 218 | 8 | 32 | 355 | 40 | 370 | 4.15e-36 | 134 |
| Msa0539590 | MtrunA17_Chr7g0218261 | 28.228 | 333 | 222 | 8 | 32 | 355 | 39 | 363 | 1.07e-35 | 133 |
| Msa0539590 | MtrunA17_Chr7g0218271 | 28.319 | 339 | 220 | 8 | 32 | 355 | 40 | 370 | 1.70e-35 | 133 |
| Msa0539590 | MtrunA17_Chr7g0218181 | 26.488 | 336 | 227 | 9 | 32 | 356 | 40 | 366 | 5.88e-35 | 131 |
| Msa0539590 | MtrunA17_Chr2g0307521 | 29.204 | 339 | 211 | 10 | 32 | 355 | 34 | 358 | 3.65e-34 | 129 |
| Msa0539590 | MtrunA17_Chr3g0085211 | 30.982 | 326 | 209 | 9 | 28 | 344 | 38 | 356 | 7.83e-34 | 128 |
| Msa0539590 | MtrunA17_Chr1g0163621 | 29.254 | 335 | 213 | 9 | 25 | 344 | 44 | 369 | 8.75e-34 | 128 |
| Msa0539590 | MtrunA17_Chr7g0218211 | 28.743 | 334 | 220 | 8 | 32 | 355 | 39 | 364 | 7.08e-33 | 125 |
| Msa0539590 | MtrunA17_Chr8g0345851 | 31.395 | 258 | 168 | 5 | 89 | 344 | 27 | 277 | 8.02e-33 | 124 |
| Msa0539590 | MtrunA17_Chr8g0367381 | 30.000 | 310 | 181 | 9 | 26 | 324 | 41 | 325 | 1.99e-31 | 121 |
| Msa0539590 | MtrunA17_Chr3g0085201 | 30.539 | 334 | 207 | 13 | 32 | 352 | 29 | 350 | 2.17e-30 | 119 |
| Msa0539590 | MtrunA17_Chr3g0130011 | 28.267 | 329 | 218 | 11 | 23 | 342 | 24 | 343 | 5.36e-29 | 115 |
| Msa0539590 | MtrunA17_Chr4g0014621 | 96.970 | 66 | 2 | 0 | 292 | 357 | 197 | 262 | 5.91e-29 | 112 |
| Msa0539590 | MtrunA17_Chr3g0130061 | 26.829 | 328 | 224 | 10 | 23 | 342 | 24 | 343 | 4.15e-27 | 110 |
| Msa0539590 | MtrunA17_Chr8g0367461 | 37.963 | 108 | 62 | 3 | 244 | 349 | 1 | 105 | 5.19e-18 | 79.0 |
| Msa0539590 | MtrunA17_Chr6g0482291 | 29.560 | 159 | 100 | 3 | 185 | 342 | 14 | 161 | 3.16e-17 | 78.6 |
| Msa0539590 | MtrunA17_Chr4g0011691 | 39.796 | 98 | 51 | 3 | 6 | 101 | 16 | 107 | 1.13e-14 | 72.8 |
| Msa0539590 | MtrunA17_Chr4g0011691 | 39.583 | 96 | 54 | 3 | 259 | 353 | 140 | 232 | 1.71e-11 | 63.5 |
| Msa0539590 | MtrunA17_Chr8g0367401 | 33.945 | 109 | 70 | 1 | 149 | 257 | 4 | 110 | 6.97e-14 | 68.2 |
| Msa0539590 | MtrunA17_Chr4g0014551 | 88.636 | 44 | 5 | 0 | 314 | 357 | 1 | 44 | 3.73e-13 | 63.2 |
| Msa0539590 | MtrunA17_Chr1g0170941 | 43.939 | 66 | 37 | 0 | 190 | 255 | 11 | 76 | 6.63e-11 | 58.2 |
| Msa0539590 | MtrunA17_Chr8g0367391 | 32.203 | 118 | 73 | 4 | 228 | 342 | 6 | 119 | 8.06e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539590 | AT4G35150.1 | 31.356 | 354 | 185 | 9 | 16 | 356 | 15 | 323 | 2.41e-46 | 160 |
| Msa0539590 | AT4G35160.1 | 33.333 | 360 | 213 | 11 | 16 | 356 | 29 | 380 | 1.14e-44 | 158 |
| Msa0539590 | AT5G54160.1 | 31.988 | 347 | 210 | 10 | 9 | 344 | 17 | 348 | 1.08e-42 | 152 |
| Msa0539590 | AT3G53140.1 | 31.765 | 340 | 206 | 11 | 31 | 354 | 27 | 356 | 1.28e-37 | 139 |
| Msa0539590 | AT1G77520.1 | 30.814 | 344 | 213 | 9 | 31 | 356 | 44 | 380 | 6.37e-37 | 137 |
| Msa0539590 | AT1G33030.1 | 29.394 | 330 | 212 | 10 | 31 | 347 | 21 | 342 | 3.57e-35 | 132 |
| Msa0539590 | AT5G53810.1 | 31.700 | 347 | 211 | 10 | 29 | 356 | 38 | 377 | 2.14e-34 | 130 |
| Msa0539590 | AT1G51990.2 | 30.792 | 341 | 210 | 12 | 33 | 357 | 32 | 362 | 2.30e-33 | 127 |
| Msa0539590 | AT1G51990.1 | 30.792 | 341 | 210 | 12 | 33 | 357 | 32 | 362 | 2.37e-32 | 124 |
| Msa0539590 | AT1G63140.2 | 29.167 | 360 | 225 | 12 | 9 | 347 | 19 | 369 | 5.26e-31 | 121 |
| Msa0539590 | AT1G63140.4 | 29.167 | 360 | 225 | 12 | 9 | 347 | 39 | 389 | 6.58e-31 | 121 |
| Msa0539590 | AT1G77530.1 | 30.814 | 344 | 213 | 9 | 31 | 356 | 44 | 380 | 2.32e-28 | 114 |
| Msa0539590 | AT1G76790.1 | 26.997 | 363 | 225 | 12 | 7 | 349 | 9 | 351 | 5.85e-27 | 110 |
| Msa0539590 | AT1G62900.1 | 33.880 | 183 | 114 | 4 | 167 | 347 | 16 | 193 | 9.26e-24 | 97.8 |
| Msa0539590 | AT1G21130.1 | 26.364 | 330 | 214 | 10 | 31 | 342 | 40 | 358 | 6.60e-21 | 93.2 |
| Msa0539590 | AT1G21110.1 | 25.688 | 327 | 214 | 10 | 31 | 339 | 40 | 355 | 6.06e-20 | 90.5 |
| Msa0539590 | AT5G37170.2 | 28.866 | 194 | 132 | 4 | 166 | 356 | 43 | 233 | 9.04e-20 | 87.4 |
| Msa0539590 | AT1G21100.1 | 26.061 | 330 | 215 | 10 | 31 | 342 | 40 | 358 | 1.79e-19 | 89.0 |
| Msa0539590 | AT5G37170.1 | 28.866 | 194 | 132 | 4 | 166 | 356 | 143 | 333 | 2.33e-19 | 88.2 |
| Msa0539590 | AT1G21120.1 | 25.758 | 330 | 216 | 11 | 31 | 342 | 40 | 358 | 5.55e-19 | 87.4 |
| Msa0539590 | AT5G37170.3 | 31.214 | 173 | 110 | 5 | 188 | 354 | 14 | 183 | 7.07e-19 | 84.0 |
| Msa0539590 | AT1G21120.2 | 25.758 | 330 | 216 | 11 | 31 | 342 | 88 | 406 | 9.34e-19 | 87.4 |
| Msa0539590 | AT1G63140.1 | 27.239 | 268 | 172 | 8 | 9 | 257 | 39 | 302 | 7.30e-14 | 72.0 |
| Msa0539590 | AT1G33030.2 | 26.160 | 237 | 160 | 7 | 31 | 257 | 21 | 252 | 9.18e-14 | 70.9 |
| Msa0539590 | AT1G33030.3 | 26.160 | 237 | 160 | 7 | 31 | 257 | 21 | 252 | 2.06e-13 | 70.1 |
Find 75 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATACATGTTTGTATAAA+TGG | 0.173388 | 4_1:-20677191 | None:intergenic |
| GCTGTTCTTCAATATCTTTA+AGG | 0.222796 | 4_1:-20678543 | None:intergenic |
| TTATATTTATAAAACAATAT+TGG | 0.245011 | 4_1:-20678931 | None:intergenic |
| TATATTTATAAAACAATATT+GGG | 0.266120 | 4_1:-20678930 | None:intergenic |
| TTTCAAAGATGAGGCTAATT+CGG | 0.277179 | 4_1:-20677301 | None:intergenic |
| CAAAGTGGGTTCTGCATGAT+TGG | 0.295304 | 4_1:+20678507 | Msa0539590:intron |
| CAGCCATGTGTTTGAGGGTT+TGG | 0.297695 | 4_1:+20677695 | Msa0539590:CDS |
| GTTTGAGGGTTTGGAATCTT+TGG | 0.299287 | 4_1:+20677704 | Msa0539590:CDS |
| CTCAGAGAACCATTTCTTAG+AGG | 0.305502 | 4_1:-20677526 | None:intergenic |
| AACAGCAAAGAAGCTATTTC+AGG | 0.318216 | 4_1:+20678560 | Msa0539590:CDS |
| ACAACTAGAAATTAAAATTA+AGG | 0.319518 | 4_1:-20678809 | None:intergenic |
| TAAAATTAAGACATAAAATA+AGG | 0.324453 | 4_1:+20677006 | Msa0539590:five_prime_UTR |
| CCAAAGTTAGTGTCCTATAT+AGG | 0.338084 | 4_1:+20677334 | Msa0539590:CDS |
| TTCAAAGATGAGGCTAATTC+GGG | 0.358865 | 4_1:-20677300 | None:intergenic |
| GTTGATGTGGCAGGTGGAAC+TGG | 0.385377 | 4_1:+20677726 | Msa0539590:CDS |
| AAAGAAGCTATTTCAGGAAA+AGG | 0.388596 | 4_1:+20678566 | Msa0539590:CDS |
| CCACTGATGAGAAGCTTTGA+AGG | 0.393766 | 4_1:-20677435 | None:intergenic |
| AATTCTTCATCCATGTTCTC+TGG | 0.398747 | 4_1:+20677491 | Msa0539590:CDS |
| TCATAGGCTTTCCATGTTTG+TGG | 0.399025 | 4_1:-20677272 | None:intergenic |
| GCACTTTATGAAAGTGCAAC+GGG | 0.400827 | 4_1:+20677561 | Msa0539590:CDS |
| GATAAACTTAGTTTGTTTCA+AGG | 0.401061 | 4_1:+20677624 | Msa0539590:CDS |
| ACACAAAATTTGAACTTTGT+TGG | 0.405551 | 4_1:+20677837 | Msa0539590:CDS |
| GCTAATTCGGGAACAGTCAT+AGG | 0.407802 | 4_1:-20677288 | None:intergenic |
| CAGGTCGTGGCTAACTTATC+TGG | 0.411376 | 4_1:+20677813 | Msa0539590:CDS |
| AGAGACTTGAAGCCACATAT+TGG | 0.418939 | 4_1:-20678773 | None:intergenic |
| AGTTTAATCTATAAAACAAA+TGG | 0.421106 | 4_1:+20677119 | Msa0539590:exon |
| GTAATGATGACTCTGCATAA+TGG | 0.436305 | 4_1:+20678680 | Msa0539590:CDS |
| CAAAATTTGAACTTTGTTGG+TGG | 0.446259 | 4_1:+20677840 | Msa0539590:CDS |
| TGTGGCACTCCTCTAAGAAA+TGG | 0.452397 | 4_1:+20677517 | Msa0539590:CDS |
| ATAAACTTAGTTTGTTTCAA+GGG | 0.456335 | 4_1:+20677625 | Msa0539590:CDS |
| GACTGCAGCCATGTGTTTGA+GGG | 0.460568 | 4_1:+20677690 | Msa0539590:CDS |
| GCAAGCGCAAGAACCTATAT+AGG | 0.464145 | 4_1:-20677347 | None:intergenic |
| CCTATATAGGACACTAACTT+TGG | 0.465538 | 4_1:-20677334 | None:intergenic |
| GGACTGCAGCCATGTGTTTG+AGG | 0.478258 | 4_1:+20677689 | Msa0539590:CDS |
| AATGTTCAAGCTTGCTCTCA+AGG | 0.483289 | 4_1:+20677668 | Msa0539590:CDS |
| AAGAAGCTATTTCAGGAAAA+GGG | 0.484470 | 4_1:+20678567 | Msa0539590:CDS |
| AAAGTGGGTTCTGCATGATT+GGG | 0.491554 | 4_1:+20678508 | Msa0539590:intron |
| GAATCTTTGGTTGATGTGGC+AGG | 0.499173 | 4_1:+20677717 | Msa0539590:CDS |
| ATCCATGTTCTCTGGATATG+TGG | 0.500274 | 4_1:+20677499 | Msa0539590:CDS |
| CTCAAATCAGCTGTGGAACT+AGG | 0.506689 | 4_1:+20677234 | Msa0539590:CDS |
| TACAAGATTACTCCAATATG+TGG | 0.506969 | 4_1:+20678761 | Msa0539590:CDS |
| CACAGCTGATTTGAGTGCCA+TGG | 0.520024 | 4_1:-20677226 | None:intergenic |
| TATAGGACACTAACTTTGGA+AGG | 0.535127 | 4_1:-20677330 | None:intergenic |
| TTTAGATCAACCACAGGTCG+TGG | 0.535769 | 4_1:+20677800 | Msa0539590:CDS |
| GAAATGGTTCTCTGAGGAGA+AGG | 0.549990 | 4_1:+20677533 | Msa0539590:CDS |
| TGCACTTTATGAAAGTGCAA+CGG | 0.553435 | 4_1:+20677560 | Msa0539590:CDS |
| TTTGGAATCTTTGGTTGATG+TGG | 0.555368 | 4_1:+20677713 | Msa0539590:CDS |
| CAAATGGATTTCAAGAGCAA+TGG | 0.555834 | 4_1:+20677135 | Msa0539590:exon |
| TTGAGTAAAACAGCATCTGC+AGG | 0.557051 | 4_1:-20677885 | None:intergenic |
| TAAACTTAGTTTGTTTCAAG+GGG | 0.566712 | 4_1:+20677626 | Msa0539590:CDS |
| ATACAGCTTTATAAGTTCCA+TGG | 0.573273 | 4_1:+20677209 | Msa0539590:CDS |
| GTTGCAATTGCACTTTGACA+TGG | 0.578956 | 4_1:+20678658 | Msa0539590:CDS |
| CCTTCAAAGCTTCTCATCAG+TGG | 0.586184 | 4_1:+20677435 | Msa0539590:CDS |
| TGCCACATATCCAGAGAACA+TGG | 0.593078 | 4_1:-20677501 | None:intergenic |
| CATTTGTGAATCAGCTGCCA+TGG | 0.594995 | 4_1:-20677649 | None:intergenic |
| GTCAAAGTGCAATTGCAACT+CGG | 0.597693 | 4_1:-20678654 | None:intergenic |
| GATAAGTTAGCCACGACCTG+TGG | 0.598255 | 4_1:-20677810 | None:intergenic |
| TAGTTTGTTTCAAGGGGCCA+TGG | 0.599443 | 4_1:+20677632 | Msa0539590:CDS |
| AGGATGAAGTTTCAAAGATG+AGG | 0.605289 | 4_1:-20677310 | None:intergenic |
| AAAACAGTGCATTTGATGTG+AGG | 0.606781 | 4_1:-20677780 | None:intergenic |
| TCTTTGGTTGATGTGGCAGG+TGG | 0.622986 | 4_1:+20677720 | Msa0539590:CDS |
| AGTAAAACAGCATCTGCAGG+AGG | 0.624714 | 4_1:-20677882 | None:intergenic |
| GTAGATGCAATCCACAAACA+TGG | 0.627357 | 4_1:+20677261 | Msa0539590:CDS |
| CATGGCACTCAAATCAGCTG+TGG | 0.632130 | 4_1:+20677227 | Msa0539590:CDS |
| GTATATGAAGTATATAAACA+AGG | 0.639784 | 4_1:-20677078 | None:intergenic |
| ATTCCAAACCCTCAAACACA+TGG | 0.643702 | 4_1:-20677698 | None:intergenic |
| CACTTTATGAAAGTGCAACG+GGG | 0.648505 | 4_1:+20677562 | Msa0539590:CDS |
| TTGCGCTTGCTAACACACGA+TGG | 0.651331 | 4_1:+20677360 | Msa0539590:CDS |
| TGAAGAATTCCCTTAACAAG+TGG | 0.661082 | 4_1:-20677477 | None:intergenic |
| AAGAAACTCATATATGACGC+AGG | 0.661175 | 4_1:+20678728 | Msa0539590:CDS |
| CTCTAAGAAATGGTTCTCTG+AGG | 0.677453 | 4_1:+20677527 | Msa0539590:CDS |
| ACTTTATGAAAGTGCAACGG+GGG | 0.680144 | 4_1:+20677563 | Msa0539590:CDS |
| GTAAAACAGCATCTGCAGGA+GGG | 0.681270 | 4_1:-20677881 | None:intergenic |
| TTTAGGTCTCAATTAACACG+AGG | 0.687633 | 4_1:-20676987 | None:intergenic |
| CTGATGAGAAGCTTTGAAGG+AGG | 0.702373 | 4_1:-20677432 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTATGTCTTAATTTT+AGG | - | chr4_1:20677007-20677026 | None:intergenic | 10.0% |
| !! | TAAAATTAAGACATAAAATA+AGG | + | chr4_1:20677006-20677025 | Msa0539590:five_prime_UTR | 10.0% |
| !!! | AATGATGTTATTATTTTTTA+GGG | - | chr4_1:20678099-20678118 | None:intergenic | 10.0% |
| !!! | TAATGATGTTATTATTTTTT+AGG | - | chr4_1:20678100-20678119 | None:intergenic | 10.0% |
| !!! | TTATTTTATGTCTTAATTTT+AGG | - | chr4_1:20677007-20677026 | None:intergenic | 10.0% |
| !! | TAAAATTAAGACATAAAATA+AGG | + | chr4_1:20677006-20677025 | Msa0539590:five_prime_UTR | 10.0% |
| !!! | AATGATGTTATTATTTTTTA+GGG | - | chr4_1:20678099-20678118 | None:intergenic | 10.0% |
| !!! | TAATGATGTTATTATTTTTT+AGG | - | chr4_1:20678100-20678119 | None:intergenic | 10.0% |
| !! | AGTTTAATCTATAAAACAAA+TGG | + | chr4_1:20677119-20677138 | Msa0539590:exon | 15.0% |
| !! | TTTGTTAAGAAAGTTAAAAA+AGG | - | chr4_1:20677592-20677611 | None:intergenic | 15.0% |
| !! | AAGTGATAAAATAATAACAT+CGG | + | chr4_1:20678061-20678080 | Msa0539590:intron | 15.0% |
| !! | ACAACTAGAAATTAAAATTA+AGG | - | chr4_1:20678812-20678831 | None:intergenic | 15.0% |
| !! | AGTTTAATCTATAAAACAAA+TGG | + | chr4_1:20677119-20677138 | Msa0539590:exon | 15.0% |
| !! | TTTGTTAAGAAAGTTAAAAA+AGG | - | chr4_1:20677592-20677611 | None:intergenic | 15.0% |
| !! | AAGTGATAAAATAATAACAT+CGG | + | chr4_1:20678061-20678080 | Msa0539590:intron | 15.0% |
| !! | ACAACTAGAAATTAAAATTA+AGG | - | chr4_1:20678812-20678831 | None:intergenic | 15.0% |
| !!! | AAAATAAGGCAATATCTTTT+CGG | + | chr4_1:20677020-20677039 | Msa0539590:five_prime_UTR | 20.0% |
| !! | GTATATGAAGTATATAAACA+AGG | - | chr4_1:20677081-20677100 | None:intergenic | 20.0% |
| !! | TGTATACATGTTTGTATAAA+TGG | - | chr4_1:20677194-20677213 | None:intergenic | 20.0% |
| !!! | ATAAACTTAGTTTGTTTCAA+GGG | + | chr4_1:20677625-20677644 | Msa0539590:CDS | 20.0% |
| !! | CAAAATAAAATGGAATCAAA+TGG | - | chr4_1:20677937-20677956 | None:intergenic | 20.0% |
| !! | AAATCATGGACAAAATAAAA+TGG | - | chr4_1:20677947-20677966 | None:intergenic | 20.0% |
| !!! | ATCCATAAATTTTTACTTCT+GGG | + | chr4_1:20677988-20678007 | Msa0539590:intron | 20.0% |
| !!! | ATTGAGAAAATACTTTTTTG+AGG | + | chr4_1:20678122-20678141 | Msa0539590:intron | 20.0% |
| !!! | TTGAGAAAATACTTTTTTGA+GGG | + | chr4_1:20678123-20678142 | Msa0539590:intron | 20.0% |
| !!! | CATTAATTTTAATCTCTAGA+TGG | - | chr4_1:20678218-20678237 | None:intergenic | 20.0% |
| !! | AAGAAAGAGAAAAAAAAGAA+TGG | + | chr4_1:20678705-20678724 | Msa0539590:CDS | 20.0% |
| !!! | AAAATAAGGCAATATCTTTT+CGG | + | chr4_1:20677020-20677039 | Msa0539590:five_prime_UTR | 20.0% |
| !! | GTATATGAAGTATATAAACA+AGG | - | chr4_1:20677081-20677100 | None:intergenic | 20.0% |
| !! | TGTATACATGTTTGTATAAA+TGG | - | chr4_1:20677194-20677213 | None:intergenic | 20.0% |
| !!! | ATAAACTTAGTTTGTTTCAA+GGG | + | chr4_1:20677625-20677644 | Msa0539590:CDS | 20.0% |
| !! | CAAAATAAAATGGAATCAAA+TGG | - | chr4_1:20677937-20677956 | None:intergenic | 20.0% |
| !! | AAATCATGGACAAAATAAAA+TGG | - | chr4_1:20677947-20677966 | None:intergenic | 20.0% |
| !!! | ATCCATAAATTTTTACTTCT+GGG | + | chr4_1:20677988-20678007 | Msa0539590:intron | 20.0% |
| !!! | ATTGAGAAAATACTTTTTTG+AGG | + | chr4_1:20678122-20678141 | Msa0539590:intron | 20.0% |
| !!! | TTGAGAAAATACTTTTTTGA+GGG | + | chr4_1:20678123-20678142 | Msa0539590:intron | 20.0% |
| !!! | CATTAATTTTAATCTCTAGA+TGG | - | chr4_1:20678218-20678237 | None:intergenic | 20.0% |
| !! | AAGAAAGAGAAAAAAAAGAA+TGG | + | chr4_1:20678705-20678724 | Msa0539590:CDS | 20.0% |
| !!! | GATAAACTTAGTTTGTTTCA+AGG | + | chr4_1:20677624-20677643 | Msa0539590:CDS | 25.0% |
| !!! | TAAACTTAGTTTGTTTCAAG+GGG | + | chr4_1:20677626-20677645 | Msa0539590:CDS | 25.0% |
| ! | ACACAAAATTTGAACTTTGT+TGG | + | chr4_1:20677837-20677856 | Msa0539590:CDS | 25.0% |
| ! | TAATCCTGATTATGAAATCA+TGG | - | chr4_1:20677961-20677980 | None:intergenic | 25.0% |
| !! | GATCCATAAATTTTTACTTC+TGG | + | chr4_1:20677987-20678006 | Msa0539590:intron | 25.0% |
| !! | TCCATAAATTTTTACTTCTG+GGG | + | chr4_1:20677989-20678008 | Msa0539590:intron | 25.0% |
| !!! | ATCTCAAATGTTTTTCAAAG+TGG | + | chr4_1:20678492-20678511 | Msa0539590:intron | 25.0% |
| !!! | TCTCAAATGTTTTTCAAAGT+GGG | + | chr4_1:20678493-20678512 | Msa0539590:intron | 25.0% |
| !!! | GATAAACTTAGTTTGTTTCA+AGG | + | chr4_1:20677624-20677643 | Msa0539590:CDS | 25.0% |
| !!! | TAAACTTAGTTTGTTTCAAG+GGG | + | chr4_1:20677626-20677645 | Msa0539590:CDS | 25.0% |
| ! | ACACAAAATTTGAACTTTGT+TGG | + | chr4_1:20677837-20677856 | Msa0539590:CDS | 25.0% |
| ! | TAATCCTGATTATGAAATCA+TGG | - | chr4_1:20677961-20677980 | None:intergenic | 25.0% |
| !! | GATCCATAAATTTTTACTTC+TGG | + | chr4_1:20677987-20678006 | Msa0539590:intron | 25.0% |
| !! | TCCATAAATTTTTACTTCTG+GGG | + | chr4_1:20677989-20678008 | Msa0539590:intron | 25.0% |
| !!! | ATCTCAAATGTTTTTCAAAG+TGG | + | chr4_1:20678492-20678511 | Msa0539590:intron | 25.0% |
| !!! | TCTCAAATGTTTTTCAAAGT+GGG | + | chr4_1:20678493-20678512 | Msa0539590:intron | 25.0% |
| ! | ATACAGCTTTATAAGTTCCA+TGG | + | chr4_1:20677209-20677228 | Msa0539590:CDS | 30.0% |
| TTTCAAAGATGAGGCTAATT+CGG | - | chr4_1:20677304-20677323 | None:intergenic | 30.0% | |
| CAAAATTTGAACTTTGTTGG+TGG | + | chr4_1:20677840-20677859 | Msa0539590:CDS | 30.0% | |
| TTGTCCATGATTTCATAATC+AGG | + | chr4_1:20677954-20677973 | Msa0539590:intron | 30.0% | |
| ! | TTCATAATCAGGATTAGCAA+CGG | + | chr4_1:20677965-20677984 | Msa0539590:intron | 30.0% |
| ! | CCATAAATTTTTACTTCTGG+GGG | + | chr4_1:20677990-20678009 | Msa0539590:intron | 30.0% |
| GCTGTTCTTCAATATCTTTA+AGG | - | chr4_1:20678546-20678565 | None:intergenic | 30.0% | |
| ! | AAAGAAGCTATTTCAGGAAA+AGG | + | chr4_1:20678566-20678585 | Msa0539590:CDS | 30.0% |
| ! | AAGAAGCTATTTCAGGAAAA+GGG | + | chr4_1:20678567-20678586 | Msa0539590:CDS | 30.0% |
| ATTTCAGGAAAAGGGAAAAA+AGG | + | chr4_1:20678575-20678594 | Msa0539590:CDS | 30.0% | |
| TACAAGATTACTCCAATATG+TGG | + | chr4_1:20678761-20678780 | Msa0539590:CDS | 30.0% | |
| ! | ATACAGCTTTATAAGTTCCA+TGG | + | chr4_1:20677209-20677228 | Msa0539590:CDS | 30.0% |
| TTTCAAAGATGAGGCTAATT+CGG | - | chr4_1:20677304-20677323 | None:intergenic | 30.0% | |
| CAAAATTTGAACTTTGTTGG+TGG | + | chr4_1:20677840-20677859 | Msa0539590:CDS | 30.0% | |
| TTGTCCATGATTTCATAATC+AGG | + | chr4_1:20677954-20677973 | Msa0539590:intron | 30.0% | |
| ! | TTCATAATCAGGATTAGCAA+CGG | + | chr4_1:20677965-20677984 | Msa0539590:intron | 30.0% |
| ! | CCATAAATTTTTACTTCTGG+GGG | + | chr4_1:20677990-20678009 | Msa0539590:intron | 30.0% |
| GCTGTTCTTCAATATCTTTA+AGG | - | chr4_1:20678546-20678565 | None:intergenic | 30.0% | |
| ! | AAAGAAGCTATTTCAGGAAA+AGG | + | chr4_1:20678566-20678585 | Msa0539590:CDS | 30.0% |
| ! | AAGAAGCTATTTCAGGAAAA+GGG | + | chr4_1:20678567-20678586 | Msa0539590:CDS | 30.0% |
| ATTTCAGGAAAAGGGAAAAA+AGG | + | chr4_1:20678575-20678594 | Msa0539590:CDS | 30.0% | |
| TACAAGATTACTCCAATATG+TGG | + | chr4_1:20678761-20678780 | Msa0539590:CDS | 30.0% | |
| TTTAGGTCTCAATTAACACG+AGG | - | chr4_1:20676990-20677009 | None:intergenic | 35.0% | |
| ! | CAAATGGATTTCAAGAGCAA+TGG | + | chr4_1:20677135-20677154 | Msa0539590:exon | 35.0% |
| TTCAAAGATGAGGCTAATTC+GGG | - | chr4_1:20677303-20677322 | None:intergenic | 35.0% | |
| AGGATGAAGTTTCAAAGATG+AGG | - | chr4_1:20677313-20677332 | None:intergenic | 35.0% | |
| TATAGGACACTAACTTTGGA+AGG | - | chr4_1:20677333-20677352 | None:intergenic | 35.0% | |
| CCTATATAGGACACTAACTT+TGG | - | chr4_1:20677337-20677356 | None:intergenic | 35.0% | |
| CCAAAGTTAGTGTCCTATAT+AGG | + | chr4_1:20677334-20677353 | Msa0539590:CDS | 35.0% | |
| !! | TTGTTTTGCACCACTTGTTA+AGG | + | chr4_1:20677467-20677486 | Msa0539590:CDS | 35.0% |
| !! | TGTTTTGCACCACTTGTTAA+GGG | + | chr4_1:20677468-20677487 | Msa0539590:CDS | 35.0% |
| TGAAGAATTCCCTTAACAAG+TGG | - | chr4_1:20677480-20677499 | None:intergenic | 35.0% | |
| AATTCTTCATCCATGTTCTC+TGG | + | chr4_1:20677491-20677510 | Msa0539590:CDS | 35.0% | |
| ! | TGCACTTTATGAAAGTGCAA+CGG | + | chr4_1:20677560-20677579 | Msa0539590:CDS | 35.0% |
| ! | TTTGGAATCTTTGGTTGATG+TGG | + | chr4_1:20677713-20677732 | Msa0539590:CDS | 35.0% |
| AAAACAGTGCATTTGATGTG+AGG | - | chr4_1:20677783-20677802 | None:intergenic | 35.0% | |
| CCCCCAGAAGTAAAAATTTA+TGG | - | chr4_1:20677993-20678012 | None:intergenic | 35.0% | |
| ATCCACTCACATGAGATTAT+TGG | - | chr4_1:20678323-20678342 | None:intergenic | 35.0% | |
| ATTTATATCCTGATCAGGCA+CGG | - | chr4_1:20678346-20678365 | None:intergenic | 35.0% | |
| CATGGATTTATATCCTGATC+AGG | - | chr4_1:20678351-20678370 | None:intergenic | 35.0% | |
| CTTCACTCAAAACGTTATCA+TGG | - | chr4_1:20678369-20678388 | None:intergenic | 35.0% | |
| ! | AACAGCAAAGAAGCTATTTC+AGG | + | chr4_1:20678560-20678579 | Msa0539590:CDS | 35.0% |
| GTAATGATGACTCTGCATAA+TGG | + | chr4_1:20678680-20678699 | Msa0539590:CDS | 35.0% | |
| AAGAAACTCATATATGACGC+AGG | + | chr4_1:20678728-20678747 | Msa0539590:CDS | 35.0% | |
| TTTAGGTCTCAATTAACACG+AGG | - | chr4_1:20676990-20677009 | None:intergenic | 35.0% | |
| ! | CAAATGGATTTCAAGAGCAA+TGG | + | chr4_1:20677135-20677154 | Msa0539590:exon | 35.0% |
| TTCAAAGATGAGGCTAATTC+GGG | - | chr4_1:20677303-20677322 | None:intergenic | 35.0% | |
| AGGATGAAGTTTCAAAGATG+AGG | - | chr4_1:20677313-20677332 | None:intergenic | 35.0% | |
| TATAGGACACTAACTTTGGA+AGG | - | chr4_1:20677333-20677352 | None:intergenic | 35.0% | |
| CCTATATAGGACACTAACTT+TGG | - | chr4_1:20677337-20677356 | None:intergenic | 35.0% | |
| CCAAAGTTAGTGTCCTATAT+AGG | + | chr4_1:20677334-20677353 | Msa0539590:CDS | 35.0% | |
| !! | TTGTTTTGCACCACTTGTTA+AGG | + | chr4_1:20677467-20677486 | Msa0539590:CDS | 35.0% |
| !! | TGTTTTGCACCACTTGTTAA+GGG | + | chr4_1:20677468-20677487 | Msa0539590:CDS | 35.0% |
| TGAAGAATTCCCTTAACAAG+TGG | - | chr4_1:20677480-20677499 | None:intergenic | 35.0% | |
| AATTCTTCATCCATGTTCTC+TGG | + | chr4_1:20677491-20677510 | Msa0539590:CDS | 35.0% | |
| ! | TGCACTTTATGAAAGTGCAA+CGG | + | chr4_1:20677560-20677579 | Msa0539590:CDS | 35.0% |
| ! | TTTGGAATCTTTGGTTGATG+TGG | + | chr4_1:20677713-20677732 | Msa0539590:CDS | 35.0% |
| AAAACAGTGCATTTGATGTG+AGG | - | chr4_1:20677783-20677802 | None:intergenic | 35.0% | |
| CCCCCAGAAGTAAAAATTTA+TGG | - | chr4_1:20677993-20678012 | None:intergenic | 35.0% | |
| ATCCACTCACATGAGATTAT+TGG | - | chr4_1:20678323-20678342 | None:intergenic | 35.0% | |
| ATTTATATCCTGATCAGGCA+CGG | - | chr4_1:20678346-20678365 | None:intergenic | 35.0% | |
| CATGGATTTATATCCTGATC+AGG | - | chr4_1:20678351-20678370 | None:intergenic | 35.0% | |
| CTTCACTCAAAACGTTATCA+TGG | - | chr4_1:20678369-20678388 | None:intergenic | 35.0% | |
| ! | AACAGCAAAGAAGCTATTTC+AGG | + | chr4_1:20678560-20678579 | Msa0539590:CDS | 35.0% |
| GTAATGATGACTCTGCATAA+TGG | + | chr4_1:20678680-20678699 | Msa0539590:CDS | 35.0% | |
| AAGAAACTCATATATGACGC+AGG | + | chr4_1:20678728-20678747 | Msa0539590:CDS | 35.0% | |
| GTAGATGCAATCCACAAACA+TGG | + | chr4_1:20677261-20677280 | Msa0539590:CDS | 40.0% | |
| TCATAGGCTTTCCATGTTTG+TGG | - | chr4_1:20677275-20677294 | None:intergenic | 40.0% | |
| ATCCATGTTCTCTGGATATG+TGG | + | chr4_1:20677499-20677518 | Msa0539590:CDS | 40.0% | |
| CTCAGAGAACCATTTCTTAG+AGG | - | chr4_1:20677529-20677548 | None:intergenic | 40.0% | |
| ! | CTCTAAGAAATGGTTCTCTG+AGG | + | chr4_1:20677527-20677546 | Msa0539590:CDS | 40.0% |
| ! | GCACTTTATGAAAGTGCAAC+GGG | + | chr4_1:20677561-20677580 | Msa0539590:CDS | 40.0% |
| ! | CACTTTATGAAAGTGCAACG+GGG | + | chr4_1:20677562-20677581 | Msa0539590:CDS | 40.0% |
| ! | ACTTTATGAAAGTGCAACGG+GGG | + | chr4_1:20677563-20677582 | Msa0539590:CDS | 40.0% |
| ! | AATGTTCAAGCTTGCTCTCA+AGG | + | chr4_1:20677668-20677687 | Msa0539590:CDS | 40.0% |
| ATTCCAAACCCTCAAACACA+TGG | - | chr4_1:20677701-20677720 | None:intergenic | 40.0% | |
| ! | GTTTGAGGGTTTGGAATCTT+TGG | + | chr4_1:20677704-20677723 | Msa0539590:CDS | 40.0% |
| !! | CACTGTTTTAGATCAACCAC+AGG | + | chr4_1:20677794-20677813 | Msa0539590:CDS | 40.0% |
| TTGAGTAAAACAGCATCTGC+AGG | - | chr4_1:20677888-20677907 | None:intergenic | 40.0% | |
| !!! | TGCAGATGCTGTTTTACTCA+AGG | + | chr4_1:20677887-20677906 | Msa0539590:CDS | 40.0% |
| CACTCACATGAGATTATTGG+AGG | - | chr4_1:20678320-20678339 | None:intergenic | 40.0% | |
| CTCCAATAATCTCATGTGAG+TGG | + | chr4_1:20678318-20678337 | Msa0539590:intron | 40.0% | |
| ! | AAAGTGGGTTCTGCATGATT+GGG | + | chr4_1:20678508-20678527 | Msa0539590:intron | 40.0% |
| GTCAAAGTGCAATTGCAACT+CGG | - | chr4_1:20678657-20678676 | None:intergenic | 40.0% | |
| GTTGCAATTGCACTTTGACA+TGG | + | chr4_1:20678658-20678677 | Msa0539590:CDS | 40.0% | |
| AGAGACTTGAAGCCACATAT+TGG | - | chr4_1:20678776-20678795 | None:intergenic | 40.0% | |
| TTAACACGAGGTGAACTCTT+GGG | - | chr4_1:20676978-20676997 | None:intergenic | 40.0% | |
| ATTAACACGAGGTGAACTCT+TGG | - | chr4_1:20676979-20676998 | None:intergenic | 40.0% | |
| GTAGATGCAATCCACAAACA+TGG | + | chr4_1:20677261-20677280 | Msa0539590:CDS | 40.0% | |
| TCATAGGCTTTCCATGTTTG+TGG | - | chr4_1:20677275-20677294 | None:intergenic | 40.0% | |
| ATCCATGTTCTCTGGATATG+TGG | + | chr4_1:20677499-20677518 | Msa0539590:CDS | 40.0% | |
| CTCAGAGAACCATTTCTTAG+AGG | - | chr4_1:20677529-20677548 | None:intergenic | 40.0% | |
| ! | CTCTAAGAAATGGTTCTCTG+AGG | + | chr4_1:20677527-20677546 | Msa0539590:CDS | 40.0% |
| ! | GCACTTTATGAAAGTGCAAC+GGG | + | chr4_1:20677561-20677580 | Msa0539590:CDS | 40.0% |
| ! | CACTTTATGAAAGTGCAACG+GGG | + | chr4_1:20677562-20677581 | Msa0539590:CDS | 40.0% |
| ! | ACTTTATGAAAGTGCAACGG+GGG | + | chr4_1:20677563-20677582 | Msa0539590:CDS | 40.0% |
| ! | AATGTTCAAGCTTGCTCTCA+AGG | + | chr4_1:20677668-20677687 | Msa0539590:CDS | 40.0% |
| ATTCCAAACCCTCAAACACA+TGG | - | chr4_1:20677701-20677720 | None:intergenic | 40.0% | |
| ! | GTTTGAGGGTTTGGAATCTT+TGG | + | chr4_1:20677704-20677723 | Msa0539590:CDS | 40.0% |
| !! | CACTGTTTTAGATCAACCAC+AGG | + | chr4_1:20677794-20677813 | Msa0539590:CDS | 40.0% |
| TTGAGTAAAACAGCATCTGC+AGG | - | chr4_1:20677888-20677907 | None:intergenic | 40.0% | |
| !!! | TGCAGATGCTGTTTTACTCA+AGG | + | chr4_1:20677887-20677906 | Msa0539590:CDS | 40.0% |
| CACTCACATGAGATTATTGG+AGG | - | chr4_1:20678320-20678339 | None:intergenic | 40.0% | |
| CTCCAATAATCTCATGTGAG+TGG | + | chr4_1:20678318-20678337 | Msa0539590:intron | 40.0% | |
| ! | AAAGTGGGTTCTGCATGATT+GGG | + | chr4_1:20678508-20678527 | Msa0539590:intron | 40.0% |
| GTCAAAGTGCAATTGCAACT+CGG | - | chr4_1:20678657-20678676 | None:intergenic | 40.0% | |
| GTTGCAATTGCACTTTGACA+TGG | + | chr4_1:20678658-20678677 | Msa0539590:CDS | 40.0% | |
| AGAGACTTGAAGCCACATAT+TGG | - | chr4_1:20678776-20678795 | None:intergenic | 40.0% | |
| CTCAAATCAGCTGTGGAACT+AGG | + | chr4_1:20677234-20677253 | Msa0539590:CDS | 45.0% | |
| GCTAATTCGGGAACAGTCAT+AGG | - | chr4_1:20677291-20677310 | None:intergenic | 45.0% | |
| GCAAGCGCAAGAACCTATAT+AGG | - | chr4_1:20677350-20677369 | None:intergenic | 45.0% | |
| !! | CTGATGAGAAGCTTTGAAGG+AGG | - | chr4_1:20677435-20677454 | None:intergenic | 45.0% |
| ! | CCACTGATGAGAAGCTTTGA+AGG | - | chr4_1:20677438-20677457 | None:intergenic | 45.0% |
| CCTTCAAAGCTTCTCATCAG+TGG | + | chr4_1:20677435-20677454 | Msa0539590:CDS | 45.0% | |
| TGCCACATATCCAGAGAACA+TGG | - | chr4_1:20677504-20677523 | None:intergenic | 45.0% | |
| ! | TGTGGCACTCCTCTAAGAAA+TGG | + | chr4_1:20677517-20677536 | Msa0539590:CDS | 45.0% |
| ! | GAAATGGTTCTCTGAGGAGA+AGG | + | chr4_1:20677533-20677552 | Msa0539590:CDS | 45.0% |
| !! | TAGTTTGTTTCAAGGGGCCA+TGG | + | chr4_1:20677632-20677651 | Msa0539590:CDS | 45.0% |
| CATTTGTGAATCAGCTGCCA+TGG | - | chr4_1:20677652-20677671 | None:intergenic | 45.0% | |
| ! | GAATCTTTGGTTGATGTGGC+AGG | + | chr4_1:20677717-20677736 | Msa0539590:CDS | 45.0% |
| TTTAGATCAACCACAGGTCG+TGG | + | chr4_1:20677800-20677819 | Msa0539590:CDS | 45.0% | |
| GTAAAACAGCATCTGCAGGA+GGG | - | chr4_1:20677884-20677903 | None:intergenic | 45.0% | |
| AGTAAAACAGCATCTGCAGG+AGG | - | chr4_1:20677885-20677904 | None:intergenic | 45.0% | |
| ! | CAAAGTGGGTTCTGCATGAT+TGG | + | chr4_1:20678507-20678526 | Msa0539590:intron | 45.0% |
| CTCAAATCAGCTGTGGAACT+AGG | + | chr4_1:20677234-20677253 | Msa0539590:CDS | 45.0% | |
| GCTAATTCGGGAACAGTCAT+AGG | - | chr4_1:20677291-20677310 | None:intergenic | 45.0% | |
| GCAAGCGCAAGAACCTATAT+AGG | - | chr4_1:20677350-20677369 | None:intergenic | 45.0% | |
| !! | CTGATGAGAAGCTTTGAAGG+AGG | - | chr4_1:20677435-20677454 | None:intergenic | 45.0% |
| ! | CCACTGATGAGAAGCTTTGA+AGG | - | chr4_1:20677438-20677457 | None:intergenic | 45.0% |
| CCTTCAAAGCTTCTCATCAG+TGG | + | chr4_1:20677435-20677454 | Msa0539590:CDS | 45.0% | |
| TGCCACATATCCAGAGAACA+TGG | - | chr4_1:20677504-20677523 | None:intergenic | 45.0% | |
| ! | TGTGGCACTCCTCTAAGAAA+TGG | + | chr4_1:20677517-20677536 | Msa0539590:CDS | 45.0% |
| ! | GAAATGGTTCTCTGAGGAGA+AGG | + | chr4_1:20677533-20677552 | Msa0539590:CDS | 45.0% |
| !! | TAGTTTGTTTCAAGGGGCCA+TGG | + | chr4_1:20677632-20677651 | Msa0539590:CDS | 45.0% |
| CATTTGTGAATCAGCTGCCA+TGG | - | chr4_1:20677652-20677671 | None:intergenic | 45.0% | |
| ! | GAATCTTTGGTTGATGTGGC+AGG | + | chr4_1:20677717-20677736 | Msa0539590:CDS | 45.0% |
| TTTAGATCAACCACAGGTCG+TGG | + | chr4_1:20677800-20677819 | Msa0539590:CDS | 45.0% | |
| GTAAAACAGCATCTGCAGGA+GGG | - | chr4_1:20677884-20677903 | None:intergenic | 45.0% | |
| AGTAAAACAGCATCTGCAGG+AGG | - | chr4_1:20677885-20677904 | None:intergenic | 45.0% | |
| ! | CAAAGTGGGTTCTGCATGAT+TGG | + | chr4_1:20678507-20678526 | Msa0539590:intron | 45.0% |
| !! | TATATTTATAAAACAATATT+GGG | - | chr4_1:20678933-20678952 | None:intergenic | 5.0% |
| !! | TTATATTTATAAAACAATAT+TGG | - | chr4_1:20678934-20678953 | None:intergenic | 5.0% |
| !! | TATATTTATAAAACAATATT+GGG | - | chr4_1:20678933-20678952 | None:intergenic | 5.0% |
| !! | TTATATTTATAAAACAATAT+TGG | - | chr4_1:20678934-20678953 | None:intergenic | 5.0% |
| !! | CACAGCTGATTTGAGTGCCA+TGG | - | chr4_1:20677229-20677248 | None:intergenic | 50.0% |
| CATGGCACTCAAATCAGCTG+TGG | + | chr4_1:20677227-20677246 | Msa0539590:CDS | 50.0% | |
| ! | TTGCGCTTGCTAACACACGA+TGG | + | chr4_1:20677360-20677379 | Msa0539590:CDS | 50.0% |
| GACTGCAGCCATGTGTTTGA+GGG | + | chr4_1:20677690-20677709 | Msa0539590:CDS | 50.0% | |
| CAGCCATGTGTTTGAGGGTT+TGG | + | chr4_1:20677695-20677714 | Msa0539590:CDS | 50.0% | |
| ! | TCTTTGGTTGATGTGGCAGG+TGG | + | chr4_1:20677720-20677739 | Msa0539590:CDS | 50.0% |
| GATAAGTTAGCCACGACCTG+TGG | - | chr4_1:20677813-20677832 | None:intergenic | 50.0% | |
| CAGGTCGTGGCTAACTTATC+TGG | + | chr4_1:20677813-20677832 | Msa0539590:CDS | 50.0% | |
| !! | CACAGCTGATTTGAGTGCCA+TGG | - | chr4_1:20677229-20677248 | None:intergenic | 50.0% |
| CATGGCACTCAAATCAGCTG+TGG | + | chr4_1:20677227-20677246 | Msa0539590:CDS | 50.0% | |
| ! | TTGCGCTTGCTAACACACGA+TGG | + | chr4_1:20677360-20677379 | Msa0539590:CDS | 50.0% |
| GACTGCAGCCATGTGTTTGA+GGG | + | chr4_1:20677690-20677709 | Msa0539590:CDS | 50.0% | |
| CAGCCATGTGTTTGAGGGTT+TGG | + | chr4_1:20677695-20677714 | Msa0539590:CDS | 50.0% | |
| ! | TCTTTGGTTGATGTGGCAGG+TGG | + | chr4_1:20677720-20677739 | Msa0539590:CDS | 50.0% |
| GATAAGTTAGCCACGACCTG+TGG | - | chr4_1:20677813-20677832 | None:intergenic | 50.0% | |
| CAGGTCGTGGCTAACTTATC+TGG | + | chr4_1:20677813-20677832 | Msa0539590:CDS | 50.0% | |
| GGACTGCAGCCATGTGTTTG+AGG | + | chr4_1:20677689-20677708 | Msa0539590:CDS | 55.0% | |
| GTTGATGTGGCAGGTGGAAC+TGG | + | chr4_1:20677726-20677745 | Msa0539590:CDS | 55.0% | |
| GGACTGCAGCCATGTGTTTG+AGG | + | chr4_1:20677689-20677708 | Msa0539590:CDS | 55.0% | |
| GTTGATGTGGCAGGTGGAAC+TGG | + | chr4_1:20677726-20677745 | Msa0539590:CDS | 55.0% | |
| GAGTGGATCCGTGCCTGATC+AGG | + | chr4_1:20678335-20678354 | Msa0539590:intron | 60.0% | |
| GAGTGGATCCGTGCCTGATC+AGG | + | chr4_1:20678335-20678354 | Msa0539590:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 20676977 | 20678963 | 20676977 | ID=Msa0539590;Name=Msa0539590 |
| chr4_1 | mRNA | 20676977 | 20678963 | 20676977 | ID=Msa0539590-mRNA-1;Parent=Msa0539590;Name=Msa0539590-mRNA-1;_AED=0.01;_eAED=0.01;_QI=161|1|1|1|1|1|2|149|357 |
| chr4_1 | exon | 20676977 | 20677908 | 20676977 | ID=Msa0539590-mRNA-1:exon:5884;Parent=Msa0539590-mRNA-1 |
| chr4_1 | exon | 20678512 | 20678963 | 20678512 | ID=Msa0539590-mRNA-1:exon:5885;Parent=Msa0539590-mRNA-1 |
| chr4_1 | five_prime_UTR | 20676977 | 20677137 | 20676977 | ID=Msa0539590-mRNA-1:five_prime_utr;Parent=Msa0539590-mRNA-1 |
| chr4_1 | CDS | 20677138 | 20677908 | 20677138 | ID=Msa0539590-mRNA-1:cds;Parent=Msa0539590-mRNA-1 |
| chr4_1 | CDS | 20678512 | 20678814 | 20678512 | ID=Msa0539590-mRNA-1:cds;Parent=Msa0539590-mRNA-1 |
| chr4_1 | three_prime_UTR | 20678815 | 20678963 | 20678815 | ID=Msa0539590-mRNA-1:three_prime_utr;Parent=Msa0539590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
