AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0596800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0596800 MtrunA17_Chr4g0019501 89.785 372 10 1 1 344 1 372 0.0 681
Msa0596800 MtrunA17_Chr7g0234801 29.391 279 167 4 55 306 267 542 1.80e-23 101
Msa0596800 MtrunA17_Chr8g0377771 28.777 278 166 5 55 304 271 544 1.71e-21 95.5
Msa0596800 MtrunA17_Chr8g0339141 30.804 224 125 4 107 303 327 547 2.16e-19 89.4
Msa0596800 MtrunA17_Chr1g0152361 26.797 306 181 10 37 310 85 379 1.18e-16 80.1
Msa0596800 MtrunA17_Chr4g0027201 26.727 333 187 14 22 307 230 552 7.63e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0596800 AT3G21640.1 62.466 373 102 5 1 343 1 365 1.82e-162 458
Msa0596800 AT5G48570.1 30.137 292 169 8 49 309 274 561 2.06e-21 95.5
Msa0596800 AT3G25230.1 26.897 290 157 7 55 304 272 546 8.47e-18 84.7
Msa0596800 AT3G25230.2 26.897 290 157 7 55 304 272 546 1.18e-17 84.3
Msa0596800 AT3G54010.2 27.564 312 166 13 45 307 160 460 2.00e-11 65.5
Msa0596800 AT3G54010.1 27.564 312 166 13 45 307 250 550 2.28e-11 65.5

Find 103 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATGGAAATGTTCTGTTTC+AGG 0.222182 4_2:-28288553 Msa0596800:CDS
GAGATCTATAAAGGAATATT+TGG 0.225703 4_2:-28286789 Msa0596800:CDS
GCAATTTGAAGGCTTTATTT+AGG 0.233759 4_2:-28286962 Msa0596800:CDS
TCAACTTCAGAATCAACTTT+TGG 0.240967 4_2:+28290996 None:intergenic
TGTGGTACTGGTTCAGGTCT+TGG 0.262790 4_2:+28286765 None:intergenic
CTTGCAATTGCTTTATCTTC+AGG 0.277406 4_2:+28286864 None:intergenic
GACTTCATGTTCCAGTTGTT+TGG 0.278250 4_2:-28288350 Msa0596800:CDS
AGGTTCAAGGCTAATTTATT+TGG 0.283449 4_2:+28286326 None:intergenic
TCTGCCATTGGTGGAACATT+TGG 0.294220 4_2:+28288753 None:intergenic
GGTTACAAAACAAATTATTA+AGG 0.302747 4_2:-28290958 Msa0596800:CDS
TTGGTAGCAATTACAAGGTT+AGG 0.305350 4_2:+28286368 None:intergenic
TTATGGTGGTAGTCCATTAC+AGG 0.321001 4_2:-28290251 Msa0596800:intron
CCAGTTGTTTGGGAAGTATA+GGG 0.330723 4_2:-28288339 Msa0596800:CDS
TTGAACTTCCTCCATGTTGC+TGG 0.331084 4_2:+28291336 None:intergenic
AAATGACTGGCTTGGGCATT+GGG 0.332295 4_2:-28288860 Msa0596800:CDS
CTGCGTGTGAGCTGGGAATT+AGG 0.336747 4_2:-28288804 Msa0596800:CDS
CGACCAATTGAGATGGTAAT+AGG 0.338090 4_2:-28290177 Msa0596800:CDS
GTTTGGGAAGTATAGGGATA+TGG 0.339954 4_2:-28288333 Msa0596800:CDS
ACTTCATGTTCCAGTTGTTT+GGG 0.360386 4_2:-28288349 Msa0596800:CDS
AAAATGTTGTACCCTTTCAT+AGG 0.375824 4_2:+28286586 None:intergenic
CCCTATACTTCCCAAACAAC+TGG 0.377001 4_2:+28288339 None:intergenic
GGAATTGGTTCATATTTGTT+TGG 0.380589 4_2:-28286737 Msa0596800:CDS
GTTTATGAAGTTGAGCTCAT+TGG 0.387560 4_2:-28288726 Msa0596800:CDS
GGACTACTCAATAATTCTTC+AGG 0.387637 4_2:+28291020 None:intergenic
AAGCAGAAGGAGATCTATAA+AGG 0.387775 4_2:-28286798 Msa0596800:CDS
TCCAGTTGTTTGGGAAGTAT+AGG 0.389067 4_2:-28288340 Msa0596800:CDS
GAGCGTTGCTGCGTGTGAGC+TGG 0.407608 4_2:-28288812 Msa0596800:CDS
GTGAGCTGGGAATTAGGATA+TGG 0.419661 4_2:-28288798 Msa0596800:CDS
TTTCCTATTACCATCTCAAT+TGG 0.421411 4_2:+28290174 None:intergenic
TGTCAAACACGATTACTCTA+TGG 0.424232 4_2:+28286481 None:intergenic
CATATTTGTTTGGCAGTGGT+TGG 0.426113 4_2:-28286727 Msa0596800:CDS
GAAATGACTGGCTTGGGCAT+TGG 0.428307 4_2:-28288861 Msa0596800:CDS
TGACTGTAGAGGAACGGATT+GGG 0.429854 4_2:-28288596 Msa0596800:CDS
ACAGAAGCATGTTGAATACT+TGG 0.438922 4_2:+28290914 None:intergenic
AAGAAAGAAATGACTGGCTT+GGG 0.441743 4_2:-28288867 Msa0596800:CDS
GAAAGTACTGAATATGCAAA+AGG 0.441865 4_2:-28291050 Msa0596800:CDS
TCTAAGGGAGAGAGAAATTG+AGG 0.447949 4_2:+28291423 None:intergenic
TAAACTTTAGAGAAGGTTCA+AGG 0.455714 4_2:+28286313 None:intergenic
ATGTCAGGCCATAGCTTACA+TGG 0.460197 4_2:-28288378 Msa0596800:intron
TGGTAGCAATTACAAGGTTA+GGG 0.460657 4_2:+28286369 None:intergenic
GAAGAAAGAAATGACTGGCT+TGG 0.461382 4_2:-28288868 Msa0596800:CDS
TCTCAGACCACGCCCTGTAA+TGG 0.475502 4_2:+28290238 None:intergenic
GGCCATGCAACAGTATGAAA+TGG 0.476558 4_2:-28288514 Msa0596800:intron
AAAGTACTGAATATGCAAAA+GGG 0.478686 4_2:-28291049 Msa0596800:CDS
CAGTACCACAGAAAAGGAAT+TGG 0.480228 4_2:-28286752 Msa0596800:CDS
TTGGGCAGACAGATGTTGCC+AGG 0.480432 4_2:-28286917 Msa0596800:CDS
GGGGTGGCAAGCATGAAAGC+TGG 0.481889 4_2:-28288840 Msa0596800:CDS
GAAGTATAGGGATATGGCTC+TGG 0.484336 4_2:-28288327 Msa0596800:CDS
ATTGAGATGGTAATAGGAAA+AGG 0.485564 4_2:-28290171 Msa0596800:intron
GGCTTTATTTAGGAGAGGTA+AGG 0.490198 4_2:-28286952 Msa0596800:CDS
CTGAACCAGTACCACAGAAA+AGG 0.492954 4_2:-28286758 Msa0596800:CDS
GGGTGGCAAGCATGAAAGCT+GGG 0.494339 4_2:-28288839 Msa0596800:CDS
GGTTCATATTTGTTTGGCAG+TGG 0.498991 4_2:-28286731 Msa0596800:CDS
CAAATTATTAAGGAAGGTCA+TGG 0.504301 4_2:-28290948 Msa0596800:CDS
TCATAAACTAAATCTGCCAT+TGG 0.508037 4_2:+28288741 None:intergenic
TGAGGATGAGAGCAATTTGA+AGG 0.509951 4_2:-28286973 Msa0596800:CDS
GTCTGTTGGTAGCAATTACA+AGG 0.520857 4_2:+28286363 None:intergenic
ATGACTGTAGAGGAACGGAT+TGG 0.522055 4_2:-28288597 Msa0596800:CDS
AACGGATTGGGGCAGCAGAT+CGG 0.529421 4_2:-28288584 Msa0596800:CDS
TAAACTAAATCTGCCATTGG+TGG 0.530780 4_2:+28288744 None:intergenic
AGCGTTGCTGCGTGTGAGCT+GGG 0.534499 4_2:-28288811 Msa0596800:CDS
GGTAAGGCTAGAGCAGCACT+TGG 0.543948 4_2:-28286936 Msa0596800:CDS
GTCATCTCCCATGTAAGCTA+TGG 0.545323 4_2:+28288370 None:intergenic
GGCAGCAGATCGGAGAAAGA+TGG 0.546425 4_2:-28288574 Msa0596800:CDS
AGTTGAAGTTCTTCATGAGA+AGG 0.548105 4_2:-28290979 Msa0596800:CDS
TGGTAGTCCATTACAGGGCG+TGG 0.549466 4_2:-28290245 Msa0596800:intron
ACAAAACAAATTATTAAGGA+AGG 0.552128 4_2:-28290954 Msa0596800:CDS
TAAATTTGAAGATACATGGC+AGG 0.555459 4_2:-28290205 Msa0596800:CDS
ATGTTGTACCCTTTCATAGG+TGG 0.559299 4_2:+28286589 None:intergenic
AAGCATGTTGAATACTTGGA+AGG 0.559903 4_2:+28290918 None:intergenic
GAATTAGGATATGGAAAGGA+AGG 0.562161 4_2:-28288789 Msa0596800:CDS
CAGGGCGTGGTCTGAGAACA+CGG 0.563793 4_2:-28290232 Msa0596800:CDS
TATGTGCATCCACCTATGAA+AGG 0.567332 4_2:-28286598 Msa0596800:three_prime_UTR
ATGTGCATCCACCTATGAAA+GGG 0.568546 4_2:-28286597 Msa0596800:three_prime_UTR
GCTAATTTATTTGGTAAACA+AGG 0.569623 4_2:+28286335 None:intergenic
GACTGGCTTGGGCATTGGGG+TGG 0.573654 4_2:-28288856 Msa0596800:CDS
AACCATTTCATACTGTTGCA+TGG 0.576813 4_2:+28288512 None:intergenic
ACAGAGAAGAAAGAAATGAC+TGG 0.578132 4_2:-28288873 Msa0596800:intron
GACTGTAGAGGAACGGATTG+GGG 0.579307 4_2:-28288595 Msa0596800:CDS
AACAATAGTTGATGCAACAA+TGG 0.579790 4_2:+28286621 None:intergenic
TTGAAGGCTTTATTTAGGAG+AGG 0.585733 4_2:-28286957 Msa0596800:CDS
AGCATAAATTTGAAGATACA+TGG 0.586003 4_2:-28290209 Msa0596800:CDS
CTGGGAATTAGGATATGGAA+AGG 0.597900 4_2:-28288793 Msa0596800:CDS
GCAGATCGGAGAAAGATGGA+TGG 0.599142 4_2:-28288570 Msa0596800:CDS
ATTAATGGGAAAATGAAATG+TGG 0.605053 4_2:+28291374 None:intergenic
AAATAAATAAACTTTAGAGA+AGG 0.606685 4_2:+28286306 None:intergenic
GTTTCAGGAAAATAAACTAG+AGG 0.610535 4_2:-28288538 Msa0596800:CDS
TCAGGAAAATAAACTAGAGG+AGG 0.614029 4_2:-28288535 Msa0596800:CDS
AAGTACTGAATATGCAAAAG+GGG 0.616531 4_2:-28291048 Msa0596800:CDS
TAAACAAGGTACATGTCTGT+TGG 0.617558 4_2:+28286349 None:intergenic
AGCTATTTATCAAAAGCAGA+AGG 0.618624 4_2:-28286811 Msa0596800:CDS
GTAAGGCTAGAGCAGCACTT+GGG 0.626696 4_2:-28286935 Msa0596800:CDS
AAACTTGCAGGTATTAAGTG+AGG 0.627657 4_2:-28286991 Msa0596800:intron
AATGACTGGCTTGGGCATTG+GGG 0.631535 4_2:-28288859 Msa0596800:CDS
GTGATATGACTGTAGAGGAA+CGG 0.631871 4_2:-28288602 Msa0596800:CDS
AAATTATTAAGGAAGGTCAT+GGG 0.635327 4_2:-28290947 Msa0596800:CDS
TATGGTGGTAGTCCATTACA+GGG 0.637407 4_2:-28290250 Msa0596800:intron
TCGCAGTGATATGACTGTAG+AGG 0.641089 4_2:-28288607 Msa0596800:CDS
TGGGCAGACAGATGTTGCCA+GGG 0.643676 4_2:-28286916 Msa0596800:CDS
GGAGCAACGACCAATTGAGA+TGG 0.655756 4_2:-28290184 Msa0596800:CDS
GGTGGCAAGCATGAAAGCTG+GGG 0.672895 4_2:-28288838 Msa0596800:CDS
TGTCAGGCCATAGCTTACAT+GGG 0.675965 4_2:-28288377 Msa0596800:intron
TCTCAACCACAATCAAAACC+AGG 0.685386 4_2:-28291310 Msa0596800:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATATAAAATTAAT+GGG + chr4_2:28286410-28286429 None:intergenic 0.0%
!! AAAAAAAAATATAAAATTAA+TGG + chr4_2:28286411-28286430 None:intergenic 0.0%
!!! TATTTATTTTAGTAATTTCA+TGG - chr4_2:28287843-28287862 Msa0596800:intron 10.0%
!! CTATAATAAAATTATAATCA+TGG - chr4_2:28290038-28290057 Msa0596800:intron 10.0%
!!! AATTTAGTTTTTAAAACTGT+CGG - chr4_2:28287160-28287179 Msa0596800:intron 15.0%
!!! TTTACATAGTATTTTATGTT+GGG + chr4_2:28289577-28289596 None:intergenic 15.0%
!!! ATTTACATAGTATTTTATGT+TGG + chr4_2:28289578-28289597 None:intergenic 15.0%
!!! TAAAGAAATATTTTGATAGA+GGG + chr4_2:28289701-28289720 None:intergenic 15.0%
!!! TAAATTGTTATAGTATTTTC+TGG - chr4_2:28290687-28290706 Msa0596800:intron 15.0%
!! ATAAATGGAAATTAATTACC+TGG + chr4_2:28286478-28286497 None:intergenic 20.0%
!! GGTTACAAAACAAATTATTA+AGG - chr4_2:28286809-28286828 Msa0596800:CDS 20.0%
!! ACAAAACAAATTATTAAGGA+AGG - chr4_2:28286813-28286832 Msa0596800:CDS 20.0%
!!! AAATAATTTGAACTTGTTTG+TGG - chr4_2:28287026-28287045 Msa0596800:intron 20.0%
!!! AATAATTTGAACTTGTTTGT+GGG - chr4_2:28287027-28287046 Msa0596800:intron 20.0%
!!! TGTTGTTGCTTATTAAATTT+TGG - chr4_2:28287083-28287102 Msa0596800:intron 20.0%
!!! TTGCTTATTAAATTTTGGAA+CGG - chr4_2:28287088-28287107 Msa0596800:intron 20.0%
!!! GACAGTTTTAAAAACTAAAT+TGG + chr4_2:28287161-28287180 None:intergenic 20.0%
!! TTATAAACTGGTAATAGAAA+TGG - chr4_2:28287722-28287741 Msa0596800:intron 20.0%
!!! AGTAGAGTAAATTTTCATTT+TGG - chr4_2:28287757-28287776 Msa0596800:intron 20.0%
!! TAAAATAAATATACACTCAG+GGG + chr4_2:28287834-28287853 None:intergenic 20.0%
!! CTAAAATAAATATACACTCA+GGG + chr4_2:28287835-28287854 None:intergenic 20.0%
!! ACTAAAATAAATATACACTC+AGG + chr4_2:28287836-28287855 None:intergenic 20.0%
!! ACTATCAAAAGAGATATTTA+AGG - chr4_2:28287875-28287894 Msa0596800:intron 20.0%
!!! CAGAGATTTTTATGTAATTT+TGG - chr4_2:28287925-28287944 Msa0596800:intron 20.0%
!! CTTGATAAAAGTTTATAAAG+AGG - chr4_2:28288009-28288028 Msa0596800:intron 20.0%
!!! GTTGATAAAAGTTTATAAAG+AGG - chr4_2:28288213-28288232 Msa0596800:intron 20.0%
!!! GTTGATAAAAGTTTATAAAG+AGG - chr4_2:28288213-28288232 Msa0596800:intron 20.0%
!! TACTATGTAAATAAGCATTT+CGG - chr4_2:28289586-28289605 Msa0596800:intron 20.0%
!!! ATTGGTCTTTATTAATGTAA+GGG + chr4_2:28289669-28289688 None:intergenic 20.0%
!!! CTAAAGAAATATTTTGATAG+AGG + chr4_2:28289702-28289721 None:intergenic 20.0%
!!! ATTCCTTTTTATCTTATTGA+AGG - chr4_2:28290146-28290165 Msa0596800:intron 20.0%
!!! TTCCTTTTTATCTTATTGAA+GGG - chr4_2:28290147-28290166 Msa0596800:intron 20.0%
!! TAACAATTTACAAGTATGTT+AGG + chr4_2:28290677-28290696 None:intergenic 20.0%
!! AAATGTGGTTATGAATTTTC+CGG + chr4_2:28286381-28286400 None:intergenic 25.0%
! ATTAATGGGAAAATGAAATG+TGG + chr4_2:28286396-28286415 None:intergenic 25.0%
!!! TATTTTTTTTTCCAGCAACA+TGG - chr4_2:28286420-28286439 Msa0596800:three_prime_UTR 25.0%
!! TTTTCTTGACCTACAAAATA+AGG + chr4_2:28286675-28286694 None:intergenic 25.0%
!!! AAAGTACTGAATATGCAAAA+GGG - chr4_2:28286718-28286737 Msa0596800:CDS 25.0%
! AAATTATTAAGGAAGGTCAT+GGG - chr4_2:28286820-28286839 Msa0596800:CDS 25.0%
! ATTGAACGGATATATGTTTA+AGG - chr4_2:28287051-28287070 Msa0596800:intron 25.0%
! AGTTTCTGATATTCTCTTAT+AGG - chr4_2:28287230-28287249 Msa0596800:intron 25.0%
! AACAAAAGAAAATTTCCTCA+CGG + chr4_2:28287337-28287356 None:intergenic 25.0%
! AGCATAAATTTGAAGATACA+TGG - chr4_2:28287558-28287577 Msa0596800:intron 25.0%
!!! ATGCTTGAAGTTTAAAGTTT+TGG - chr4_2:28287620-28287639 Msa0596800:intron 25.0%
! AAAGAAATCCAATTGATCAA+TGG + chr4_2:28287657-28287676 None:intergenic 25.0%
!! TGATTTTCGTGTTTATAAAC+TGG - chr4_2:28287710-28287729 Msa0596800:intron 25.0%
!! AGAGTAAATTTTCATTTTGG+TGG - chr4_2:28287760-28287779 Msa0596800:intron 25.0%
!!! ATGTAATTTTGGTACATTCA+AGG - chr4_2:28287936-28287955 Msa0596800:intron 25.0%
! GATAAAAGTTTATAAAGAGG+AGG - chr4_2:28288012-28288031 Msa0596800:intron 25.0%
! GATAAAAGTTTATAAAGAGG+AGG - chr4_2:28288012-28288031 Msa0596800:intron 25.0%
! GATACAAGACTAATATTTAC+GGG + chr4_2:28288350-28288369 None:intergenic 25.0%
! GGATACAAGACTAATATTTA+CGG + chr4_2:28288351-28288370 None:intergenic 25.0%
! GATAAAAGTTTATAAAGAGG+AGG - chr4_2:28288012-28288031 Msa0596800:intron 25.0%
! GATACAAGACTAATATTTAC+GGG + chr4_2:28288350-28288369 None:intergenic 25.0%
! GGATACAAGACTAATATTTA+CGG + chr4_2:28288351-28288370 None:intergenic 25.0%
! GATACAAGACTAATATTTAC+AGG + chr4_2:28288350-28288369 None:intergenic 25.0%
!!! TCTTTAACAGACTTGTTATT+TGG - chr4_2:28288851-28288870 Msa0596800:CDS 25.0%
!! GTTTTCATTAAATTGTTGCA+TGG - chr4_2:28289087-28289106 Msa0596800:intron 25.0%
! TTATAGTGAGTAAAATTCAC+AGG - chr4_2:28289130-28289149 Msa0596800:intron 25.0%
! TATAGTGAGTAAAATTCACA+GGG - chr4_2:28289131-28289150 Msa0596800:intron 25.0%
!! AATTGCTGAAGAAAATTTTG+AGG + chr4_2:28289613-28289632 None:intergenic 25.0%
!!! TTGCTATTTCACAAATTTGA+GGG + chr4_2:28289640-28289659 None:intergenic 25.0%
!!! TTTGCTATTTCACAAATTTG+AGG + chr4_2:28289641-28289660 None:intergenic 25.0%
!!! GATTGGTCTTTATTAATGTA+AGG + chr4_2:28289670-28289689 None:intergenic 25.0%
! TGGTAGATAATCAAATTTGA+AGG + chr4_2:28289802-28289821 None:intergenic 25.0%
! CAAATTTGATTATCTACCAT+TGG - chr4_2:28289803-28289822 Msa0596800:intron 25.0%
!!! TAAATTGTTTTACCGAGTTT+TGG - chr4_2:28290005-28290024 Msa0596800:intron 25.0%
!!! AAATTGTTTTACCGAGTTTT+GGG - chr4_2:28290006-28290025 Msa0596800:intron 25.0%
! TTCCCTTCAATAAGATAAAA+AGG + chr4_2:28290152-28290171 None:intergenic 25.0%
! ATTTCCCTTGACTAAAAATA+TGG + chr4_2:28290275-28290294 None:intergenic 25.0%
! GAAAAACTTGAATCAAACAT+GGG + chr4_2:28290431-28290450 None:intergenic 25.0%
! AGAAAAACTTGAATCAAACA+TGG + chr4_2:28290432-28290451 None:intergenic 25.0%
! ACTAAATAAAAGTGAGAATG+AGG + chr4_2:28290592-28290611 None:intergenic 25.0%
! AGATATAGAATCATGTTACA+AGG + chr4_2:28290722-28290741 None:intergenic 25.0%
! GAGATCTATAAAGGAATATT+TGG - chr4_2:28290978-28290997 Msa0596800:CDS 25.0%
!! ATTTTATCTATGCTTGATGT+TGG - chr4_2:28291235-28291254 Msa0596800:intron 25.0%
!! TTTGTTCATAAGCATTTTGT+GGG - chr4_2:28291340-28291359 Msa0596800:exon 25.0%
! GCTAATTTATTTGGTAAACA+AGG + chr4_2:28291435-28291454 None:intergenic 25.0%
!!! TAATTACCTGGTTTTGATTG+TGG + chr4_2:28286466-28286485 None:intergenic 30.0%
GTATCACATGAGTGAATAAA+TGG + chr4_2:28286493-28286512 None:intergenic 30.0%
TCGAATTTCATGTATGATTG+AGG - chr4_2:28286646-28286665 Msa0596800:exon 30.0%
!!! TTGAGGAAACCTTATTTTGT+AGG - chr4_2:28286663-28286682 Msa0596800:exon 30.0%
!! GAAAGTACTGAATATGCAAA+AGG - chr4_2:28286717-28286736 Msa0596800:CDS 30.0%
!! AAGTACTGAATATGCAAAAG+GGG - chr4_2:28286719-28286738 Msa0596800:CDS 30.0%
! TCAACTTCAGAATCAACTTT+TGG + chr4_2:28286774-28286793 None:intergenic 30.0%
CAAATTATTAAGGAAGGTCA+TGG - chr4_2:28286819-28286838 Msa0596800:CDS 30.0%
GTTTCATGCTAGTAGAAAAA+AGG - chr4_2:28286962-28286981 Msa0596800:CDS 30.0%
ACTAAATTGAACTACCAAAC+AGG + chr4_2:28287213-28287232 None:intergenic 30.0%
TATAGGAACTAATGTGTTCA+AGG - chr4_2:28287247-28287266 Msa0596800:intron 30.0%
! TTTCAATGACCCAAATGTTT+TGG - chr4_2:28287307-28287326 Msa0596800:intron 30.0%
!! TCTTTTGTTTAGACTGAATG+TGG - chr4_2:28287348-28287367 Msa0596800:intron 30.0%
!! CTTTTGTTTAGACTGAATGT+GGG - chr4_2:28287349-28287368 Msa0596800:intron 30.0%
AGGTGAAGCAAAAATGTATT+AGG - chr4_2:28287380-28287399 Msa0596800:intron 30.0%
GTAGAGGAGTAGATATTAAT+AGG + chr4_2:28287418-28287437 None:intergenic 30.0%
TCTAATTCATAACTATGACC+TGG - chr4_2:28287488-28287507 Msa0596800:intron 30.0%
TAAATTTGAAGATACATGGC+AGG - chr4_2:28287562-28287581 Msa0596800:intron 30.0%
TTTCCTATTACCATCTCAAT+TGG + chr4_2:28287596-28287615 None:intergenic 30.0%
ATTGAGATGGTAATAGGAAA+AGG - chr4_2:28287596-28287615 Msa0596800:intron 30.0%
ACGATTTAGAGAATAGATGT+AGG + chr4_2:28287690-28287709 None:intergenic 30.0%
TGATACCATGTTGAAATTTG+GGG + chr4_2:28288080-28288099 None:intergenic 30.0%
CTGATACCATGTTGAAATTT+GGG + chr4_2:28288081-28288100 None:intergenic 30.0%
TCTGATACCATGTTGAAATT+TGG + chr4_2:28288082-28288101 None:intergenic 30.0%
GTTGAACAAACTATACTCAT+TGG + chr4_2:28288377-28288396 None:intergenic 30.0%
!!! GACTTGTTATTTGGTTTTGA+TGG - chr4_2:28288860-28288879 Msa0596800:CDS 30.0%
TCATAAACTAAATCTGCCAT+TGG + chr4_2:28289029-28289048 None:intergenic 30.0%
GTTTCAGGAAAATAAACTAG+AGG - chr4_2:28289229-28289248 Msa0596800:intron 30.0%
! ACTTGTGTTTCTTTTCTCTT+TGG - chr4_2:28289282-28289301 Msa0596800:intron 30.0%
TCAATATGTAGGTCTTTCAT+CGG + chr4_2:28289741-28289760 None:intergenic 30.0%
GAGTATAGAAGTCAATATGT+AGG + chr4_2:28289752-28289771 None:intergenic 30.0%
!!! TCTTGCCATATTTTTAGTCA+AGG - chr4_2:28290267-28290286 Msa0596800:intron 30.0%
!!! CTTGCCATATTTTTAGTCAA+GGG - chr4_2:28290268-28290287 Msa0596800:intron 30.0%
! ATTTTTACCAAAGTGAGCTT+TGG - chr4_2:28290394-28290413 Msa0596800:intron 30.0%
TTAAAATTTCTGCGATTTCC+TGG - chr4_2:28290454-28290473 Msa0596800:intron 30.0%
TAAAATTTCTGCGATTTCCT+GGG - chr4_2:28290455-28290474 Msa0596800:intron 30.0%
AATGAGTGAATTATATCCCT+GGG + chr4_2:28290482-28290501 None:intergenic 30.0%
AAATGAGTGAATTATATCCC+TGG + chr4_2:28290483-28290502 None:intergenic 30.0%
TGAAAAGTTATAGTTGGTTG+AGG + chr4_2:28290565-28290584 None:intergenic 30.0%
GGTAAGTGAAAAGTTATAGT+TGG + chr4_2:28290571-28290590 None:intergenic 30.0%
TTTCAACAAATGACTTCTGT+TGG + chr4_2:28290759-28290778 None:intergenic 30.0%
!! GCAATTTGAAGGCTTTATTT+AGG - chr4_2:28290805-28290824 Msa0596800:intron 30.0%
AGCTATTTATCAAAAGCAGA+AGG - chr4_2:28290956-28290975 Msa0596800:CDS 30.0%
! GGAATTGGTTCATATTTGTT+TGG - chr4_2:28291030-28291049 Msa0596800:CDS 30.0%
!!! CATCTTTGTGCTTTTTTTCA+CGG + chr4_2:28291100-28291119 None:intergenic 30.0%
! AACAATAGTTGATGCAACAA+TGG + chr4_2:28291149-28291168 None:intergenic 30.0%
AAAATGTTGTACCCTTTCAT+AGG + chr4_2:28291184-28291203 None:intergenic 30.0%
! GTTTGTTCATAAGCATTTTG+TGG - chr4_2:28291339-28291358 Msa0596800:exon 30.0%
AGGTTCAAGGCTAATTTATT+TGG + chr4_2:28291444-28291463 None:intergenic 30.0%
CCGGAGAAACAAAAATCTAA+GGG + chr4_2:28286362-28286381 None:intergenic 35.0%
!! CCCTTAGATTTTTGTTTCTC+CGG - chr4_2:28286359-28286378 Msa0596800:three_prime_UTR 35.0%
TCCGGAGAAACAAAAATCTA+AGG + chr4_2:28286363-28286382 None:intergenic 35.0%
!!! TTTTTTTTCCAGCAACATGG+AGG - chr4_2:28286423-28286442 Msa0596800:three_prime_UTR 35.0%
ATCAAAGATGTGTCTGATGT+CGG + chr4_2:28286593-28286612 None:intergenic 35.0%
! ACATCTTTGATCAGAAGTGT+TGG - chr4_2:28286602-28286621 Msa0596800:three_prime_UTR 35.0%
GGACTACTCAATAATTCTTC+AGG + chr4_2:28286750-28286769 None:intergenic 35.0%
! ACTTCAGAATCAACTTTTGG+AGG + chr4_2:28286771-28286790 None:intergenic 35.0%
AGTTGAAGTTCTTCATGAGA+AGG - chr4_2:28286788-28286807 Msa0596800:CDS 35.0%
AAGCATGTTGAATACTTGGA+AGG + chr4_2:28286852-28286871 None:intergenic 35.0%
! ACAGAAGCATGTTGAATACT+TGG + chr4_2:28286856-28286875 None:intergenic 35.0%
ATTCAACATGCTTCTGTAAG+TGG - chr4_2:28286859-28286878 Msa0596800:CDS 35.0%
! AGGTCTAGAATTGTTGAATG+TGG - chr4_2:28286982-28287001 Msa0596800:CDS 35.0%
ACTTGTTTGTGGGAATTGAA+CGG - chr4_2:28287037-28287056 Msa0596800:intron 35.0%
CACGGTAAACCAAAACATTT+GGG + chr4_2:28287319-28287338 None:intergenic 35.0%
TCACGGTAAACCAAAACATT+TGG + chr4_2:28287320-28287339 None:intergenic 35.0%
!!! AAATGTTTTGGTTTACCGTG+AGG - chr4_2:28287319-28287338 Msa0596800:intron 35.0%
ATTCATAACTATGACCTGGA+TGG - chr4_2:28287492-28287511 Msa0596800:intron 35.0%
TCTTGTGTCCATTGATCAAT+TGG - chr4_2:28287646-28287665 Msa0596800:intron 35.0%
ATTTAAGGACCAAACTCACT+AGG - chr4_2:28287890-28287909 Msa0596800:intron 35.0%
ATTCAAGGACTACAGTGTAT+TGG - chr4_2:28287951-28287970 Msa0596800:intron 35.0%
TTCAAGGACTACAGTGTATT+GGG - chr4_2:28287952-28287971 Msa0596800:intron 35.0%
CTAACTCATCCTTACAAAAC+CGG + chr4_2:28288056-28288075 None:intergenic 35.0%
CTAACTCATCCTTACAAAAC+CGG + chr4_2:28288056-28288075 None:intergenic 35.0%
TGTCACTGTGTTGAAATTTG+GGG + chr4_2:28288283-28288302 None:intergenic 35.0%
CTGTCACTGTGTTGAAATTT+GGG + chr4_2:28288284-28288303 None:intergenic 35.0%
AGTAAACAACAATGCGTCAA+GGG + chr4_2:28288307-28288326 None:intergenic 35.0%
AAGTAAACAACAATGCGTCA+AGG + chr4_2:28288308-28288327 None:intergenic 35.0%
ACAAACTATACTCATTGGCA+TGG + chr4_2:28288372-28288391 None:intergenic 35.0%
! TTGGGCTTGGTAATATTTAC+AGG + chr4_2:28288401-28288420 None:intergenic 35.0%
CTAACTCATCCTTACAAAAC+CGG + chr4_2:28288056-28288075 None:intergenic 35.0%
TGTCACTGTGTTGAAATTTG+GGG + chr4_2:28288283-28288302 None:intergenic 35.0%
CTGTCACTGTGTTGAAATTT+GGG + chr4_2:28288284-28288303 None:intergenic 35.0%
AGTAAACAACAATGCGTCAA+GGG + chr4_2:28288307-28288326 None:intergenic 35.0%
AAGTAAACAACAATGCGTCA+AGG + chr4_2:28288308-28288327 None:intergenic 35.0%
GTTGAACAAACTATGCTCAT+TGG + chr4_2:28288649-28288668 None:intergenic 35.0%
ACAGAGAAGAAAGAAATGAC+TGG - chr4_2:28288894-28288913 Msa0596800:intron 35.0%
!! AAGAAAGAAATGACTGGCTT+GGG - chr4_2:28288900-28288919 Msa0596800:intron 35.0%
GAATTAGGATATGGAAAGGA+AGG - chr4_2:28288978-28288997 Msa0596800:intron 35.0%
! TTTTCCAAATGTTCCACCAA+TGG - chr4_2:28289010-28289029 Msa0596800:intron 35.0%
TAAACTAAATCTGCCATTGG+TGG + chr4_2:28289026-28289045 None:intergenic 35.0%
GTTTATGAAGTTGAGCTCAT+TGG - chr4_2:28289041-28289060 Msa0596800:intron 35.0%
ATTAAATTGTTGCATGGTCG+CGG - chr4_2:28289093-28289112 Msa0596800:intron 35.0%
TCAGGAAAATAAACTAGAGG+AGG - chr4_2:28289232-28289251 Msa0596800:intron 35.0%
AACCATTTCATACTGTTGCA+TGG + chr4_2:28289258-28289277 None:intergenic 35.0%
!! GTTTGCTAAGTTGATTGTCT+TGG - chr4_2:28289363-28289382 Msa0596800:intron 35.0%
ACTTCATGTTCCAGTTGTTT+GGG - chr4_2:28289418-28289437 Msa0596800:intron 35.0%
TATCTACCATTGGAGTTCAA+TGG - chr4_2:28289813-28289832 Msa0596800:intron 35.0%
TTTAGTCCATTGAACTCCAA+TGG + chr4_2:28289822-28289841 None:intergenic 35.0%
! TTAAGTCCTTGGAGTTCTAA+GGG + chr4_2:28289882-28289901 None:intergenic 35.0%
TTTAAGTCCTTGGAGTTCTA+AGG + chr4_2:28289883-28289902 None:intergenic 35.0%
! TCAAAGTCATGCTGTTTGAT+TGG - chr4_2:28289936-28289955 Msa0596800:intron 35.0%
TATGGCAAGATATGCTTAGT+AGG + chr4_2:28290257-28290276 None:intergenic 35.0%
TTACAATCCAAAGCTCACTT+TGG + chr4_2:28290404-28290423 None:intergenic 35.0%
CTATCATGGGAATGAAAAAG+CGG + chr4_2:28290509-28290528 None:intergenic 35.0%
GAAATGTCTCACTCTATCAT+GGG + chr4_2:28290522-28290541 None:intergenic 35.0%
ATAGAGTGAGACATTTCCAT+GGG - chr4_2:28290525-28290544 Msa0596800:intron 35.0%
AAAGTTATAGTTGGTTGAGG+AGG + chr4_2:28290562-28290581 None:intergenic 35.0%
! AGTCATTTGTTGAAACTTGC+AGG - chr4_2:28290764-28290783 Msa0596800:intron 35.0%
AAACTTGCAGGTATTAAGTG+AGG - chr4_2:28290776-28290795 Msa0596800:intron 35.0%
!! TTGAAGGCTTTATTTAGGAG+AGG - chr4_2:28290810-28290829 Msa0596800:intron 35.0%
!! AGCTTTTAGAAAATCTTCCC+TGG + chr4_2:28290871-28290890 None:intergenic 35.0%
CTTGCAATTGCTTTATCTTC+AGG + chr4_2:28290906-28290925 None:intergenic 35.0%
AAGCAGAAGGAGATCTATAA+AGG - chr4_2:28290969-28290988 Msa0596800:CDS 35.0%
! ATGAACCAATTCCTTTTCTG+TGG + chr4_2:28291023-28291042 None:intergenic 35.0%
! TTTTTCACGGTTGAAAAGTG+TGG + chr4_2:28291087-28291106 None:intergenic 35.0%
! TACAACATTTTGAGCTACTG+AGG - chr4_2:28291193-28291212 Msa0596800:intron 35.0%
TGTCAAACACGATTACTCTA+TGG + chr4_2:28291289-28291308 None:intergenic 35.0%
TGGTAGCAATTACAAGGTTA+GGG + chr4_2:28291401-28291420 None:intergenic 35.0%
! TTGGTAGCAATTACAAGGTT+AGG + chr4_2:28291402-28291421 None:intergenic 35.0%
TAAACAAGGTACATGTCTGT+TGG + chr4_2:28291421-28291440 None:intergenic 35.0%
TCTAAGGGAGAGAGAAATTG+AGG + chr4_2:28286347-28286366 None:intergenic 40.0%
TCTCAACCACAATCAAAACC+AGG - chr4_2:28286457-28286476 Msa0596800:three_prime_UTR 40.0%
AGAGCTCATAAGAAGAGTAG+AGG + chr4_2:28287434-28287453 None:intergenic 40.0%
ACTATGACCTGGATGGTTTA+TGG - chr4_2:28287499-28287518 Msa0596800:intron 40.0%
TTATGGTGGTAGTCCATTAC+AGG - chr4_2:28287516-28287535 Msa0596800:intron 40.0%
TATGGTGGTAGTCCATTACA+GGG - chr4_2:28287517-28287536 Msa0596800:intron 40.0%
CGACCAATTGAGATGGTAAT+AGG - chr4_2:28287590-28287609 Msa0596800:intron 40.0%
TGGTGGCTTAATGTGTAAGA+CGG - chr4_2:28287777-28287796 Msa0596800:intron 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG - chr4_2:28288054-28288073 Msa0596800:intron 40.0%
TTAGGCCCCAAATTTCAACA+TGG - chr4_2:28288072-28288091 Msa0596800:intron 40.0%
TCAGAGCTTGTCGAATTCAA+AGG - chr4_2:28288097-28288116 Msa0596800:intron 40.0%
GCTGTCACTGTGTTGAAATT+TGG + chr4_2:28288285-28288304 None:intergenic 40.0%
GCTGTCACTGTGTTGAAATT+TGG + chr4_2:28288285-28288304 None:intergenic 40.0%
ACAAACTATGCTCATTGGCA+TGG + chr4_2:28288644-28288663 None:intergenic 40.0%
! TGTCATTTGCCAGAACTCAT+TGG + chr4_2:28288700-28288719 None:intergenic 40.0%
! AATGAGTTCTGGCAAATGAC+AGG - chr4_2:28288699-28288718 Msa0596800:intron 40.0%
! ATGAGTTCTGGCAAATGACA+GGG - chr4_2:28288700-28288719 Msa0596800:intron 40.0%
TTATGACATCTAGCGTAGTG+TGG - chr4_2:28288791-28288810 Msa0596800:CDS 40.0%
! GAAGAAAGAAATGACTGGCT+TGG - chr4_2:28288899-28288918 Msa0596800:intron 40.0%
CTGGGAATTAGGATATGGAA+AGG - chr4_2:28288974-28288993 Msa0596800:intron 40.0%
GTGATATGACTGTAGAGGAA+CGG - chr4_2:28289165-28289184 Msa0596800:intron 40.0%
GGATGGAAATGTTCTGTTTC+AGG - chr4_2:28289214-28289233 Msa0596800:intron 40.0%
TGATTGTCTTGGTTCATGTC+AGG - chr4_2:28289374-28289393 Msa0596800:intron 40.0%
GACTTCATGTTCCAGTTGTT+TGG - chr4_2:28289417-28289436 Msa0596800:intron 40.0%
! TCCAGTTGTTTGGGAAGTAT+AGG - chr4_2:28289427-28289446 Msa0596800:intron 40.0%
! CCAGTTGTTTGGGAAGTATA+GGG - chr4_2:28289428-28289447 Msa0596800:intron 40.0%
! GTTTGGGAAGTATAGGGATA+TGG - chr4_2:28289434-28289453 Msa0596800:intron 40.0%
GAATCCATGCCATCTTAACA+CGG - chr4_2:28289470-28289489 Msa0596800:intron 40.0%
AACCGCTATGAAGAAGCTAT+AGG - chr4_2:28289513-28289532 Msa0596800:intron 40.0%
GTCCTATAGCTTCTTCATAG+CGG + chr4_2:28289518-28289537 None:intergenic 40.0%
GATAGAGGGACGAAATTGAT+TGG + chr4_2:28289687-28289706 None:intergenic 40.0%
!!! AGGTCTTTCATCGGTTTTGA+TGG + chr4_2:28289732-28289751 None:intergenic 40.0%
TCACTCAGCATTTAAGTCCT+TGG + chr4_2:28289893-28289912 None:intergenic 40.0%
AGTAGACTCAACCCAAAACT+CGG + chr4_2:28290020-28290039 None:intergenic 40.0%
!! TGCTCACACTTTTTGTCGTA+AGG - chr4_2:28290123-28290142 Msa0596800:intron 40.0%
CTGTCTAAGAATGCTTTCAC+TGG + chr4_2:28290218-28290237 None:intergenic 40.0%
GGAAATGTCTCACTCTATCA+TGG + chr4_2:28290523-28290542 None:intergenic 40.0%
GATAGAGTGAGACATTTCCA+TGG - chr4_2:28290524-28290543 Msa0596800:intron 40.0%
TGAGGATGAGAGCAATTTGA+AGG - chr4_2:28290794-28290813 Msa0596800:intron 40.0%
!! GGCTTTATTTAGGAGAGGTA+AGG - chr4_2:28290815-28290834 Msa0596800:intron 40.0%
! CAATTCCTTTTCTGTGGTAC+TGG + chr4_2:28291017-28291036 None:intergenic 40.0%
CAGTACCACAGAAAAGGAAT+TGG - chr4_2:28291015-28291034 Msa0596800:CDS 40.0%
GGTTCATATTTGTTTGGCAG+TGG - chr4_2:28291036-28291055 Msa0596800:CDS 40.0%
CATATTTGTTTGGCAGTGGT+TGG - chr4_2:28291040-28291059 Msa0596800:CDS 40.0%
TATGTGCATCCACCTATGAA+AGG - chr4_2:28291169-28291188 Msa0596800:intron 40.0%
ATGTGCATCCACCTATGAAA+GGG - chr4_2:28291170-28291189 Msa0596800:intron 40.0%
ATGTTGTACCCTTTCATAGG+TGG + chr4_2:28291181-28291200 None:intergenic 40.0%
!! GTCTGTTGGTAGCAATTACA+AGG + chr4_2:28291407-28291426 None:intergenic 40.0%
TTGAACTTCCTCCATGTTGC+TGG + chr4_2:28286434-28286453 None:intergenic 45.0%
TGTTGCGTCAGTGTTGTATC+TGG + chr4_2:28286521-28286540 None:intergenic 45.0%
!! GAAGTGTTGGTGTTACAGAG+AGG - chr4_2:28286615-28286634 Msa0596800:three_prime_UTR 45.0%
AGTCGTGTATCAGTCCTGTT+TGG - chr4_2:28287196-28287215 Msa0596800:intron 45.0%
ACTGAATGTGGGAACATGCT+AGG - chr4_2:28287360-28287379 Msa0596800:intron 45.0%
ATGACCTGGATGGTTTATGG+TGG - chr4_2:28287502-28287521 Msa0596800:intron 45.0%
ACTACCACCATAAACCATCC+AGG + chr4_2:28287509-28287528 None:intergenic 45.0%
GCATCTTGTCCTAGTGAGTT+TGG + chr4_2:28287902-28287921 None:intergenic 45.0%
GAAAAACCCAAGTCCCACAT+CGG - chr4_2:28287974-28287993 Msa0596800:intron 45.0%
ATCTATCCGATGTGGGACTT+GGG + chr4_2:28287983-28288002 None:intergenic 45.0%
GAGTCTCATCTATCCGATGT+GGG + chr4_2:28287990-28288009 None:intergenic 45.0%
AGAGTCTCATCTATCCGATG+TGG + chr4_2:28287991-28288010 None:intergenic 45.0%
!! CCTTACAAAACCGGCTTGTA+AGG + chr4_2:28288047-28288066 None:intergenic 45.0%
!! CCTTACAAGCCGGTTTTGTA+AGG - chr4_2:28288044-28288063 Msa0596800:intron 45.0%
TTGGTACGTGAATAGGTAGG+CGG + chr4_2:28288123-28288142 None:intergenic 45.0%
! TTTGGGCTTGGTACGTGAAT+AGG + chr4_2:28288130-28288149 None:intergenic 45.0%
GAAAAACCCAAGTCCCACAT+CGG - chr4_2:28287974-28287993 Msa0596800:intron 45.0%
ATCTATCCGATGTGGGACTT+GGG + chr4_2:28287983-28288002 None:intergenic 45.0%
CAGTCTCATCTATCCGATGT+GGG + chr4_2:28288194-28288213 None:intergenic 45.0%
ACAGTCTCATCTATCCGATG+TGG + chr4_2:28288195-28288214 None:intergenic 45.0%
!! CCTTACAAAACCGGCTTGTA+AGG + chr4_2:28288047-28288066 None:intergenic 45.0%
!! CCTTACAAGCCGGTTTTGTA+AGG - chr4_2:28288044-28288063 Msa0596800:intron 45.0%
GAAAAACCCAAGTCCCACAT+CGG - chr4_2:28287974-28287993 Msa0596800:intron 45.0%
ATCTATCCGATGTGGGACTT+GGG + chr4_2:28287983-28288002 None:intergenic 45.0%
CAGTCTCATCTATCCGATGT+GGG + chr4_2:28288194-28288213 None:intergenic 45.0%
ACAGTCTCATCTATCCGATG+TGG + chr4_2:28288195-28288214 None:intergenic 45.0%
!! CCTTACAAAACCGGCTTGTA+AGG + chr4_2:28288047-28288066 None:intergenic 45.0%
!! CCTTACAAGCCGGTTTTGTA+AGG - chr4_2:28288044-28288063 Msa0596800:intron 45.0%
GTATCCATGCCAATGAGTTC+TGG - chr4_2:28288688-28288707 Msa0596800:intron 45.0%
TTTGCCAGAACTCATTGGCA+TGG + chr4_2:28288695-28288714 None:intergenic 45.0%
!! AAATGACTGGCTTGGGCATT+GGG - chr4_2:28288907-28288926 Msa0596800:intron 45.0%
GTGAGCTGGGAATTAGGATA+TGG - chr4_2:28288969-28288988 Msa0596800:intron 45.0%
TCTGCCATTGGTGGAACATT+TGG + chr4_2:28289017-28289036 None:intergenic 45.0%
TCGCAGTGATATGACTGTAG+AGG - chr4_2:28289160-28289179 Msa0596800:intron 45.0%
ATGACTGTAGAGGAACGGAT+TGG - chr4_2:28289170-28289189 Msa0596800:intron 45.0%
! TGACTGTAGAGGAACGGATT+GGG - chr4_2:28289171-28289190 Msa0596800:intron 45.0%
GGCCATGCAACAGTATGAAA+TGG - chr4_2:28289253-28289272 Msa0596800:intron 45.0%
ATGTCAGGCCATAGCTTACA+TGG - chr4_2:28289389-28289408 Msa0596800:intron 45.0%
TGTCAGGCCATAGCTTACAT+GGG - chr4_2:28289390-28289409 Msa0596800:intron 45.0%
GTCATCTCCCATGTAAGCTA+TGG + chr4_2:28289400-28289419 None:intergenic 45.0%
CCCTATACTTCCCAAACAAC+TGG + chr4_2:28289431-28289450 None:intergenic 45.0%
GAAGTATAGGGATATGGCTC+TGG - chr4_2:28289440-28289459 Msa0596800:intron 45.0%
AGCATGAGCGCACAATATTG+AGG - chr4_2:28290068-28290087 Msa0596800:intron 45.0%
GCATTCTTAGACAGAAGCTG+TGG - chr4_2:28290224-28290243 Msa0596800:CDS 45.0%
GGAGGTAATTTCTACTCCCA+TGG + chr4_2:28290544-28290563 None:intergenic 45.0%
!!! CTTTTCTGTGGTACTGGTTC+AGG + chr4_2:28291011-28291030 None:intergenic 45.0%
CTGAACCAGTACCACAGAAA+AGG - chr4_2:28291009-28291028 Msa0596800:CDS 45.0%
GGAGCAACGACCAATTGAGA+TGG - chr4_2:28287583-28287602 Msa0596800:intron 50.0%
CATCTATCCGATGTGGGACT+TGG + chr4_2:28287984-28288003 None:intergenic 50.0%
!! CAAAACCGGCTTGTAAGGTG+AGG + chr4_2:28288042-28288061 None:intergenic 50.0%
! GGCTTGGTACGTGAATAGGT+AGG + chr4_2:28288126-28288145 None:intergenic 50.0%
!! TACCAAGCCCAAAGAGTGCT+GGG - chr4_2:28288137-28288156 Msa0596800:intron 50.0%
CATCTATCCGATGTGGGACT+TGG + chr4_2:28287984-28288003 None:intergenic 50.0%
!! CAAAACCGGCTTGTAAGGTG+AGG + chr4_2:28288042-28288061 None:intergenic 50.0%
! TTACCAAGCCCAAAGAGTGC+TGG - chr4_2:28288408-28288427 Msa0596800:intron 50.0%
!! TACCAAGCCCAAAGAGTGCT+GGG - chr4_2:28288137-28288156 Msa0596800:intron 50.0%
CATCTATCCGATGTGGGACT+TGG + chr4_2:28287984-28288003 None:intergenic 50.0%
!! CAAAACCGGCTTGTAAGGTG+AGG + chr4_2:28288042-28288061 None:intergenic 50.0%
!! GAAATGACTGGCTTGGGCAT+TGG - chr4_2:28288906-28288925 Msa0596800:intron 50.0%
!! AATGACTGGCTTGGGCATTG+GGG - chr4_2:28288908-28288927 Msa0596800:intron 50.0%
!! GACTGTAGAGGAACGGATTG+GGG - chr4_2:28289172-28289191 Msa0596800:intron 50.0%
GCAGATCGGAGAAAGATGGA+TGG - chr4_2:28289197-28289216 Msa0596800:intron 50.0%
TCCATGCCATCTTAACACGG+CGG - chr4_2:28289473-28289492 Msa0596800:intron 50.0%
GCGGTTCAGCTTAATCAGAC+AGG + chr4_2:28289499-28289518 None:intergenic 50.0%
TACCGACCCTTAGAACTCCA+AGG - chr4_2:28289873-28289892 Msa0596800:intron 50.0%
!! GTCCTTGGAGTTCTAAGGGT+CGG + chr4_2:28289878-28289897 None:intergenic 50.0%
GAATTATATCCCTGGGACCC+AGG + chr4_2:28290475-28290494 None:intergenic 50.0%
GTAAGGCTAGAGCAGCACTT+GGG - chr4_2:28290832-28290851 Msa0596800:intron 50.0%
!! TGTGGTACTGGTTCAGGTCT+TGG + chr4_2:28291005-28291024 None:intergenic 50.0%
GGAACGGCTTTCGTCGTATC+TGG - chr4_2:28287104-28287123 Msa0596800:intron 55.0%
TGGTAGTCCATTACAGGGCG+TGG - chr4_2:28287522-28287541 Msa0596800:intron 55.0%
TCTCAGACCACGCCCTGTAA+TGG + chr4_2:28287532-28287551 None:intergenic 55.0%
GCACTCCTCACCTTACAAGC+CGG - chr4_2:28288034-28288053 Msa0596800:intron 55.0%
! GTACCAAGCCCAAAGAGTGC+TGG - chr4_2:28288136-28288155 Msa0596800:intron 55.0%
! TGGGCGTGAGGAGGTGTATT+GGG - chr4_2:28288156-28288175 Msa0596800:intron 55.0%
GCACTCCTCACCTTACAAGC+CGG - chr4_2:28288034-28288053 Msa0596800:intron 55.0%
! TGGGCGTGAGGAGGTGTATT+GGG - chr4_2:28288156-28288175 Msa0596800:intron 55.0%
GCACTCCTCACCTTACAAGC+CGG - chr4_2:28288034-28288053 Msa0596800:intron 55.0%
GGGTGGCAAGCATGAAAGCT+GGG - chr4_2:28288928-28288947 Msa0596800:intron 55.0%
GGTGGCAAGCATGAAAGCTG+GGG - chr4_2:28288929-28288948 Msa0596800:intron 55.0%
CTGCGTGTGAGCTGGGAATT+AGG - chr4_2:28288963-28288982 Msa0596800:intron 55.0%
!! AACGGATTGGGGCAGCAGAT+CGG - chr4_2:28289183-28289202 Msa0596800:intron 55.0%
GGCAGCAGATCGGAGAAAGA+TGG - chr4_2:28289193-28289212 Msa0596800:intron 55.0%
GGTAAGGCTAGAGCAGCACT+TGG - chr4_2:28290831-28290850 Msa0596800:intron 55.0%
TTGGGCAGACAGATGTTGCC+AGG - chr4_2:28290850-28290869 Msa0596800:intron 55.0%
TGGGCAGACAGATGTTGCCA+GGG - chr4_2:28290851-28290870 Msa0596800:intron 55.0%
CAGGGCGTGGTCTGAGAACA+CGG - chr4_2:28287535-28287554 Msa0596800:intron 60.0%
CCTCACGCCCAGCACTCTTT+GGG + chr4_2:28288147-28288166 None:intergenic 60.0%
TCCTCACGCCCAGCACTCTT+TGG + chr4_2:28288148-28288167 None:intergenic 60.0%
!! AAAGAGTGCTGGGCGTGAGG+AGG - chr4_2:28288147-28288166 Msa0596800:intron 60.0%
! CTGGGCGTGAGGAGGTGTAT+TGG - chr4_2:28288155-28288174 Msa0596800:intron 60.0%
CCTCACGCCCAGCACTCTTT+GGG + chr4_2:28288147-28288166 None:intergenic 60.0%
TCCTCACGCCCAGCACTCTT+TGG + chr4_2:28288148-28288167 None:intergenic 60.0%
!! AAAGAGTGCTGGGCGTGAGG+AGG - chr4_2:28288147-28288166 Msa0596800:intron 60.0%
! CTGGGCGTGAGGAGGTGTAT+TGG - chr4_2:28288155-28288174 Msa0596800:intron 60.0%
GGGGTGGCAAGCATGAAAGC+TGG - chr4_2:28288927-28288946 Msa0596800:intron 60.0%
AGCGTTGCTGCGTGTGAGCT+GGG - chr4_2:28288956-28288975 Msa0596800:intron 60.0%
GCCGCCGTGTTAAGATGGCA+TGG + chr4_2:28289477-28289496 None:intergenic 60.0%
GACAGGCCGCCGTGTTAAGA+TGG + chr4_2:28289482-28289501 None:intergenic 60.0%
TCTGCGATTTCCTGGGTCCC+AGG - chr4_2:28290462-28290481 Msa0596800:intron 60.0%
CTGCGATTTCCTGGGTCCCA+GGG - chr4_2:28290463-28290482 Msa0596800:intron 60.0%
CGCCCAGCACTCTTTGGGCT+TGG + chr4_2:28288142-28288161 None:intergenic 65.0%
!! CCCAAAGAGTGCTGGGCGTG+AGG - chr4_2:28288144-28288163 Msa0596800:intron 65.0%
CGCCCAGCACTCTTTGGGCT+TGG + chr4_2:28288142-28288161 None:intergenic 65.0%
!! CCCAAAGAGTGCTGGGCGTG+AGG - chr4_2:28288144-28288163 Msa0596800:intron 65.0%
!! GACTGGCTTGGGCATTGGGG+TGG - chr4_2:28288911-28288930 Msa0596800:intron 65.0%
! GAGCGTTGCTGCGTGTGAGC+TGG - chr4_2:28288955-28288974 Msa0596800:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 28286318 28291471 28286318 ID=Msa0596800;Name=Msa0596800
chr4_2 mRNA 28286318 28291471 28286318 ID=Msa0596800-mRNA-1;Parent=Msa0596800;Name=Msa0596800-mRNA-1;_AED=0.10;_eAED=0.10;_QI=121|0.83|0.85|1|0.83|0.57|7|347|344
chr4_2 exon 28286318 28287003 28286318 ID=Msa0596800-mRNA-1:exon:7297;Parent=Msa0596800-mRNA-1
chr4_2 exon 28288325 28288393 28288325 ID=Msa0596800-mRNA-1:exon:7296;Parent=Msa0596800-mRNA-1
chr4_2 exon 28288515 28288637 28288515 ID=Msa0596800-mRNA-1:exon:7295;Parent=Msa0596800-mRNA-1
chr4_2 exon 28288707 28288891 28288707 ID=Msa0596800-mRNA-1:exon:7294;Parent=Msa0596800-mRNA-1
chr4_2 exon 28290172 28290261 28290172 ID=Msa0596800-mRNA-1:exon:7293;Parent=Msa0596800-mRNA-1
chr4_2 exon 28290916 28291104 28290916 ID=Msa0596800-mRNA-1:exon:7292;Parent=Msa0596800-mRNA-1
chr4_2 exon 28291311 28291471 28291311 ID=Msa0596800-mRNA-1:exon:7291;Parent=Msa0596800-mRNA-1
chr4_2 five_prime_UTR 28291351 28291471 28291351 ID=Msa0596800-mRNA-1:five_prime_utr;Parent=Msa0596800-mRNA-1
chr4_2 CDS 28291311 28291350 28291311 ID=Msa0596800-mRNA-1:cds;Parent=Msa0596800-mRNA-1
chr4_2 CDS 28290916 28291104 28290916 ID=Msa0596800-mRNA-1:cds;Parent=Msa0596800-mRNA-1
chr4_2 CDS 28290172 28290261 28290172 ID=Msa0596800-mRNA-1:cds;Parent=Msa0596800-mRNA-1
chr4_2 CDS 28288707 28288891 28288707 ID=Msa0596800-mRNA-1:cds;Parent=Msa0596800-mRNA-1
chr4_2 CDS 28288515 28288637 28288515 ID=Msa0596800-mRNA-1:cds;Parent=Msa0596800-mRNA-1
chr4_2 CDS 28288325 28288393 28288325 ID=Msa0596800-mRNA-1:cds;Parent=Msa0596800-mRNA-1
chr4_2 CDS 28286665 28287003 28286665 ID=Msa0596800-mRNA-1:cds;Parent=Msa0596800-mRNA-1
chr4_2 three_prime_UTR 28286318 28286664 28286318 ID=Msa0596800-mRNA-1:three_prime_utr;Parent=Msa0596800-mRNA-1
Gene Sequence

>Msa0596800

ATGGAGGAAGTTCAAGAGTCTCAACCACAATCAAAACCAGGTCAAGAAAATAATGTAGATGAAGTGATTGATGAAAGTACTGAATATGCAAAAGGGGAAACACCTGAAGAATTATTGAGTAGTCCTCCAAAAGTTGATTCTGAAGTTGAAGTTCTTCATGAGAAGGTTACAAAACAAATTATTAAGGAAGGTCATGGGCAGAAACCTTCCAAGTATTCAACATGCTTCTTCCATTACAGGGCGTGGTCTGAGAACACGGAGCATAAATTTGAAGATACATGGCAGGAGCAACGACCAATTGAGATGGTAATAGGAAAAGAGAAGAAAGAAATGACTGGCTTGGGCATTGGGGTGGCAAGCATGAAAGCTGGGGAACGAGCGTTGCTGCGTGTGAGCTGGGAATTAGGATATGGAAAGGAAGGAAGCTTTTCTTTTCCAAATGTTCCACCAATGGCAGATTTAGTTTATGAAGTTGAGCTCATTGGATTTGATGAAACAAAAGATGGAAAAGCTCGCAGTGATATGACTGTAGAGGAACGGATTGGGGCAGCAGATCGGAGAAAGATGGATGGAAATGTTCTGTTTCAGGAAAATAAACTAGAGGAGGCCATGCAACAGTATGAAATGGCCATAGCTTACATGGGAGATGACTTCATGTTCCAGTTGTTTGGGAAGTATAGGGATATGGCTCTGGCTGTATTAAGTGAGGATGAGAGCAATTTGAAGGCTTTATTTAGGAGAGGTAAGGCTAGAGCAGCACTTGGGCAGACAGATGTTGCCAGGGAAGATTTTCTAAAAGCTCGTAAGCATGCACCTGAAGATAAAGCAATTGCAAGAGAATTGAAGCTACTTGCTGAACATGATAAAGCTATTTATCAAAAGCAGAAGGAGATCTATAAAGGAATATTTGGACCAAGACCTGAACCAGTACCACAGAAAAGGAATTGGTTCATATTTGTTTGGCAGTGGTTGGTTTCAGTGTTTCATAGCTTTACCACACTTTTCAACCGTGAAAAAAAGCACAAAGATGACTAA

Protein sequence

>Msa0596800

MEEVQESQPQSKPGQENNVDEVIDESTEYAKGETPEELLSSPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFFHYRAWSENTEHKFEDTWQEQRPIEMVIGKEKKEMTGLGIGVASMKAGERALLRVSWELGYGKEGSFSFPNVPPMADLVYEVELIGFDETKDGKARSDMTVEERIGAADRRKMDGNVLFQENKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVLSEDESNLKALFRRGKARAALGQTDVAREDFLKARKHAPEDKAIARELKLLAEHDKAIYQKQKEIYKGIFGPRPEPVPQKRNWFIFVWQWLVSVFHSFTTLFNREKKHKDD*