AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0893220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0893220 MtrunA17_Chr8g0379581 78.355 231 35 3 1 223 1 224 1.02e-119 339
Msa0893220 MtrunA17_Chr8g0379561 59.375 224 86 2 1 219 2 225 1.91e-94 275
Msa0893220 MtrunA17_Chr6g0483141 47.143 210 100 2 5 206 3 209 7.06e-65 200
Msa0893220 MtrunA17_Chr4g0008781 44.340 212 113 2 2 208 5 216 1.44e-59 186
Msa0893220 MtrunA17_Chr7g0240681 40.991 222 123 4 2 216 4 224 1.33e-58 184
Msa0893220 MtrunA17_Chr7g0240581 44.495 218 114 5 2 213 4 220 1.92e-57 181
Msa0893220 MtrunA17_Chr3g0132581 42.534 221 122 1 1 216 1 221 2.61e-57 181
Msa0893220 MtrunA17_Chr7g0240641 39.726 219 125 4 1 213 3 220 2.81e-56 178
Msa0893220 MtrunA17_Chr7g0240561 41.096 219 122 3 1 213 3 220 8.90e-56 177
Msa0893220 MtrunA17_Chr4g0008791 40.826 218 122 4 5 216 7 223 7.70e-55 174
Msa0893220 MtrunA17_Chr7g0240631 38.288 222 130 4 1 216 3 223 3.33e-54 173
Msa0893220 MtrunA17_Chr7g0240691 38.182 220 128 4 4 216 36 254 3.49e-53 171
Msa0893220 MtrunA17_Chr1g0196771 41.935 217 118 3 4 213 2 217 3.62e-53 170
Msa0893220 MtrunA17_Chr7g0240551 40.187 214 121 3 2 209 4 216 9.15e-53 169
Msa0893220 MtrunA17_Chr1g0212301 41.860 215 117 3 5 211 3 217 2.37e-52 168
Msa0893220 MtrunA17_Chr7g0240611 39.819 221 122 4 2 216 4 219 1.25e-51 166
Msa0893220 MtrunA17_Chr7g0240541 40.187 214 121 3 2 209 4 216 1.26e-51 166
Msa0893220 MtrunA17_Chr7g0240531 39.252 214 123 3 2 209 4 216 4.66e-50 162
Msa0893220 MtrunA17_Chr7g0240511 39.726 219 120 4 2 214 4 216 7.34e-49 159
Msa0893220 MtrunA17_Chr7g0240671 41.063 207 111 4 6 206 5 206 1.01e-48 159
Msa0893220 MtrunA17_Chr7g0240521 41.818 220 120 4 2 214 11 229 1.22e-47 156
Msa0893220 MtrunA17_Chr7g0240651 38.991 218 120 5 4 214 6 217 1.14e-44 149
Msa0893220 MtrunA17_Chr5g0417011 36.866 217 126 4 3 208 5 221 1.51e-42 143
Msa0893220 MtrunA17_Chr1g0196661 37.619 210 124 2 5 207 3 212 6.57e-41 139
Msa0893220 MtrunA17_Chr7g0240661 39.713 209 115 5 4 206 6 209 1.07e-40 138
Msa0893220 MtrunA17_Chr8g0363751 36.574 216 124 4 1 203 1 216 1.64e-40 138
Msa0893220 MtrunA17_Chr2g0312771 35.747 221 128 4 3 214 2 217 3.67e-40 137
Msa0893220 MtrunA17_Chr4g0029341 37.209 215 124 4 3 208 2 214 4.88e-40 136
Msa0893220 MtrunA17_Chr2g0312751 36.239 218 125 4 3 211 2 214 1.41e-39 135
Msa0893220 MtrunA17_Chr1g0196711 36.967 211 125 4 5 208 3 212 5.25e-39 134
Msa0893220 MtrunA17_Chr5g0415411 35.160 219 127 5 1 205 1 218 3.57e-38 132
Msa0893220 MtrunA17_Chr2g0312811 33.636 220 134 4 3 213 2 218 1.09e-37 130
Msa0893220 MtrunA17_Chr2g0312791 37.438 203 118 4 3 198 2 202 1.54e-37 130
Msa0893220 MtrunA17_Chr2g0312721 34.101 217 129 4 3 210 2 213 2.05e-37 130
Msa0893220 MtrunA17_Chr1g0196721 36.715 207 124 2 6 205 3 209 6.99e-37 129
Msa0893220 MtrunA17_Chr2g0312781 35.922 206 118 4 6 202 22 222 2.12e-36 127
Msa0893220 MtrunA17_Chr1g0196691 34.928 209 128 3 5 205 28 236 1.71e-35 125
Msa0893220 MtrunA17_Chr2g0312731 33.014 209 126 4 3 202 2 205 1.77e-34 122
Msa0893220 MtrunA17_Chr3g0107731 35.176 199 121 3 5 197 9 205 3.16e-34 122
Msa0893220 MtrunA17_Chr2g0312681 33.937 221 130 6 3 213 2 216 2.33e-32 117
Msa0893220 MtrunA17_Chr5g0433801 34.722 216 131 4 3 211 4 216 2.59e-32 117
Msa0893220 MtrunA17_Chr4g0069471 40.909 176 97 3 5 173 25 200 1.50e-31 114
Msa0893220 MtrunA17_Chr8g0391631 40.881 159 81 4 1 146 17 175 2.91e-31 112
Msa0893220 MtrunA17_Chr3g0107741 33.990 203 126 3 1 197 5 205 1.40e-30 112
Msa0893220 MtrunA17_Chr8g0357241 31.628 215 139 4 3 211 2 214 1.95e-29 109
Msa0893220 MtrunA17_Chr8g0357211 36.207 174 105 3 3 170 2 175 1.52e-28 107
Msa0893220 MtrunA17_Chr2g0312691 32.883 222 133 6 3 214 2 217 2.70e-28 106
Msa0893220 MtrunA17_Chr2g0312711 33.636 220 131 5 3 213 2 215 3.03e-28 106
Msa0893220 MtrunA17_Chr4g0076681 31.098 164 94 5 8 153 18 180 3.10e-12 63.9
Msa0893220 MtrunA17_Chr2g0313561 45.455 55 29 1 51 104 9 63 9.94e-12 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0893220 AT2G29420.1 37.156 218 132 1 2 214 6 223 1.93e-52 169
Msa0893220 AT3G09270.1 39.623 212 121 3 4 208 5 216 1.57e-50 164
Msa0893220 AT2G29490.1 39.234 209 115 3 4 203 6 211 3.95e-45 150
Msa0893220 AT2G29480.1 37.198 207 118 3 4 201 6 209 2.33e-43 145
Msa0893220 AT2G29450.1 37.264 212 114 5 3 201 4 209 5.04e-43 145
Msa0893220 AT2G29460.1 38.350 206 121 2 4 203 6 211 6.06e-43 144
Msa0893220 AT1G10370.1 40.187 214 116 4 1 202 1 214 1.07e-42 144
Msa0893220 AT1G59670.1 38.679 212 117 5 4 202 5 216 1.11e-42 144
Msa0893220 AT2G29440.1 36.323 223 135 4 1 216 1 223 1.84e-41 140
Msa0893220 AT2G29470.1 38.164 207 117 4 4 201 6 210 4.18e-40 137
Msa0893220 AT1G59700.1 36.652 221 126 6 1 207 1 221 1.03e-39 136
Msa0893220 AT1G78370.1 35.211 213 124 4 8 211 7 214 1.99e-38 132
Msa0893220 AT1G78380.1 35.780 218 126 4 3 211 2 214 3.30e-38 132
Msa0893220 AT1G17170.1 36.866 217 128 5 3 213 2 215 4.12e-38 132
Msa0893220 AT1G17190.1 34.222 225 134 4 1 216 1 220 2.39e-36 127
Msa0893220 AT1G10360.1 34.545 220 120 5 1 202 1 214 5.89e-36 127
Msa0893220 AT1G78340.1 34.862 218 128 5 3 211 2 214 7.88e-36 126
Msa0893220 AT1G17180.1 33.484 221 133 4 3 214 2 217 7.68e-35 124
Msa0893220 AT1G78320.1 34.247 219 130 4 4 213 3 216 1.07e-34 123
Msa0893220 AT1G69920.1 34.300 207 119 5 6 197 35 239 5.08e-34 122
Msa0893220 AT1G53680.1 35.377 212 125 6 1 202 1 210 5.94e-33 119
Msa0893220 AT3G43800.1 35.714 210 117 8 1 197 1 205 9.92e-33 118
Msa0893220 AT5G62480.1 33.628 226 131 6 12 220 15 238 1.76e-32 118
Msa0893220 AT1G69930.1 33.175 211 130 4 6 205 13 223 5.59e-32 116
Msa0893220 AT1G74590.1 33.333 225 133 5 6 216 8 229 1.58e-31 115
Msa0893220 AT1G78360.1 33.486 218 132 5 3 211 2 215 2.28e-31 114
Msa0893220 AT1G27130.1 31.364 220 135 7 1 205 1 219 4.59e-29 108
Msa0893220 AT1G27140.1 32.547 212 128 6 1 197 1 212 7.84e-26 100
Msa0893220 AT1G78320.2 29.858 211 123 4 4 213 3 189 4.95e-24 95.1
Msa0893220 AT5G62480.3 28.311 219 125 6 12 220 15 211 4.96e-20 85.1
Msa0893220 AT5G62480.2 28.182 220 125 6 12 220 15 212 8.34e-20 84.3
Msa0893220 AT2G02390.2 40.000 95 50 1 2 89 5 99 3.31e-15 71.6
Msa0893220 AT2G02390.1 40.000 95 50 1 2 89 5 99 8.47e-15 71.2
Msa0893220 AT2G02390.3 39.216 102 48 2 2 89 5 106 3.69e-14 69.3
Msa0893220 AT2G02380.1 41.304 92 45 2 6 89 12 102 1.39e-13 67.8

Find 55 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGATAGAAGAGGAGATTA+AGG 0.148070 6_1:+76364048 Msa0893220:CDS
ATGCATTTCATGGCTGGTTT+AGG 0.191635 6_1:+76364308 Msa0893220:CDS
AAAGAGCTCTTGCTCGCTTT+TGG 0.194907 6_1:+76363386 Msa0893220:CDS
CACTTGGATGGATTTCTTAT+TGG 0.201056 6_1:+76364116 Msa0893220:CDS
GGGCGAGTCCAAATGCTATT+AGG 0.217870 6_1:+76363145 Msa0893220:CDS
CAACAAAAGCAATCTCCTTT+TGG 0.229951 6_1:+76363231 Msa0893220:CDS
TGCATTTCATGGCTGGTTTA+GGG 0.233767 6_1:+76364309 Msa0893220:CDS
ATGTGAAGTTGGTCAGCTTT+TGG 0.285798 6_1:+76363124 Msa0893220:CDS
AAAGTTCCAGTTCTTGTTCA+TGG 0.293506 6_1:+76363274 Msa0893220:intron
CACAGGGTGGTTGAGAAAAT+TGG 0.324936 6_1:-76364215 None:intergenic
GGCGAGTCCAAATGCTATTA+GGG 0.336307 6_1:+76363146 Msa0893220:CDS
ATTAAGGGGAAGAAATTCTT+TGG 0.361287 6_1:+76364064 Msa0893220:CDS
AAACAAGCATCTTGTCTCTT+GGG 0.386025 6_1:-76364255 None:intergenic
CACTCAACCCTAATAGCATT+TGG 0.388273 6_1:-76363153 None:intergenic
ATGTTTCATCAATGTATTCA+AGG 0.395354 6_1:-76363327 None:intergenic
AGCTGACCAACTTCACATCT+TGG 0.414575 6_1:-76363119 None:intergenic
TTAAGGGGAAGAAATTCTTT+GGG 0.414625 6_1:+76364065 Msa0893220:CDS
TGTCTGATGCATTTCATGGC+TGG 0.425118 6_1:+76364302 Msa0893220:CDS
TAAACAAGCATCTTGTCTCT+TGG 0.433195 6_1:-76364256 None:intergenic
AAGATAGAAGAGGAGATTAA+GGG 0.438814 6_1:+76364049 Msa0893220:CDS
ACCTTGACATTGCACTTGGA+TGG 0.446170 6_1:+76364104 Msa0893220:CDS
GCATTGTCTGATGCATTTCA+TGG 0.466793 6_1:+76364298 Msa0893220:CDS
TTACTTTCACTCTCGTAGAA+AGG 0.482693 6_1:+76364276 Msa0893220:CDS
TAAGGGGAAGAAATTCTTTG+GGG 0.491142 6_1:+76364066 Msa0893220:CDS
GGCAAGCTGTCATTGATCAC+AGG 0.503255 6_1:-76364232 None:intergenic
GTGATGGCTGAATGTTTCAA+TGG 0.509537 6_1:-76364181 None:intergenic
TGAGGATGGTGAGGCAAAAG+TGG 0.517868 6_1:-76363361 None:intergenic
GAACCGGGTTCAACTCCAAA+AGG 0.523129 6_1:-76363246 None:intergenic
AGATAGAAGAGGAGATTAAG+GGG 0.523184 6_1:+76364050 Msa0893220:CDS
AACAAGCATCTTGTCTCTTG+GGG 0.526950 6_1:-76364254 None:intergenic
CAAGAGCTCTTTGATGAGGA+TGG 0.547929 6_1:-76363375 None:intergenic
GGGAAGCCAAGATGTGAAGT+TGG 0.550319 6_1:+76363113 Msa0893220:CDS
TAGTGGGGAAGAACAAGAAA+AGG 0.553760 6_1:+76363997 Msa0893220:CDS
GGGGAAGAAATTCTTTGGGG+GGG 0.555270 6_1:+76364069 Msa0893220:CDS
GGGTGGCAATGTGTAGTAGT+GGG 0.560181 6_1:+76363981 Msa0893220:CDS
TGATGGCTGAATGTTTCAAT+GGG 0.563256 6_1:-76364180 None:intergenic
AGGGGAAGAAATTCTTTGGG+GGG 0.570087 6_1:+76364068 Msa0893220:CDS
TGGGTGGCAATGTGTAGTAG+TGG 0.580207 6_1:+76363980 Msa0893220:CDS
AGGTGTTGATTATGAGTATG+TGG 0.581611 6_1:+76363191 Msa0893220:CDS
AGCAATAGAGAAGATAGAAG+AGG 0.584428 6_1:+76364039 Msa0893220:CDS
AAATGCTATTAGGGTTGAGT+GGG 0.586891 6_1:+76363155 Msa0893220:CDS
GGGTACCTTGACATTGCACT+TGG 0.587514 6_1:+76364100 Msa0893220:CDS
CAAATGCTATTAGGGTTGAG+TGG 0.596635 6_1:+76363154 Msa0893220:CDS
AACATTCAGCCATCACTGCA+TGG 0.598710 6_1:+76364188 Msa0893220:CDS
TTGAATACATTGATGAAACA+TGG 0.606392 6_1:+76363329 Msa0893220:CDS
ATTGGTCATCCATGCAGTGA+TGG 0.606643 6_1:-76364197 None:intergenic
TCCATCCAAGTGCAATGTCA+AGG 0.611281 6_1:-76364105 None:intergenic
AAGGGGAAGAAATTCTTTGG+GGG 0.618537 6_1:+76364067 Msa0893220:CDS
GAGTGGGCCATAAAACTCAA+AGG 0.622447 6_1:+76363171 Msa0893220:CDS
CGAGCAAGAGCTCTTTGATG+AGG 0.630214 6_1:-76363379 None:intergenic
GCTCTTTGATGAGGATGGTG+AGG 0.637791 6_1:-76363370 None:intergenic
GCAAGCTGTCATTGATCACA+GGG 0.645559 6_1:-76364231 None:intergenic
ACAAGCATCTTGTCTCTTGG+GGG 0.676610 6_1:-76364253 None:intergenic
GGTGGCAATGTGTAGTAGTG+GGG 0.694384 6_1:+76363982 Msa0893220:CDS
AGCTGTCATTGATCACAGGG+TGG 0.734389 6_1:-76364228 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAAAAGGATTTTTTTAA+AGG - chr6_1:76363661-76363680 None:intergenic 10.0%
!!! TTTAAAAAAATCCTTTTTAT+TGG + chr6_1:76363660-76363679 Msa0893220:intron 10.0%
!! AAAAATTATTTCCAATAAAA+AGG - chr6_1:76363674-76363693 None:intergenic 10.0%
!!! TAAGAATTTTTTTTTTTGAA+AGG + chr6_1:76363769-76363788 Msa0893220:intron 10.0%
!!! AGTTCTTTTTTATTTTTTTA+TGG - chr6_1:76363904-76363923 None:intergenic 10.0%
!!! AATAAAAAGGATTTTTTTAA+AGG - chr6_1:76363661-76363680 None:intergenic 10.0%
!!! TTTAAAAAAATCCTTTTTAT+TGG + chr6_1:76363660-76363679 Msa0893220:intron 10.0%
!! AAAAATTATTTCCAATAAAA+AGG - chr6_1:76363674-76363693 None:intergenic 10.0%
!!! TAAGAATTTTTTTTTTTGAA+AGG + chr6_1:76363769-76363788 Msa0893220:intron 10.0%
!!! AGTTCTTTTTTATTTTTTTA+TGG - chr6_1:76363904-76363923 None:intergenic 10.0%
!!! CTTAATTTTTTTAAACCAAA+CGG - chr6_1:76363471-76363490 None:intergenic 15.0%
!!! TTTGGTTTAAAAAAATTAAG+TGG + chr6_1:76363471-76363490 Msa0893220:intron 15.0%
!! TTGGTTTAAAAAAATTAAGT+GGG + chr6_1:76363472-76363491 Msa0893220:intron 15.0%
!!! TTAAGTACCTTATTTTTTAT+CGG + chr6_1:76363693-76363712 Msa0893220:intron 15.0%
!! ATTATTTCCGATAAAAAATA+AGG - chr6_1:76363703-76363722 None:intergenic 15.0%
!! TAAAGATTCATTCATAAATA+AGG - chr6_1:76363736-76363755 None:intergenic 15.0%
!!! CTTAATTTTTTTAAACCAAA+CGG - chr6_1:76363471-76363490 None:intergenic 15.0%
!!! TTTGGTTTAAAAAAATTAAG+TGG + chr6_1:76363471-76363490 Msa0893220:intron 15.0%
!! TTGGTTTAAAAAAATTAAGT+GGG + chr6_1:76363472-76363491 Msa0893220:intron 15.0%
!!! TTAAGTACCTTATTTTTTAT+CGG + chr6_1:76363693-76363712 Msa0893220:intron 15.0%
!! ATTATTTCCGATAAAAAATA+AGG - chr6_1:76363703-76363722 None:intergenic 15.0%
!! TAAAGATTCATTCATAAATA+AGG - chr6_1:76363736-76363755 None:intergenic 15.0%
!! TTAAAAAAATTAAGTGGGAT+TGG + chr6_1:76363477-76363496 Msa0893220:intron 20.0%
!! TTAAAAAAATTAAGTGGGAT+TGG + chr6_1:76363477-76363496 Msa0893220:intron 20.0%
! ATGTTTCATCAATGTATTCA+AGG - chr6_1:76363330-76363349 None:intergenic 25.0%
! TTGAATACATTGATGAAACA+TGG + chr6_1:76363329-76363348 Msa0893220:CDS 25.0%
!!! TAAAAAAATGGTATTTTGGG+CGG - chr6_1:76363587-76363606 None:intergenic 25.0%
!! CCCTAAAAAAATGGTATTTT+GGG - chr6_1:76363590-76363609 None:intergenic 25.0%
!!! CCCAAAATACCATTTTTTTA+GGG + chr6_1:76363587-76363606 Msa0893220:intron 25.0%
!!! ATTTTAGTGCCCTAAAAAAA+TGG - chr6_1:76363599-76363618 None:intergenic 25.0%
!!! AGGACACAATTTTATTGATT+CGG + chr6_1:76363789-76363808 Msa0893220:intron 25.0%
! ATGTTTCATCAATGTATTCA+AGG - chr6_1:76363330-76363349 None:intergenic 25.0%
! TTGAATACATTGATGAAACA+TGG + chr6_1:76363329-76363348 Msa0893220:CDS 25.0%
!!! TAAAAAAATGGTATTTTGGG+CGG - chr6_1:76363587-76363606 None:intergenic 25.0%
!! CCCTAAAAAAATGGTATTTT+GGG - chr6_1:76363590-76363609 None:intergenic 25.0%
!!! CCCAAAATACCATTTTTTTA+GGG + chr6_1:76363587-76363606 Msa0893220:intron 25.0%
!!! ATTTTAGTGCCCTAAAAAAA+TGG - chr6_1:76363599-76363618 None:intergenic 25.0%
!!! AGGACACAATTTTATTGATT+CGG + chr6_1:76363789-76363808 Msa0893220:intron 25.0%
!! ATCAACACCTTTGAGTTTTA+TGG - chr6_1:76363181-76363200 None:intergenic 30.0%
!!! ACTGGAACTTTTTTATGAAC+CGG - chr6_1:76363265-76363284 None:intergenic 30.0%
AACGGATAAAGAAAAGGATT+TGG - chr6_1:76363453-76363472 None:intergenic 30.0%
! AATCCTTTTCTTTATCCGTT+TGG + chr6_1:76363453-76363472 Msa0893220:intron 30.0%
AAACCAAACGGATAAAGAAA+AGG - chr6_1:76363459-76363478 None:intergenic 30.0%
!!! GCCCAAAATACCATTTTTTT+AGG + chr6_1:76363586-76363605 Msa0893220:intron 30.0%
! GCCCTAAAAAAATGGTATTT+TGG - chr6_1:76363591-76363610 None:intergenic 30.0%
AAGATAGAAGAGGAGATTAA+GGG + chr6_1:76364049-76364068 Msa0893220:CDS 30.0%
ATTAAGGGGAAGAAATTCTT+TGG + chr6_1:76364064-76364083 Msa0893220:CDS 30.0%
TTAAGGGGAAGAAATTCTTT+GGG + chr6_1:76364065-76364084 Msa0893220:CDS 30.0%
!!! TTATTGGCTTCCTATTTTTG+AGG + chr6_1:76364132-76364151 Msa0893220:CDS 30.0%
!!! TTCCTATTTTTGAGGAAGTT+GGG + chr6_1:76364140-76364159 Msa0893220:CDS 30.0%
!! ATCAACACCTTTGAGTTTTA+TGG - chr6_1:76363181-76363200 None:intergenic 30.0%
!!! ACTGGAACTTTTTTATGAAC+CGG - chr6_1:76363265-76363284 None:intergenic 30.0%
AACGGATAAAGAAAAGGATT+TGG - chr6_1:76363453-76363472 None:intergenic 30.0%
! AATCCTTTTCTTTATCCGTT+TGG + chr6_1:76363453-76363472 Msa0893220:intron 30.0%
AAACCAAACGGATAAAGAAA+AGG - chr6_1:76363459-76363478 None:intergenic 30.0%
!!! GCCCAAAATACCATTTTTTT+AGG + chr6_1:76363586-76363605 Msa0893220:intron 30.0%
! GCCCTAAAAAAATGGTATTT+TGG - chr6_1:76363591-76363610 None:intergenic 30.0%
AAGATAGAAGAGGAGATTAA+GGG + chr6_1:76364049-76364068 Msa0893220:CDS 30.0%
ATTAAGGGGAAGAAATTCTT+TGG + chr6_1:76364064-76364083 Msa0893220:CDS 30.0%
TTAAGGGGAAGAAATTCTTT+GGG + chr6_1:76364065-76364084 Msa0893220:CDS 30.0%
!!! TTATTGGCTTCCTATTTTTG+AGG + chr6_1:76364132-76364151 Msa0893220:CDS 30.0%
!!! TTCCTATTTTTGAGGAAGTT+GGG + chr6_1:76364140-76364159 Msa0893220:CDS 30.0%
AAATGCTATTAGGGTTGAGT+GGG + chr6_1:76363155-76363174 Msa0893220:CDS 35.0%
!! AGGTGTTGATTATGAGTATG+TGG + chr6_1:76363191-76363210 Msa0893220:CDS 35.0%
! CAACAAAAGCAATCTCCTTT+TGG + chr6_1:76363231-76363250 Msa0893220:CDS 35.0%
!!! CTGGAACTTTTTTATGAACC+GGG - chr6_1:76363264-76363283 None:intergenic 35.0%
AAAGTTCCAGTTCTTGTTCA+TGG + chr6_1:76363274-76363293 Msa0893220:intron 35.0%
! GGCTAATTTTGCTGAACAAA+AGG + chr6_1:76363408-76363427 Msa0893220:CDS 35.0%
AGTGCGATACTATCATACTA+TGG - chr6_1:76363523-76363542 None:intergenic 35.0%
!!! CAATTTTATTGATTCGGCCA+AGG + chr6_1:76363795-76363814 Msa0893220:intron 35.0%
AACTCAAAAGAGACATTGAG+AGG - chr6_1:76363846-76363865 None:intergenic 35.0%
CTATGACATATGCACAACAT+AGG - chr6_1:76363945-76363964 None:intergenic 35.0%
! TGTGCATATGTCATAGCTTT+TGG + chr6_1:76363949-76363968 Msa0893220:intron 35.0%
AGCAATAGAGAAGATAGAAG+AGG + chr6_1:76364039-76364058 Msa0893220:CDS 35.0%
GAAGATAGAAGAGGAGATTA+AGG + chr6_1:76364048-76364067 Msa0893220:CDS 35.0%
AGATAGAAGAGGAGATTAAG+GGG + chr6_1:76364050-76364069 Msa0893220:CDS 35.0%
TAAGGGGAAGAAATTCTTTG+GGG + chr6_1:76364066-76364085 Msa0893220:CDS 35.0%
! CACTTGGATGGATTTCTTAT+TGG + chr6_1:76364116-76364135 Msa0893220:CDS 35.0%
!!! CTTCCTATTTTTGAGGAAGT+TGG + chr6_1:76364139-76364158 Msa0893220:CDS 35.0%
TGATGGCTGAATGTTTCAAT+GGG - chr6_1:76364183-76364202 None:intergenic 35.0%
AAACAAGCATCTTGTCTCTT+GGG - chr6_1:76364258-76364277 None:intergenic 35.0%
TAAACAAGCATCTTGTCTCT+TGG - chr6_1:76364259-76364278 None:intergenic 35.0%
TTACTTTCACTCTCGTAGAA+AGG + chr6_1:76364276-76364295 Msa0893220:CDS 35.0%
AAATGCTATTAGGGTTGAGT+GGG + chr6_1:76363155-76363174 Msa0893220:CDS 35.0%
!! AGGTGTTGATTATGAGTATG+TGG + chr6_1:76363191-76363210 Msa0893220:CDS 35.0%
! CAACAAAAGCAATCTCCTTT+TGG + chr6_1:76363231-76363250 Msa0893220:CDS 35.0%
!!! CTGGAACTTTTTTATGAACC+GGG - chr6_1:76363264-76363283 None:intergenic 35.0%
AAAGTTCCAGTTCTTGTTCA+TGG + chr6_1:76363274-76363293 Msa0893220:intron 35.0%
! GGCTAATTTTGCTGAACAAA+AGG + chr6_1:76363408-76363427 Msa0893220:CDS 35.0%
AGTGCGATACTATCATACTA+TGG - chr6_1:76363523-76363542 None:intergenic 35.0%
!!! CAATTTTATTGATTCGGCCA+AGG + chr6_1:76363795-76363814 Msa0893220:intron 35.0%
AACTCAAAAGAGACATTGAG+AGG - chr6_1:76363846-76363865 None:intergenic 35.0%
CTATGACATATGCACAACAT+AGG - chr6_1:76363945-76363964 None:intergenic 35.0%
! TGTGCATATGTCATAGCTTT+TGG + chr6_1:76363949-76363968 Msa0893220:intron 35.0%
AGCAATAGAGAAGATAGAAG+AGG + chr6_1:76364039-76364058 Msa0893220:CDS 35.0%
GAAGATAGAAGAGGAGATTA+AGG + chr6_1:76364048-76364067 Msa0893220:CDS 35.0%
AGATAGAAGAGGAGATTAAG+GGG + chr6_1:76364050-76364069 Msa0893220:CDS 35.0%
TAAGGGGAAGAAATTCTTTG+GGG + chr6_1:76364066-76364085 Msa0893220:CDS 35.0%
! CACTTGGATGGATTTCTTAT+TGG + chr6_1:76364116-76364135 Msa0893220:CDS 35.0%
!!! CTTCCTATTTTTGAGGAAGT+TGG + chr6_1:76364139-76364158 Msa0893220:CDS 35.0%
TGATGGCTGAATGTTTCAAT+GGG - chr6_1:76364183-76364202 None:intergenic 35.0%
AAACAAGCATCTTGTCTCTT+GGG - chr6_1:76364258-76364277 None:intergenic 35.0%
TAAACAAGCATCTTGTCTCT+TGG - chr6_1:76364259-76364278 None:intergenic 35.0%
TTACTTTCACTCTCGTAGAA+AGG + chr6_1:76364276-76364295 Msa0893220:CDS 35.0%
!! ATGTGAAGTTGGTCAGCTTT+TGG + chr6_1:76363124-76363143 Msa0893220:CDS 40.0%
!! TGTGAAGTTGGTCAGCTTTT+GGG + chr6_1:76363125-76363144 Msa0893220:CDS 40.0%
CACTCAACCCTAATAGCATT+TGG - chr6_1:76363156-76363175 None:intergenic 40.0%
CAAATGCTATTAGGGTTGAG+TGG + chr6_1:76363154-76363173 Msa0893220:CDS 40.0%
TTCTGACCATGAACAAGAAC+TGG - chr6_1:76363283-76363302 None:intergenic 40.0%
ATAGTATCGCACTCTCAATC+AGG + chr6_1:76363530-76363549 Msa0893220:intron 40.0%
TAGTATCGCACTCTCAATCA+GGG + chr6_1:76363531-76363550 Msa0893220:intron 40.0%
CAAAAGAGACATTGAGAGGA+GGG - chr6_1:76363842-76363861 None:intergenic 40.0%
TCAAAAGAGACATTGAGAGG+AGG - chr6_1:76363843-76363862 None:intergenic 40.0%
! ATAGCTTTTGGATGCAGCAT+GGG + chr6_1:76363961-76363980 Msa0893220:intron 40.0%
TAGTGGGGAAGAACAAGAAA+AGG + chr6_1:76363997-76364016 Msa0893220:CDS 40.0%
AAGGGGAAGAAATTCTTTGG+GGG + chr6_1:76364067-76364086 Msa0893220:CDS 40.0%
GACCCAACTTCCTCAAAAAT+AGG - chr6_1:76364145-76364164 None:intergenic 40.0%
GTGATGGCTGAATGTTTCAA+TGG - chr6_1:76364184-76364203 None:intergenic 40.0%
AACAAGCATCTTGTCTCTTG+GGG - chr6_1:76364257-76364276 None:intergenic 40.0%
GCATTGTCTGATGCATTTCA+TGG + chr6_1:76364298-76364317 Msa0893220:CDS 40.0%
!! ATGCATTTCATGGCTGGTTT+AGG + chr6_1:76364308-76364327 Msa0893220:CDS 40.0%
!! TGCATTTCATGGCTGGTTTA+GGG + chr6_1:76364309-76364328 Msa0893220:CDS 40.0%
!! ATGTGAAGTTGGTCAGCTTT+TGG + chr6_1:76363124-76363143 Msa0893220:CDS 40.0%
!! TGTGAAGTTGGTCAGCTTTT+GGG + chr6_1:76363125-76363144 Msa0893220:CDS 40.0%
CACTCAACCCTAATAGCATT+TGG - chr6_1:76363156-76363175 None:intergenic 40.0%
CAAATGCTATTAGGGTTGAG+TGG + chr6_1:76363154-76363173 Msa0893220:CDS 40.0%
TTCTGACCATGAACAAGAAC+TGG - chr6_1:76363283-76363302 None:intergenic 40.0%
ATAGTATCGCACTCTCAATC+AGG + chr6_1:76363530-76363549 Msa0893220:intron 40.0%
TAGTATCGCACTCTCAATCA+GGG + chr6_1:76363531-76363550 Msa0893220:intron 40.0%
CAAAAGAGACATTGAGAGGA+GGG - chr6_1:76363842-76363861 None:intergenic 40.0%
TCAAAAGAGACATTGAGAGG+AGG - chr6_1:76363843-76363862 None:intergenic 40.0%
! ATAGCTTTTGGATGCAGCAT+GGG + chr6_1:76363961-76363980 Msa0893220:intron 40.0%
TAGTGGGGAAGAACAAGAAA+AGG + chr6_1:76363997-76364016 Msa0893220:CDS 40.0%
AAGGGGAAGAAATTCTTTGG+GGG + chr6_1:76364067-76364086 Msa0893220:CDS 40.0%
GACCCAACTTCCTCAAAAAT+AGG - chr6_1:76364145-76364164 None:intergenic 40.0%
GTGATGGCTGAATGTTTCAA+TGG - chr6_1:76364184-76364203 None:intergenic 40.0%
AACAAGCATCTTGTCTCTTG+GGG - chr6_1:76364257-76364276 None:intergenic 40.0%
GCATTGTCTGATGCATTTCA+TGG + chr6_1:76364298-76364317 Msa0893220:CDS 40.0%
!! ATGCATTTCATGGCTGGTTT+AGG + chr6_1:76364308-76364327 Msa0893220:CDS 40.0%
!! TGCATTTCATGGCTGGTTTA+GGG + chr6_1:76364309-76364328 Msa0893220:CDS 40.0%
AGCTGACCAACTTCACATCT+TGG - chr6_1:76363122-76363141 None:intergenic 45.0%
GGCGAGTCCAAATGCTATTA+GGG + chr6_1:76363146-76363165 Msa0893220:CDS 45.0%
GAGTGGGCCATAAAACTCAA+AGG + chr6_1:76363171-76363190 Msa0893220:CDS 45.0%
!!! TCTCCTTTTGGAGTTGAACC+CGG + chr6_1:76363243-76363262 Msa0893220:CDS 45.0%
CAAGAGCTCTTTGATGAGGA+TGG - chr6_1:76363378-76363397 None:intergenic 45.0%
! AAAGAGCTCTTGCTCGCTTT+TGG + chr6_1:76363386-76363405 Msa0893220:CDS 45.0%
!! AAGAGCTCTTGCTCGCTTTT+GGG + chr6_1:76363387-76363406 Msa0893220:CDS 45.0%
AGTATCGCACTCTCAATCAG+GGG + chr6_1:76363532-76363551 Msa0893220:intron 45.0%
!!! TCCTAAGACTTTTGGTGCCT+TGG - chr6_1:76363815-76363834 None:intergenic 45.0%
! CATAGCTTTTGGATGCAGCA+TGG + chr6_1:76363960-76363979 Msa0893220:intron 45.0%
AGGGGAAGAAATTCTTTGGG+GGG + chr6_1:76364068-76364087 Msa0893220:CDS 45.0%
! TTCTTTGGGGGGGACAATAT+AGG + chr6_1:76364079-76364098 Msa0893220:CDS 45.0%
! TCTTTGGGGGGGACAATATA+GGG + chr6_1:76364080-76364099 Msa0893220:CDS 45.0%
ACCTTGACATTGCACTTGGA+TGG + chr6_1:76364104-76364123 Msa0893220:CDS 45.0%
TCCATCCAAGTGCAATGTCA+AGG - chr6_1:76364108-76364127 None:intergenic 45.0%
AACATTCAGCCATCACTGCA+TGG + chr6_1:76364188-76364207 Msa0893220:CDS 45.0%
ATTGGTCATCCATGCAGTGA+TGG - chr6_1:76364200-76364219 None:intergenic 45.0%
CACAGGGTGGTTGAGAAAAT+TGG - chr6_1:76364218-76364237 None:intergenic 45.0%
GCAAGCTGTCATTGATCACA+GGG - chr6_1:76364234-76364253 None:intergenic 45.0%
ACAAGCATCTTGTCTCTTGG+GGG - chr6_1:76364256-76364275 None:intergenic 45.0%
TGTCTGATGCATTTCATGGC+TGG + chr6_1:76364302-76364321 Msa0893220:CDS 45.0%
AGCTGACCAACTTCACATCT+TGG - chr6_1:76363122-76363141 None:intergenic 45.0%
GGCGAGTCCAAATGCTATTA+GGG + chr6_1:76363146-76363165 Msa0893220:CDS 45.0%
GAGTGGGCCATAAAACTCAA+AGG + chr6_1:76363171-76363190 Msa0893220:CDS 45.0%
!!! TCTCCTTTTGGAGTTGAACC+CGG + chr6_1:76363243-76363262 Msa0893220:CDS 45.0%
CAAGAGCTCTTTGATGAGGA+TGG - chr6_1:76363378-76363397 None:intergenic 45.0%
! AAAGAGCTCTTGCTCGCTTT+TGG + chr6_1:76363386-76363405 Msa0893220:CDS 45.0%
!! AAGAGCTCTTGCTCGCTTTT+GGG + chr6_1:76363387-76363406 Msa0893220:CDS 45.0%
AGTATCGCACTCTCAATCAG+GGG + chr6_1:76363532-76363551 Msa0893220:intron 45.0%
!!! TCCTAAGACTTTTGGTGCCT+TGG - chr6_1:76363815-76363834 None:intergenic 45.0%
! CATAGCTTTTGGATGCAGCA+TGG + chr6_1:76363960-76363979 Msa0893220:intron 45.0%
AGGGGAAGAAATTCTTTGGG+GGG + chr6_1:76364068-76364087 Msa0893220:CDS 45.0%
! TTCTTTGGGGGGGACAATAT+AGG + chr6_1:76364079-76364098 Msa0893220:CDS 45.0%
! TCTTTGGGGGGGACAATATA+GGG + chr6_1:76364080-76364099 Msa0893220:CDS 45.0%
ACCTTGACATTGCACTTGGA+TGG + chr6_1:76364104-76364123 Msa0893220:CDS 45.0%
TCCATCCAAGTGCAATGTCA+AGG - chr6_1:76364108-76364127 None:intergenic 45.0%
AACATTCAGCCATCACTGCA+TGG + chr6_1:76364188-76364207 Msa0893220:CDS 45.0%
ATTGGTCATCCATGCAGTGA+TGG - chr6_1:76364200-76364219 None:intergenic 45.0%
CACAGGGTGGTTGAGAAAAT+TGG - chr6_1:76364218-76364237 None:intergenic 45.0%
GCAAGCTGTCATTGATCACA+GGG - chr6_1:76364234-76364253 None:intergenic 45.0%
ACAAGCATCTTGTCTCTTGG+GGG - chr6_1:76364256-76364275 None:intergenic 45.0%
TGTCTGATGCATTTCATGGC+TGG + chr6_1:76364302-76364321 Msa0893220:CDS 45.0%
GGGAAGCCAAGATGTGAAGT+TGG + chr6_1:76363113-76363132 Msa0893220:CDS 50.0%
GGGCGAGTCCAAATGCTATT+AGG + chr6_1:76363145-76363164 Msa0893220:CDS 50.0%
GAACCGGGTTCAACTCCAAA+AGG - chr6_1:76363249-76363268 None:intergenic 50.0%
TGAGGATGGTGAGGCAAAAG+TGG - chr6_1:76363364-76363383 None:intergenic 50.0%
GCTCTTTGATGAGGATGGTG+AGG - chr6_1:76363373-76363392 None:intergenic 50.0%
CGAGCAAGAGCTCTTTGATG+AGG - chr6_1:76363382-76363401 None:intergenic 50.0%
! GCCAAGGCACCAAAAGTCTT+AGG + chr6_1:76363811-76363830 Msa0893220:intron 50.0%
! AGGGTCGGTCCTAAGACTTT+TGG - chr6_1:76363823-76363842 None:intergenic 50.0%
AGAGACATTGAGAGGAGGGT+CGG - chr6_1:76363838-76363857 None:intergenic 50.0%
TGGGTGGCAATGTGTAGTAG+TGG + chr6_1:76363980-76363999 Msa0893220:CDS 50.0%
GGGTGGCAATGTGTAGTAGT+GGG + chr6_1:76363981-76364000 Msa0893220:CDS 50.0%
GGTGGCAATGTGTAGTAGTG+GGG + chr6_1:76363982-76364001 Msa0893220:CDS 50.0%
! GGGGAAGAAATTCTTTGGGG+GGG + chr6_1:76364069-76364088 Msa0893220:CDS 50.0%
GGGTACCTTGACATTGCACT+TGG + chr6_1:76364100-76364119 Msa0893220:CDS 50.0%
AGCTGTCATTGATCACAGGG+TGG - chr6_1:76364231-76364250 None:intergenic 50.0%
GGCAAGCTGTCATTGATCAC+AGG - chr6_1:76364235-76364254 None:intergenic 50.0%
GGGAAGCCAAGATGTGAAGT+TGG + chr6_1:76363113-76363132 Msa0893220:CDS 50.0%
GGGCGAGTCCAAATGCTATT+AGG + chr6_1:76363145-76363164 Msa0893220:CDS 50.0%
GAACCGGGTTCAACTCCAAA+AGG - chr6_1:76363249-76363268 None:intergenic 50.0%
TGAGGATGGTGAGGCAAAAG+TGG - chr6_1:76363364-76363383 None:intergenic 50.0%
GCTCTTTGATGAGGATGGTG+AGG - chr6_1:76363373-76363392 None:intergenic 50.0%
CGAGCAAGAGCTCTTTGATG+AGG - chr6_1:76363382-76363401 None:intergenic 50.0%
! GCCAAGGCACCAAAAGTCTT+AGG + chr6_1:76363811-76363830 Msa0893220:intron 50.0%
! AGGGTCGGTCCTAAGACTTT+TGG - chr6_1:76363823-76363842 None:intergenic 50.0%
AGAGACATTGAGAGGAGGGT+CGG - chr6_1:76363838-76363857 None:intergenic 50.0%
TGGGTGGCAATGTGTAGTAG+TGG + chr6_1:76363980-76363999 Msa0893220:CDS 50.0%
GGGTGGCAATGTGTAGTAGT+GGG + chr6_1:76363981-76364000 Msa0893220:CDS 50.0%
GGTGGCAATGTGTAGTAGTG+GGG + chr6_1:76363982-76364001 Msa0893220:CDS 50.0%
! GGGGAAGAAATTCTTTGGGG+GGG + chr6_1:76364069-76364088 Msa0893220:CDS 50.0%
GGGTACCTTGACATTGCACT+TGG + chr6_1:76364100-76364119 Msa0893220:CDS 50.0%
AGCTGTCATTGATCACAGGG+TGG - chr6_1:76364231-76364250 None:intergenic 50.0%
GGCAAGCTGTCATTGATCAC+AGG - chr6_1:76364235-76364254 None:intergenic 50.0%
ATCGCACTCTCAATCAGGGG+TGG + chr6_1:76363535-76363554 Msa0893220:intron 55.0%
ATCAGGGGTGGCCATGAGTA+TGG + chr6_1:76363547-76363566 Msa0893220:intron 55.0%
TCAGGGGTGGCCATGAGTAT+GGG + chr6_1:76363548-76363567 Msa0893220:intron 55.0%
ACCTCTCCCACCCATACTCA+TGG - chr6_1:76363561-76363580 None:intergenic 55.0%
ATGAGTATGGGTGGGAGAGG+TGG + chr6_1:76363560-76363579 Msa0893220:intron 55.0%
TGAGTATGGGTGGGAGAGGT+GGG + chr6_1:76363561-76363580 Msa0893220:intron 55.0%
! GCTTTTGGATGCAGCATGGG+TGG + chr6_1:76363964-76363983 Msa0893220:intron 55.0%
ATCGCACTCTCAATCAGGGG+TGG + chr6_1:76363535-76363554 Msa0893220:intron 55.0%
ATCAGGGGTGGCCATGAGTA+TGG + chr6_1:76363547-76363566 Msa0893220:intron 55.0%
TCAGGGGTGGCCATGAGTAT+GGG + chr6_1:76363548-76363567 Msa0893220:intron 55.0%
ACCTCTCCCACCCATACTCA+TGG - chr6_1:76363561-76363580 None:intergenic 55.0%
ATGAGTATGGGTGGGAGAGG+TGG + chr6_1:76363560-76363579 Msa0893220:intron 55.0%
TGAGTATGGGTGGGAGAGGT+GGG + chr6_1:76363561-76363580 Msa0893220:intron 55.0%
! GCTTTTGGATGCAGCATGGG+TGG + chr6_1:76363964-76363983 Msa0893220:intron 55.0%
GGGTGGCCATGAGTATGGGT+GGG + chr6_1:76363552-76363571 Msa0893220:intron 60.0%
GCCATGAGTATGGGTGGGAG+AGG + chr6_1:76363557-76363576 Msa0893220:intron 60.0%
GGGTGGCCATGAGTATGGGT+GGG + chr6_1:76363552-76363571 Msa0893220:intron 60.0%
GCCATGAGTATGGGTGGGAG+AGG + chr6_1:76363557-76363576 Msa0893220:intron 60.0%
GGGGTGGCCATGAGTATGGG+TGG + chr6_1:76363551-76363570 Msa0893220:intron 65.0%
GGGGTGGCCATGAGTATGGG+TGG + chr6_1:76363551-76363570 Msa0893220:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 76363111 76364336 76363111 ID=Msa0893220;Name=Msa0893220
chr6_1 mRNA 76363111 76364336 76363111 ID=Msa0893220-mRNA-1;Parent=Msa0893220;Name=Msa0893220-mRNA-1;_AED=0.06;_eAED=0.09;_QI=0|0|0|1|0.5|0.66|3|0|223
chr6_1 exon 76363111 76363264 76363111 ID=Msa0893220-mRNA-1:exon:12779;Parent=Msa0893220-mRNA-1
chr6_1 exon 76363284 76363429 76363284 ID=Msa0893220-mRNA-1:exon:12780;Parent=Msa0893220-mRNA-1
chr6_1 exon 76363965 76364336 76363965 ID=Msa0893220-mRNA-1:exon:12781;Parent=Msa0893220-mRNA-1
chr6_1 CDS 76363111 76363264 76363111 ID=Msa0893220-mRNA-1:cds;Parent=Msa0893220-mRNA-1
chr6_1 CDS 76363284 76363429 76363284 ID=Msa0893220-mRNA-1:cds;Parent=Msa0893220-mRNA-1
chr6_1 CDS 76363965 76364336 76363965 ID=Msa0893220-mRNA-1:cds;Parent=Msa0893220-mRNA-1
Gene Sequence

>Msa0893220

ATGGGAAGCCAAGATGTGAAGTTGGTCAGCTTTTGGGCGAGTCCAAATGCTATTAGGGTTGAGTGGGCCATAAAACTCAAAGGTGTTGATTATGAGTATGTGGAAGAAGATATGTATCTTCAACAAAAGCAATCTCCTTTTGGAGTTGAACCCGTTCTTGTTCATGGTCAGAAATCAATTGCAGAGTCATTCATTATCCTTGAATACATTGATGAAACATGGAAGCAGTTTCCACTTTTGCCTCACCATCCTCATCAAAGAGCTCTTGCTCGCTTTTGGGCTAATTTTGCTGAACAAAAGCTTTTGGATGCAGCATGGGTGGCAATGTGTAGTAGTGGGGAAGAACAAGAAAAGGCTCTGAAGCTAGCAAGAGAAGCAATAGAGAAGATAGAAGAGGAGATTAAGGGGAAGAAATTCTTTGGGGGGGACAATATAGGGTACCTTGACATTGCACTTGGATGGATTTCTTATTGGCTTCCTATTTTTGAGGAAGTTGGGTCTATGCAGATAATAGACCCATTGAAACATTCAGCCATCACTGCATGGATGACCAATTTTCTCAACCACCCTGTGATCAATGACAGCTTGCCCCCAAGAGACAAGATGCTTGTTTACTTTCACTCTCGTAGAAAGGCATTGTCTGATGCATTTCATGGCTGGTTTAGGGTTTAG

Protein sequence

>Msa0893220

MGSQDVKLVSFWASPNAIRVEWAIKLKGVDYEYVEEDMYLQQKQSPFGVEPVLVHGQKSIAESFIILEYIDETWKQFPLLPHHPHQRALARFWANFAEQKLLDAAWVAMCSSGEEQEKALKLAREAIEKIEEEIKGKKFFGGDNIGYLDIALGWISYWLPIFEEVGSMQIIDPLKHSAITAWMTNFLNHPVINDSLPPRDKMLVYFHSRRKALSDAFHGWFRV*