AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0540640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0540640 MtrunA17_Chr4g0018421 97.030 202 6 0 1 202 1 202 4.65e-146 404
Msa0540640 MtrunA17_Chr7g0246431 47.337 169 87 2 1 169 1 167 2.75e-43 144
Msa0540640 MtrunA17_Chr8g0351031 43.860 171 95 1 1 171 1 170 8.47e-43 143
Msa0540640 MtrunA17_Chr8g0366231 42.614 176 86 2 1 169 1 168 7.02e-41 139
Msa0540640 MtrunA17_Chr8g0351041 43.827 162 90 1 1 162 1 161 1.10e-40 135
Msa0540640 MtrunA17_Chr3g0097101 40.201 199 109 5 1 192 16 211 1.24e-40 138
Msa0540640 MtrunA17_Chr3g0122251 44.186 172 92 2 1 169 1 171 1.94e-38 132
Msa0540640 MtrunA17_Chr7g0220111 43.860 171 90 2 1 169 1 167 2.41e-38 132
Msa0540640 MtrunA17_Chr2g0279821 43.750 176 93 3 1 173 1 173 1.11e-37 130
Msa0540640 MtrunA17_Chr8g0351051 44.509 173 88 3 1 170 1 168 5.23e-37 129
Msa0540640 MtrunA17_Chr4g0061691 40.698 172 95 2 1 169 1 168 6.22e-37 128
Msa0540640 MtrunA17_Chr5g0420081 39.785 186 97 3 1 179 1 178 6.44e-37 128
Msa0540640 MtrunA17_Chr5g0411691 41.451 193 105 3 1 189 1 189 9.63e-37 128
Msa0540640 MtrunA17_Chr6g0455511 43.275 171 91 2 1 169 1 167 1.87e-36 127
Msa0540640 MtrunA17_Chr4g0057151 43.750 176 83 5 1 169 1 167 4.36e-36 125
Msa0540640 MtrunA17_Chr4g0061671 41.243 177 93 2 1 173 1 170 5.95e-36 124
Msa0540640 MtrunA17_Chr5g0420091 40.541 185 98 3 1 180 1 178 1.47e-35 124
Msa0540640 MtrunA17_Chr2g0284911 40.341 176 101 3 1 175 16 188 3.65e-35 124
Msa0540640 MtrunA17_Chr1g0164791 36.946 203 121 3 1 196 1 203 3.77e-35 124
Msa0540640 MtrunA17_Chr3g0077501 40.237 169 93 3 1 166 1 164 9.25e-35 122
Msa0540640 MtrunA17_Chr4g0049541 42.541 181 92 4 1 175 1 175 2.09e-34 121
Msa0540640 MtrunA17_Chr8g0380021 38.122 181 110 2 1 181 17 195 4.71e-34 121
Msa0540640 MtrunA17_Chr7g0220121 38.462 169 101 1 1 169 1 166 3.57e-33 119
Msa0540640 MtrunA17_Chr6g0474371 39.655 174 95 3 1 169 1 169 5.10e-33 117
Msa0540640 MtrunA17_Chr5g0427401 40.936 171 93 4 1 169 1 165 4.73e-30 110
Msa0540640 MtrunA17_Chr1g0204111 36.813 182 106 3 1 178 17 193 2.93e-29 109
Msa0540640 MtrunA17_Chr3g0125241 38.514 148 84 2 1 147 26 167 1.31e-28 106
Msa0540640 MtrunA17_Chr5g0412461 40.351 171 96 3 1 169 1 167 1.40e-27 103
Msa0540640 MtrunA17_Chr4g0049901 36.207 174 109 2 1 173 27 199 6.62e-27 102
Msa0540640 MtrunA17_Chr5g0412271 39.766 171 97 3 1 169 1 167 2.32e-26 100
Msa0540640 MtrunA17_Chr4g0020221 38.372 172 100 4 1 169 1 169 4.01e-26 100
Msa0540640 MtrunA17_Chr3g0142191 35.057 174 105 4 1 172 1 168 5.36e-26 100
Msa0540640 MtrunA17_Chr1g0159661 37.162 148 86 2 1 147 1 142 7.10e-25 95.9
Msa0540640 MtrunA17_Chr7g0246381 71.186 59 17 0 1 59 1 59 3.37e-24 90.9
Msa0540640 MtrunA17_Chr2g0308251 66.102 59 20 0 1 59 1 59 4.89e-24 90.9
Msa0540640 MtrunA17_Chr8g0377561 70.690 58 17 0 1 58 1 58 1.60e-23 90.1
Msa0540640 MtrunA17_Chr5g0404951 33.529 170 104 4 1 166 1 165 4.15e-23 92.4
Msa0540640 MtrunA17_Chr1g0173161 64.407 59 21 0 1 59 1 59 1.96e-22 86.7
Msa0540640 MtrunA17_Chr5g0427921 66.102 59 20 0 1 59 1 59 2.85e-22 85.5
Msa0540640 MtrunA17_Chr1g0166611 42.268 97 53 1 16 109 20 116 1.22e-17 75.9
Msa0540640 MtrunA17_Chr3g0134451 46.575 73 39 0 1 73 1 73 2.45e-17 78.6
Msa0540640 MtrunA17_Chr4g0044071 53.333 60 28 0 1 60 1 60 3.66e-16 71.2
Msa0540640 MtrunA17_Chr2g0325971 28.421 190 103 5 2 170 9 186 7.64e-16 73.2
Msa0540640 MtrunA17_Chr5g0425191 53.333 60 28 0 1 60 1 60 1.42e-15 69.3
Msa0540640 MtrunA17_Chr8g0357771 56.364 55 24 0 1 55 1 55 5.76e-15 69.7
Msa0540640 MtrunA17_Chr8g0376821 41.667 84 46 2 1 84 1 81 1.43e-14 68.9
Msa0540640 MtrunA17_Chr1g0180591 43.836 73 40 1 1 73 1 72 4.72e-14 67.4
Msa0540640 MtrunA17_Chr1g0169761 44.444 72 39 1 1 72 1 71 8.68e-14 66.6
Msa0540640 MtrunA17_Chr4g0074101 44.444 72 39 1 1 72 1 71 1.97e-13 65.9
Msa0540640 MtrunA17_Chr1g0175611 43.836 73 40 1 1 73 1 72 2.05e-13 65.5
Msa0540640 MtrunA17_Chr3g0089141 30.811 185 105 7 2 170 9 186 2.44e-13 66.2
Msa0540640 MtrunA17_Chr1g0208561 30.811 185 105 7 2 170 9 186 2.44e-13 66.2
Msa0540640 MtrunA17_Chr4g0052081 33.019 106 68 2 1 106 1 103 4.00e-13 64.7
Msa0540640 MtrunA17_Chr2g0333981 31.818 110 74 1 1 110 11 119 4.64e-13 64.7
Msa0540640 MtrunA17_Chr4g0052061 33.333 111 71 3 1 109 1 110 5.37e-13 63.9
Msa0540640 MtrunA17_Chr2g0292791 26.984 189 115 6 2 170 9 194 1.18e-12 64.7
Msa0540640 MtrunA17_Chr1g0208581 29.189 185 108 7 2 170 9 186 2.05e-12 63.9
Msa0540640 MtrunA17_Chr4g0060841 41.333 75 43 1 1 74 1 75 2.63e-12 64.7
Msa0540640 MtrunA17_Chr8g0379021 38.356 73 44 1 2 74 12 83 2.88e-12 62.4
Msa0540640 MtrunA17_Chr5g0419601 36.905 84 51 2 1 84 8 89 3.33e-12 63.2
Msa0540640 MtrunA17_Chr1g0206991 40.000 70 41 1 2 71 9 77 3.67e-12 62.4
Msa0540640 MtrunA17_Chr1g0175601 45.902 61 33 0 1 61 1 61 4.60e-12 62.0
Msa0540640 MtrunA17_Chr3g0099421 40.000 70 41 1 2 71 34 102 4.98e-12 63.2
Msa0540640 MtrunA17_Chr1g0206701 40.000 70 41 1 2 71 9 77 6.26e-12 62.4
Msa0540640 MtrunA17_Chr5g0417661 50.943 53 26 0 1 53 56 108 7.70e-12 60.1
Msa0540640 MtrunA17_Chr3g0119901 34.694 98 58 3 1 98 8 99 8.93e-12 61.6
Msa0540640 MtrunA17_Chr8g0355091 40.000 70 41 1 2 71 9 77 9.42e-12 62.0
Msa0540640 MtrunA17_Chr2g0317481 41.429 70 40 1 2 71 9 77 1.04e-11 62.0
Msa0540640 MtrunA17_Chr2g0317451 41.429 70 40 1 2 71 9 77 1.05e-11 62.0
Msa0540640 MtrunA17_Chr8g0356071 40.278 72 42 1 1 72 1 71 1.15e-11 60.5
Msa0540640 MtrunA17_Chr3g0085241 37.755 98 55 4 1 98 40 131 1.35e-11 61.6
Msa0540640 MtrunA17_Chr3g0099411 40.000 70 41 1 2 71 9 77 1.41e-11 61.2
Msa0540640 MtrunA17_Chr1g0188671 40.000 70 41 1 2 71 47 115 1.81e-11 61.6
Msa0540640 MtrunA17_Chr1g0206721 40.000 70 41 1 2 71 9 77 1.91e-11 61.2
Msa0540640 MtrunA17_Chr4g0018951 29.545 132 89 3 16 147 26 153 2.00e-11 60.1
Msa0540640 MtrunA17_Chr1g0149391 40.000 70 41 1 2 71 9 77 2.15e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0540640 AT1G71692.1 59.716 211 76 3 1 202 1 211 1.08e-77 232
Msa0540640 AT2G45660.1 44.828 174 88 4 1 171 1 169 4.29e-41 139
Msa0540640 AT3G58780.1 43.750 176 95 3 1 175 16 188 1.38e-40 138
Msa0540640 AT2G42830.1 43.258 178 97 3 1 177 16 190 1.75e-40 138
Msa0540640 AT3G58780.5 43.750 176 95 3 1 175 22 194 1.81e-40 138
Msa0540640 AT1G24260.1 43.605 172 94 2 1 170 1 171 1.12e-39 136
Msa0540640 AT1G69120.2 39.665 179 107 1 1 179 1 178 1.33e-39 135
Msa0540640 AT1G24260.2 43.605 172 95 1 1 170 1 172 1.62e-39 135
Msa0540640 AT2G42830.2 43.889 180 95 4 1 177 16 192 2.86e-39 135
Msa0540640 AT1G69120.1 39.665 179 107 1 1 179 1 178 3.18e-39 135
Msa0540640 AT2G45660.2 45.342 161 80 4 1 158 1 156 4.40e-39 132
Msa0540640 AT4G09960.1 42.045 176 98 3 1 175 1 173 2.37e-38 132
Msa0540640 AT4G09960.6 42.045 176 98 3 1 175 2 174 2.71e-38 132
Msa0540640 AT4G09960.5 42.045 176 98 3 1 175 11 183 3.42e-38 132
Msa0540640 AT4G09960.3 42.045 176 98 3 1 175 27 199 7.40e-38 132
Msa0540640 AT5G60910.1 40.698 172 95 2 1 169 1 168 1.55e-37 130
Msa0540640 AT1G24260.3 43.750 160 88 1 1 158 1 160 2.06e-37 130
Msa0540640 AT2G45650.1 43.931 173 86 3 1 169 1 166 2.06e-37 130
Msa0540640 AT1G26310.1 37.158 183 108 2 1 179 1 180 2.40e-37 130
Msa0540640 AT3G58780.2 42.045 176 91 3 1 175 16 181 6.53e-37 129
Msa0540640 AT4G18960.1 40.909 176 100 3 2 176 18 190 8.69e-37 129
Msa0540640 AT4G09960.2 40.805 174 99 3 1 173 1 171 2.01e-36 127
Msa0540640 AT3G58780.3 38.500 200 96 3 1 175 16 213 2.06e-36 128
Msa0540640 AT4G37940.1 40.964 166 95 3 1 166 1 163 3.00e-36 127
Msa0540640 AT3G58780.4 47.260 146 73 3 1 145 16 158 4.27e-36 128
Msa0540640 AT2G03710.3 43.529 170 93 3 1 169 1 168 2.89e-35 123
Msa0540640 AT4G22950.2 40.571 175 97 3 1 173 1 170 4.23e-35 122
Msa0540640 AT3G02310.2 43.195 169 95 1 1 169 1 168 4.49e-35 123
Msa0540640 AT5G15800.1 43.195 169 95 1 1 169 1 168 4.52e-35 124
Msa0540640 AT5G15800.2 43.195 169 95 1 1 169 1 168 6.13e-35 124
Msa0540640 AT4G09960.4 41.111 180 98 4 1 175 96 272 1.71e-34 125
Msa0540640 AT2G03710.1 43.529 170 93 3 1 169 1 168 1.71e-34 123
Msa0540640 AT2G03710.2 43.529 170 93 3 1 169 1 168 1.84e-34 123
Msa0540640 AT4G37940.4 42.384 151 84 3 1 151 1 148 1.97e-34 122
Msa0540640 AT5G62165.3 38.824 170 102 2 1 170 1 168 2.82e-34 121
Msa0540640 AT5G62165.1 38.824 170 102 2 1 170 1 168 2.82e-34 121
Msa0540640 AT5G62165.2 38.824 170 102 2 1 170 1 168 2.82e-34 121
Msa0540640 AT3G57230.1 40.854 164 89 4 1 162 1 158 2.85e-34 122
Msa0540640 AT3G57230.4 40.854 164 89 4 1 162 1 158 2.85e-34 122
Msa0540640 AT3G02310.1 43.195 169 95 1 1 169 1 168 3.33e-34 122
Msa0540640 AT4G11880.2 40.625 160 89 2 1 158 1 156 4.09e-34 120
Msa0540640 AT4G11880.3 40.625 160 89 2 1 158 1 156 4.09e-34 120
Msa0540640 AT4G22950.3 40.110 182 102 3 1 180 1 177 5.96e-34 120
Msa0540640 AT4G22950.1 40.110 182 102 3 1 180 1 177 5.96e-34 120
Msa0540640 AT5G13790.2 37.681 207 114 5 1 198 1 201 9.08e-34 121
Msa0540640 AT5G62165.17 38.608 158 95 2 1 158 1 156 8.86e-33 115
Msa0540640 AT5G62165.12 38.608 158 95 2 1 158 1 156 8.86e-33 115
Msa0540640 AT5G62165.11 38.608 158 95 2 1 158 1 156 8.86e-33 115
Msa0540640 AT2G14210.1 40.556 180 91 2 1 173 1 171 9.56e-33 118
Msa0540640 AT2G14210.2 40.556 180 91 2 1 173 1 171 1.10e-32 117
Msa0540640 AT5G13790.1 36.232 207 114 4 1 198 1 198 1.15e-32 119
Msa0540640 AT4G37940.3 41.611 149 84 3 1 149 1 146 1.70e-32 115
Msa0540640 AT5G23260.2 36.842 190 115 2 1 189 1 186 2.91e-32 117
Msa0540640 AT5G62165.6 40.541 148 86 2 1 148 1 146 3.09e-32 114
Msa0540640 AT5G62165.9 40.541 148 86 2 1 148 1 146 3.09e-32 114
Msa0540640 AT5G62165.7 40.541 148 86 2 1 148 1 146 3.09e-32 114
Msa0540640 AT5G62165.8 40.541 148 86 2 1 148 1 146 3.09e-32 114
Msa0540640 AT5G62165.13 40.541 148 86 2 1 148 1 146 3.09e-32 114
Msa0540640 AT3G61120.1 42.045 176 84 3 1 169 1 165 3.18e-32 117
Msa0540640 AT5G23260.4 36.842 190 115 2 1 189 17 202 4.45e-32 117
Msa0540640 AT4G11880.4 41.520 171 94 2 1 169 1 167 5.85e-32 115
Msa0540640 AT4G11880.1 41.520 171 94 2 1 169 1 167 5.85e-32 115
Msa0540640 AT3G57230.2 40.816 147 80 3 1 145 1 142 8.07e-32 113
Msa0540640 AT3G30260.1 39.744 156 85 2 1 152 1 151 8.49e-32 115
Msa0540640 AT5G51870.1 36.686 169 106 1 1 169 1 168 2.92e-31 113
Msa0540640 AT5G51870.4 36.686 169 106 1 1 169 1 168 4.25e-31 113
Msa0540640 AT5G51870.3 36.686 169 106 1 1 169 11 178 8.41e-31 112
Msa0540640 AT5G62165.10 40.972 144 83 2 1 144 1 142 2.17e-30 110
Msa0540640 AT5G62165.4 40.972 144 83 2 1 144 1 142 2.17e-30 110
Msa0540640 AT5G51870.2 37.838 148 91 1 1 148 1 147 3.96e-29 107
Msa0540640 AT5G23260.1 36.316 190 111 3 1 189 17 197 5.44e-29 108
Msa0540640 AT5G51860.2 37.952 166 96 3 1 163 1 162 8.83e-29 107
Msa0540640 AT5G51870.5 37.086 151 94 1 1 151 24 173 9.09e-29 106
Msa0540640 AT5G51860.1 37.952 166 96 3 1 163 1 162 9.68e-29 107
Msa0540640 AT2G22630.1 37.209 172 93 3 1 166 1 163 1.33e-28 107
Msa0540640 AT2G22630.2 37.209 172 93 3 1 166 1 163 1.33e-28 107
Msa0540640 AT5G23260.3 39.474 152 87 2 1 151 1 148 1.12e-27 105
Msa0540640 AT3G57390.3 35.754 179 108 2 1 173 1 178 1.17e-26 102
Msa0540640 AT3G57390.1 35.754 179 108 2 1 173 1 178 2.56e-26 102
Msa0540640 AT2G22540.3 38.728 173 96 3 1 169 1 167 1.27e-25 99.8
Msa0540640 AT2G22540.1 38.728 173 96 3 1 169 1 167 1.27e-25 99.8
Msa0540640 AT4G24540.1 37.321 209 110 6 1 193 1 204 1.32e-25 99.4
Msa0540640 AT5G62165.14 58.667 75 30 1 1 75 1 74 1.41e-25 95.9
Msa0540640 AT2G22540.2 39.645 169 95 2 1 169 1 162 3.29e-24 95.9
Msa0540640 AT5G20240.1 36.242 149 88 2 1 148 1 143 3.99e-24 95.1
Msa0540640 AT5G20240.2 35.135 148 89 2 1 147 1 142 1.02e-23 92.4
Msa0540640 AT5G65070.1 34.104 173 97 5 1 169 1 160 1.07e-23 93.6
Msa0540640 AT5G65050.2 34.091 176 101 4 1 173 1 164 1.47e-23 92.8
Msa0540640 AT5G65060.3 31.795 195 116 5 1 193 1 180 5.93e-23 91.7
Msa0540640 AT3G54340.1 32.367 207 114 6 1 201 1 187 6.04e-23 92.4
Msa0540640 AT5G65050.3 34.091 176 101 4 1 173 1 164 7.01e-23 91.7
Msa0540640 AT1G31140.2 36.242 149 94 1 1 148 1 149 3.39e-22 90.1
Msa0540640 AT5G65060.1 33.333 171 101 4 1 169 1 160 4.61e-22 89.4
Msa0540640 AT5G65070.2 32.143 196 101 5 1 169 1 191 5.72e-22 89.7
Msa0540640 AT5G65080.3 31.928 166 98 4 1 163 8 161 6.64e-22 89.0
Msa0540640 AT1G31140.1 38.000 150 88 3 1 148 1 147 7.09e-22 89.4
Msa0540640 AT5G10140.4 31.737 167 87 3 1 158 1 149 7.75e-22 88.2
Msa0540640 AT5G65050.5 33.333 180 94 4 1 177 1 157 1.50e-21 87.8
Msa0540640 AT5G65050.1 34.356 163 92 4 1 160 1 151 4.94e-21 86.3
Msa0540640 AT5G65070.4 48.571 70 36 0 1 70 1 70 7.54e-21 84.7
Msa0540640 AT5G10140.2 32.484 157 79 3 1 148 1 139 1.24e-20 84.7
Msa0540640 AT5G65070.5 30.882 204 109 5 1 177 1 199 1.58e-20 85.5
Msa0540640 AT5G65060.2 32.402 179 97 4 1 177 1 157 1.82e-20 84.7
Msa0540640 AT5G10140.3 32.484 157 79 3 1 148 1 139 1.90e-20 84.7
Msa0540640 AT5G10140.1 32.484 157 79 3 1 148 1 139 2.71e-20 84.7
Msa0540640 AT1G77080.4 33.146 178 108 3 1 177 1 168 3.92e-20 84.3
Msa0540640 AT5G65070.3 31.795 195 104 6 1 169 1 192 4.58e-20 84.7
Msa0540640 AT1G77080.11 33.529 170 102 3 1 169 1 160 4.96e-20 83.6
Msa0540640 AT1G77080.5 33.529 170 102 3 1 169 1 160 8.92e-20 82.8
Msa0540640 AT1G77080.8 29.703 202 110 4 1 177 1 195 2.69e-18 80.1
Msa0540640 AT1G77080.2 32.778 180 102 5 1 177 1 164 1.91e-17 77.0
Msa0540640 AT5G65080.2 52.542 59 28 0 1 59 8 66 4.74e-16 73.6
Msa0540640 AT1G77980.1 44.595 74 41 0 1 74 1 74 6.62e-16 75.1
Msa0540640 AT4G37435.1 37.168 113 68 1 1 113 1 110 1.14e-15 72.0
Msa0540640 AT1G22130.1 42.667 75 43 0 1 75 1 75 2.32e-15 73.6
Msa0540640 AT1G77080.12 32.919 161 89 5 1 158 1 145 2.97e-15 70.1
Msa0540640 AT1G72350.1 47.887 71 34 1 2 72 43 110 1.57e-14 69.7
Msa0540640 AT2G34440.1 34.259 108 67 2 1 105 1 107 4.55e-14 67.8
Msa0540640 AT1G77950.3 36.585 82 52 0 1 82 1 82 3.23e-13 66.6
Msa0540640 AT1G77950.2 36.585 82 52 0 1 82 1 82 3.23e-13 66.6
Msa0540640 AT1G77950.1 36.585 82 52 0 1 82 1 82 3.23e-13 66.6
Msa0540640 AT1G77950.4 36.585 82 52 0 1 82 1 82 3.23e-13 66.6
Msa0540640 AT2G24840.1 42.254 71 40 1 1 71 62 131 3.27e-13 67.0
Msa0540640 AT2G03060.3 44.000 75 41 1 1 74 1 75 1.44e-12 65.9
Msa0540640 AT2G03060.7 44.000 75 41 1 1 74 1 75 1.44e-12 65.9
Msa0540640 AT2G03060.1 44.000 75 41 1 1 74 1 75 1.44e-12 65.9
Msa0540640 AT1G01530.1 48.276 58 30 0 1 58 6 63 1.46e-12 64.7
Msa0540640 AT2G03060.2 44.000 75 41 1 1 74 1 75 1.64e-12 65.9
Msa0540640 AT3G66656.1 46.552 58 31 0 1 58 1 58 1.91e-12 63.5
Msa0540640 AT1G18750.4 41.333 75 43 1 1 74 1 75 6.91e-12 63.9
Msa0540640 AT1G18750.3 37.113 97 56 2 1 96 1 93 6.98e-12 63.9
Msa0540640 AT1G18750.1 41.333 75 43 1 1 74 1 75 7.18e-12 63.9
Msa0540640 AT1G69540.1 39.189 74 45 0 1 74 1 74 1.72e-11 62.8
Msa0540640 AT4G36590.1 43.478 69 38 1 2 70 7 74 2.04e-11 61.6
Msa0540640 AT1G69540.2 39.189 74 45 0 1 74 1 74 2.46e-11 62.4

Find 52 sgRNAs with CRISPR-Local

Find 399 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTTGTTTGGAGGAGGATT+AGG 0.243362 4_1:-23298958 Msa0540640:CDS
CGTGCTTCAGTTACAGCTTC+AGG 0.305131 4_1:+23302078 None:intergenic
GTGCTTTGCGATGCTGAAAT+TGG 0.317759 4_1:-23302649 Msa0540640:CDS
TTGAAAAGAACCTCGAAATC+TGG 0.328582 4_1:-23298906 Msa0540640:CDS
TAACCTTATCCCTCAAAGTT+TGG 0.340993 4_1:+23298683 None:intergenic
ATTTGTTTGGAGGAGGATTA+GGG 0.367328 4_1:-23298957 Msa0540640:CDS
AAATAAGTATCTCCATGATT+TGG 0.377590 4_1:-23295401 Msa0540640:intron
AATCCAAACTTTGAGGGATA+AGG 0.388651 4_1:-23298686 Msa0540640:intron
ATTATTGGCAGGTATTTGTT+TGG 0.401347 4_1:-23298970 Msa0540640:intron
TGGAGGAGGATTAGGGACTA+TGG 0.415641 4_1:-23298950 Msa0540640:CDS
ATTTAAGGAGGGAACACTTA+AGG 0.425708 4_1:-23295428 Msa0540640:intron
GGCAGGTATTTGTTTGGAGG+AGG 0.434879 4_1:-23298964 Msa0540640:intron
TTCCCACTAATTATACAAGA+TGG 0.434963 4_1:-23295216 Msa0540640:CDS
AAAGTCACTTGCCTGTGCAC+TGG 0.436750 4_1:+23302718 None:intergenic
AGAGATCGATACCTTGCAAA+AGG 0.454575 4_1:-23299535 Msa0540640:CDS
ATCCCATCTTGTATAATTAG+TGG 0.454812 4_1:+23295213 None:intergenic
AAGTCACTTGCCTGTGCACT+GGG 0.471642 4_1:+23302719 None:intergenic
AGGAATATATTACCAAATCA+TGG 0.478389 4_1:+23295389 None:intergenic
ACTTTCTGTAAGCGCCGAGC+GGG 0.485647 4_1:-23302700 Msa0540640:CDS
ATTGGCAGGTATTTGTTTGG+AGG 0.487880 4_1:-23298967 Msa0540640:intron
CCGAGCGGGGCTTCTAAAGA+AGG 0.488715 4_1:-23302686 Msa0540640:CDS
CACAAGAAATCCAAACTTTG+AGG 0.490472 4_1:-23298693 Msa0540640:CDS
CTCTATGAACTCGCCACCAA+AGG 0.491747 4_1:-23302598 Msa0540640:CDS
CTTCTCTATTAGCCCTTGCA+TGG 0.492434 4_1:+23302128 None:intergenic
CATTATACATCCAGATTTCG+AGG 0.493442 4_1:+23298896 None:intergenic
ATACCTTGCAAAAGGGTCTC+AGG 0.496187 4_1:-23299527 Msa0540640:intron
AACGAAGTATCAGTAGCAAA+TGG 0.506323 4_1:+23295237 None:intergenic
TGAAGCACGTCCTCTTGTAT+TGG 0.509803 4_1:-23302064 Msa0540640:intron
TCCCACTAATTATACAAGAT+GGG 0.527346 4_1:-23295215 Msa0540640:CDS
TTCATAGAGCTTTCCATGAG+CGG 0.532053 4_1:+23302612 None:intergenic
AATCGACATGGCTCGCGGGA+AGG 0.534307 4_1:-23302764 None:intergenic
ACAAGAAATCCAAACTTTGA+GGG 0.536382 4_1:-23298692 Msa0540640:CDS
CCTTCTTTAGAAGCCCCGCT+CGG 0.544771 4_1:+23302686 None:intergenic
GTATAATGTTCGCTCAATGA+AGG 0.550286 4_1:-23298881 Msa0540640:intron
TCTATGAACTCGCCACCAAA+GGG 0.554348 4_1:-23302597 Msa0540640:intron
TCCCATCTTGTATAATTAGT+GGG 0.555246 4_1:+23295214 None:intergenic
GAATTGAGAACCCAGTGCAC+AGG 0.556607 4_1:-23302729 Msa0540640:CDS
ATGAAATGAAGAACCATGCA+AGG 0.564040 4_1:-23302141 Msa0540640:intron
GGGGCTTCTAAAGAAGGCTA+AGG 0.573499 4_1:-23302680 Msa0540640:CDS
TCATATCTAGGATGCTAAAG+AGG 0.576504 4_1:-23299577 Msa0540640:intron
GAGATCGATACCTTGCAAAA+GGG 0.585390 4_1:-23299534 Msa0540640:CDS
AGGATTAGGGACTATGGCAA+TGG 0.589394 4_1:-23298944 Msa0540640:CDS
AAAAGAGACATACCCTTTGG+TGG 0.593726 4_1:+23302585 None:intergenic
CTCGCGGGAAGGTTCAGCTA+AGG 0.601343 4_1:-23302753 Msa0540640:CDS
GATCTCTTGCTTGAGCACAT+TGG 0.611486 4_1:+23299551 None:intergenic
CTTTCTGTAAGCGCCGAGCG+GGG 0.616522 4_1:-23302699 Msa0540640:CDS
TAGAGACATACCAATACAAG+AGG 0.623099 4_1:+23302054 None:intergenic
TGAAATGAAGAACCATGCAA+GGG 0.639061 4_1:-23302140 Msa0540640:intron
GACTTTCTGTAAGCGCCGAG+CGG 0.650769 4_1:-23302701 Msa0540640:CDS
TAAGGAGGGAACACTTAAGG+CGG 0.674035 4_1:-23295425 Msa0540640:intron
AAGTACTTGAAGTTCACACG+AGG 0.730119 4_1:-23302108 Msa0540640:CDS
AGTACTTGAAGTTCACACGA+GGG 0.748606 4_1:-23302107 Msa0540640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTTA+AGG - chr4_1:23298594-23298613 Msa0540640:intron 0.0%
!! TATATATATATATATATACC+CGG - chr4_1:23296161-23296180 Msa0540640:intron 10.0%
!! AAGTAAAAATATATCAATAA+GGG + chr4_1:23296602-23296621 None:intergenic 10.0%
!!! AAAAATAATAATACTCTTTT+CGG + chr4_1:23296887-23296906 None:intergenic 10.0%
!!! TTTTTTAATAAAAAAATGTC+AGG + chr4_1:23297338-23297357 None:intergenic 10.0%
!! TAGAACAAAAAAAAAAAAAA+TGG - chr4_1:23297599-23297618 Msa0540640:intron 10.0%
!! TTACAAATTATTATATAAAG+TGG - chr4_1:23297813-23297832 Msa0540640:intron 10.0%
!!! AAAAATTGATTCAAATTAAA+TGG + chr4_1:23298556-23298575 None:intergenic 10.0%
!! AAAAAAAAAAAACTCTTTAA+TGG + chr4_1:23298586-23298605 None:intergenic 10.0%
!!! GTTTAATTTTCTTAATTTTT+TGG + chr4_1:23298964-23298983 None:intergenic 10.0%
!!! TTTGAGTAAATTTTAAAAAA+AGG - chr4_1:23299192-23299211 Msa0540640:intron 10.0%
!! AATAAGTATATTTACATTTA+CGG + chr4_1:23299390-23299409 None:intergenic 10.0%
!! AATATATAAAAGATGAAAAA+TGG - chr4_1:23302256-23302275 Msa0540640:intron 10.0%
!! GAAGTAAAAATATATCAATA+AGG + chr4_1:23296603-23296622 None:intergenic 15.0%
!! AAACGACATTTAAAAATAAA+CGG + chr4_1:23296628-23296647 None:intergenic 15.0%
!! AAAAAAATTGTTTGAGTAAT+AGG + chr4_1:23296726-23296745 None:intergenic 15.0%
!!! TACTCAAACAATTTTTTTTT+TGG - chr4_1:23296728-23296747 Msa0540640:intron 15.0%
!! GAACATATTATAAATAATTG+TGG + chr4_1:23297026-23297045 None:intergenic 15.0%
!! AAAAAAAAAAATGGAAATTG+CGG - chr4_1:23297608-23297627 Msa0540640:intron 15.0%
!!! ACATTAGATTATTATTTCTT+TGG - chr4_1:23298766-23298785 Msa0540640:intron 15.0%
!! TATGAATGATTAAATACAAT+GGG + chr4_1:23298844-23298863 None:intergenic 15.0%
!! ATATGAATGATTAAATACAA+TGG + chr4_1:23298845-23298864 None:intergenic 15.0%
!! TTCAATATTTATTACATTTG+AGG - chr4_1:23299440-23299459 Msa0540640:intron 15.0%
!! TTTGATATTATCTTAGAATT+GGG + chr4_1:23302025-23302044 None:intergenic 15.0%
!!! TTTTGATATTATCTTAGAAT+TGG + chr4_1:23302026-23302045 None:intergenic 15.0%
!!! TTATTCAAAAGACAATGTTT+TGG - chr4_1:23296412-23296431 Msa0540640:intron 20.0%
!!! TATTCAAAAGACAATGTTTT+GGG - chr4_1:23296413-23296432 Msa0540640:intron 20.0%
!!! CTATTTTACAAAACAACAAA+TGG - chr4_1:23296525-23296544 Msa0540640:intron 20.0%
!! TATATATGACATCAAATGAT+AGG - chr4_1:23297050-23297069 Msa0540640:intron 20.0%
!!! CTTACAATTTTAAGTAAAAG+AGG - chr4_1:23297139-23297158 Msa0540640:intron 20.0%
!!! ATGATTTTAAATTGTTGTTG+CGG - chr4_1:23297661-23297680 Msa0540640:intron 20.0%
!!! AGTGTTTCAATAAAATTTTG+CGG + chr4_1:23297710-23297729 None:intergenic 20.0%
!!! TTGTCTGATGATATTATTTT+TGG - chr4_1:23298320-23298339 Msa0540640:intron 20.0%
!!! ATTGATTCAAATTAAATGGA+TGG + chr4_1:23298552-23298571 None:intergenic 20.0%
!! CTACATGATATATGATAAAA+TGG + chr4_1:23299596-23299615 None:intergenic 20.0%
!! TGTAAGGCTTATTAATATTA+CGG + chr4_1:23299819-23299838 None:intergenic 20.0%
!!! AATCTTGCATATATTTTAAG+TGG + chr4_1:23300016-23300035 None:intergenic 20.0%
!! TAGAAATGGTTAAGTTAATT+TGG + chr4_1:23300122-23300141 None:intergenic 20.0%
!! TTTGTAAAGTAAATGATCAA+GGG + chr4_1:23300389-23300408 None:intergenic 20.0%
!! ATTTGTAAAGTAAATGATCA+AGG + chr4_1:23300390-23300409 None:intergenic 20.0%
!! TATTAGGTCAAATGTATTAA+AGG + chr4_1:23300534-23300553 None:intergenic 20.0%
!!! ACTTTTATCTAATGTTAGAT+GGG + chr4_1:23301505-23301524 None:intergenic 20.0%
!!! AACTTTTATCTAATGTTAGA+TGG + chr4_1:23301506-23301525 None:intergenic 20.0%
!! GCAAATAAAGTGAAAATATA+AGG - chr4_1:23301608-23301627 Msa0540640:intron 20.0%
!! AATAAAGTGAAAATATAAGG+TGG - chr4_1:23301611-23301630 Msa0540640:intron 20.0%
!! ATAAAGTGAAAATATAAGGT+GGG - chr4_1:23301612-23301631 Msa0540640:intron 20.0%
!! AGGGAAAAAAATGTAAAAAA+AGG - chr4_1:23301809-23301828 Msa0540640:intron 20.0%
!! AAGATGAAAAATGGAATAAA+AGG - chr4_1:23302265-23302284 Msa0540640:intron 20.0%
!! AGATGAAAAATGGAATAAAA+GGG - chr4_1:23302266-23302285 Msa0540640:intron 20.0%
!! AAATACAATGAAAAAATGTG+TGG - chr4_1:23302367-23302386 Msa0540640:intron 20.0%
!!! TTTTTGTTCTCTTTGTAATT+TGG + chr4_1:23302413-23302432 None:intergenic 20.0%
!! ATAATAGCACATTCATATTA+GGG + chr4_1:23302450-23302469 None:intergenic 20.0%
!! AATAATAGCACATTCATATT+AGG + chr4_1:23302451-23302470 None:intergenic 20.0%
!!! CTTTTCATCTTTTGTATTTA+AGG - chr4_1:23302514-23302533 Msa0540640:intron 20.0%
!!! TTCATGTCATTTTATTTTAC+AGG - chr4_1:23302665-23302684 Msa0540640:CDS 20.0%
!! CTATATATTGCAAAGTTTTG+CGG + chr4_1:23295477-23295496 None:intergenic 25.0%
! ATGTAAAGTTAAGCAATGTA+CGG + chr4_1:23295551-23295570 None:intergenic 25.0%
! GAAATCCAAACAAATATGTT+TGG - chr4_1:23295589-23295608 Msa0540640:intron 25.0%
! GAAATCCAAACATATTTGTT+TGG + chr4_1:23295597-23295616 None:intergenic 25.0%
! AATTAAAAGAGTAGTGATAG+TGG - chr4_1:23296017-23296036 Msa0540640:intron 25.0%
! TTCTATGAGATAAAGTATGT+CGG - chr4_1:23296250-23296269 Msa0540640:intron 25.0%
! ATTGTTTGAGTAATAGGAAA+GGG + chr4_1:23296720-23296739 None:intergenic 25.0%
! AATTGTTTGAGTAATAGGAA+AGG + chr4_1:23296721-23296740 None:intergenic 25.0%
! AACTTTCATGAAACTAAATC+CGG - chr4_1:23296765-23296784 Msa0540640:intron 25.0%
! AAACCACTATTATATAGAAC+CGG + chr4_1:23296787-23296806 None:intergenic 25.0%
! TCATTTATACAACAAGCTTT+CGG + chr4_1:23296928-23296947 None:intergenic 25.0%
! TTAGAGAAGATGTTAGAAAA+AGG + chr4_1:23297179-23297198 None:intergenic 25.0%
!!! TATATACGATCCATTTTTAG+AGG + chr4_1:23297242-23297261 None:intergenic 25.0%
! TATTAAAAAAAATCAGGACG+AGG - chr4_1:23297348-23297367 Msa0540640:intron 25.0%
! ATTAAAAAAAATCAGGACGA+GGG - chr4_1:23297349-23297368 Msa0540640:intron 25.0%
! GAAAATTCATTTACTTCTGT+TGG - chr4_1:23297409-23297428 Msa0540640:intron 25.0%
!! AGTATGGTCAGTAAATTTTA+TGG + chr4_1:23297852-23297871 None:intergenic 25.0%
!! AGAATTTTCATTAGATCGAA+AGG - chr4_1:23297945-23297964 Msa0540640:intron 25.0%
!!! GGTTCTGAAAATTTCAATTT+TGG - chr4_1:23297982-23298001 Msa0540640:intron 25.0%
! AGACTAAATTCGTCTTAATA+CGG - chr4_1:23298026-23298045 Msa0540640:intron 25.0%
! TGTTTACAACAACAAACAAT+TGG + chr4_1:23298150-23298169 None:intergenic 25.0%
!!! TTTTTTGCATGTTCATATCT+AGG - chr4_1:23298368-23298387 Msa0540640:intron 25.0%
!! TCGATGACTTTTCAATATTT+TGG + chr4_1:23298487-23298506 None:intergenic 25.0%
! AGAAAATTAAACGGCATTAT+TGG - chr4_1:23298972-23298991 Msa0540640:intron 25.0%
!! TTTTTCTCTCTCTTAATTAG+TGG - chr4_1:23299115-23299134 Msa0540640:intron 25.0%
!! TTTTCTCTCTCTTAATTAGT+GGG - chr4_1:23299116-23299135 Msa0540640:intron 25.0%
! CATCTGTAGTTCAAAATATA+AGG + chr4_1:23299234-23299253 None:intergenic 25.0%
! GCTTATTAATATTACGGTAA+TGG + chr4_1:23299813-23299832 None:intergenic 25.0%
!! TTATACTTTTCTTCGTTAGA+TGG + chr4_1:23299922-23299941 None:intergenic 25.0%
! GAATACGAATATTGAGAAAA+TGG + chr4_1:23300039-23300058 None:intergenic 25.0%
!!! GAGAAATAGTATCATTTTTC+TGG + chr4_1:23300065-23300084 None:intergenic 25.0%
! CAAATCTTAAGCATTAGAAA+TGG + chr4_1:23300136-23300155 None:intergenic 25.0%
! CAAGTTCTTAAAGTTTCAAA+AGG + chr4_1:23300455-23300474 None:intergenic 25.0%
!!! TTGAGACTTTTGAAACTTAA+AGG - chr4_1:23300476-23300495 Msa0540640:intron 25.0%
! GTGGAAATGTAGTTATTATT+AGG + chr4_1:23300550-23300569 None:intergenic 25.0%
!!! GAAATTGTTTTGTTATCCTT+TGG + chr4_1:23300572-23300591 None:intergenic 25.0%
! AATAACCGAATTCAAAGTTT+AGG - chr4_1:23300623-23300642 Msa0540640:intron 25.0%
! AAGGAACTCAATTTACATTT+AGG - chr4_1:23300685-23300704 Msa0540640:intron 25.0%
! TTTACATTTAGGAAATGTTG+AGG - chr4_1:23300696-23300715 Msa0540640:intron 25.0%
! TATCATGTGCATATTGAATA+TGG - chr4_1:23300857-23300876 Msa0540640:intron 25.0%
! ATCATGTGCATATTGAATAT+GGG - chr4_1:23300858-23300877 Msa0540640:intron 25.0%
! AATCAAATCTCAATTCCATA+AGG + chr4_1:23301007-23301026 None:intergenic 25.0%
! TATAGTAAAATGGTTATGCT+TGG + chr4_1:23301272-23301291 None:intergenic 25.0%
!! TGAATTTCTTCAAATCGTTT+TGG + chr4_1:23301342-23301361 None:intergenic 25.0%
! TTTGCTAATTTAATAGAGTC+AGG + chr4_1:23301593-23301612 None:intergenic 25.0%
! TAAAATTTATGCCTCAATGT+GGG - chr4_1:23301739-23301758 Msa0540640:intron 25.0%
! CGACTTTGTAATATAGAAAA+GGG - chr4_1:23301780-23301799 Msa0540640:intron 25.0%
! AATATAGAAAAGGGAAATAG+AGG - chr4_1:23301789-23301808 Msa0540640:intron 25.0%
! ATATAGAAAAGGGAAATAGA+GGG - chr4_1:23301790-23301809 Msa0540640:intron 25.0%
! GATGTATTTCCTATCTTATT+AGG + chr4_1:23301872-23301891 None:intergenic 25.0%
!! GATGTTAAAGAGTTTCATTT+TGG - chr4_1:23301913-23301932 Msa0540640:intron 25.0%
! TAATGTGGTACAAAAAAACT+TGG + chr4_1:23302054-23302073 None:intergenic 25.0%
! CTTGAAAATAAGATCAATAG+TGG - chr4_1:23302154-23302173 Msa0540640:intron 25.0%
!! ATATGTAGCATTTGTTAACA+CGG + chr4_1:23302216-23302235 None:intergenic 25.0%
! GACTTATTTGTAATCAACAT+TGG + chr4_1:23302295-23302314 None:intergenic 25.0%
!! TTCATCTTTTGTATTTAAGG+AGG - chr4_1:23302517-23302536 Msa0540640:intron 25.0%
!! TCATCTTTTGTATTTAAGGA+GGG - chr4_1:23302518-23302537 Msa0540640:intron 25.0%
! AAATAAGTATCTCCATGATT+TGG - chr4_1:23302556-23302575 Msa0540640:intron 25.0%
! AGGAATATATTACCAAATCA+TGG + chr4_1:23302571-23302590 None:intergenic 25.0%
! TGCATAGTTAATCAATTGAA+AGG + chr4_1:23302591-23302610 None:intergenic 25.0%
!!! TCATTTTATTTTACAGGTGT+TGG - chr4_1:23302671-23302690 Msa0540640:CDS 25.0%
! TTTAGGGTTATGCAAATGAT+CGG + chr4_1:23295430-23295449 None:intergenic 30.0%
CGCAAAACTTTGCAATATAT+AGG - chr4_1:23295475-23295494 Msa0540640:intron 30.0%
TGCATCATACATAGTGTTAT+AGG + chr4_1:23295619-23295638 None:intergenic 30.0%
! ATTTAGAGCTCTACATTGTA+GGG - chr4_1:23295723-23295742 Msa0540640:intron 30.0%
! ATAGCCCATCAAGTTTATTT+TGG - chr4_1:23295750-23295769 Msa0540640:intron 30.0%
GTGACCAAAATAAACTTGAT+GGG + chr4_1:23295757-23295776 None:intergenic 30.0%
AGTGACCAAAATAAACTTGA+TGG + chr4_1:23295758-23295777 None:intergenic 30.0%
CTTGATTTCTATATTTGACC+GGG + chr4_1:23296182-23296201 None:intergenic 30.0%
CCTTGATTTCTATATTTGAC+CGG + chr4_1:23296183-23296202 None:intergenic 30.0%
TCTATGAGATAAAGTATGTC+GGG - chr4_1:23296251-23296270 Msa0540640:intron 30.0%
AATAAGGGATATTGTGAAGA+GGG + chr4_1:23296587-23296606 None:intergenic 30.0%
TGCACGCTTAAATTATCAAA+AGG + chr4_1:23296683-23296702 None:intergenic 30.0%
AATCCGGTTCTATATAATAG+TGG - chr4_1:23296781-23296800 Msa0540640:intron 30.0%
AAGTAATGACACCTTAATCA+AGG - chr4_1:23297096-23297115 Msa0540640:intron 30.0%
! AGTATTTGCTACCTTGATTA+AGG + chr4_1:23297110-23297129 None:intergenic 30.0%
CTTATTGTGTGAAATTCATG+TGG - chr4_1:23297209-23297228 Msa0540640:intron 30.0%
! TGGATATCATCCTCTAAAAA+TGG - chr4_1:23297229-23297248 Msa0540640:intron 30.0%
AAAATGGATCGTATATAGAG+TGG - chr4_1:23297245-23297264 Msa0540640:intron 30.0%
AGGGAATGACACTTAAATTA+AGG - chr4_1:23297368-23297387 Msa0540640:intron 30.0%
AAAACCTCTTATACTTCACT+AGG - chr4_1:23297470-23297489 Msa0540640:intron 30.0%
TGTATGTAACTTAGAAGAGT+TGG + chr4_1:23297496-23297515 None:intergenic 30.0%
CGGTTGCAAAAAATAAACAT+CGG + chr4_1:23297690-23297709 None:intergenic 30.0%
GTGTGTTACAAGAAAATCTA+GGG + chr4_1:23297766-23297785 None:intergenic 30.0%
TGTGTGTTACAAGAAAATCT+AGG + chr4_1:23297767-23297786 None:intergenic 30.0%
! CAGTAAATTTTATGGTAGCA+CGG + chr4_1:23297844-23297863 None:intergenic 30.0%
AGAAAATTTGCACTCTAGTA+TGG + chr4_1:23297868-23297887 None:intergenic 30.0%
! TACTTTTAGCAATCTCTCAA+CGG + chr4_1:23297925-23297944 None:intergenic 30.0%
TAGTATAAACATCATGCACT+AGG + chr4_1:23298644-23298663 None:intergenic 30.0%
ATTATTGGCAGGTATTTGTT+TGG - chr4_1:23298987-23299006 Msa0540640:intron 30.0%
AGAGAGAGAAAAAAGTTTGT+TGG + chr4_1:23299108-23299127 None:intergenic 30.0%
ACAAGAAATCCAAACTTTGA+GGG - chr4_1:23299265-23299284 Msa0540640:intron 30.0%
!! TATGCTTGATAGTGTGAAAA+AGG - chr4_1:23299561-23299580 Msa0540640:CDS 30.0%
! TGATAGTGTGAAAAAGGTTT+AGG - chr4_1:23299567-23299586 Msa0540640:CDS 30.0%
GATAGTACACTATATAATGC+TGG + chr4_1:23299672-23299691 None:intergenic 30.0%
GCTTATAGAAAAGAAGACAA+AGG - chr4_1:23299976-23299995 Msa0540640:intron 30.0%
ATGCTTAAGATTTGATGAAG+AGG - chr4_1:23300142-23300161 Msa0540640:intron 30.0%
TGCTTAAGATTTGATGAAGA+GGG - chr4_1:23300143-23300162 Msa0540640:intron 30.0%
!! AAAAATTTCTAGGGTGAAGT+GGG + chr4_1:23300418-23300437 None:intergenic 30.0%
TAAAGTTTCAAAAGGCCAAA+GGG + chr4_1:23300447-23300466 None:intergenic 30.0%
TTAAAGTTTCAAAAGGCCAA+AGG + chr4_1:23300448-23300467 None:intergenic 30.0%
TGAAACTTAAAGGACTACTT+TGG - chr4_1:23300486-23300505 Msa0540640:intron 30.0%
GAAACTTAAAGGACTACTTT+GGG - chr4_1:23300487-23300506 Msa0540640:intron 30.0%
GGGAAAAACGAAAAACTTAA+AGG - chr4_1:23300507-23300526 Msa0540640:intron 30.0%
AATAACTACATTTCCACCAA+AGG - chr4_1:23300553-23300572 Msa0540640:intron 30.0%
!! ATTGTTTTGTTATCCTTTGG+TGG + chr4_1:23300569-23300588 None:intergenic 30.0%
TTTGAATTCGGTTATTGATG+TGG + chr4_1:23300619-23300638 None:intergenic 30.0%
GTTGTCCTAAACTTTGAATT+CGG + chr4_1:23300631-23300650 None:intergenic 30.0%
! TCCTTTCTTTCGTGTATTTT+GGG + chr4_1:23300670-23300689 None:intergenic 30.0%
! TTCCTTTCTTTCGTGTATTT+TGG + chr4_1:23300671-23300690 None:intergenic 30.0%
TTCTCCAAGAGTAAGTTAAT+AGG + chr4_1:23300746-23300765 None:intergenic 30.0%
!!! TGGAGAAGTTACTTTTAATC+CGG - chr4_1:23300759-23300778 Msa0540640:intron 30.0%
! AGATGGTTCTATTTAGTTTC+CGG + chr4_1:23300781-23300800 None:intergenic 30.0%
! TGATACACTCTTATTTGGTA+AGG + chr4_1:23300842-23300861 None:intergenic 30.0%
! GAATTGAGATTTGATTCGTA+AGG - chr4_1:23301011-23301030 Msa0540640:intron 30.0%
ATTCATTCACAAGTACGAAA+AGG - chr4_1:23301035-23301054 Msa0540640:intron 30.0%
ACCTCTTCAACATATAAGTA+AGG - chr4_1:23301113-23301132 Msa0540640:intron 30.0%
TCCTTACTTATATGTTGAAG+AGG + chr4_1:23301117-23301136 None:intergenic 30.0%
TGGCTAAGGTTATAGTAAAA+TGG + chr4_1:23301282-23301301 None:intergenic 30.0%
TGGAATTTAATACACCTTCT+TGG + chr4_1:23301322-23301341 None:intergenic 30.0%
GCAGAAAAAAAAAATGCTAG+AGG + chr4_1:23301403-23301422 None:intergenic 30.0%
TATCTAATGTTAGATGGGAT+AGG + chr4_1:23301500-23301519 None:intergenic 30.0%
!!! ACCTCTTGTTTTATTCTTGA+TGG - chr4_1:23301543-23301562 Msa0540640:intron 30.0%
TCCATCAAGAATAAAACAAG+AGG + chr4_1:23301547-23301566 None:intergenic 30.0%
!!! CTTGTTTTATTCTTGATGGA+TGG - chr4_1:23301547-23301566 Msa0540640:intron 30.0%
TTTAGTATGTGGTGTTTGTA+TGG + chr4_1:23301658-23301677 None:intergenic 30.0%
TTCGTCAGTTATTTAGTATG+TGG + chr4_1:23301669-23301688 None:intergenic 30.0%
GTAAAATTTATGCCTCAATG+TGG - chr4_1:23301738-23301757 Msa0540640:intron 30.0%
GCGACTTTGTAATATAGAAA+AGG - chr4_1:23301779-23301798 Msa0540640:intron 30.0%
AATACATCAAGCAACACAAA+AGG - chr4_1:23301884-23301903 Msa0540640:intron 30.0%
ATACATCAAGCAACACAAAA+GGG - chr4_1:23301885-23301904 Msa0540640:intron 30.0%
! GTTTCATTTTGGATCATACA+TGG - chr4_1:23301924-23301943 Msa0540640:intron 30.0%
CGAAATCAACTTGTAAAGTA+AGG + chr4_1:23301981-23302000 None:intergenic 30.0%
GAAAATAAGATCAATAGTGG+TGG - chr4_1:23302157-23302176 Msa0540640:intron 30.0%
TAAGTCAAAAGCTAACACAA+AGG - chr4_1:23302309-23302328 Msa0540640:intron 30.0%
AAGTCAAAAGCTAACACAAA+GGG - chr4_1:23302310-23302329 Msa0540640:intron 30.0%
TTCCCACTAATTATACAAGA+TGG - chr4_1:23302741-23302760 Msa0540640:CDS 30.0%
TCCCACTAATTATACAAGAT+GGG - chr4_1:23302742-23302761 Msa0540640:CDS 30.0%
TCCCATCTTGTATAATTAGT+GGG + chr4_1:23302746-23302765 None:intergenic 30.0%
ATCCCATCTTGTATAATTAG+TGG + chr4_1:23302747-23302766 None:intergenic 30.0%
GAAAAAAGAGACATACCCTT+TGG + chr4_1:23295378-23295397 None:intergenic 35.0%
TACACACACTACATCGTTTA+GGG + chr4_1:23295446-23295465 None:intergenic 35.0%
TTACACACACTACATCGTTT+AGG + chr4_1:23295447-23295466 None:intergenic 35.0%
TTTACATATAACCAGCGTAG+CGG - chr4_1:23295564-23295583 Msa0540640:intron 35.0%
!! AGCTCTAAATGCATTGAGTA+CGG + chr4_1:23295713-23295732 None:intergenic 35.0%
! CATTTAGAGCTCTACATTGT+AGG - chr4_1:23295722-23295741 Msa0540640:intron 35.0%
ATGAAATGAAGAACCATGCA+AGG - chr4_1:23295816-23295835 Msa0540640:intron 35.0%
TGAAATGAAGAACCATGCAA+GGG - chr4_1:23295817-23295836 Msa0540640:intron 35.0%
TAGAGACATACCAATACAAG+AGG + chr4_1:23295906-23295925 None:intergenic 35.0%
TGCTAGATGTAGAAGCAAAA+TGG - chr4_1:23295960-23295979 Msa0540640:intron 35.0%
!! AAGAGTAGTGATAGTGGTAT+TGG - chr4_1:23296023-23296042 Msa0540640:intron 35.0%
CCGGTCAAATATAGAAATCA+AGG - chr4_1:23296180-23296199 Msa0540640:intron 35.0%
!!! TGTCTTGTTTTGACACATGT+AGG - chr4_1:23296221-23296240 Msa0540640:intron 35.0%
TTGTCTAAGCATTAAGCACA+AGG + chr4_1:23296367-23296386 None:intergenic 35.0%
!! CAAAAGACAATGTTTTGGGT+TGG - chr4_1:23296417-23296436 Msa0540640:intron 35.0%
CAATAAGGGATATTGTGAAG+AGG + chr4_1:23296588-23296607 None:intergenic 35.0%
CCAAAAATGCACTTCATTAG+CGG - chr4_1:23296829-23296848 Msa0540640:intron 35.0%
!! AGAAAATCTAGGGCTTGTTA+CGG + chr4_1:23297756-23297775 None:intergenic 35.0%
ACGACATCATACTTCAATTG+TGG + chr4_1:23298087-23298106 None:intergenic 35.0%
! TCATATCTAGGATGCTAAAG+AGG - chr4_1:23298380-23298399 Msa0540640:intron 35.0%
AATTAAACGGCATTATTGGC+AGG - chr4_1:23298976-23298995 Msa0540640:intron 35.0%
TATTTGTTTGGAGGAGGATT+AGG - chr4_1:23298999-23299018 Msa0540640:intron 35.0%
ATTTGTTTGGAGGAGGATTA+GGG - chr4_1:23299000-23299019 Msa0540640:intron 35.0%
TTGAAAAGAACCTCGAAATC+TGG - chr4_1:23299051-23299070 Msa0540640:intron 35.0%
CATTATACATCCAGATTTCG+AGG + chr4_1:23299064-23299083 None:intergenic 35.0%
GTATAATGTTCGCTCAATGA+AGG - chr4_1:23299076-23299095 Msa0540640:intron 35.0%
CACAAGAAATCCAAACTTTG+AGG - chr4_1:23299264-23299283 Msa0540640:intron 35.0%
! AATCCAAACTTTGAGGGATA+AGG - chr4_1:23299271-23299290 Msa0540640:intron 35.0%
TAACCTTATCCCTCAAAGTT+TGG + chr4_1:23299277-23299296 None:intergenic 35.0%
TGTACTATCAAAAGTCGTAG+AGG - chr4_1:23299683-23299702 Msa0540640:intron 35.0%
GTACTATCAAAAGTCGTAGA+GGG - chr4_1:23299684-23299703 Msa0540640:intron 35.0%
TTCAAACCAAAAACAGAGTC+AGG + chr4_1:23299846-23299865 None:intergenic 35.0%
!! CCATGTGGGAAATTTGTTTT+GGG + chr4_1:23300092-23300111 None:intergenic 35.0%
!! ACCATGTGGGAAATTTGTTT+TGG + chr4_1:23300093-23300112 None:intergenic 35.0%
AATTTGGCATACAACCATGT+GGG + chr4_1:23300106-23300125 None:intergenic 35.0%
TAATTTGGCATACAACCATG+TGG + chr4_1:23300107-23300126 None:intergenic 35.0%
GCTTAAGATTTGATGAAGAG+GGG - chr4_1:23300144-23300163 Msa0540640:intron 35.0%
GTAAAGTAAATGATCAAGGG+AGG + chr4_1:23300386-23300405 None:intergenic 35.0%
!! GAAAAATTTCTAGGGTGAAG+TGG + chr4_1:23300419-23300438 None:intergenic 35.0%
AAAGTTTCAAAAGGCCAAAG+GGG + chr4_1:23300446-23300465 None:intergenic 35.0%
TGGAAAATAGACTTGGATGT+TGG + chr4_1:23300596-23300615 None:intergenic 35.0%
! AAGTTTAGGACAACCATGAA+AGG - chr4_1:23300637-23300656 Msa0540640:intron 35.0%
! TTTGGGATTCTTTCCTTTCA+TGG + chr4_1:23300653-23300672 None:intergenic 35.0%
TCCCAAAATACACGAAAGAA+AGG - chr4_1:23300666-23300685 Msa0540640:intron 35.0%
TTTAGGAAATGTTGAGGTTG+AGG - chr4_1:23300702-23300721 Msa0540640:intron 35.0%
! ATAGGTGGAGTATTCACTTA+TGG + chr4_1:23300728-23300747 None:intergenic 35.0%
TCCACCTATTAACTTACTCT+TGG - chr4_1:23300739-23300758 Msa0540640:intron 35.0%
TCCAAGAGTAAGTTAATAGG+TGG + chr4_1:23300743-23300762 None:intergenic 35.0%
! GTATGAAGGCTATTCTAAGA+TGG + chr4_1:23300798-23300817 None:intergenic 35.0%
!! GGAGAATATTTGGTGTATGA+AGG + chr4_1:23300812-23300831 None:intergenic 35.0%
GCACATGATACACTCTTATT+TGG + chr4_1:23300847-23300866 None:intergenic 35.0%
TACTTCAAAGGTTTCAAGGT+GGG + chr4_1:23300904-23300923 None:intergenic 35.0%
GATTTCTATGGCTACTTCAA+AGG + chr4_1:23300916-23300935 None:intergenic 35.0%
TATGTGAAAATTGGAGAGGA+TGG + chr4_1:23301087-23301106 None:intergenic 35.0%
GGATTATGTGAAAATTGGAG+AGG + chr4_1:23301091-23301110 None:intergenic 35.0%
GGTCTGGATTATGTGAAAAT+TGG + chr4_1:23301096-23301115 None:intergenic 35.0%
ACTTATATGTTGAAGAGGTC+TGG + chr4_1:23301112-23301131 None:intergenic 35.0%
AAGAAGCCTCCATTTAATGA+AGG - chr4_1:23301214-23301233 Msa0540640:intron 35.0%
!! AATTGGCCTTCATTAAATGG+AGG + chr4_1:23301223-23301242 None:intergenic 35.0%
TCCATTTAATGAAGGCCAAT+TGG - chr4_1:23301222-23301241 Msa0540640:intron 35.0%
!! ACCAATTGGCCTTCATTAAA+TGG + chr4_1:23301226-23301245 None:intergenic 35.0%
TTAATGAAGGCCAATTGGTT+TGG - chr4_1:23301227-23301246 Msa0540640:intron 35.0%
! CCTATTTTCACCAAACCAAT+TGG + chr4_1:23301240-23301259 None:intergenic 35.0%
!! CCAATTGGTTTGGTGAAAAT+AGG - chr4_1:23301237-23301256 Msa0540640:intron 35.0%
! AAAATGGTTATGCTTGGTGA+TGG + chr4_1:23301266-23301285 None:intergenic 35.0%
CATGTATAAGTTAGTGGCTA+AGG + chr4_1:23301296-23301315 None:intergenic 35.0%
! TGGAAGCATGTATAAGTTAG+TGG + chr4_1:23301302-23301321 None:intergenic 35.0%
ACTTATACATGCTTCCAAGA+AGG - chr4_1:23301305-23301324 Msa0540640:intron 35.0%
AATTCAAAGTTGAAACCACG+CGG - chr4_1:23301356-23301375 Msa0540640:intron 35.0%
!! TTTTGACTCATACTCACCAA+AGG - chr4_1:23301450-23301469 Msa0540640:intron 35.0%
AAATATAAGGTGGGATGAAG+AGG - chr4_1:23301621-23301640 Msa0540640:intron 35.0%
AAAAAGGTGAATACATCCCT+TGG - chr4_1:23301825-23301844 Msa0540640:intron 35.0%
AAAAGGTGAATACATCCCTT+GGG - chr4_1:23301826-23301845 Msa0540640:intron 35.0%
AGCAACGACATCATATAATG+TGG + chr4_1:23302069-23302088 None:intergenic 35.0%
TTACAAAATTGGTGTGCAAG+TGG + chr4_1:23302191-23302210 None:intergenic 35.0%
! ACTTGCACACCAATTTTGTA+AGG - chr4_1:23302190-23302209 Msa0540640:intron 35.0%
TTAACACGGCCTTACAAAAT+TGG + chr4_1:23302202-23302221 None:intergenic 35.0%
! TTTTTGCCTTGTCTATTCAG+TGG + chr4_1:23302339-23302358 None:intergenic 35.0%
ATTTAAGGAGGGAACACTTA+AGG - chr4_1:23302529-23302548 Msa0540640:intron 35.0%
! AACGAAGTATCAGTAGCAAA+TGG + chr4_1:23302723-23302742 None:intergenic 35.0%
TTCATAGAGCTTTCCATGAG+CGG + chr4_1:23295348-23295367 None:intergenic 40.0%
AAAAGAGACATACCCTTTGG+TGG + chr4_1:23295375-23295394 None:intergenic 40.0%
AGACTTCAGAGGATCTATAG+TGG - chr4_1:23295676-23295695 Msa0540640:intron 40.0%
! GCTCTAAATGCATTGAGTAC+GGG + chr4_1:23295712-23295731 None:intergenic 40.0%
AAGTACTTGAAGTTCACACG+AGG - chr4_1:23295849-23295868 Msa0540640:intron 40.0%
AGTACTTGAAGTTCACACGA+GGG - chr4_1:23295850-23295869 Msa0540640:intron 40.0%
! GTGGTATTGGATGCTCTAAT+TGG - chr4_1:23296036-23296055 Msa0540640:intron 40.0%
CAAGGTTAACAACAAAGCAG+TGG + chr4_1:23296349-23296368 None:intergenic 40.0%
TGTGAAGAGGGTAGGAATAA+GGG + chr4_1:23296575-23296594 None:intergenic 40.0%
TTGTGAAGAGGGTAGGAATA+AGG + chr4_1:23296576-23296595 None:intergenic 40.0%
! CCGCTAATGAAGTGCATTTT+TGG + chr4_1:23296832-23296851 None:intergenic 40.0%
CTGTTAGATGAAACTCACGT+GGG + chr4_1:23297276-23297295 None:intergenic 40.0%
TCTGTTAGATGAAACTCACG+TGG + chr4_1:23297277-23297296 None:intergenic 40.0%
TTGGCCTAGTGAAGTATAAG+AGG + chr4_1:23297477-23297496 None:intergenic 40.0%
CTTGTGCTAGAACAGAAGAT+AGG - chr4_1:23297728-23297747 Msa0540640:intron 40.0%
!! AAAATCTAGGGCTTGTTACG+GGG + chr4_1:23297754-23297773 None:intergenic 40.0%
!! GAAAATCTAGGGCTTGTTAC+GGG + chr4_1:23297755-23297774 None:intergenic 40.0%
GATCGAAAGGAGATTGAGAT+TGG - chr4_1:23297958-23297977 Msa0540640:intron 40.0%
AGAGATCGATACCTTGCAAA+AGG - chr4_1:23298422-23298441 Msa0540640:intron 40.0%
GAGATCGATACCTTGCAAAA+GGG - chr4_1:23298423-23298442 Msa0540640:intron 40.0%
TACAATGGGAACAACGACAT+TGG + chr4_1:23298830-23298849 None:intergenic 40.0%
ATTGGCAGGTATTTGTTTGG+AGG - chr4_1:23298990-23299009 Msa0540640:intron 40.0%
! AACAGAGTCAGGAAAGTGTA+AGG + chr4_1:23299835-23299854 None:intergenic 40.0%
! CACTTTCCTGACTCTGTTTT+TGG - chr4_1:23299837-23299856 Msa0540640:intron 40.0%
AGAAGACAAAGGAGCAGATT+TGG - chr4_1:23299987-23300006 Msa0540640:intron 40.0%
GAAGACAAAGGAGCAGATTT+GGG - chr4_1:23299988-23300007 Msa0540640:intron 40.0%
CCCAAAACAAATTTCCCACA+TGG - chr4_1:23300089-23300108 Msa0540640:intron 40.0%
TTAACTACCGTTGTGCTAAG+CGG + chr4_1:23300303-23300322 None:intergenic 40.0%
AACGGTAGTTAACTACTGCT+GGG - chr4_1:23300311-23300330 Msa0540640:intron 40.0%
GTAAATGATCAAGGGAGGTT+AGG + chr4_1:23300381-23300400 None:intergenic 40.0%
! GGGGGTGTGAAAAATTTCTA+GGG + chr4_1:23300427-23300446 None:intergenic 40.0%
! AGGGGGTGTGAAAAATTTCT+AGG + chr4_1:23300428-23300447 None:intergenic 40.0%
! GAAATTTTTCACACCCCCTT+TGG - chr4_1:23300429-23300448 Msa0540640:intron 40.0%
AAGTTTCAAAAGGCCAAAGG+GGG + chr4_1:23300445-23300464 None:intergenic 40.0%
! GATGTGGTGGAAAATAGACT+TGG + chr4_1:23300603-23300622 None:intergenic 40.0%
GAATTCGGTTATTGATGTGG+TGG + chr4_1:23300616-23300635 None:intergenic 40.0%
AGGCTTGTGTGGAGAATATT+TGG + chr4_1:23300822-23300841 None:intergenic 40.0%
CTTATTTGGTAAGGCTTGTG+TGG + chr4_1:23300833-23300852 None:intergenic 40.0%
CTACTTCAAAGGTTTCAAGG+TGG + chr4_1:23300905-23300924 None:intergenic 40.0%
TGGCTACTTCAAAGGTTTCA+AGG + chr4_1:23300908-23300927 None:intergenic 40.0%
CATGACGAAGGAGATTTCTA+TGG + chr4_1:23300928-23300947 None:intergenic 40.0%
! CTTGGTTTCTGAAGGATTAG+AGG + chr4_1:23300958-23300977 None:intergenic 40.0%
CTTTCTCTCTTGGTTTCTGA+AGG + chr4_1:23300966-23300985 None:intergenic 40.0%
CTTCAGAAACCAAGAGAGAA+AGG - chr4_1:23300964-23300983 Msa0540640:intron 40.0%
GAGAGCTAAATGAGACCTTA+TGG - chr4_1:23300989-23301008 Msa0540640:intron 40.0%
AAATTGGAGAGGATGGATGA+AGG + chr4_1:23301080-23301099 None:intergenic 40.0%
ACGCATGCAACTTGATTAGT+TGG + chr4_1:23301144-23301163 None:intergenic 40.0%
ATTAGTGGTGAATAAGGTGG+TGG + chr4_1:23301183-23301202 None:intergenic 40.0%
GGAATTAGTGGTGAATAAGG+TGG + chr4_1:23301186-23301205 None:intergenic 40.0%
TGGGGAATTAGTGGTGAATA+AGG + chr4_1:23301189-23301208 None:intergenic 40.0%
TCTTCAAGATGGGGAATTAG+TGG + chr4_1:23301198-23301217 None:intergenic 40.0%
AATGGAGGCTTCTTCAAGAT+GGG + chr4_1:23301208-23301227 None:intergenic 40.0%
AAATGGAGGCTTCTTCAAGA+TGG + chr4_1:23301209-23301228 None:intergenic 40.0%
ATCGGAGCTCCTAATAAGAT+AGG - chr4_1:23301860-23301879 Msa0540640:intron 40.0%
CATCTCTATTGAGACTTCAG+TGG + chr4_1:23302098-23302117 None:intergenic 40.0%
GTGCTTTGCGATGCTGAAAT+TGG - chr4_1:23295308-23295327 Msa0540640:intron 45.0%
!!! CTTGTCATTTTCTCCGCTCA+TGG - chr4_1:23295332-23295351 Msa0540640:intron 45.0%
TCTATGAACTCGCCACCAAA+GGG - chr4_1:23295360-23295379 Msa0540640:intron 45.0%
! TTGCAAAGTTTTGCGGTGCA+CGG + chr4_1:23295470-23295489 None:intergenic 45.0%
GCATATAGTGCAGACTTCAG+AGG - chr4_1:23295665-23295684 Msa0540640:intron 45.0%
CTTCTCTATTAGCCCTTGCA+TGG + chr4_1:23295832-23295851 None:intergenic 45.0%
TGAAGCACGTCCTCTTGTAT+TGG - chr4_1:23295893-23295912 Msa0540640:intron 45.0%
!! TGTCGGGTTTTGACACATGT+AGG - chr4_1:23296267-23296286 Msa0540640:intron 45.0%
AGGGATATTGTGAAGAGGGT+AGG + chr4_1:23296583-23296602 None:intergenic 45.0%
CGAAAGGAGATTGAGATTGG+TGG - chr4_1:23297961-23297980 Msa0540640:intron 45.0%
GATCTCTTGCTTGAGCACAT+TGG + chr4_1:23298409-23298428 None:intergenic 45.0%
ATACCTTGCAAAAGGGTCTC+AGG - chr4_1:23298430-23298449 Msa0540640:intron 45.0%
AGGATTAGGGACTATGGCAA+TGG - chr4_1:23299013-23299032 Msa0540640:intron 45.0%
AGGGGCAGAAATAGTCAAAG+AGG - chr4_1:23300162-23300181 Msa0540640:intron 45.0%
CAACGGTAGTTAACTACTGC+TGG - chr4_1:23300310-23300329 Msa0540640:intron 45.0%
ACGGTAGTTAACTACTGCTG+GGG - chr4_1:23300312-23300331 Msa0540640:intron 45.0%
!! AATTTCTAGGGTGAAGTGGG+CGG + chr4_1:23300415-23300434 None:intergenic 45.0%
! TTCTGAAGGATTAGAGGTGG+TGG + chr4_1:23300952-23300971 None:intergenic 45.0%
! GGTTTCTGAAGGATTAGAGG+TGG + chr4_1:23300955-23300974 None:intergenic 45.0%
AGCTCTCTTCCTTTCTCTCT+TGG + chr4_1:23300976-23300995 None:intergenic 45.0%
ATGGAGGCTTCTTCAAGATG+GGG + chr4_1:23301207-23301226 None:intergenic 45.0%
!! TGATGGGTTGGAGTTTCCTT+TGG + chr4_1:23301469-23301488 None:intergenic 45.0%
!! TAGGCTGAAAGTTGATGGGT+TGG + chr4_1:23301481-23301500 None:intergenic 45.0%
! GGGATAGGCTGAAAGTTGAT+GGG + chr4_1:23301485-23301504 None:intergenic 45.0%
TGGGATAGGCTGAAAGTTGA+TGG + chr4_1:23301486-23301505 None:intergenic 45.0%
! GAGTCAGGCAAGTGTTTTCT+AGG + chr4_1:23301578-23301597 None:intergenic 45.0%
ATGCCTCAATGTGGGAGTTT+AGG - chr4_1:23301747-23301766 Msa0540640:intron 45.0%
TCTCCTAAACTCCCACATTG+AGG + chr4_1:23301753-23301772 None:intergenic 45.0%
ATGTGGGAGTTTAGGAGAGA+AGG - chr4_1:23301755-23301774 Msa0540640:intron 45.0%
TGTGGGAGTTTAGGAGAGAA+GGG - chr4_1:23301756-23301775 Msa0540640:intron 45.0%
! CGATGTTGGTAGATTCCCAA+GGG + chr4_1:23301844-23301863 None:intergenic 45.0%
CCTTGGGAATCTACCAACAT+CGG - chr4_1:23301842-23301861 Msa0540640:intron 45.0%
CTTATTAGGAGCTCCGATGT+TGG + chr4_1:23301858-23301877 None:intergenic 45.0%
CAAAATTGGTGTGCAAGTGG+AGG + chr4_1:23302188-23302207 None:intergenic 45.0%
TAAGGAGGGAACACTTAAGG+CGG - chr4_1:23302532-23302551 Msa0540640:intron 45.0%
!!! TTTTTTTATTAAAAAAAATC+AGG - chr4_1:23297342-23297361 Msa0540640:intron 5.0%
!! AAAAAATTAAGAAAATTAAA+CGG - chr4_1:23298963-23298982 Msa0540640:intron 5.0%
!!! TTATTTTTAATTTTGAATTA+AGG + chr4_1:23299645-23299664 None:intergenic 5.0%
GAATTGAGAACCCAGTGCAC+AGG - chr4_1:23295228-23295247 Msa0540640:CDS 50.0%
AAGTCACTTGCCTGTGCACT+GGG + chr4_1:23295241-23295260 None:intergenic 50.0%
AAAGTCACTTGCCTGTGCAC+TGG + chr4_1:23295242-23295261 None:intergenic 50.0%
! GGGGCTTCTAAAGAAGGCTA+AGG - chr4_1:23295277-23295296 Msa0540640:intron 50.0%
CTCTATGAACTCGCCACCAA+AGG - chr4_1:23295359-23295378 Msa0540640:intron 50.0%
TTGGATTTCATCCGCTACGC+TGG + chr4_1:23295578-23295597 None:intergenic 50.0%
CGTGCTTCAGTTACAGCTTC+AGG + chr4_1:23295882-23295901 None:intergenic 50.0%
! GTACCTGAGACCCTTTTGCA+AGG + chr4_1:23298436-23298455 None:intergenic 50.0%
GGCAGGTATTTGTTTGGAGG+AGG - chr4_1:23298993-23299012 Msa0540640:intron 50.0%
TGGAGGAGGATTAGGGACTA+TGG - chr4_1:23299007-23299026 Msa0540640:intron 50.0%
! AGTGTCTGGATTCTGGCTAC+TGG - chr4_1:23300213-23300232 Msa0540640:intron 50.0%
CAACAACAGTTAACTGCCGC+TGG - chr4_1:23300255-23300274 Msa0540640:intron 50.0%
CGGTAGTTAACTACTGCTGG+GGG - chr4_1:23300313-23300332 Msa0540640:intron 50.0%
GAAACCACGCGGTCATTTCA+TGG - chr4_1:23301367-23301386 Msa0540640:intron 50.0%
AAGTCCATGAAATGACCGCG+TGG + chr4_1:23301374-23301393 None:intergenic 50.0%
GTGGGAGTTTAGGAGAGAAG+GGG - chr4_1:23301757-23301776 Msa0540640:intron 50.0%
! CCGATGTTGGTAGATTCCCA+AGG + chr4_1:23301845-23301864 None:intergenic 50.0%
GGGTCACCACTGAATAGACA+AGG - chr4_1:23302330-23302349 Msa0540640:intron 50.0%
!! GACTTTCTGTAAGCGCCGAG+CGG - chr4_1:23295256-23295275 Msa0540640:CDS 55.0%
!! ACTTTCTGTAAGCGCCGAGC+GGG - chr4_1:23295257-23295276 Msa0540640:CDS 55.0%
! CCTTCTTTAGAAGCCCCGCT+CGG + chr4_1:23295274-23295293 None:intergenic 55.0%
AGCAGCGAGTGTCTGGATTC+TGG - chr4_1:23300206-23300225 Msa0540640:intron 55.0%
!! TTAACAACCGCTGGCTCCAG+CGG + chr4_1:23300274-23300293 None:intergenic 55.0%
ACAGCCACCGCTTAGCACAA+CGG - chr4_1:23300293-23300312 Msa0540640:intron 55.0%
ACTACCGTTGTGCTAAGCGG+TGG + chr4_1:23300300-23300319 None:intergenic 55.0%
! AGAGGTGGTGGTCATGACGA+AGG + chr4_1:23300940-23300959 None:intergenic 55.0%
CTCGCGGGAAGGTTCAGCTA+AGG - chr4_1:23295204-23295223 Msa0540640:CDS 60.0%
!! CTTTCTGTAAGCGCCGAGCG+GGG - chr4_1:23295258-23295277 Msa0540640:CDS 60.0%
! CCGAGCGGGGCTTCTAAAGA+AGG - chr4_1:23295271-23295290 Msa0540640:CDS 60.0%
TTAACTGCCGCTGGAGCCAG+CGG - chr4_1:23300264-23300283 Msa0540640:intron 60.0%
CGGTGGCTGTTAACAACCGC+TGG + chr4_1:23300283-23300302 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 23295200 23302779 23295200 ID=Msa0540640;Name=Msa0540640
chr4_1 mRNA 23295200 23302779 23295200 ID=Msa0540640-mRNA-1;Parent=Msa0540640;Name=Msa0540640-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|1|1|7|0|202
chr4_1 exon 23302598 23302779 23302598 ID=Msa0540640-mRNA-1:exon:6464;Parent=Msa0540640-mRNA-1
chr4_1 exon 23302065 23302152 23302065 ID=Msa0540640-mRNA-1:exon:6463;Parent=Msa0540640-mRNA-1
chr4_1 exon 23299528 23299589 23299528 ID=Msa0540640-mRNA-1:exon:6462;Parent=Msa0540640-mRNA-1
chr4_1 exon 23298882 23298981 23298882 ID=Msa0540640-mRNA-1:exon:6461;Parent=Msa0540640-mRNA-1
chr4_1 exon 23298687 23298728 23298687 ID=Msa0540640-mRNA-1:exon:6460;Parent=Msa0540640-mRNA-1
chr4_1 exon 23295402 23295443 23295402 ID=Msa0540640-mRNA-1:exon:6459;Parent=Msa0540640-mRNA-1
chr4_1 exon 23295200 23295292 23295200 ID=Msa0540640-mRNA-1:exon:6458;Parent=Msa0540640-mRNA-1
chr4_1 CDS 23302598 23302779 23302598 ID=Msa0540640-mRNA-1:cds;Parent=Msa0540640-mRNA-1
chr4_1 CDS 23302065 23302152 23302065 ID=Msa0540640-mRNA-1:cds;Parent=Msa0540640-mRNA-1
chr4_1 CDS 23299528 23299589 23299528 ID=Msa0540640-mRNA-1:cds;Parent=Msa0540640-mRNA-1
chr4_1 CDS 23298882 23298981 23298882 ID=Msa0540640-mRNA-1:cds;Parent=Msa0540640-mRNA-1
chr4_1 CDS 23298687 23298728 23298687 ID=Msa0540640-mRNA-1:cds;Parent=Msa0540640-mRNA-1
chr4_1 CDS 23295402 23295443 23295402 ID=Msa0540640-mRNA-1:cds;Parent=Msa0540640-mRNA-1
chr4_1 CDS 23295200 23295292 23295200 ID=Msa0540640-mRNA-1:cds;Parent=Msa0540640-mRNA-1
Gene Sequence

>Msa0540640

ATGGCTCGCGGGAAGGTTCAGCTAAGGAGAATTGAGAACCCAGTGCACAGGCAAGTGACTTTCTGTAAGCGCCGAGCGGGGCTTCTAAAGAAGGCTAAGGAGCTCTCTGTGCTTTGCGATGCTGAAATTGGTCTTGTCATTTTCTCCGCTCATGGAAAGCTCTATGAACTCGCCACCAAAGGAACCATGCAAGGGCTAATAGAGAAGTACTTGAAGTTCACACGAGGGACTCAACCTGAAGCTGTAACTGAAGCACGTCCTCTTGTATTGGATGCTAAAGAGGAAACCAATGTGCTCAAGCAAGAGATCGATACCTTGCAAAAGGGTCTCAGGTATTTGTTTGGAGGAGGATTAGGGACTATGGCAATGGATGAGTTGCAAGTTCTTGAAAAGAACCTCGAAATCTGGATGTATAATGTTCGCTCAATGAAGATGAACATTATGTCACAAGAAATCCAAACTTTGAGGGATAAGGAGGGAACACTTAAGGCGGCAAATAAGTATCTCCATGATTTGGTGTTGGAGAATACTACTGTCACTAACTTTGTTCCATTTGCTACTGATACTTCGTTCCCACTAATTATACAAGATGGGATTTTTGAACTCTAG
Protein sequence

>Msa0540640

MARGKVQLRRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLVIFSAHGKLYELATKGTMQGLIEKYLKFTRGTQPEAVTEARPLVLDAKEETNVLKQEIDTLQKGLRYLFGGGLGTMAMDELQVLEKNLEIWMYNVRSMKMNIMSQEIQTLRDKEGTLKAANKYLHDLVLENTTVTNFVPFATDTSFPLIIQDGIFEL*