AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0635770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0635770 MtrunA17_Chr4g0018421 98.889 90 1 0 1 90 1 90 3.12e-60 182
Msa0635770 MtrunA17_Chr7g0246431 63.291 79 28 1 1 79 1 78 1.03e-29 104
Msa0635770 MtrunA17_Chr8g0366231 60.811 74 29 0 1 74 1 74 8.71e-29 103
Msa0635770 MtrunA17_Chr4g0061671 62.162 74 28 0 1 74 1 74 1.04e-28 101
Msa0635770 MtrunA17_Chr5g0420091 54.945 91 36 1 1 86 1 91 1.12e-28 102
Msa0635770 MtrunA17_Chr3g0097101 58.140 86 34 2 1 85 16 100 3.87e-28 101
Msa0635770 MtrunA17_Chr4g0061691 61.429 70 27 0 1 70 1 70 7.87e-28 100
Msa0635770 MtrunA17_Chr3g0122251 55.814 86 37 1 1 86 1 85 2.86e-27 99.4
Msa0635770 MtrunA17_Chr7g0220111 55.172 87 35 1 1 87 1 83 3.11e-27 99.4
Msa0635770 MtrunA17_Chr5g0420081 57.534 73 31 0 1 73 1 73 9.08e-27 97.8
Msa0635770 MtrunA17_Chr2g0279821 61.111 72 27 1 1 72 1 71 9.15e-27 97.8
Msa0635770 MtrunA17_Chr8g0351041 54.118 85 38 1 1 85 1 84 9.53e-27 95.9
Msa0635770 MtrunA17_Chr6g0455511 59.211 76 31 0 1 76 1 76 1.30e-26 97.8
Msa0635770 MtrunA17_Chr8g0351051 58.750 80 32 1 1 80 1 79 2.26e-26 97.4
Msa0635770 MtrunA17_Chr5g0427921 66.102 59 20 0 1 59 1 59 4.04e-26 91.3
Msa0635770 MtrunA17_Chr4g0049541 60.274 73 28 1 1 73 1 72 4.81e-26 95.9
Msa0635770 MtrunA17_Chr3g0077501 58.333 72 29 1 1 72 1 71 5.18e-26 95.5
Msa0635770 MtrunA17_Chr8g0380021 59.722 72 28 1 1 72 17 87 5.67e-26 95.9
Msa0635770 MtrunA17_Chr7g0246381 71.186 59 17 0 1 59 1 59 7.91e-26 90.9
Msa0635770 MtrunA17_Chr2g0308251 66.102 59 20 0 1 59 1 59 1.13e-25 90.9
Msa0635770 MtrunA17_Chr8g0351031 52.941 85 39 1 1 85 1 84 1.42e-25 94.7
Msa0635770 MtrunA17_Chr5g0411691 62.857 70 25 1 1 70 1 69 2.08e-25 94.4
Msa0635770 MtrunA17_Chr6g0474371 54.321 81 36 1 1 81 1 80 4.67e-25 92.4
Msa0635770 MtrunA17_Chr8g0377561 70.690 58 17 0 1 58 1 58 5.18e-25 89.7
Msa0635770 MtrunA17_Chr7g0220121 57.143 70 30 0 1 70 1 70 6.61e-25 93.6
Msa0635770 MtrunA17_Chr2g0284911 58.333 72 29 1 1 72 16 86 6.67e-25 93.6
Msa0635770 MtrunA17_Chr4g0020221 51.220 82 39 1 1 82 1 81 1.20e-24 92.8
Msa0635770 MtrunA17_Chr4g0057151 60.000 70 27 1 1 70 1 69 2.15e-24 90.9
Msa0635770 MtrunA17_Chr1g0173161 64.407 59 21 0 1 59 1 59 2.42e-24 87.4
Msa0635770 MtrunA17_Chr5g0427401 51.685 89 36 3 1 88 1 83 3.53e-24 90.9
Msa0635770 MtrunA17_Chr1g0204111 61.429 70 26 1 1 70 17 85 2.09e-23 89.7
Msa0635770 MtrunA17_Chr1g0164791 54.667 75 33 1 1 74 1 75 3.19e-22 85.9
Msa0635770 MtrunA17_Chr5g0412271 55.714 70 30 1 1 70 1 69 5.09e-22 85.5
Msa0635770 MtrunA17_Chr5g0412461 55.714 70 30 1 1 70 1 69 5.38e-22 85.5
Msa0635770 MtrunA17_Chr4g0049901 56.522 69 29 1 1 69 27 94 8.83e-22 85.1
Msa0635770 MtrunA17_Chr3g0125241 44.706 85 46 1 1 84 26 110 1.11e-21 84.0
Msa0635770 MtrunA17_Chr3g0142191 50.704 71 34 1 1 70 1 71 1.32e-21 84.3
Msa0635770 MtrunA17_Chr5g0404951 50.685 73 35 1 1 72 1 73 4.24e-21 83.2
Msa0635770 MtrunA17_Chr1g0159661 45.333 75 40 1 1 74 1 75 2.86e-20 79.7
Msa0635770 MtrunA17_Chr3g0134451 46.575 73 39 0 1 73 1 73 2.46e-18 77.0
Msa0635770 MtrunA17_Chr4g0044071 53.333 60 28 0 1 60 1 60 7.91e-18 72.0
Msa0635770 MtrunA17_Chr1g0166611 44.737 76 42 0 13 88 17 92 1.13e-17 72.0
Msa0635770 MtrunA17_Chr5g0425191 53.333 60 28 0 1 60 1 60 3.70e-17 69.7
Msa0635770 MtrunA17_Chr8g0357771 56.364 55 24 0 1 55 1 55 7.97e-16 68.6
Msa0635770 MtrunA17_Chr8g0376821 41.667 84 46 2 1 84 1 81 1.48e-15 67.8
Msa0635770 MtrunA17_Chr1g0180591 43.836 73 40 1 1 73 1 72 3.53e-15 66.6
Msa0635770 MtrunA17_Chr2g0325971 43.478 69 38 1 3 71 10 77 5.77e-15 67.0
Msa0635770 MtrunA17_Chr1g0169761 44.444 72 39 1 1 72 1 71 7.84e-15 65.9
Msa0635770 MtrunA17_Chr1g0175611 43.836 73 40 1 1 73 1 72 1.76e-14 64.7
Msa0635770 MtrunA17_Chr4g0074101 44.444 72 39 1 1 72 1 71 1.84e-14 65.1
Msa0635770 MtrunA17_Chr4g0060841 41.333 75 43 1 1 74 1 75 6.38e-14 65.1
Msa0635770 MtrunA17_Chr4g0052081 40.845 71 41 1 1 71 1 70 6.45e-14 63.2
Msa0635770 MtrunA17_Chr3g0089141 41.429 70 40 1 2 71 9 77 6.62e-14 64.3
Msa0635770 MtrunA17_Chr1g0208561 41.429 70 40 1 2 71 9 77 6.90e-14 63.9
Msa0635770 MtrunA17_Chr4g0052061 39.474 76 45 1 1 76 1 75 7.05e-14 62.8
Msa0635770 MtrunA17_Chr5g0419601 36.905 84 51 2 1 84 8 89 2.11e-13 62.8
Msa0635770 MtrunA17_Chr2g0333981 35.632 87 55 1 1 87 11 96 2.18e-13 62.0
Msa0635770 MtrunA17_Chr1g0206991 40.000 70 41 1 2 71 9 77 2.27e-13 62.0
Msa0635770 MtrunA17_Chr2g0292791 42.029 69 39 1 3 71 10 77 2.29e-13 62.8
Msa0635770 MtrunA17_Chr3g0099421 40.580 69 40 1 3 71 35 102 2.32e-13 63.2
Msa0635770 MtrunA17_Chr1g0175601 45.902 61 33 0 1 61 1 61 2.56e-13 61.6
Msa0635770 MtrunA17_Chr5g0417661 50.943 53 26 0 1 53 56 108 2.62e-13 60.8
Msa0635770 MtrunA17_Chr1g0206701 40.000 70 41 1 2 71 9 77 3.50e-13 62.4
Msa0635770 MtrunA17_Chr8g0355091 40.000 70 41 1 2 71 9 77 3.65e-13 62.4
Msa0635770 MtrunA17_Chr3g0099411 40.000 70 41 1 2 71 9 77 7.14e-13 61.2
Msa0635770 MtrunA17_Chr2g0317451 41.429 70 40 1 2 71 9 77 8.15e-13 61.2
Msa0635770 MtrunA17_Chr1g0149391 40.580 69 40 1 3 71 10 77 8.41e-13 61.2
Msa0635770 MtrunA17_Chr2g0317481 41.429 70 40 1 2 71 9 77 8.50e-13 61.2
Msa0635770 MtrunA17_Chr1g0206721 40.000 70 41 1 2 71 9 77 8.76e-13 61.2
Msa0635770 MtrunA17_Chr8g0379021 38.889 72 43 1 3 74 13 83 9.17e-13 60.5
Msa0635770 MtrunA17_Chr1g0188671 40.000 70 41 1 2 71 47 115 1.29e-12 61.2
Msa0635770 MtrunA17_Chr1g0208581 39.130 69 41 1 3 71 10 77 1.47e-12 60.5
Msa0635770 MtrunA17_Chr3g0119901 40.845 71 41 1 1 71 8 77 1.89e-12 60.1
Msa0635770 MtrunA17_Chr8g0356071 40.278 72 42 1 1 72 1 71 2.57e-12 58.9
Msa0635770 MtrunA17_Chr1g0187361 40.000 70 41 1 2 71 9 77 2.83e-12 59.7
Msa0635770 MtrunA17_Chr4g0018951 62.500 40 15 0 16 55 26 65 4.39e-12 58.5
Msa0635770 MtrunA17_Chr3g0085241 38.272 81 47 2 1 81 40 117 4.88e-12 59.3
Msa0635770 MtrunA17_Chr5g0422941 40.000 70 41 1 2 71 9 77 6.93e-12 58.9
Msa0635770 MtrunA17_Chr5g0422421 40.000 70 41 1 2 71 9 77 7.22e-12 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0635770 AT1G71692.1 82.895 76 13 0 1 76 1 76 3.54e-42 137
Msa0635770 AT3G58780.1 59.302 86 33 2 1 85 16 100 6.05e-29 104
Msa0635770 AT3G58780.5 59.302 86 33 2 1 85 22 106 7.16e-29 103
Msa0635770 AT1G69120.2 60.811 74 29 0 1 74 1 74 7.24e-29 103
Msa0635770 AT2G45660.2 60.976 82 28 2 1 79 1 81 9.87e-29 101
Msa0635770 AT2G14210.1 62.857 70 26 0 1 70 1 70 1.00e-28 103
Msa0635770 AT2G14210.2 62.857 70 26 0 1 70 1 70 1.37e-28 102
Msa0635770 AT2G42830.2 58.140 86 34 2 1 85 16 100 1.44e-28 103
Msa0635770 AT2G42830.1 58.140 86 34 2 1 85 16 100 1.54e-28 103
Msa0635770 AT1G69120.1 60.811 74 29 0 1 74 1 74 2.20e-28 102
Msa0635770 AT5G60910.1 58.904 73 30 0 1 73 1 73 2.69e-28 102
Msa0635770 AT2G45660.1 60.976 82 28 2 1 79 1 81 4.57e-28 101
Msa0635770 AT5G62165.14 57.895 76 31 1 1 76 1 75 1.93e-27 96.3
Msa0635770 AT1G24260.3 56.977 86 36 1 1 86 1 85 2.30e-27 99.8
Msa0635770 AT1G24260.2 56.977 86 36 1 1 86 1 85 3.27e-27 99.8
Msa0635770 AT1G24260.1 56.977 86 36 1 1 86 1 85 3.31e-27 99.8
Msa0635770 AT3G02310.2 58.442 77 32 0 1 77 1 77 3.70e-27 98.6
Msa0635770 AT4G09960.2 61.111 72 27 1 1 72 1 71 4.17e-27 98.6
Msa0635770 AT4G09960.1 61.111 72 27 1 1 72 1 71 5.44e-27 98.6
Msa0635770 AT1G26310.1 55.405 74 33 0 1 74 1 74 5.49e-27 99.4
Msa0635770 AT4G09960.6 61.111 72 27 1 1 72 2 72 5.86e-27 98.6
Msa0635770 AT5G62165.17 57.895 76 31 1 1 76 1 75 5.87e-27 96.7
Msa0635770 AT5G62165.12 57.895 76 31 1 1 76 1 75 5.87e-27 96.7
Msa0635770 AT5G62165.11 57.895 76 31 1 1 76 1 75 5.87e-27 96.7
Msa0635770 AT4G09960.5 61.111 72 27 1 1 72 11 81 8.05e-27 98.6
Msa0635770 AT5G62165.6 55.696 79 34 1 1 79 1 78 1.04e-26 95.9
Msa0635770 AT5G62165.9 55.696 79 34 1 1 79 1 78 1.04e-26 95.9
Msa0635770 AT5G62165.7 55.696 79 34 1 1 79 1 78 1.04e-26 95.9
Msa0635770 AT5G62165.8 55.696 79 34 1 1 79 1 78 1.04e-26 95.9
Msa0635770 AT5G62165.13 55.696 79 34 1 1 79 1 78 1.04e-26 95.9
Msa0635770 AT5G15800.1 58.442 77 32 0 1 77 1 77 1.33e-26 98.2
Msa0635770 AT4G09960.3 61.111 72 27 1 1 72 27 97 1.40e-26 98.2
Msa0635770 AT3G58780.4 59.302 86 33 2 1 85 16 100 1.63e-26 98.6
Msa0635770 AT4G18960.1 60.563 71 27 1 2 72 18 87 1.77e-26 97.8
Msa0635770 AT5G62165.10 57.895 76 31 1 1 76 1 75 1.92e-26 96.7
Msa0635770 AT5G62165.4 57.895 76 31 1 1 76 1 75 1.92e-26 96.7
Msa0635770 AT5G15800.2 58.442 77 32 0 1 77 1 77 2.05e-26 97.8
Msa0635770 AT5G62165.3 57.895 76 31 1 1 76 1 75 2.18e-26 96.7
Msa0635770 AT5G62165.1 57.895 76 31 1 1 76 1 75 2.18e-26 96.7
Msa0635770 AT5G62165.2 57.895 76 31 1 1 76 1 75 2.18e-26 96.7
Msa0635770 AT2G03710.3 61.538 78 29 1 1 77 1 78 2.72e-26 95.9
Msa0635770 AT3G02310.1 58.442 77 32 0 1 77 1 77 2.99e-26 97.4
Msa0635770 AT3G57230.2 57.143 70 29 1 1 70 1 69 3.94e-26 94.4
Msa0635770 AT3G30260.1 58.571 70 29 0 1 70 1 70 5.06e-26 96.7
Msa0635770 AT4G11880.2 59.722 72 29 0 1 72 1 72 5.56e-26 94.7
Msa0635770 AT4G11880.3 59.722 72 29 0 1 72 1 72 5.56e-26 94.7
Msa0635770 AT2G45650.1 52.809 89 37 2 1 85 1 88 6.36e-26 96.7
Msa0635770 AT2G03710.1 61.538 78 29 1 1 77 1 78 6.41e-26 96.7
Msa0635770 AT2G03710.2 61.538 78 29 1 1 77 1 78 6.50e-26 96.7
Msa0635770 AT4G11880.4 59.722 72 29 0 1 72 1 72 1.03e-25 95.1
Msa0635770 AT4G11880.1 59.722 72 29 0 1 72 1 72 1.03e-25 95.1
Msa0635770 AT4G37940.3 56.944 72 30 1 1 72 1 71 1.68e-25 93.6
Msa0635770 AT3G58780.2 55.814 86 29 2 1 85 16 93 2.60e-25 94.7
Msa0635770 AT4G37940.4 56.944 72 30 1 1 72 1 71 3.32e-25 93.6
Msa0635770 AT3G57230.1 49.425 87 39 2 1 87 1 82 3.91e-25 94.4
Msa0635770 AT3G57230.4 49.425 87 39 2 1 87 1 82 3.91e-25 94.4
Msa0635770 AT4G37940.1 56.944 72 30 1 1 72 1 71 4.23e-25 94.0
Msa0635770 AT4G22950.2 61.429 70 26 1 1 70 1 69 2.36e-24 90.5
Msa0635770 AT3G61120.1 61.111 72 27 1 1 72 1 71 4.56e-24 91.7
Msa0635770 AT5G13790.1 60.606 66 26 0 1 66 1 66 6.92e-24 91.7
Msa0635770 AT5G13790.2 60.606 66 26 0 1 66 1 66 7.27e-24 91.7
Msa0635770 AT4G22950.3 61.429 70 26 1 1 70 1 69 1.11e-23 90.1
Msa0635770 AT4G22950.1 61.429 70 26 1 1 70 1 69 1.11e-23 90.1
Msa0635770 AT3G58780.3 63.235 68 25 0 1 68 16 83 2.07e-23 90.5
Msa0635770 AT5G51870.2 50.000 76 37 1 1 76 1 75 3.34e-23 87.4
Msa0635770 AT4G09960.4 61.111 72 27 1 1 72 96 166 6.75e-23 89.7
Msa0635770 AT5G51870.1 50.000 76 37 1 1 76 1 75 8.21e-23 87.4
Msa0635770 AT5G51870.5 50.000 76 37 1 1 76 24 98 8.87e-23 87.0
Msa0635770 AT5G23260.3 56.944 72 30 1 1 71 1 72 9.64e-23 87.8
Msa0635770 AT5G23260.2 56.944 72 30 1 1 71 1 72 1.04e-22 88.2
Msa0635770 AT5G23260.4 56.944 72 30 1 1 71 17 88 1.38e-22 88.2
Msa0635770 AT5G51860.2 52.000 75 35 1 1 75 1 74 1.38e-22 86.7
Msa0635770 AT5G23260.1 56.944 72 30 1 1 71 17 88 1.40e-22 87.8
Msa0635770 AT5G51870.4 50.000 76 37 1 1 76 1 75 1.51e-22 87.0
Msa0635770 AT5G51870.3 50.000 76 37 1 1 76 11 85 1.93e-22 87.0
Msa0635770 AT5G51860.1 52.000 75 35 1 1 75 1 74 2.29e-22 86.3
Msa0635770 AT3G57390.3 46.067 89 47 1 1 89 1 88 2.85e-22 86.3
Msa0635770 AT2G22540.3 55.714 70 30 1 1 70 1 69 2.86e-22 86.7
Msa0635770 AT2G22540.1 55.714 70 30 1 1 70 1 69 2.86e-22 86.7
Msa0635770 AT5G65070.4 48.571 70 36 0 1 70 1 70 4.59e-22 84.0
Msa0635770 AT3G57390.1 46.067 89 47 1 1 89 1 88 5.35e-22 86.3
Msa0635770 AT5G65070.1 48.571 70 36 0 1 70 1 70 1.53e-21 84.0
Msa0635770 AT2G22540.2 63.158 57 21 0 1 57 1 57 2.49e-21 84.3
Msa0635770 AT5G65070.5 48.571 70 36 0 1 70 1 70 2.77e-21 83.6
Msa0635770 AT5G65070.2 48.571 70 36 0 1 70 1 70 3.82e-21 83.6
Msa0635770 AT4G24540.1 52.857 70 32 1 1 70 1 69 6.95e-21 82.8
Msa0635770 AT3G54340.1 56.452 62 27 0 1 62 1 62 9.60e-21 82.4
Msa0635770 AT5G65050.2 48.571 70 36 0 1 70 1 70 1.17e-20 81.3
Msa0635770 AT5G10140.2 48.571 70 36 0 1 70 1 70 1.30e-20 80.9
Msa0635770 AT5G10140.3 48.571 70 36 0 1 70 1 70 1.72e-20 80.9
Msa0635770 AT5G65080.3 43.902 82 45 1 1 82 8 88 2.45e-20 80.5
Msa0635770 AT5G10140.4 48.571 70 36 0 1 70 1 70 2.51e-20 80.5
Msa0635770 AT5G10140.1 48.571 70 36 0 1 70 1 70 2.65e-20 80.5
Msa0635770 AT2G22630.1 51.429 70 33 1 1 70 1 69 3.14e-20 81.3
Msa0635770 AT2G22630.2 51.429 70 33 1 1 70 1 69 3.14e-20 81.3
Msa0635770 AT5G65060.3 50.000 70 35 0 1 70 1 70 3.64e-20 80.1
Msa0635770 AT5G65050.1 48.571 70 36 0 1 70 1 70 3.66e-20 80.1
Msa0635770 AT5G65050.3 48.571 70 36 0 1 70 1 70 3.66e-20 80.5
Msa0635770 AT5G65050.5 48.571 70 36 0 1 70 1 70 3.81e-20 80.1
Msa0635770 AT5G65060.1 50.000 70 35 0 1 70 1 70 3.86e-20 80.1
Msa0635770 AT5G65060.2 50.000 70 35 0 1 70 1 70 3.94e-20 80.1
Msa0635770 AT5G20240.2 46.667 75 39 1 1 74 1 75 1.56e-19 77.4
Msa0635770 AT5G20240.1 46.667 75 39 1 1 74 1 75 3.86e-19 77.8
Msa0635770 AT5G65070.3 54.237 59 27 0 1 59 1 59 4.49e-19 78.2
Msa0635770 AT1G31140.2 48.052 77 39 1 1 76 1 77 6.86e-18 74.7
Msa0635770 AT1G31140.1 48.052 77 39 1 1 76 1 77 6.99e-18 74.7
Msa0635770 AT5G65080.2 52.542 59 28 0 1 59 8 66 3.41e-17 72.8
Msa0635770 AT1G77980.1 41.463 82 48 0 1 82 1 82 6.63e-17 73.6
Msa0635770 AT1G22130.1 40.244 82 49 0 1 82 1 82 1.78e-16 72.4
Msa0635770 AT1G72350.1 47.887 71 34 1 2 72 43 110 1.18e-15 68.9
Msa0635770 AT1G77080.11 45.714 70 38 0 1 70 1 70 3.24e-15 67.0
Msa0635770 AT1G77080.5 45.714 70 38 0 1 70 1 70 4.70e-15 66.6
Msa0635770 AT1G77080.4 45.714 70 38 0 1 70 1 70 6.72e-15 66.6
Msa0635770 AT1G77950.3 36.585 82 52 0 1 82 1 82 1.01e-14 67.0
Msa0635770 AT1G77950.2 36.585 82 52 0 1 82 1 82 1.01e-14 67.0
Msa0635770 AT1G77950.1 36.585 82 52 0 1 82 1 82 1.01e-14 67.0
Msa0635770 AT1G77950.4 36.585 82 52 0 1 82 1 82 1.01e-14 67.0
Msa0635770 AT1G77080.8 45.714 70 38 0 1 70 1 70 1.26e-14 66.2
Msa0635770 AT2G34440.1 41.667 72 41 1 1 72 1 71 1.73e-14 65.1
Msa0635770 AT4G37435.1 43.662 71 40 0 1 71 1 71 4.05e-14 64.3
Msa0635770 AT2G03060.3 44.000 75 41 1 1 74 1 75 5.03e-14 65.9
Msa0635770 AT2G03060.7 44.000 75 41 1 1 74 1 75 5.03e-14 65.9
Msa0635770 AT2G03060.1 44.000 75 41 1 1 74 1 75 5.03e-14 65.9
Msa0635770 AT2G03060.2 44.000 75 41 1 1 74 1 75 5.07e-14 65.9
Msa0635770 AT2G24840.1 42.254 71 40 1 1 71 62 131 8.55e-14 64.7
Msa0635770 AT3G66656.1 46.552 58 31 0 1 58 1 58 8.72e-14 63.5
Msa0635770 AT1G01530.1 49.123 57 29 0 1 57 6 62 9.94e-14 64.3
Msa0635770 AT1G18750.3 41.333 75 43 1 1 74 1 75 1.08e-13 65.1
Msa0635770 AT1G77080.12 46.970 66 35 0 1 66 1 66 1.28e-13 62.4
Msa0635770 AT1G18750.4 41.333 75 43 1 1 74 1 75 1.34e-13 64.7
Msa0635770 AT1G18750.1 41.333 75 43 1 1 74 1 75 1.46e-13 64.7
Msa0635770 AT1G77080.2 46.269 67 36 0 1 67 1 67 2.57e-13 62.4
Msa0635770 AT1G69540.2 39.189 74 45 0 1 74 1 74 5.81e-13 62.8
Msa0635770 AT1G69540.1 39.189 74 45 0 1 74 1 74 7.77e-13 62.4
Msa0635770 AT4G36590.1 43.478 69 38 1 2 70 7 74 3.13e-12 60.1
Msa0635770 AT1G65360.1 43.103 58 33 0 1 58 6 63 1.19e-11 58.5
Msa0635770 AT3G04100.1 35.294 85 53 2 5 89 17 99 1.86e-11 57.8
Msa0635770 AT5G60440.1 43.860 57 32 0 2 58 7 63 2.53e-11 58.2

Find 23 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTGCTTCAGTGACAGCTTC+AGG 0.306266 4_3:+25081003 None:intergenic
GTGCTTTGCGATGCTGAAAT+TGG 0.317759 4_3:-25081629 Msa0635770:CDS
TGAAGCACGTCCTCTTGTTT+TGG 0.326747 4_3:-25080989 None:intergenic
AAAGTCACTTGCCTGTGCAC+TGG 0.436750 4_3:+25081698 None:intergenic
AAGTCACTTGCCTGTGCACT+GGG 0.471642 4_3:+25081699 None:intergenic
ACTTTCTGTAAGCGCCGAGC+GGG 0.485647 4_3:-25081680 Msa0635770:CDS
CTCTATGAACTCGCCACCAA+AGG 0.491747 4_3:-25081578 Msa0635770:CDS
CTTCTCTATTAGCCCTTGCA+TGG 0.492434 4_3:+25081053 None:intergenic
CCTTCTTCAAAAGCCCCGCT+CGG 0.520394 4_3:+25081666 None:intergenic
TTCATAGAGCTTTCCATGAG+CGG 0.532053 4_3:+25081592 None:intergenic
AATCGACATGGCTCGCGGGA+AGG 0.534307 4_3:-25081744 None:intergenic
TCTATGAACTCGCCACCAAA+GGG 0.554348 4_3:-25081577 Msa0635770:intron
GGATTGAGAACCCAGTGCAC+AGG 0.556607 4_3:-25081709 Msa0635770:CDS
ATGAAATGAAGAACCATGCA+AGG 0.564040 4_3:-25081066 Msa0635770:intron
GACAAACATACCAAAACAAG+AGG 0.564368 4_3:+25080979 None:intergenic
AAATAAGACATACCCTTTGG+TGG 0.587635 4_3:+25081565 None:intergenic
CTCGCGGGAAGGTTCAGCTA+AGG 0.601343 4_3:-25081733 Msa0635770:CDS
GCGGGAAGGTTCAGCTAAGG+AGG 0.602356 4_3:-25081730 Msa0635770:CDS
CTTTCTGTAAGCGCCGAGCG+GGG 0.616522 4_3:-25081679 Msa0635770:CDS
TGAAATGAAGAACCATGCAA+GGG 0.639061 4_3:-25081065 Msa0635770:intron
GACTTTCTGTAAGCGCCGAG+CGG 0.650769 4_3:-25081681 Msa0635770:CDS
AAGTACTTGAAGTTCACACG+AGG 0.730119 4_3:-25081033 Msa0635770:CDS
AGTACTTGAAGTTCACACGA+GGG 0.748606 4_3:-25081032 Msa0635770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTCAAATAGATTTGTT+TGG + chr4_3:25081335-25081354 None:intergenic 15.0%
!!! ATAATTCAAATAGATTTGTT+TGG + chr4_3:25081335-25081354 None:intergenic 15.0%
!! ATGTAAAATTAAGCAATGTA+CGG + chr4_3:25081387-25081406 None:intergenic 20.0%
!! ATGTAAAATTAAGCAATGTA+CGG + chr4_3:25081387-25081406 None:intergenic 20.0%
! GAAATCCAAACAAATATGTT+TGG - chr4_3:25081425-25081444 Msa0635770:intron 25.0%
! GAAATCCAAACATATTTGTT+TGG + chr4_3:25081433-25081452 None:intergenic 25.0%
! GAAATCCAAACAAATATGTT+TGG - chr4_3:25081425-25081444 Msa0635770:intron 25.0%
! GAAATCCAAACATATTTGTT+TGG + chr4_3:25081433-25081452 None:intergenic 25.0%
GAAAAATAAGACATACCCTT+TGG + chr4_3:25081168-25081187 None:intergenic 30.0%
! CTCTGTATTGCAAATTTTTG+CGG + chr4_3:25081267-25081286 None:intergenic 30.0%
GCAAAAATTTGCAATACAGA+GGG - chr4_3:25081266-25081285 Msa0635770:intron 30.0%
TTTACATATAGTTAGCGTAG+CGG - chr4_3:25081400-25081419 Msa0635770:intron 30.0%
TGCATCATACATAGTGTTAT+AGG + chr4_3:25081455-25081474 None:intergenic 30.0%
! ATTTAGAGCTCTACATTGTA+GGG - chr4_3:25081568-25081587 Msa0635770:intron 30.0%
! ATAGCCCATCAAGTTTATTT+TGG - chr4_3:25081595-25081614 Msa0635770:CDS 30.0%
GTGACCAAAATAAACTTGAT+GGG + chr4_3:25081602-25081621 None:intergenic 30.0%
AGTGACCAAAATAAACTTGA+TGG + chr4_3:25081603-25081622 None:intergenic 30.0%
GAAAAATAAGACATACCCTT+TGG + chr4_3:25081168-25081187 None:intergenic 30.0%
! CTCTGTATTGCAAATTTTTG+CGG + chr4_3:25081267-25081286 None:intergenic 30.0%
GCAAAAATTTGCAATACAGA+GGG - chr4_3:25081266-25081285 Msa0635770:intron 30.0%
TTTACATATAGTTAGCGTAG+CGG - chr4_3:25081400-25081419 Msa0635770:intron 30.0%
TGCATCATACATAGTGTTAT+AGG + chr4_3:25081455-25081474 None:intergenic 30.0%
! ATTTAGAGCTCTACATTGTA+GGG - chr4_3:25081568-25081587 Msa0635770:intron 30.0%
! ATAGCCCATCAAGTTTATTT+TGG - chr4_3:25081595-25081614 Msa0635770:CDS 30.0%
GTGACCAAAATAAACTTGAT+GGG + chr4_3:25081602-25081621 None:intergenic 30.0%
AGTGACCAAAATAAACTTGA+TGG + chr4_3:25081603-25081622 None:intergenic 30.0%
AAATAAGACATACCCTTTGG+TGG + chr4_3:25081165-25081184 None:intergenic 35.0%
TGTAGGGTTATGCAAATGAT+CGG + chr4_3:25081220-25081239 None:intergenic 35.0%
TACACACACTACATCATGTA+GGG + chr4_3:25081236-25081255 None:intergenic 35.0%
TTACACACACTACATCATGT+AGG + chr4_3:25081237-25081256 None:intergenic 35.0%
CGCAAAAATTTGCAATACAG+AGG - chr4_3:25081265-25081284 Msa0635770:intron 35.0%
CGTATCATTGTGCAAATAGA+GGG + chr4_3:25081306-25081325 None:intergenic 35.0%
ACGTATCATTGTGCAAATAG+AGG + chr4_3:25081307-25081326 None:intergenic 35.0%
!! AGCTCTAAATGCATTGAGTA+CGG + chr4_3:25081558-25081577 None:intergenic 35.0%
! CATTTAGAGCTCTACATTGT+AGG - chr4_3:25081567-25081586 Msa0635770:intron 35.0%
ATGAAATGAAGAACCATGCA+AGG - chr4_3:25081661-25081680 Msa0635770:CDS 35.0%
TGAAATGAAGAACCATGCAA+GGG - chr4_3:25081662-25081681 Msa0635770:CDS 35.0%
AAATAAGACATACCCTTTGG+TGG + chr4_3:25081165-25081184 None:intergenic 35.0%
TGTAGGGTTATGCAAATGAT+CGG + chr4_3:25081220-25081239 None:intergenic 35.0%
TACACACACTACATCATGTA+GGG + chr4_3:25081236-25081255 None:intergenic 35.0%
TTACACACACTACATCATGT+AGG + chr4_3:25081237-25081256 None:intergenic 35.0%
CGCAAAAATTTGCAATACAG+AGG - chr4_3:25081265-25081284 Msa0635770:intron 35.0%
CGTATCATTGTGCAAATAGA+GGG + chr4_3:25081306-25081325 None:intergenic 35.0%
ACGTATCATTGTGCAAATAG+AGG + chr4_3:25081307-25081326 None:intergenic 35.0%
!! AGCTCTAAATGCATTGAGTA+CGG + chr4_3:25081558-25081577 None:intergenic 35.0%
! CATTTAGAGCTCTACATTGT+AGG - chr4_3:25081567-25081586 Msa0635770:intron 35.0%
ATGAAATGAAGAACCATGCA+AGG - chr4_3:25081661-25081680 Msa0635770:CDS 35.0%
TGAAATGAAGAACCATGCAA+GGG - chr4_3:25081662-25081681 Msa0635770:CDS 35.0%
TTCATAGAGCTTTCCATGAG+CGG + chr4_3:25081138-25081157 None:intergenic 40.0%
! TTGCAAATTTTTGCGGTGCA+CGG + chr4_3:25081260-25081279 None:intergenic 40.0%
GCATATAGTGTAGACTTCAG+AGG - chr4_3:25081509-25081528 Msa0635770:intron 40.0%
! GCTCTAAATGCATTGAGTAC+GGG + chr4_3:25081557-25081576 None:intergenic 40.0%
AAGTACTTGAAGTTCACACG+AGG - chr4_3:25081694-25081713 Msa0635770:CDS 40.0%
AGTACTTGAAGTTCACACGA+GGG - chr4_3:25081695-25081714 Msa0635770:CDS 40.0%
TTCATAGAGCTTTCCATGAG+CGG + chr4_3:25081138-25081157 None:intergenic 40.0%
! TTGCAAATTTTTGCGGTGCA+CGG + chr4_3:25081260-25081279 None:intergenic 40.0%
GCATATAGTGTAGACTTCAG+AGG - chr4_3:25081509-25081528 Msa0635770:intron 40.0%
! GCTCTAAATGCATTGAGTAC+GGG + chr4_3:25081557-25081576 None:intergenic 40.0%
AAGTACTTGAAGTTCACACG+AGG - chr4_3:25081694-25081713 Msa0635770:CDS 40.0%
AGTACTTGAAGTTCACACGA+GGG - chr4_3:25081695-25081714 Msa0635770:CDS 40.0%
GTGCTTTGCGATGCTGAAAT+TGG - chr4_3:25081098-25081117 Msa0635770:intron 45.0%
!!! CTTGTCATTTTCTCCGCTCA+TGG - chr4_3:25081122-25081141 Msa0635770:intron 45.0%
TCTATGAACTCGCCACCAAA+GGG - chr4_3:25081150-25081169 Msa0635770:intron 45.0%
AGACTTCAGAGGATCTAGAG+TGG - chr4_3:25081520-25081539 Msa0635770:intron 45.0%
CTTCTCTATTAGCCCTTGCA+TGG + chr4_3:25081677-25081696 None:intergenic 45.0%
GTGCTTTGCGATGCTGAAAT+TGG - chr4_3:25081098-25081117 Msa0635770:intron 45.0%
!!! CTTGTCATTTTCTCCGCTCA+TGG - chr4_3:25081122-25081141 Msa0635770:intron 45.0%
TCTATGAACTCGCCACCAAA+GGG - chr4_3:25081150-25081169 Msa0635770:intron 45.0%
AGACTTCAGAGGATCTAGAG+TGG - chr4_3:25081520-25081539 Msa0635770:intron 45.0%
CTTCTCTATTAGCCCTTGCA+TGG + chr4_3:25081677-25081696 None:intergenic 45.0%
AAGTCACTTGCCTGTGCACT+GGG + chr4_3:25081031-25081050 None:intergenic 50.0%
AAAGTCACTTGCCTGTGCAC+TGG + chr4_3:25081032-25081051 None:intergenic 50.0%
!! GGGGCTTTTGAAGAAGGCTA+AGG - chr4_3:25081067-25081086 Msa0635770:intron 50.0%
CTCTATGAACTCGCCACCAA+AGG - chr4_3:25081149-25081168 Msa0635770:intron 50.0%
!! GCATTGAGTACGGGTTAGAG+AGG + chr4_3:25081548-25081567 None:intergenic 50.0%
AAGTCACTTGCCTGTGCACT+GGG + chr4_3:25081031-25081050 None:intergenic 50.0%
AAAGTCACTTGCCTGTGCAC+TGG + chr4_3:25081032-25081051 None:intergenic 50.0%
!! GGGGCTTTTGAAGAAGGCTA+AGG - chr4_3:25081067-25081086 Msa0635770:intron 50.0%
CTCTATGAACTCGCCACCAA+AGG - chr4_3:25081149-25081168 Msa0635770:intron 50.0%
!! GCATTGAGTACGGGTTAGAG+AGG + chr4_3:25081548-25081567 None:intergenic 50.0%
GGATTGAGAACCCAGTGCAC+AGG - chr4_3:25081018-25081037 Msa0635770:CDS 55.0%
!! GACTTTCTGTAAGCGCCGAG+CGG - chr4_3:25081046-25081065 Msa0635770:CDS 55.0%
!! ACTTTCTGTAAGCGCCGAGC+GGG - chr4_3:25081047-25081066 Msa0635770:CDS 55.0%
CCTTCTTCAAAAGCCCCGCT+CGG + chr4_3:25081064-25081083 None:intergenic 55.0%
CGTGCTTCAGTGACAGCTTC+AGG + chr4_3:25081727-25081746 None:intergenic 55.0%
GGATTGAGAACCCAGTGCAC+AGG - chr4_3:25081018-25081037 Msa0635770:CDS 55.0%
!! GACTTTCTGTAAGCGCCGAG+CGG - chr4_3:25081046-25081065 Msa0635770:CDS 55.0%
!! ACTTTCTGTAAGCGCCGAGC+GGG - chr4_3:25081047-25081066 Msa0635770:CDS 55.0%
CCTTCTTCAAAAGCCCCGCT+CGG + chr4_3:25081064-25081083 None:intergenic 55.0%
CGTGCTTCAGTGACAGCTTC+AGG + chr4_3:25081727-25081746 None:intergenic 55.0%
CTCGCGGGAAGGTTCAGCTA+AGG - chr4_3:25080994-25081013 Msa0635770:CDS 60.0%
GCGGGAAGGTTCAGCTAAGG+AGG - chr4_3:25080997-25081016 Msa0635770:CDS 60.0%
!! CTTTCTGTAAGCGCCGAGCG+GGG - chr4_3:25081048-25081067 Msa0635770:CDS 60.0%
!! CCGAGCGGGGCTTTTGAAGA+AGG - chr4_3:25081061-25081080 Msa0635770:intron 60.0%
CTCGCGGGAAGGTTCAGCTA+AGG - chr4_3:25080994-25081013 Msa0635770:CDS 60.0%
GCGGGAAGGTTCAGCTAAGG+AGG - chr4_3:25080997-25081016 Msa0635770:CDS 60.0%
!! CTTTCTGTAAGCGCCGAGCG+GGG - chr4_3:25081048-25081067 Msa0635770:CDS 60.0%
!! CCGAGCGGGGCTTTTGAAGA+AGG - chr4_3:25081061-25081080 Msa0635770:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 25080990 25081759 25080990 ID=Msa0635770;Name=Msa0635770
chr4_3 mRNA 25080990 25081759 25080990 ID=Msa0635770-mRNA-1;Parent=Msa0635770;Name=Msa0635770-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0|0|1|1|1|2|0|90
chr4_3 exon 25081578 25081759 25081578 ID=Msa0635770-mRNA-1:exon:6332;Parent=Msa0635770-mRNA-1
chr4_3 exon 25080990 25081077 25080990 ID=Msa0635770-mRNA-1:exon:6331;Parent=Msa0635770-mRNA-1
chr4_3 CDS 25081578 25081759 25081578 ID=Msa0635770-mRNA-1:cds;Parent=Msa0635770-mRNA-1
chr4_3 CDS 25080990 25081077 25080990 ID=Msa0635770-mRNA-1:cds;Parent=Msa0635770-mRNA-1
Gene Sequence

>Msa0635770

ATGGCTCGCGGGAAGGTTCAGCTAAGGAGGATTGAGAACCCAGTGCACAGGCAAGTGACTTTCTGTAAGCGCCGAGCGGGGCTTTTGAAGAAGGCTAAGGAGCTCTCTGTGCTTTGCGATGCTGAAATTGGTCTTGTCATTTTCTCCGCTCATGGAAAGCTCTATGAACTCGCCACCAAAGGAACCATGCAAGGGCTAATAGAGAAGTACTTGAAGTTCACACGAGGGACTCAACCTGAAGCTGTCACTGAAGCACGTCCTCTTGTTTTG
Protein sequence

>Msa0635770

MARGKVQLRRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLVIFSAHGKLYELATKGTMQGLIEKYLKFTRGTQPEAVTEARPLVL