Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0636660 | XP_024638163.1 | 91.842 | 380 | 14 | 2 | 1 | 371 | 1 | 372 | 0.0 | 712 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0636660 | sp|Q9LDC0|FKB42_ARATH | 65.092 | 381 | 106 | 7 | 1 | 370 | 1 | 365 | 4.67e-171 | 484 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0636660 | G7JTJ9 | 91.842 | 380 | 14 | 2 | 1 | 371 | 1 | 372 | 0.0 | 712 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0629650 | Msa0636660 | 0.801113 | 1.049507e-48 | -8.615850e-47 |
| Msa0596800 | Msa0636660 | 0.841579 | 4.361640e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0636660 | MtrunA17_Chr4g0019501 | 91.842 | 380 | 14 | 2 | 1 | 371 | 1 | 372 | 0.0 | 712 |
| Msa0636660 | MtrunA17_Chr8g0339141 | 36.481 | 233 | 142 | 4 | 99 | 330 | 320 | 547 | 6.09e-33 | 129 |
| Msa0636660 | MtrunA17_Chr7g0234801 | 34.468 | 235 | 149 | 2 | 99 | 333 | 313 | 542 | 4.54e-32 | 126 |
| Msa0636660 | MtrunA17_Chr8g0377771 | 35.776 | 232 | 143 | 3 | 100 | 330 | 317 | 543 | 6.45e-32 | 126 |
| Msa0636660 | MtrunA17_Chr1g0152361 | 31.290 | 310 | 189 | 10 | 37 | 337 | 85 | 379 | 7.71e-28 | 112 |
| Msa0636660 | MtrunA17_Chr7g0255551 | 31.278 | 227 | 149 | 4 | 100 | 326 | 299 | 518 | 1.85e-20 | 92.8 |
| Msa0636660 | MtrunA17_Chr4g0027201 | 31.148 | 244 | 144 | 8 | 100 | 334 | 324 | 552 | 3.09e-19 | 89.4 |
| Msa0636660 | MtrunA17_Chr8g0338001 | 32.051 | 156 | 99 | 4 | 99 | 253 | 226 | 375 | 1.16e-14 | 74.7 |
| Msa0636660 | MtrunA17_Chr8g0338631 | 31.852 | 135 | 85 | 4 | 120 | 253 | 1 | 129 | 2.95e-12 | 63.9 |
| Msa0636660 | MtrunA17_Chr7g0237741 | 30.303 | 132 | 82 | 1 | 180 | 311 | 92 | 213 | 9.08e-12 | 65.1 |
| Msa0636660 | MtrunA17_Chr4g0025271 | 31.250 | 160 | 102 | 1 | 150 | 309 | 70 | 221 | 8.87e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0636660 | AT3G21640.1 | 65.092 | 381 | 106 | 7 | 1 | 370 | 1 | 365 | 4.75e-172 | 484 |
| Msa0636660 | AT5G48570.1 | 32.566 | 304 | 173 | 9 | 49 | 336 | 274 | 561 | 1.18e-29 | 120 |
| Msa0636660 | AT3G25230.2 | 34.052 | 232 | 147 | 3 | 100 | 330 | 319 | 545 | 2.57e-29 | 119 |
| Msa0636660 | AT3G25230.1 | 31.597 | 288 | 171 | 7 | 55 | 330 | 272 | 545 | 2.58e-29 | 119 |
| Msa0636660 | AT3G54010.2 | 31.707 | 246 | 140 | 8 | 100 | 334 | 232 | 460 | 8.42e-21 | 94.4 |
| Msa0636660 | AT3G54010.1 | 31.707 | 246 | 140 | 8 | 100 | 334 | 322 | 550 | 8.58e-21 | 94.4 |
| Msa0636660 | AT1G58450.1 | 32.716 | 162 | 98 | 5 | 174 | 331 | 1 | 155 | 1.19e-12 | 65.9 |
Find 102 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTAACAGACTTGTTATT+TGG | 0.191687 | 4_3:-27539516 | Msa0636660:intron |
| GGATGGAAATGTTCTGTTTC+AGG | 0.222182 | 4_3:-27539153 | Msa0636660:CDS |
| GAGATCTATAAAGGAATATT+TGG | 0.225703 | 4_3:-27537387 | Msa0636660:CDS |
| GCAATTTGAAGGCTTTATTT+AGG | 0.233759 | 4_3:-27537560 | Msa0636660:CDS |
| TCAACTTCAGAATCAACTTT+TGG | 0.240967 | 4_3:+27540798 | None:intergenic |
| TGTGGTACTGGTTCAGGTCT+TGG | 0.262790 | 4_3:+27537363 | None:intergenic |
| CTTGCAATTGCTTTATCTTC+AGG | 0.277406 | 4_3:+27537462 | None:intergenic |
| GACTTCATGTTCCAGTTGTT+TGG | 0.278250 | 4_3:-27538950 | Msa0636660:CDS |
| AGGTTCAAGGCTAATTTATT+TGG | 0.283449 | 4_3:+27536913 | None:intergenic |
| TCTGCCATTGGTGGAACATT+TGG | 0.294220 | 4_3:+27539353 | None:intergenic |
| GGTTACAAAACAAATTATTA+AGG | 0.302747 | 4_3:-27540760 | Msa0636660:CDS |
| TTGGTAGCAATTACAAGGTT+AGG | 0.313686 | 4_3:+27536966 | None:intergenic |
| CCAGTTGTTTGGGAAGTATA+GGG | 0.330723 | 4_3:-27538939 | Msa0636660:CDS |
| AAATGACTGGCTTGGGCATT+GGG | 0.332295 | 4_3:-27539460 | Msa0636660:CDS |
| CTGCGTGTGAGCTGGGAATT+AGG | 0.336747 | 4_3:-27539404 | Msa0636660:CDS |
| GTTTGGGAAGTATAGGGATA+TGG | 0.339954 | 4_3:-27538933 | Msa0636660:CDS |
| ACTTCATGTTCCAGTTGTTT+GGG | 0.360386 | 4_3:-27538949 | Msa0636660:CDS |
| CCCTATACTTCCCAAACAAC+TGG | 0.377001 | 4_3:+27538939 | None:intergenic |
| GGAATTGGTTCATATTTGTT+TGG | 0.380589 | 4_3:-27537335 | Msa0636660:CDS |
| GTTTATGAAGTTGAGCTCAT+TGG | 0.387560 | 4_3:-27539326 | Msa0636660:CDS |
| GGACTACTCAATAATTCTTC+AGG | 0.387637 | 4_3:+27540822 | None:intergenic |
| AAGCAGAAGGAGATCTATAA+AGG | 0.387775 | 4_3:-27537396 | Msa0636660:CDS |
| TCCAGTTGTTTGGGAAGTAT+AGG | 0.389067 | 4_3:-27538940 | Msa0636660:CDS |
| GAGCGTTGCTGCGTGTGAGC+TGG | 0.407608 | 4_3:-27539412 | Msa0636660:CDS |
| AAAATGTTGTAGCCTTTCAT+AGG | 0.416050 | 4_3:+27537184 | None:intergenic |
| GTGAGCTGGGAATTAGGATA+TGG | 0.419661 | 4_3:-27539398 | Msa0636660:CDS |
| TTTCCTATTACCATCTCAAT+TGG | 0.421411 | 4_3:+27540285 | None:intergenic |
| CATATTTGTTTGGCAGTGGT+TGG | 0.426113 | 4_3:-27537325 | Msa0636660:CDS |
| GAAATGACTGGCTTGGGCAT+TGG | 0.428307 | 4_3:-27539461 | Msa0636660:CDS |
| TGACTGTAGAGGAACGGATT+GGG | 0.429854 | 4_3:-27539196 | Msa0636660:CDS |
| AAGAAAGAAATGACTGGCTT+GGG | 0.441743 | 4_3:-27539467 | Msa0636660:CDS |
| GAAAGTACTGAATATGCAAA+AGG | 0.441865 | 4_3:-27540852 | Msa0636660:CDS |
| ACCTTGTAATTGCTACCAAC+AGG | 0.451469 | 4_3:-27536962 | Msa0636660:three_prime_UTR |
| TAAACTTTAGAGAAGGTTCA+AGG | 0.455714 | 4_3:+27536900 | None:intergenic |
| ATGTCAGGCCATAGCTTACA+TGG | 0.460197 | 4_3:-27538978 | Msa0636660:intron |
| TGGTAGCAATTACAAGGTTA+GGG | 0.460657 | 4_3:+27536967 | None:intergenic |
| GAAGAAAGAAATGACTGGCT+TGG | 0.461382 | 4_3:-27539468 | Msa0636660:CDS |
| GGCCATGCAACAGTATGAAA+TGG | 0.476558 | 4_3:-27539114 | Msa0636660:intron |
| AAAGTACTGAATATGCAAAA+GGG | 0.478686 | 4_3:-27540851 | Msa0636660:CDS |
| CAGTACCACAGAAAAGGAAT+TGG | 0.480228 | 4_3:-27537350 | Msa0636660:CDS |
| TTGGGCAGACAGATGTTGCC+AGG | 0.480432 | 4_3:-27537515 | Msa0636660:CDS |
| GGGGTGGCAAGCATGAAAGC+TGG | 0.481889 | 4_3:-27539440 | Msa0636660:CDS |
| GAAGTATAGGGATATGGCTC+TGG | 0.484336 | 4_3:-27538927 | Msa0636660:CDS |
| GGCTTTATTTAGGAGAGGTA+AGG | 0.490198 | 4_3:-27537550 | Msa0636660:CDS |
| GACAGGCCGCCGTGTTAAGA+TGG | 0.492108 | 4_3:+27538888 | None:intergenic |
| CTGAACCAGTACCACAGAAA+AGG | 0.492954 | 4_3:-27537356 | Msa0636660:CDS |
| GGGTGGCAAGCATGAAAGCT+GGG | 0.494339 | 4_3:-27539439 | Msa0636660:CDS |
| GGTTCATATTTGTTTGGCAG+TGG | 0.498991 | 4_3:-27537329 | Msa0636660:CDS |
| TCATAAACTAAATCTGCCAT+TGG | 0.508037 | 4_3:+27539341 | None:intergenic |
| TGAGGATGAGAGCAATTTGA+AGG | 0.509951 | 4_3:-27537571 | Msa0636660:CDS |
| ATGACTGTAGAGGAACGGAT+TGG | 0.522055 | 4_3:-27539197 | Msa0636660:CDS |
| AATTCAGTTGTTGAACATCA+AGG | 0.527290 | 4_3:-27537242 | Msa0636660:three_prime_UTR |
| GCCTGTTGGTAGCAATTACA+AGG | 0.529193 | 4_3:+27536961 | None:intergenic |
| AACGGATTGGGGCAGCAGAT+CGG | 0.529421 | 4_3:-27539184 | Msa0636660:CDS |
| TAAACTAAATCTGCCATTGG+TGG | 0.530780 | 4_3:+27539344 | None:intergenic |
| AGCGTTGCTGCGTGTGAGCT+GGG | 0.534499 | 4_3:-27539411 | Msa0636660:CDS |
| GGTAAGGCTAGAGCAGCACT+TGG | 0.543948 | 4_3:-27537534 | Msa0636660:CDS |
| AAGCATGTTGAATACTTGGA+AGG | 0.544025 | 4_3:+27540720 | None:intergenic |
| GTCATCTCCCATGTAAGCTA+TGG | 0.545323 | 4_3:+27538970 | None:intergenic |
| GGCAGCAGATCGGAGAAAGA+TGG | 0.546425 | 4_3:-27539174 | Msa0636660:CDS |
| AGTTGAAGTTCTTCATGAGA+AGG | 0.548105 | 4_3:-27540781 | Msa0636660:CDS |
| ACAAAACAAATTATTAAGGA+AGG | 0.552128 | 4_3:-27540756 | Msa0636660:CDS |
| TAAATTTGAAGATACATGGC+AGG | 0.555459 | 4_3:-27540316 | Msa0636660:CDS |
| GCGGTTCAGCTTAATCAGAC+AGG | 0.561365 | 4_3:+27538871 | None:intergenic |
| ATGTTGTAGCCTTTCATAGG+TGG | 0.562072 | 4_3:+27537187 | None:intergenic |
| GAATTAGGATATGGAAAGGA+AGG | 0.562161 | 4_3:-27539389 | Msa0636660:CDS |
| CAGGGCGTGGTCTGAGAACA+CGG | 0.563793 | 4_3:-27540343 | Msa0636660:CDS |
| GAAACTTACGTTGACCAGAT+CGG | 0.566358 | 4_3:+27541271 | None:intergenic |
| AACCGCTATGAAGAAGCTAT+AGG | 0.568196 | 4_3:-27538854 | Msa0636660:CDS |
| GCTAATTTATTTGGTAAACA+AGG | 0.569623 | 4_3:+27536922 | None:intergenic |
| GACTGGCTTGGGCATTGGGG+TGG | 0.573654 | 4_3:-27539456 | Msa0636660:CDS |
| CAAATTATTAAGGAAGGTCA+TGG | 0.574339 | 4_3:-27540750 | Msa0636660:CDS |
| AACCATTTCATACTGTTGCA+TGG | 0.576813 | 4_3:+27539112 | None:intergenic |
| ACAGAGAAGAAAGAAATGAC+TGG | 0.578132 | 4_3:-27539473 | Msa0636660:CDS |
| GACTGTAGAGGAACGGATTG+GGG | 0.579307 | 4_3:-27539195 | Msa0636660:CDS |
| TTGAAGGCTTTATTTAGGAG+AGG | 0.585733 | 4_3:-27537555 | Msa0636660:CDS |
| AGCATAAATTTGAAGATACA+TGG | 0.586003 | 4_3:-27540320 | Msa0636660:CDS |
| CTGGGAATTAGGATATGGAA+AGG | 0.597900 | 4_3:-27539393 | Msa0636660:CDS |
| GCAGATCGGAGAAAGATGGA+TGG | 0.599142 | 4_3:-27539170 | Msa0636660:CDS |
| GCCGCCGTGTTAAGATGGCA+TGG | 0.599939 | 4_3:+27538893 | None:intergenic |
| AAATAAATAAACTTTAGAGA+AGG | 0.606685 | 4_3:+27536893 | None:intergenic |
| GTTTCAGGAAAATAAACTAG+AGG | 0.610535 | 4_3:-27539138 | Msa0636660:CDS |
| TCAGGAAAATAAACTAGAGG+AGG | 0.614029 | 4_3:-27539135 | Msa0636660:CDS |
| AAGTACTGAATATGCAAAAG+GGG | 0.616531 | 4_3:-27540850 | Msa0636660:CDS |
| TATGTGCATCCACCTATGAA+AGG | 0.617546 | 4_3:-27537196 | Msa0636660:three_prime_UTR |
| AGCTATTTATCAAAAGCAGA+AGG | 0.618624 | 4_3:-27537409 | Msa0636660:CDS |
| GTCCTATAGCTTCTTCATAG+CGG | 0.623004 | 4_3:+27538852 | None:intergenic |
| CATGTCAGTTACATGCCTGT+TGG | 0.625735 | 4_3:+27536947 | None:intergenic |
| AACAATAGTCGATGCAACAA+TGG | 0.626001 | 4_3:+27537219 | None:intergenic |
| GTAAGGCTAGAGCAGCACTT+GGG | 0.626696 | 4_3:-27537533 | Msa0636660:CDS |
| AAACTTGCAGGTATTAAGTG+AGG | 0.627657 | 4_3:-27537589 | Msa0636660:intron |
| AATGACTGGCTTGGGCATTG+GGG | 0.631535 | 4_3:-27539459 | Msa0636660:CDS |
| GTGATATGACTGTAGAGGAA+CGG | 0.631871 | 4_3:-27539202 | Msa0636660:CDS |
| TCGCAGTGATATGACTGTAG+AGG | 0.641089 | 4_3:-27539207 | Msa0636660:CDS |
| TGGGCAGACAGATGTTGCCA+GGG | 0.643676 | 4_3:-27537514 | Msa0636660:CDS |
| GAATCCATGCCATCTTAACA+CGG | 0.645723 | 4_3:-27538897 | Msa0636660:CDS |
| GGAGCAACGACCAATTGAGA+TGG | 0.655756 | 4_3:-27540295 | Msa0636660:intron |
| GGTGGCAAGCATGAAAGCTG+GGG | 0.672895 | 4_3:-27539438 | Msa0636660:CDS |
| TGTCAGGCCATAGCTTACAT+GGG | 0.675965 | 4_3:-27538977 | Msa0636660:intron |
| TCTCAACCACAATCAAAACC+AGG | 0.685386 | 4_3:-27541124 | Msa0636660:intron |
| TGTCAAACACGATTACTCTG+TGG | 0.727679 | 4_3:+27537079 | None:intergenic |
| TCCATGCCATCTTAACACGG+CGG | 0.771881 | 4_3:-27538894 | Msa0636660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAATATAAAATTAAT+GGG | + | chr4_3:27537024-27537043 | None:intergenic | 0.0% |
| !! | AAAAAAAAATATAAAATTAA+TGG | + | chr4_3:27537025-27537044 | None:intergenic | 0.0% |
| !! | CTATAATAAAATTATAATCA+TGG | - | chr4_3:27539867-27539886 | Msa0636660:intron | 10.0% |
| !!! | TGTATATTTATTTTAGTTCA+TGG | - | chr4_3:27538157-27538176 | Msa0636660:intron | 15.0% |
| !!! | TAAAGAAATATTTTGATAGA+GGG | + | chr4_3:27539530-27539549 | None:intergenic | 15.0% |
| !!! | TAAATTGTTATAGTATTTTC+TGG | - | chr4_3:27540518-27540537 | Msa0636660:intron | 15.0% |
| !! | ATAAATGGAAATTAATTACC+TGG | + | chr4_3:27537093-27537112 | None:intergenic | 20.0% |
| !! | GGTTACAAAACAAATTATTA+AGG | - | chr4_3:27537436-27537455 | Msa0636660:CDS | 20.0% |
| !! | ACAAAACAAATTATTAAGGA+AGG | - | chr4_3:27537440-27537459 | Msa0636660:CDS | 20.0% |
| !! | TTCAACAAGAGAAAATAAAA+AGG | + | chr4_3:27537786-27537805 | None:intergenic | 20.0% |
| !! | TTATAAACTGGTAATAGAAA+TGG | - | chr4_3:27538040-27538059 | Msa0636660:intron | 20.0% |
| !!! | AGAGTAAATTTTCATTTTAG+TGG | - | chr4_3:27538078-27538097 | Msa0636660:intron | 20.0% |
| !! | TAAAATAAATATACACTCAG+GGG | + | chr4_3:27538152-27538171 | None:intergenic | 20.0% |
| !! | CTAAAATAAATATACACTCA+GGG | + | chr4_3:27538153-27538172 | None:intergenic | 20.0% |
| !! | ACTAAAATAAATATACACTC+AGG | + | chr4_3:27538154-27538173 | None:intergenic | 20.0% |
| !!! | CAGAGATTTTTATGTAATTT+TGG | - | chr4_3:27538239-27538258 | Msa0636660:intron | 20.0% |
| !! | CTTGATAAAAGTTTATAAAG+AGG | - | chr4_3:27538323-27538342 | Msa0636660:intron | 20.0% |
| !! | TACTATGTAAATAAGCATTT+CGG | - | chr4_3:27539415-27539434 | Msa0636660:CDS | 20.0% |
| !!! | ATTGGTCTTTATTAATGTAA+GGG | + | chr4_3:27539498-27539517 | None:intergenic | 20.0% |
| !!! | CTAAAGAAATATTTTGATAG+AGG | + | chr4_3:27539531-27539550 | None:intergenic | 20.0% |
| !!! | ATTCCTTTTTATCTTATTGA+AGG | - | chr4_3:27539975-27539994 | Msa0636660:intron | 20.0% |
| !!! | TTCCTTTTTATCTTATTGAA+GGG | - | chr4_3:27539976-27539995 | Msa0636660:intron | 20.0% |
| !! | TAACAATTTACAAGTATGTT+TGG | + | chr4_3:27540508-27540527 | None:intergenic | 20.0% |
| !! | AAATGTGGTTATGAATTTTC+CGG | + | chr4_3:27536995-27537014 | None:intergenic | 25.0% |
| ! | ATTAATGGGAAAATGAAATG+TGG | + | chr4_3:27537010-27537029 | None:intergenic | 25.0% |
| !!! | ATTTTTTTTTTCCAGCAACA+TGG | - | chr4_3:27537035-27537054 | Msa0636660:three_prime_UTR | 25.0% |
| !! | TTTTCTTGACCTACAAAATA+AGG | + | chr4_3:27537302-27537321 | None:intergenic | 25.0% |
| !!! | AAAGTACTGAATATGCAAAA+GGG | - | chr4_3:27537345-27537364 | Msa0636660:CDS | 25.0% |
| ! | AACAAAAGAAAATTTCCTCA+CGG | + | chr4_3:27537655-27537674 | None:intergenic | 25.0% |
| ! | ATTCATAATTATGACCTGTA+TGG | - | chr4_3:27537810-27537829 | Msa0636660:intron | 25.0% |
| ! | AGCATAAATTTGAAGATACA+TGG | - | chr4_3:27537876-27537895 | Msa0636660:intron | 25.0% |
| !!! | ATGCTTGAAGTTTAAAGTTT+TGG | - | chr4_3:27537938-27537957 | Msa0636660:intron | 25.0% |
| ! | AAAGAAATCCAATTGATCAA+TGG | + | chr4_3:27537975-27537994 | None:intergenic | 25.0% |
| ! | ACAATTTAGAGAATAGATGT+AGG | + | chr4_3:27538008-27538027 | None:intergenic | 25.0% |
| !! | TGATTTTCGTGTTTATAAAC+TGG | - | chr4_3:27538028-27538047 | Msa0636660:intron | 25.0% |
| ! | ACTATCAAAAGAGATATTTG+AGG | - | chr4_3:27538189-27538208 | Msa0636660:intron | 25.0% |
| !!! | ATGTAATTTTGGTACATTCA+AGG | - | chr4_3:27538250-27538269 | Msa0636660:intron | 25.0% |
| ! | GATAAAAGTTTATAAAGAGG+AGG | - | chr4_3:27538326-27538345 | Msa0636660:intron | 25.0% |
| ! | GATACAAGACTAATATTTAC+AGG | + | chr4_3:27538474-27538493 | None:intergenic | 25.0% |
| !!! | TCTTTAACAGACTTGTTATT+TGG | - | chr4_3:27538680-27538699 | Msa0636660:intron | 25.0% |
| !! | GTTTTCATTAAATTGTTGCA+TGG | - | chr4_3:27538916-27538935 | Msa0636660:CDS | 25.0% |
| ! | TTATAGTGAGTAAAATTCAC+AGG | - | chr4_3:27538959-27538978 | Msa0636660:CDS | 25.0% |
| ! | TATAGTGAGTAAAATTCACA+GGG | - | chr4_3:27538960-27538979 | Msa0636660:CDS | 25.0% |
| !! | AATTGCTGAAGAAAATTTTG+AGG | + | chr4_3:27539442-27539461 | None:intergenic | 25.0% |
| !!! | TTGCTATTTCACAAATTTGA+GGG | + | chr4_3:27539469-27539488 | None:intergenic | 25.0% |
| !!! | TTTGCTATTTCACAAATTTG+AGG | + | chr4_3:27539470-27539489 | None:intergenic | 25.0% |
| !!! | GATTGGTCTTTATTAATGTA+AGG | + | chr4_3:27539499-27539518 | None:intergenic | 25.0% |
| ! | TGGTAGATAATCAAATTTGA+AGG | + | chr4_3:27539631-27539650 | None:intergenic | 25.0% |
| ! | CAAATTTGATTATCTACCAT+TGG | - | chr4_3:27539632-27539651 | Msa0636660:intron | 25.0% |
| !!! | TAAATTGTTTTACCGAGTTT+TGG | - | chr4_3:27539834-27539853 | Msa0636660:intron | 25.0% |
| !!! | AAATTGTTTTACCGAGTTTT+GGG | - | chr4_3:27539835-27539854 | Msa0636660:intron | 25.0% |
| ! | TTCCCTTCAATAAGATAAAA+AGG | + | chr4_3:27539981-27540000 | None:intergenic | 25.0% |
| ! | ATTTCCCTTGACTAAAAATA+TGG | + | chr4_3:27540104-27540123 | None:intergenic | 25.0% |
| ! | GAAAAACTTGAATCAAACAT+GGG | + | chr4_3:27540260-27540279 | None:intergenic | 25.0% |
| ! | AGAAAAACTTGAATCAAACA+TGG | + | chr4_3:27540261-27540280 | None:intergenic | 25.0% |
| ! | ACTAAATAAAAGTGAGAATG+AGG | + | chr4_3:27540423-27540442 | None:intergenic | 25.0% |
| ! | AGATATAGAATCATGTTACA+AGG | + | chr4_3:27540553-27540572 | None:intergenic | 25.0% |
| ! | GAGATCTATAAAGGAATATT+TGG | - | chr4_3:27540809-27540828 | Msa0636660:CDS | 25.0% |
| !! | ATTTTATCTATGCTTGATGT+TGG | - | chr4_3:27541066-27541085 | Msa0636660:intron | 25.0% |
| !! | TTTGTTCATAAGCATTTTGT+GGG | - | chr4_3:27541171-27541190 | Msa0636660:intron | 25.0% |
| ! | GCTAATTTATTTGGTAAACA+AGG | + | chr4_3:27541277-27541296 | None:intergenic | 25.0% |
| !!! | TAATTACCTGGTTTTGATTG+TGG | + | chr4_3:27537081-27537100 | None:intergenic | 30.0% |
| GTATCACATGAGTGAATAAA+TGG | + | chr4_3:27537108-27537127 | None:intergenic | 30.0% | |
| TCGAATTTCATGTATGATTG+AGG | - | chr4_3:27537273-27537292 | Msa0636660:CDS | 30.0% | |
| !!! | TTGAGGAAACCTTATTTTGT+AGG | - | chr4_3:27537290-27537309 | Msa0636660:CDS | 30.0% |
| !! | GAAAGTACTGAATATGCAAA+AGG | - | chr4_3:27537344-27537363 | Msa0636660:CDS | 30.0% |
| !! | AAGTACTGAATATGCAAAAG+GGG | - | chr4_3:27537346-27537365 | Msa0636660:CDS | 30.0% |
| ! | TCAACTTCAGAATCAACTTT+TGG | + | chr4_3:27537401-27537420 | None:intergenic | 30.0% |
| CAAATTATTAAGGAAGGTCA+TGG | - | chr4_3:27537446-27537465 | Msa0636660:CDS | 30.0% | |
| ! | ACAAAAGCATGTTGAATACT+TGG | + | chr4_3:27537483-27537502 | None:intergenic | 30.0% |
| ! | ATTCAACATGCTTTTGTAAG+TGG | - | chr4_3:27537486-27537505 | Msa0636660:CDS | 30.0% |
| ! | TTTGAATGACCCAAATGTTT+TGG | - | chr4_3:27537625-27537644 | Msa0636660:intron | 30.0% |
| !! | TCTTTTGTTTAGACTGAATG+TGG | - | chr4_3:27537666-27537685 | Msa0636660:intron | 30.0% |
| !! | CTTTTGTTTAGACTGAATGT+GGG | - | chr4_3:27537667-27537686 | Msa0636660:intron | 30.0% |
| ATTATGACCTGTATGGTTTA+TGG | - | chr4_3:27537817-27537836 | Msa0636660:intron | 30.0% | |
| TAAATTTGAAGATACATGGC+AGG | - | chr4_3:27537880-27537899 | Msa0636660:intron | 30.0% | |
| TTTCCTATTACCATCTCAAT+TGG | + | chr4_3:27537914-27537933 | None:intergenic | 30.0% | |
| ATTGAGATGGTAATAGGAAA+AGG | - | chr4_3:27537914-27537933 | Msa0636660:intron | 30.0% | |
| TGTCATTGTGTTGAAATTTG+GGG | + | chr4_3:27538393-27538412 | None:intergenic | 30.0% | |
| CTGTCATTGTGTTGAAATTT+GGG | + | chr4_3:27538394-27538413 | None:intergenic | 30.0% | |
| !!! | GACTTGTTATTTGGTTTTGA+TGG | - | chr4_3:27538689-27538708 | Msa0636660:intron | 30.0% |
| TCATAAACTAAATCTGCCAT+TGG | + | chr4_3:27538858-27538877 | None:intergenic | 30.0% | |
| ATTAAATTGTTGCATGGTCA+CGG | - | chr4_3:27538922-27538941 | Msa0636660:CDS | 30.0% | |
| GTTTCAGGAAAATAAACTAG+AGG | - | chr4_3:27539058-27539077 | Msa0636660:intron | 30.0% | |
| !! | GTTTGCTAAGTTGATTATCT+TGG | - | chr4_3:27539192-27539211 | Msa0636660:CDS | 30.0% |
| TCAATATGTAGGTCTTTCAT+CGG | + | chr4_3:27539570-27539589 | None:intergenic | 30.0% | |
| GAGTATAGAAGTCAATATGT+AGG | + | chr4_3:27539581-27539600 | None:intergenic | 30.0% | |
| !!! | TCTTGCCATATTTTTAGTCA+AGG | - | chr4_3:27540096-27540115 | Msa0636660:intron | 30.0% |
| !!! | CTTGCCATATTTTTAGTCAA+GGG | - | chr4_3:27540097-27540116 | Msa0636660:intron | 30.0% |
| ! | ATTTTTACCAAAGTGAGCTT+TGG | - | chr4_3:27540223-27540242 | Msa0636660:intron | 30.0% |
| TTAAAATTTCTGCGATTTCC+TGG | - | chr4_3:27540283-27540302 | Msa0636660:intron | 30.0% | |
| TAAAATTTCTGCGATTTCCT+GGG | - | chr4_3:27540284-27540303 | Msa0636660:intron | 30.0% | |
| AATGAGTGAATTATATCCCT+GGG | + | chr4_3:27540311-27540330 | None:intergenic | 30.0% | |
| AAATGAGTGAATTATATCCC+TGG | + | chr4_3:27540312-27540331 | None:intergenic | 30.0% | |
| TTATCATGGGAATGAAAAAG+CGG | + | chr4_3:27540338-27540357 | None:intergenic | 30.0% | |
| AATGTCTCACTCTTTATCAT+GGG | + | chr4_3:27540351-27540370 | None:intergenic | 30.0% | |
| AAATGTCTCACTCTTTATCA+TGG | + | chr4_3:27540352-27540371 | None:intergenic | 30.0% | |
| GGTAAGTGAAAAGTTATAGT+TGG | + | chr4_3:27540402-27540421 | None:intergenic | 30.0% | |
| TTTCAACAAATGACTTCTGT+TGG | + | chr4_3:27540590-27540609 | None:intergenic | 30.0% | |
| !! | GCAATTTGAAGGCTTTATTT+AGG | - | chr4_3:27540636-27540655 | Msa0636660:intron | 30.0% |
| AGCTATTTATCAAAAGCAGA+AGG | - | chr4_3:27540787-27540806 | Msa0636660:CDS | 30.0% | |
| ! | GGAATTGGTTCATATTTGTT+TGG | - | chr4_3:27540861-27540880 | Msa0636660:CDS | 30.0% |
| !!! | CATCTTTGTGCTTTTTTTCA+CGG | + | chr4_3:27540931-27540950 | None:intergenic | 30.0% |
| AATTCAGTTGTTGAACATCA+AGG | - | chr4_3:27540954-27540973 | Msa0636660:intron | 30.0% | |
| AAAATGTTGTAGCCTTTCAT+AGG | + | chr4_3:27541015-27541034 | None:intergenic | 30.0% | |
| ! | GTTTGTTCATAAGCATTTTG+TGG | - | chr4_3:27541170-27541189 | Msa0636660:intron | 30.0% |
| AGGTTCAAGGCTAATTTATT+TGG | + | chr4_3:27541286-27541305 | None:intergenic | 30.0% | |
| CCGGAGAAACAAAAATCTAA+GGG | + | chr4_3:27536976-27536995 | None:intergenic | 35.0% | |
| !! | CCCTTAGATTTTTGTTTCTC+CGG | - | chr4_3:27536973-27536992 | Msa0636660:three_prime_UTR | 35.0% |
| TCCGGAGAAACAAAAATCTA+AGG | + | chr4_3:27536977-27536996 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTCCAGCAACATGG+AGG | - | chr4_3:27537038-27537057 | Msa0636660:three_prime_UTR | 35.0% |
| GGACTACTCAATAATTCTTC+AGG | + | chr4_3:27537377-27537396 | None:intergenic | 35.0% | |
| ! | ACTTCAGAATCAACTTTTGG+AGG | + | chr4_3:27537398-27537417 | None:intergenic | 35.0% |
| AGTTGAAGTTCTTCATGAGA+AGG | - | chr4_3:27537415-27537434 | Msa0636660:CDS | 35.0% | |
| AAGCATGTTGAATACTTGGA+AGG | + | chr4_3:27537479-27537498 | None:intergenic | 35.0% | |
| CACGGTAAACCAAAACATTT+GGG | + | chr4_3:27537637-27537656 | None:intergenic | 35.0% | |
| TCACGGTAAACCAAAACATT+TGG | + | chr4_3:27537638-27537657 | None:intergenic | 35.0% | |
| !!! | AAATGTTTTGGTTTACCGTG+AGG | - | chr4_3:27537637-27537656 | Msa0636660:intron | 35.0% |
| ACGTGAAGCAAAACTGTATT+AGG | - | chr4_3:27537698-27537717 | Msa0636660:intron | 35.0% | |
| TCTTGTGTCCATTGATCAAT+TGG | - | chr4_3:27537964-27537983 | Msa0636660:intron | 35.0% | |
| TAGTGGCTTAATGTGTAAGA+CGG | - | chr4_3:27538095-27538114 | Msa0636660:intron | 35.0% | |
| ATTCAAGGACTACAGTGTAT+TGG | - | chr4_3:27538265-27538284 | Msa0636660:intron | 35.0% | |
| TTCAAGGACTACAGTGTATT+GGG | - | chr4_3:27538266-27538285 | Msa0636660:intron | 35.0% | |
| CTAACTCATCCTTACAAAAC+CGG | + | chr4_3:27538370-27538389 | None:intergenic | 35.0% | |
| GCTGTCATTGTGTTGAAATT+TGG | + | chr4_3:27538395-27538414 | None:intergenic | 35.0% | |
| ACAGAGAAGAAAGAAATGAC+TGG | - | chr4_3:27538723-27538742 | Msa0636660:intron | 35.0% | |
| !! | AAGAAAGAAATGACTGGCTT+GGG | - | chr4_3:27538729-27538748 | Msa0636660:intron | 35.0% |
| GAATTAGGATATGGAAAGGA+AGG | - | chr4_3:27538807-27538826 | Msa0636660:intron | 35.0% | |
| ! | TTTTCCAAATGTTCCACCAA+TGG | - | chr4_3:27538839-27538858 | Msa0636660:intron | 35.0% |
| TAAACTAAATCTGCCATTGG+TGG | + | chr4_3:27538855-27538874 | None:intergenic | 35.0% | |
| GTTTATGAAGTTGAGCTCAT+TGG | - | chr4_3:27538870-27538889 | Msa0636660:CDS | 35.0% | |
| TCAGGAAAATAAACTAGAGG+AGG | - | chr4_3:27539061-27539080 | Msa0636660:intron | 35.0% | |
| AACCATTTCATACTGTTGCA+TGG | + | chr4_3:27539087-27539106 | None:intergenic | 35.0% | |
| TGATTATCTTGGTTCATGTC+AGG | - | chr4_3:27539203-27539222 | Msa0636660:CDS | 35.0% | |
| ACTTCATGTTCCAGTTGTTT+GGG | - | chr4_3:27539247-27539266 | Msa0636660:intron | 35.0% | |
| TATCTACCATTGGAGTTCAA+TGG | - | chr4_3:27539642-27539661 | Msa0636660:intron | 35.0% | |
| TTTAGTCCATTGAACTCCAA+TGG | + | chr4_3:27539651-27539670 | None:intergenic | 35.0% | |
| ! | TTATGTCCTTGGAGTTCTAA+GGG | + | chr4_3:27539711-27539730 | None:intergenic | 35.0% |
| TTTATGTCCTTGGAGTTCTA+AGG | + | chr4_3:27539712-27539731 | None:intergenic | 35.0% | |
| ! | TCAAAGTCATGCTGTTTGAT+TGG | - | chr4_3:27539765-27539784 | Msa0636660:intron | 35.0% |
| TATGGCAAGATATGCTTAGT+AGG | + | chr4_3:27540086-27540105 | None:intergenic | 35.0% | |
| TTACAATCCAAAGCTCACTT+TGG | + | chr4_3:27540233-27540252 | None:intergenic | 35.0% | |
| TAAAGAGTGAGACATTTCCA+TGG | - | chr4_3:27540355-27540374 | Msa0636660:intron | 35.0% | |
| AAAGAGTGAGACATTTCCAT+GGG | - | chr4_3:27540356-27540375 | Msa0636660:intron | 35.0% | |
| TGAAAAGTTATAGTTGGCTG+AGG | + | chr4_3:27540396-27540415 | None:intergenic | 35.0% | |
| ! | AGTCATTTGTTGAAACTTGC+AGG | - | chr4_3:27540595-27540614 | Msa0636660:intron | 35.0% |
| AAACTTGCAGGTATTAAGTG+AGG | - | chr4_3:27540607-27540626 | Msa0636660:intron | 35.0% | |
| !! | TTGAAGGCTTTATTTAGGAG+AGG | - | chr4_3:27540641-27540660 | Msa0636660:intron | 35.0% |
| !! | AGCTTTTAGAAAATCTTCCC+TGG | + | chr4_3:27540702-27540721 | None:intergenic | 35.0% |
| CTTGCAATTGCTTTATCTTC+AGG | + | chr4_3:27540737-27540756 | None:intergenic | 35.0% | |
| AAGCAGAAGGAGATCTATAA+AGG | - | chr4_3:27540800-27540819 | Msa0636660:CDS | 35.0% | |
| ! | ATGAACCAATTCCTTTTCTG+TGG | + | chr4_3:27540854-27540873 | None:intergenic | 35.0% |
| ! | TTTTTCACGGTTGAAAAGTG+TGG | + | chr4_3:27540918-27540937 | None:intergenic | 35.0% |
| AACAATAGTCGATGCAACAA+TGG | + | chr4_3:27540980-27540999 | None:intergenic | 35.0% | |
| ! | TACAACATTTTGAGCTACTG+AGG | - | chr4_3:27541024-27541043 | Msa0636660:intron | 35.0% |
| TGGTAGCAATTACAAGGTTA+GGG | + | chr4_3:27541232-27541251 | None:intergenic | 35.0% | |
| ! | TTGGTAGCAATTACAAGGTT+AGG | + | chr4_3:27541233-27541252 | None:intergenic | 35.0% |
| GAAACTTACGTTGACCAGAT+CGG | + | chr4_3:27536928-27536947 | None:intergenic | 40.0% | |
| TCTAAGGGAGAGAGAAATTG+AGG | + | chr4_3:27536961-27536980 | None:intergenic | 40.0% | |
| TCTCAACCACAATCAAAACC+AGG | - | chr4_3:27537072-27537091 | Msa0636660:three_prime_UTR | 40.0% | |
| ! | GCATCTTTGATCAGAAGTGT+TGG | - | chr4_3:27537229-27537248 | Msa0636660:three_prime_UTR | 40.0% |
| AGAGCTCATAAGAAGAGTAG+AGG | + | chr4_3:27537752-27537771 | None:intergenic | 40.0% | |
| ATGACCTGTATGGTTTATGG+TGG | - | chr4_3:27537820-27537839 | Msa0636660:intron | 40.0% | |
| ACTACCACCATAAACCATAC+AGG | + | chr4_3:27537827-27537846 | None:intergenic | 40.0% | |
| TTATGGTGGTAGTCCATTAC+AGG | - | chr4_3:27537834-27537853 | Msa0636660:intron | 40.0% | |
| TATGGTGGTAGTCCATTACA+GGG | - | chr4_3:27537835-27537854 | Msa0636660:intron | 40.0% | |
| CGACCAATTGAGATGGTAAT+AGG | - | chr4_3:27537908-27537927 | Msa0636660:intron | 40.0% | |
| ATTTGAGGACCAAACTCACT+AGG | - | chr4_3:27538204-27538223 | Msa0636660:intron | 40.0% | |
| TTTGTCCTTCAATGCGTCAA+GGG | + | chr4_3:27538417-27538436 | None:intergenic | 40.0% | |
| ! | TTTTGTCCTTCAATGCGTCA+AGG | + | chr4_3:27538418-27538437 | None:intergenic | 40.0% |
| GACGCATTGAAGGACAAAAA+TGG | - | chr4_3:27538419-27538438 | Msa0636660:intron | 40.0% | |
| ! | TGTCATTTGCCAGAACTCAA+TGG | + | chr4_3:27538501-27538520 | None:intergenic | 40.0% |
| ! | ATTGAGTTCTGGCAAATGAC+AGG | - | chr4_3:27538500-27538519 | Msa0636660:intron | 40.0% |
| ! | TTGAGTTCTGGCAAATGACA+GGG | - | chr4_3:27538501-27538520 | Msa0636660:intron | 40.0% |
| ! | TGTCATTTGCCAGAACTCAT+TGG | + | chr4_3:27538529-27538548 | None:intergenic | 40.0% |
| ! | AATGAGTTCTGGCAAATGAC+AGG | - | chr4_3:27538528-27538547 | Msa0636660:intron | 40.0% |
| ! | ATGAGTTCTGGCAAATGACA+GGG | - | chr4_3:27538529-27538548 | Msa0636660:intron | 40.0% |
| TTATGACATCTAGCGTAGTG+TGG | - | chr4_3:27538620-27538639 | Msa0636660:intron | 40.0% | |
| ! | GAAGAAAGAAATGACTGGCT+TGG | - | chr4_3:27538728-27538747 | Msa0636660:intron | 40.0% |
| CTGGGAATTAGGATATGGAA+AGG | - | chr4_3:27538803-27538822 | Msa0636660:intron | 40.0% | |
| GTGATATGACTGTAGAGGAA+CGG | - | chr4_3:27538994-27539013 | Msa0636660:intron | 40.0% | |
| GGATGGAAATGTTCTGTTTC+AGG | - | chr4_3:27539043-27539062 | Msa0636660:intron | 40.0% | |
| GACTTCATGTTCCAGTTGTT+TGG | - | chr4_3:27539246-27539265 | Msa0636660:intron | 40.0% | |
| ! | TCCAGTTGTTTGGGAAGTAT+AGG | - | chr4_3:27539256-27539275 | Msa0636660:intron | 40.0% |
| ! | CCAGTTGTTTGGGAAGTATA+GGG | - | chr4_3:27539257-27539276 | Msa0636660:intron | 40.0% |
| ! | GTTTGGGAAGTATAGGGATA+TGG | - | chr4_3:27539263-27539282 | Msa0636660:intron | 40.0% |
| GAATCCATGCCATCTTAACA+CGG | - | chr4_3:27539299-27539318 | Msa0636660:intron | 40.0% | |
| AACCGCTATGAAGAAGCTAT+AGG | - | chr4_3:27539342-27539361 | Msa0636660:CDS | 40.0% | |
| GTCCTATAGCTTCTTCATAG+CGG | + | chr4_3:27539347-27539366 | None:intergenic | 40.0% | |
| GATAGAGGGACGAAATTGAT+TGG | + | chr4_3:27539516-27539535 | None:intergenic | 40.0% | |
| !!! | AGGTCTTTCATCGGTTTTGA+TGG | + | chr4_3:27539561-27539580 | None:intergenic | 40.0% |
| TCACTCAGCATTTATGTCCT+TGG | + | chr4_3:27539722-27539741 | None:intergenic | 40.0% | |
| AGTAGACTCAACCCAAAACT+CGG | + | chr4_3:27539849-27539868 | None:intergenic | 40.0% | |
| CTGTCTAAGAATGCTTTCAC+TGG | + | chr4_3:27540047-27540066 | None:intergenic | 40.0% | |
| AAAGTTATAGTTGGCTGAGG+AGG | + | chr4_3:27540393-27540412 | None:intergenic | 40.0% | |
| TGAGGATGAGAGCAATTTGA+AGG | - | chr4_3:27540625-27540644 | Msa0636660:intron | 40.0% | |
| !! | GGCTTTATTTAGGAGAGGTA+AGG | - | chr4_3:27540646-27540665 | Msa0636660:intron | 40.0% |
| ! | CAATTCCTTTTCTGTGGTAC+TGG | + | chr4_3:27540848-27540867 | None:intergenic | 40.0% |
| CAGTACCACAGAAAAGGAAT+TGG | - | chr4_3:27540846-27540865 | Msa0636660:CDS | 40.0% | |
| GGTTCATATTTGTTTGGCAG+TGG | - | chr4_3:27540867-27540886 | Msa0636660:CDS | 40.0% | |
| CATATTTGTTTGGCAGTGGT+TGG | - | chr4_3:27540871-27540890 | Msa0636660:CDS | 40.0% | |
| TATGTGCATCCACCTATGAA+AGG | - | chr4_3:27541000-27541019 | Msa0636660:intron | 40.0% | |
| ATGTTGTAGCCTTTCATAGG+TGG | + | chr4_3:27541012-27541031 | None:intergenic | 40.0% | |
| TGTCAAACACGATTACTCTG+TGG | + | chr4_3:27541120-27541139 | None:intergenic | 40.0% | |
| ACCTTGTAATTGCTACCAAC+AGG | - | chr4_3:27541234-27541253 | Msa0636660:intron | 40.0% | |
| !! | GATCGGTTTTTGTTCGTGTG+TGG | + | chr4_3:27536911-27536930 | None:intergenic | 45.0% |
| CACACGAACAAAAACCGATC+TGG | - | chr4_3:27536911-27536930 | Msa0636660:three_prime_UTR | 45.0% | |
| TTGAACTTCCTCCATGTTGC+TGG | + | chr4_3:27537049-27537068 | None:intergenic | 45.0% | |
| TGTTGCGTCAGTGTTGTATC+TGG | + | chr4_3:27537136-27537155 | None:intergenic | 45.0% | |
| ATCAAAGATGCGTCTGGTGT+CGG | + | chr4_3:27537220-27537239 | None:intergenic | 45.0% | |
| CTTCTGATCAAAGATGCGTC+TGG | + | chr4_3:27537226-27537245 | None:intergenic | 45.0% | |
| !! | GAAGTGTTGGTGTTACAGAG+AGG | - | chr4_3:27537242-27537261 | Msa0636660:three_prime_UTR | 45.0% |
| GCATCTTGTCCTAGTGAGTT+TGG | + | chr4_3:27538216-27538235 | None:intergenic | 45.0% | |
| GAAAAACCCAAGTCCCACAT+CGG | - | chr4_3:27538288-27538307 | Msa0636660:intron | 45.0% | |
| ATCTATCCGATGTGGGACTT+GGG | + | chr4_3:27538297-27538316 | None:intergenic | 45.0% | |
| GAGTCTCATCTATCCGATGT+GGG | + | chr4_3:27538304-27538323 | None:intergenic | 45.0% | |
| AGAGTCTCATCTATCCGATG+TGG | + | chr4_3:27538305-27538324 | None:intergenic | 45.0% | |
| !! | CCTTACAAAACCGGCTTGTA+AGG | + | chr4_3:27538361-27538380 | None:intergenic | 45.0% |
| !! | CCTTACAAGCCGGTTTTGTA+AGG | - | chr4_3:27538358-27538377 | Msa0636660:intron | 45.0% |
| GTATCCATGCCATTGAGTTC+TGG | - | chr4_3:27538489-27538508 | Msa0636660:intron | 45.0% | |
| TTTGCCAGAACTCAATGGCA+TGG | + | chr4_3:27538496-27538515 | None:intergenic | 45.0% | |
| !! | AAATGACTGGCTTGGGCATT+GGG | - | chr4_3:27538736-27538755 | Msa0636660:intron | 45.0% |
| GTGAGCTGGGAATTAGGATA+TGG | - | chr4_3:27538798-27538817 | Msa0636660:intron | 45.0% | |
| TCTGCCATTGGTGGAACATT+TGG | + | chr4_3:27538846-27538865 | None:intergenic | 45.0% | |
| TCGCAGTGATATGACTGTAG+AGG | - | chr4_3:27538989-27539008 | Msa0636660:intron | 45.0% | |
| ATGACTGTAGAGGAACGGAT+TGG | - | chr4_3:27538999-27539018 | Msa0636660:intron | 45.0% | |
| ! | TGACTGTAGAGGAACGGATT+GGG | - | chr4_3:27539000-27539019 | Msa0636660:intron | 45.0% |
| GGCCATGCAACAGTATGAAA+TGG | - | chr4_3:27539082-27539101 | Msa0636660:intron | 45.0% | |
| ATGTCAGGCCATAGCTTACA+TGG | - | chr4_3:27539218-27539237 | Msa0636660:CDS | 45.0% | |
| TGTCAGGCCATAGCTTACAT+GGG | - | chr4_3:27539219-27539238 | Msa0636660:intron | 45.0% | |
| GTCATCTCCCATGTAAGCTA+TGG | + | chr4_3:27539229-27539248 | None:intergenic | 45.0% | |
| CCCTATACTTCCCAAACAAC+TGG | + | chr4_3:27539260-27539279 | None:intergenic | 45.0% | |
| GAAGTATAGGGATATGGCTC+TGG | - | chr4_3:27539269-27539288 | Msa0636660:intron | 45.0% | |
| AGCATGAGCGCACAATATTG+AGG | - | chr4_3:27539897-27539916 | Msa0636660:intron | 45.0% | |
| ! | TGCTCACACGTTTTGTCGTA+AGG | - | chr4_3:27539952-27539971 | Msa0636660:intron | 45.0% |
| GCATTCTTAGACAGAAGCTG+TGG | - | chr4_3:27540053-27540072 | Msa0636660:intron | 45.0% | |
| GGAGGTAATTTCTACTCCCA+TGG | + | chr4_3:27540375-27540394 | None:intergenic | 45.0% | |
| !!! | CTTTTCTGTGGTACTGGTTC+AGG | + | chr4_3:27540842-27540861 | None:intergenic | 45.0% |
| CTGAACCAGTACCACAGAAA+AGG | - | chr4_3:27540840-27540859 | Msa0636660:CDS | 45.0% | |
| !! | GCCTGTTGGTAGCAATTACA+AGG | + | chr4_3:27541238-27541257 | None:intergenic | 45.0% |
| CATGTCAGTTACATGCCTGT+TGG | + | chr4_3:27541252-27541271 | None:intergenic | 45.0% | |
| GGAGCAACGACCAATTGAGA+TGG | - | chr4_3:27537901-27537920 | Msa0636660:intron | 50.0% | |
| CATCTATCCGATGTGGGACT+TGG | + | chr4_3:27538298-27538317 | None:intergenic | 50.0% | |
| !! | CAAAACCGGCTTGTAAGGTG+AGG | + | chr4_3:27538356-27538375 | None:intergenic | 50.0% |
| !! | GAAATGACTGGCTTGGGCAT+TGG | - | chr4_3:27538735-27538754 | Msa0636660:intron | 50.0% |
| !! | AATGACTGGCTTGGGCATTG+GGG | - | chr4_3:27538737-27538756 | Msa0636660:intron | 50.0% |
| !! | GACTGTAGAGGAACGGATTG+GGG | - | chr4_3:27539001-27539020 | Msa0636660:intron | 50.0% |
| GCAGATCGGAGAAAGATGGA+TGG | - | chr4_3:27539026-27539045 | Msa0636660:intron | 50.0% | |
| TCCATGCCATCTTAACACGG+CGG | - | chr4_3:27539302-27539321 | Msa0636660:intron | 50.0% | |
| GCGGTTCAGCTTAATCAGAC+AGG | + | chr4_3:27539328-27539347 | None:intergenic | 50.0% | |
| TACCGACCCTTAGAACTCCA+AGG | - | chr4_3:27539702-27539721 | Msa0636660:intron | 50.0% | |
| !! | GTCCTTGGAGTTCTAAGGGT+CGG | + | chr4_3:27539707-27539726 | None:intergenic | 50.0% |
| GAATTATATCCCTGGGACCC+AGG | + | chr4_3:27540304-27540323 | None:intergenic | 50.0% | |
| GTAAGGCTAGAGCAGCACTT+GGG | - | chr4_3:27540663-27540682 | Msa0636660:intron | 50.0% | |
| !! | TGTGGTACTGGTTCAGGTCT+TGG | + | chr4_3:27540836-27540855 | None:intergenic | 50.0% |
| TGGTAGTCCATTACAGGGCG+TGG | - | chr4_3:27537840-27537859 | Msa0636660:intron | 55.0% | |
| TCTCAGACCACGCCCTGTAA+TGG | + | chr4_3:27537850-27537869 | None:intergenic | 55.0% | |
| GCACTCCTCACCTTACAAGC+CGG | - | chr4_3:27538348-27538367 | Msa0636660:intron | 55.0% | |
| GACAGCCCTTGACGCATTGA+AGG | - | chr4_3:27538409-27538428 | Msa0636660:intron | 55.0% | |
| ! | GACAGGGTGCCAATGAGTTC+TGG | - | chr4_3:27538517-27538536 | Msa0636660:intron | 55.0% |
| GGGTGGCAAGCATGAAAGCT+GGG | - | chr4_3:27538757-27538776 | Msa0636660:intron | 55.0% | |
| GGTGGCAAGCATGAAAGCTG+GGG | - | chr4_3:27538758-27538777 | Msa0636660:intron | 55.0% | |
| CTGCGTGTGAGCTGGGAATT+AGG | - | chr4_3:27538792-27538811 | Msa0636660:intron | 55.0% | |
| !! | AACGGATTGGGGCAGCAGAT+CGG | - | chr4_3:27539012-27539031 | Msa0636660:intron | 55.0% |
| GGCAGCAGATCGGAGAAAGA+TGG | - | chr4_3:27539022-27539041 | Msa0636660:intron | 55.0% | |
| GGTAAGGCTAGAGCAGCACT+TGG | - | chr4_3:27540662-27540681 | Msa0636660:intron | 55.0% | |
| TTGGGCAGACAGATGTTGCC+AGG | - | chr4_3:27540681-27540700 | Msa0636660:intron | 55.0% | |
| TGGGCAGACAGATGTTGCCA+GGG | - | chr4_3:27540682-27540701 | Msa0636660:intron | 55.0% | |
| CAGGGCGTGGTCTGAGAACA+CGG | - | chr4_3:27537853-27537872 | Msa0636660:intron | 60.0% | |
| GGGGTGGCAAGCATGAAAGC+TGG | - | chr4_3:27538756-27538775 | Msa0636660:intron | 60.0% | |
| AGCGTTGCTGCGTGTGAGCT+GGG | - | chr4_3:27538785-27538804 | Msa0636660:intron | 60.0% | |
| GCCGCCGTGTTAAGATGGCA+TGG | + | chr4_3:27539306-27539325 | None:intergenic | 60.0% | |
| GACAGGCCGCCGTGTTAAGA+TGG | + | chr4_3:27539311-27539330 | None:intergenic | 60.0% | |
| TCTGCGATTTCCTGGGTCCC+AGG | - | chr4_3:27540291-27540310 | Msa0636660:intron | 60.0% | |
| CTGCGATTTCCTGGGTCCCA+GGG | - | chr4_3:27540292-27540311 | Msa0636660:intron | 60.0% | |
| !! | GACTGGCTTGGGCATTGGGG+TGG | - | chr4_3:27538740-27538759 | Msa0636660:intron | 65.0% |
| ! | GAGCGTTGCTGCGTGTGAGC+TGG | - | chr4_3:27538784-27538803 | Msa0636660:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 27536905 | 27541313 | 27536905 | ID=Msa0636660;Name=Msa0636660 |
| chr4_3 | mRNA | 27536905 | 27541313 | 27536905 | ID=Msa0636660-mRNA-1;Parent=Msa0636660;Name=Msa0636660-mRNA-1;_AED=0.08;_eAED=0.08;_QI=38|0.71|0.62|1|0.85|0.75|8|358|371 |
| chr4_3 | exon | 27536905 | 27537601 | 27536905 | ID=Msa0636660-mRNA-1:exon:6808;Parent=Msa0636660-mRNA-1 |
| chr4_3 | exon | 27538841 | 27538993 | 27538841 | ID=Msa0636660-mRNA-1:exon:6807;Parent=Msa0636660-mRNA-1 |
| chr4_3 | exon | 27539115 | 27539237 | 27539115 | ID=Msa0636660-mRNA-1:exon:6806;Parent=Msa0636660-mRNA-1 |
| chr4_3 | exon | 27539307 | 27539528 | 27539307 | ID=Msa0636660-mRNA-1:exon:6805;Parent=Msa0636660-mRNA-1 |
| chr4_3 | exon | 27540296 | 27540362 | 27540296 | ID=Msa0636660-mRNA-1:exon:6804;Parent=Msa0636660-mRNA-1 |
| chr4_3 | exon | 27540735 | 27540906 | 27540735 | ID=Msa0636660-mRNA-1:exon:6803;Parent=Msa0636660-mRNA-1 |
| chr4_3 | exon | 27541125 | 27541168 | 27541125 | ID=Msa0636660-mRNA-1:exon:6802;Parent=Msa0636660-mRNA-1 |
| chr4_3 | exon | 27541280 | 27541313 | 27541280 | ID=Msa0636660-mRNA-1:exon:6801;Parent=Msa0636660-mRNA-1 |
| chr4_3 | five_prime_UTR | 27541280 | 27541313 | 27541280 | ID=Msa0636660-mRNA-1:five_prime_utr;Parent=Msa0636660-mRNA-1 |
| chr4_3 | five_prime_UTR | 27541165 | 27541168 | 27541165 | ID=Msa0636660-mRNA-1:five_prime_utr;Parent=Msa0636660-mRNA-1 |
| chr4_3 | CDS | 27541125 | 27541164 | 27541125 | ID=Msa0636660-mRNA-1:cds;Parent=Msa0636660-mRNA-1 |
| chr4_3 | CDS | 27540735 | 27540906 | 27540735 | ID=Msa0636660-mRNA-1:cds;Parent=Msa0636660-mRNA-1 |
| chr4_3 | CDS | 27540296 | 27540362 | 27540296 | ID=Msa0636660-mRNA-1:cds;Parent=Msa0636660-mRNA-1 |
| chr4_3 | CDS | 27539307 | 27539528 | 27539307 | ID=Msa0636660-mRNA-1:cds;Parent=Msa0636660-mRNA-1 |
| chr4_3 | CDS | 27539115 | 27539237 | 27539115 | ID=Msa0636660-mRNA-1:cds;Parent=Msa0636660-mRNA-1 |
| chr4_3 | CDS | 27538841 | 27538993 | 27538841 | ID=Msa0636660-mRNA-1:cds;Parent=Msa0636660-mRNA-1 |
| chr4_3 | CDS | 27537263 | 27537601 | 27537263 | ID=Msa0636660-mRNA-1:cds;Parent=Msa0636660-mRNA-1 |
| chr4_3 | three_prime_UTR | 27536905 | 27537262 | 27536905 | ID=Msa0636660-mRNA-1:three_prime_utr;Parent=Msa0636660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
