Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629650 | KEH28856.1 | 98.268 | 231 | 4 | 0 | 3 | 233 | 145 | 375 | 1.10e-164 | 469 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629650 | sp|Q8S4F6|SQD2_ARATH | 72.926 | 229 | 62 | 0 | 3 | 231 | 279 | 507 | 4.90e-123 | 361 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007440 | Msa0629650 | 0.819836 | 9.421799e-53 | -8.615850e-47 |
| Msa0015140 | Msa0629650 | 0.801652 | 8.139214e-49 | -8.615850e-47 |
| Msa0015460 | Msa0629650 | 0.813106 | 3.027684e-51 | -8.615850e-47 |
| Msa0028660 | Msa0629650 | 0.801244 | 9.868271e-49 | -8.615850e-47 |
| Msa0037540 | Msa0629650 | -0.840456 | 8.602637e-58 | -8.615850e-47 |
| Msa0037590 | Msa0629650 | -0.840298 | 9.457712e-58 | -8.615850e-47 |
| Msa0043730 | Msa0629650 | 0.833565 | 4.956898e-56 | -8.615850e-47 |
| Msa0054750 | Msa0629650 | 0.810560 | 1.084775e-50 | -8.615850e-47 |
| Msa0056030 | Msa0629650 | 0.804220 | 2.398340e-49 | -8.615850e-47 |
| Msa0076670 | Msa0629650 | 0.841287 | 5.207059e-58 | -8.615850e-47 |
| Msa0082680 | Msa0629650 | -0.822365 | 2.463198e-53 | -8.615850e-47 |
| Msa0096030 | Msa0629650 | 0.830385 | 3.025398e-55 | -8.615850e-47 |
| Msa0101880 | Msa0629650 | 0.817463 | 3.254893e-52 | -8.615850e-47 |
| Msa0104700 | Msa0629650 | 0.806855 | 6.717330e-50 | -8.615850e-47 |
| Msa0109590 | Msa0629650 | 0.815417 | 9.346872e-52 | -8.615850e-47 |
| Msa0620620 | Msa0629650 | 0.802670 | 5.026062e-49 | -8.615850e-47 |
| Msa0622100 | Msa0629650 | 0.813998 | 1.926582e-51 | -8.615850e-47 |
| Msa0629630 | Msa0629650 | 0.843403 | 1.432075e-58 | -8.615850e-47 |
| Msa0629650 | Msa0636660 | 0.801113 | 1.049507e-48 | -8.615850e-47 |
| Msa0629650 | Msa0638280 | 0.803620 | 3.195160e-49 | -8.615850e-47 |
| Msa0629650 | Msa0638320 | 0.805964 | 1.035275e-49 | -8.615850e-47 |
| Msa0629650 | Msa0649350 | 0.814000 | 1.924862e-51 | -8.615850e-47 |
| Msa0629650 | Msa0654010 | 0.813967 | 1.957652e-51 | -8.615850e-47 |
| Msa0629650 | Msa0661190 | -0.822221 | 2.659650e-53 | -8.615850e-47 |
| Msa0629650 | Msa0661210 | 0.802347 | 5.857202e-49 | -8.615850e-47 |
| Msa0629650 | Msa0661710 | 0.820415 | 6.941796e-53 | -8.615850e-47 |
| Msa0629650 | Msa0664970 | 0.828611 | 8.167380e-55 | -8.615850e-47 |
| Msa0629650 | Msa0667460 | 0.877952 | 4.156361e-69 | -8.615850e-47 |
| Msa0629650 | Msa0677270 | 0.801969 | 7.005143e-49 | -8.615850e-47 |
| Msa0629650 | Msa0683600 | 0.805710 | 1.170572e-49 | -8.615850e-47 |
| Msa0629650 | Msa0688390 | 0.821233 | 4.502853e-53 | -8.615850e-47 |
| Msa0629650 | Msa0705820 | 0.806497 | 7.993347e-50 | -8.615850e-47 |
| Msa0629650 | Msa0715410 | 0.817125 | 3.878769e-52 | -8.615850e-47 |
| Msa0629650 | Msa0722920 | 0.806484 | 8.042394e-50 | -8.615850e-47 |
| Msa0629650 | Msa0723130 | 0.816504 | 5.344718e-52 | -8.615850e-47 |
| Msa0629650 | Msa0748070 | 0.828944 | 6.781796e-55 | -8.615850e-47 |
| Msa0629650 | Msa0749440 | 0.803015 | 4.265362e-49 | -8.615850e-47 |
| Msa0629650 | Msa0751850 | 0.802279 | 6.049144e-49 | -8.615850e-47 |
| Msa0629650 | Msa0790440 | -0.819084 | 1.398288e-52 | -8.615850e-47 |
| Msa0629650 | Msa0795720 | 0.800080 | 1.704356e-48 | -8.615850e-47 |
| Msa0629650 | Msa0826760 | 0.825361 | 4.887914e-54 | -8.615850e-47 |
| Msa0629650 | Msa0831850 | 0.800638 | 1.312056e-48 | -8.615850e-47 |
| Msa0629650 | Msa0833460 | 0.826302 | 2.922856e-54 | -8.615850e-47 |
| Msa0629650 | Msa0861470 | 0.808098 | 3.659849e-50 | -8.615850e-47 |
| Msa0629650 | Msa0861570 | 0.808224 | 3.440607e-50 | -8.615850e-47 |
| Msa0629650 | Msa0865890 | 0.813967 | 1.957633e-51 | -8.615850e-47 |
| Msa0629650 | Msa0870150 | 0.811209 | 7.851097e-51 | -8.615850e-47 |
| Msa0629650 | Msa0901320 | 0.854305 | 1.345009e-61 | -8.615850e-47 |
| Msa0629650 | Msa0937330 | 0.814645 | 1.386607e-51 | -8.615850e-47 |
| Msa0629650 | Msa0942550 | -0.803289 | 3.742394e-49 | -8.615850e-47 |
| Msa0629650 | Msa0951400 | 0.811015 | 8.649154e-51 | -8.615850e-47 |
| Msa0629650 | Msa0960740 | 0.811031 | 8.578797e-51 | -8.615850e-47 |
| Msa0629650 | Msa0966630 | 0.809749 | 1.622407e-50 | -8.615850e-47 |
| Msa0629650 | Msa0980020 | 0.809439 | 1.891113e-50 | -8.615850e-47 |
| Msa0629650 | Msa0994390 | 0.830380 | 3.033989e-55 | -8.615850e-47 |
| Msa0629650 | Msa1001080 | 0.847746 | 9.517823e-60 | -8.615850e-47 |
| Msa0629650 | Msa1012830 | 0.808506 | 2.995844e-50 | -8.615850e-47 |
| Msa0629650 | Msa1021510 | 0.807265 | 5.499200e-50 | -8.615850e-47 |
| Msa0629650 | Msa1025080 | 0.831734 | 1.411611e-55 | -8.615850e-47 |
| Msa0629650 | Msa1063690 | 0.807970 | 3.896419e-50 | -8.615850e-47 |
| Msa0629650 | Msa1064250 | 0.839415 | 1.606038e-57 | -8.615850e-47 |
| Msa0629650 | Msa1071320 | 0.805724 | 1.162757e-49 | -8.615850e-47 |
| Msa0629650 | Msa1077670 | 0.807940 | 3.953398e-50 | -8.615850e-47 |
| Msa0629650 | Msa1080800 | 0.815797 | 7.690546e-52 | -8.615850e-47 |
| Msa0629650 | Msa1089040 | 0.813439 | 2.558068e-51 | -8.615850e-47 |
| Msa0629650 | Msa1094430 | 0.807230 | 5.593935e-50 | -8.615850e-47 |
| Msa0629650 | Msa1103660 | -0.808500 | 3.004774e-50 | -8.615850e-47 |
| Msa0629650 | Msa1103980 | 0.823008 | 1.745176e-53 | -8.615850e-47 |
| Msa0629650 | Msa1105500 | 0.821661 | 3.586102e-53 | -8.615850e-47 |
| Msa0629650 | Msa1109090 | 0.830145 | 3.463705e-55 | -8.615850e-47 |
| Msa0629650 | Msa1115240 | 0.800214 | 1.601066e-48 | -8.615850e-47 |
| Msa0629650 | Msa1118940 | 0.801392 | 9.199470e-49 | -8.615850e-47 |
| Msa0629650 | Msa1127190 | 0.813405 | 2.602471e-51 | -8.615850e-47 |
| Msa0629650 | Msa1127830 | 0.831758 | 1.392138e-55 | -8.615850e-47 |
| Msa0629650 | Msa1152920 | 0.836833 | 7.420246e-57 | -8.615850e-47 |
| Msa0629650 | Msa1163540 | 0.805969 | 1.032487e-49 | -8.615850e-47 |
| Msa0629650 | Msa1164590 | 0.808598 | 2.863260e-50 | -8.615850e-47 |
| Msa0629650 | Msa1173500 | 0.822529 | 2.256630e-53 | -8.615850e-47 |
| Msa0629650 | Msa1174870 | 0.812587 | 3.933234e-51 | -8.615850e-47 |
| Msa0629650 | Msa1216350 | 0.804863 | 1.761298e-49 | -8.615850e-47 |
| Msa0629650 | Msa1219810 | 0.838064 | 3.589879e-57 | -8.615850e-47 |
| Msa0629650 | Msa1234690 | 0.811743 | 6.009336e-51 | -8.615850e-47 |
| Msa0629650 | Msa1234730 | 0.822701 | 2.057875e-53 | -8.615850e-47 |
| Msa0629650 | Msa1267060 | 0.802272 | 6.070850e-49 | -8.615850e-47 |
| Msa0629650 | Msa1301650 | 0.806709 | 7.212185e-50 | -8.615850e-47 |
| Msa0629650 | Msa1306560 | 0.846835 | 1.692127e-59 | -8.615850e-47 |
| Msa0629650 | Msa1315110 | 0.831077 | 2.047815e-55 | -8.615850e-47 |
| Msa0629650 | Msa1355890 | 0.823185 | 1.587340e-53 | -8.615850e-47 |
| Msa0629650 | Msa1359630 | 0.812976 | 3.233311e-51 | -8.615850e-47 |
| Msa0629650 | Msa1363700 | 0.818566 | 1.833059e-52 | -8.615850e-47 |
| Msa0629650 | Msa1370620 | 0.802500 | 5.448685e-49 | -8.615850e-47 |
| Msa0629650 | Msa1371090 | 0.816479 | 5.412971e-52 | -8.615850e-47 |
| Msa0629650 | Msa1371940 | 0.806307 | 8.766457e-50 | -8.615850e-47 |
| Msa0629650 | Msa1375380 | 0.809847 | 1.545364e-50 | -8.615850e-47 |
| Msa0629650 | Msa1382790 | 0.807777 | 4.283367e-50 | -8.615850e-47 |
| Msa0629650 | Msa1388860 | 0.827919 | 1.198929e-54 | -8.615850e-47 |
| Msa0629650 | Msa1403340 | 0.811778 | 5.905400e-51 | -8.615850e-47 |
| Msa0629650 | Msa1403530 | -0.820700 | 5.971991e-53 | -8.615850e-47 |
| Msa0629650 | Msa1419960 | 0.804884 | 1.743497e-49 | -8.615850e-47 |
| Msa0629650 | Msa1435400 | 0.807736 | 4.368678e-50 | -8.615850e-47 |
| Msa0629650 | Msa1438700 | 0.802610 | 5.171383e-49 | -8.615850e-47 |
| Msa0629650 | Msa1450550 | -0.813170 | 2.931621e-51 | -8.615850e-47 |
| Msa0629650 | Msa1461550 | 0.809331 | 1.994716e-50 | -8.615850e-47 |
| Msa0129190 | Msa0629650 | -0.839053 | 1.994499e-57 | -8.615850e-47 |
| Msa0137570 | Msa0629650 | 0.813916 | 2.008345e-51 | -8.615850e-47 |
| Msa0148120 | Msa0629650 | 0.810977 | 8.815346e-51 | -8.615850e-47 |
| Msa0150990 | Msa0629650 | 0.804680 | 1.923465e-49 | -8.615850e-47 |
| Msa0177700 | Msa0629650 | -0.804804 | 1.811544e-49 | -8.615850e-47 |
| Msa0178510 | Msa0629650 | 0.802538 | 5.349627e-49 | -8.615850e-47 |
| Msa0178800 | Msa0629650 | 0.813180 | 2.916733e-51 | -8.615850e-47 |
| Msa0182570 | Msa0629650 | 0.822218 | 2.665024e-53 | -8.615850e-47 |
| Msa0186310 | Msa0629650 | 0.827014 | 1.976991e-54 | -8.615850e-47 |
| Msa0197660 | Msa0629650 | 0.820228 | 7.661779e-53 | -8.615850e-47 |
| Msa0217290 | Msa0629650 | 0.823689 | 1.210063e-53 | -8.615850e-47 |
| Msa0224320 | Msa0629650 | 0.806920 | 6.507725e-50 | -8.615850e-47 |
| Msa0377530 | Msa0629650 | 0.831437 | 1.670389e-55 | -8.615850e-47 |
| Msa0379410 | Msa0629650 | 0.802965 | 4.367544e-49 | -8.615850e-47 |
| Msa0380040 | Msa0629650 | 0.815991 | 6.961219e-52 | -8.615850e-47 |
| Msa0383800 | Msa0629650 | 0.820090 | 8.242641e-53 | -8.615850e-47 |
| Msa0385490 | Msa0629650 | 0.813787 | 2.144983e-51 | -8.615850e-47 |
| Msa0386040 | Msa0629650 | 0.859843 | 3.125077e-63 | -8.615850e-47 |
| Msa0386920 | Msa0629650 | 0.802022 | 6.831996e-49 | -8.615850e-47 |
| Msa0387370 | Msa0629650 | 0.810978 | 8.809996e-51 | -8.615850e-47 |
| Msa0388030 | Msa0629650 | -0.813600 | 2.357541e-51 | -8.615850e-47 |
| Msa0429290 | Msa0629650 | 0.829053 | 6.384184e-55 | -8.615850e-47 |
| Msa0429950 | Msa0629650 | 0.823614 | 1.259616e-53 | -8.615850e-47 |
| Msa0431670 | Msa0629650 | 0.819910 | 9.059756e-53 | -8.615850e-47 |
| Msa0434180 | Msa0629650 | 0.819090 | 1.393955e-52 | -8.615850e-47 |
| Msa0457510 | Msa0629650 | 0.818152 | 2.275241e-52 | -8.615850e-47 |
| Msa0460130 | Msa0629650 | 0.809343 | 1.983534e-50 | -8.615850e-47 |
| Msa0468320 | Msa0629650 | 0.808812 | 2.576818e-50 | -8.615850e-47 |
| Msa0473240 | Msa0629650 | 0.806361 | 8.539593e-50 | -8.615850e-47 |
| Msa0475580 | Msa0629650 | 0.822477 | 2.319859e-53 | -8.615850e-47 |
| Msa0239800 | Msa0629650 | 0.825400 | 4.784753e-54 | -8.615850e-47 |
| Msa0245310 | Msa0629650 | 0.832800 | 7.688821e-56 | -8.615850e-47 |
| Msa0257500 | Msa0629650 | 0.803321 | 3.686627e-49 | -8.615850e-47 |
| Msa0265380 | Msa0629650 | 0.841485 | 4.618922e-58 | -8.615850e-47 |
| Msa0268090 | Msa0629650 | 0.847395 | 1.188004e-59 | -8.615850e-47 |
| Msa0270170 | Msa0629650 | -0.828977 | 6.659074e-55 | -8.615850e-47 |
| Msa0277820 | Msa0629650 | 0.800083 | 1.702407e-48 | -8.615850e-47 |
| Msa0303360 | Msa0629650 | 0.853050 | 3.086273e-61 | -8.615850e-47 |
| Msa0317510 | Msa0629650 | 0.814415 | 1.559123e-51 | -8.615850e-47 |
| Msa0318980 | Msa0629650 | 0.802475 | 5.511903e-49 | -8.615850e-47 |
| Msa0333650 | Msa0629650 | 0.801599 | 8.345099e-49 | -8.615850e-47 |
| Msa0333720 | Msa0629650 | -0.807450 | 5.023975e-50 | -8.615850e-47 |
| Msa0340690 | Msa0629650 | 0.801746 | 7.786266e-49 | -8.615850e-47 |
| Msa0340710 | Msa0629650 | 0.810985 | 8.777636e-51 | -8.615850e-47 |
| Msa0344870 | Msa0629650 | 0.809146 | 2.185977e-50 | -8.615850e-47 |
| Msa0361140 | Msa0629650 | 0.803144 | 4.010732e-49 | -8.615850e-47 |
| Msa0489610 | Msa0629650 | 0.804201 | 2.420156e-49 | -8.615850e-47 |
| Msa0500720 | Msa0629650 | 0.811570 | 6.553104e-51 | -8.615850e-47 |
| Msa0517490 | Msa0629650 | 0.836255 | 1.041544e-56 | -8.615850e-47 |
| Msa0519220 | Msa0629650 | 0.829430 | 5.169256e-55 | -8.615850e-47 |
| Msa0530100 | Msa0629650 | 0.803769 | 2.976135e-49 | -8.615850e-47 |
| Msa0532540 | Msa0629650 | 0.981805 | 1.719906e-153 | -8.615850e-47 |
| Msa0532980 | Msa0629650 | 0.811843 | 5.714701e-51 | -8.615850e-47 |
| Msa0541040 | Msa0629650 | 0.824527 | 7.689758e-54 | -8.615850e-47 |
| Msa0542160 | Msa0629650 | 0.810147 | 1.331895e-50 | -8.615850e-47 |
| Msa0558690 | Msa0629650 | 0.803800 | 2.932808e-49 | -8.615850e-47 |
| Msa0567020 | Msa0629650 | 0.800267 | 1.561873e-48 | -8.615850e-47 |
| Msa0580530 | Msa0629650 | 0.810716 | 1.003649e-50 | -8.615850e-47 |
| Msa0584860 | Msa0629650 | 0.806540 | 7.828786e-50 | -8.615850e-47 |
| Msa0587030 | Msa0629650 | 0.804535 | 2.062071e-49 | -8.615850e-47 |
| Msa0589390 | Msa0629650 | 0.980543 | 1.840324e-150 | -8.615850e-47 |
| Msa0596800 | Msa0629650 | 0.828483 | 8.766145e-55 | -8.615850e-47 |
| Msa0597000 | Msa0629650 | 0.843380 | 1.452170e-58 | -8.615850e-47 |
| Msa0602370 | Msa0629650 | 0.810474 | 1.131980e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629650 | MtrunA17_Chr4g0005971 | 98.268 | 231 | 4 | 0 | 3 | 233 | 280 | 510 | 1.50e-167 | 471 |
| Msa0629650 | MtrunA17_Chr7g0241811 | 78.261 | 230 | 50 | 0 | 3 | 232 | 283 | 512 | 1.50e-133 | 385 |
| Msa0629650 | MtrunA17_Chr4g0005961 | 68.000 | 50 | 11 | 1 | 176 | 220 | 1 | 50 | 4.76e-18 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629650 | AT5G01220.1 | 72.926 | 229 | 62 | 0 | 3 | 231 | 279 | 507 | 4.98e-124 | 361 |
| Msa0629650 | AT5G01220.2 | 76.351 | 148 | 35 | 0 | 3 | 150 | 279 | 426 | 1.36e-76 | 238 |
Find 77 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATTACAATACTGCTATT+TGG | 0.201513 | 4_3:-10545986 | Msa0629650:CDS |
| GTCTCAGAGGCTCTGTCTTC+AGG | 0.203326 | 4_3:-10546233 | Msa0629650:CDS |
| GAAGATCAAGATGGCAAAAT+TGG | 0.239959 | 4_3:-10546161 | Msa0629650:CDS |
| ACAATACTGCTATTTGGTTT+TGG | 0.272252 | 4_3:-10545980 | Msa0629650:CDS |
| TTCATTTGCTGTATATTTAG+TGG | 0.300160 | 4_3:-10545768 | Msa0629650:three_prime_UTR |
| TGATCTTCGGTGATTATGTC+TGG | 0.304902 | 4_3:+10546176 | None:intergenic |
| TTTAATCTACATTATAATAA+TGG | 0.320158 | 4_3:+10545710 | None:intergenic |
| GAATCTTTCCAAAGTTTAGA+AGG | 0.348094 | 4_3:+10545863 | None:intergenic |
| ACAATAGCGATTCGTGCTTC+AGG | 0.349145 | 4_3:+10546961 | None:intergenic |
| ATTTCATGTGACTTGTACTT+AGG | 0.354414 | 4_3:+10547589 | None:intergenic |
| TAATGTTAAACGACACATTT+GGG | 0.354915 | 4_3:-10545661 | Msa0629650:three_prime_UTR |
| TCCTAGGTTTGTCATGCTCT+TGG | 0.358102 | 4_3:+10545592 | None:intergenic |
| GGGATGCATAGTTGTAAGAT+AGG | 0.361758 | 4_3:-10545493 | Msa0629650:three_prime_UTR |
| TCTCAGAGGCTCTGTCTTCA+GGG | 0.381353 | 4_3:-10546232 | Msa0629650:CDS |
| TCAATTACCTATACAACTTC+GGG | 0.383739 | 4_3:+10545894 | None:intergenic |
| ACATGCAACCTTCTAAACTT+TGG | 0.388340 | 4_3:-10545871 | Msa0629650:three_prime_UTR |
| GTATTAAACAAATGAGTGAT+TGG | 0.397567 | 4_3:-10545804 | Msa0629650:three_prime_UTR |
| ATTATTCATGTTGGGCGTCT+TGG | 0.399379 | 4_3:-10547447 | Msa0629650:CDS |
| TGAATAATCAAGGGCTTCTC+TGG | 0.401493 | 4_3:+10547462 | None:intergenic |
| AGCCCTTGATTATTCATGTT+GGG | 0.416627 | 4_3:-10547455 | Msa0629650:CDS |
| GTCTTCAGGGATTCCTGTTG+TGG | 0.423339 | 4_3:-10546219 | Msa0629650:CDS |
| GATTCCTTGCTTGATTACTT+AGG | 0.423601 | 4_3:-10545845 | Msa0629650:three_prime_UTR |
| GTAATGTTAAACGACACATT+TGG | 0.426664 | 4_3:-10545662 | Msa0629650:three_prime_UTR |
| CCGGCACGTGCGCCCACAAC+AGG | 0.441624 | 4_3:+10546206 | None:intergenic |
| GAAGCACGAATCGCTATTGT+TGG | 0.443160 | 4_3:-10546958 | Msa0629650:CDS |
| AAAAGCCGCACGTATAGAAA+TGG | 0.444036 | 4_3:-10546051 | Msa0629650:CDS |
| AAATATGTTTCGTTAGCCAT+TGG | 0.444300 | 4_3:+10545925 | None:intergenic |
| GAGCTAGAGAAATTGTTAGA+AGG | 0.445162 | 4_3:-10546365 | Msa0629650:CDS |
| TTCAATTACCTATACAACTT+CGG | 0.448232 | 4_3:+10545893 | None:intergenic |
| CCTGTTGTGGGCGCACGTGC+CGG | 0.452177 | 4_3:-10546206 | Msa0629650:CDS |
| TCTTCAGGGATTCCTGTTGT+GGG | 0.460643 | 4_3:-10546218 | Msa0629650:CDS |
| CCCGTCTCCCGAAGTTGTAT+AGG | 0.463165 | 4_3:-10545901 | Msa0629650:exon |
| GATCTTCGGTGATTATGTCT+GGG | 0.471115 | 4_3:+10546177 | None:intergenic |
| ATGACAAACCTAGGAGGATC+TGG | 0.484121 | 4_3:-10545584 | Msa0629650:three_prime_UTR |
| CTAAATATACAGCAAATGAA+TGG | 0.485798 | 4_3:+10545771 | None:intergenic |
| AATGGAGAAGTATGACTGGA+GGG | 0.497567 | 4_3:-10546033 | Msa0629650:CDS |
| AACATTCCTGTGAATACTAC+AGG | 0.502930 | 4_3:+10546338 | None:intergenic |
| TACTATTACCAGATCCTCCT+AGG | 0.502963 | 4_3:+10545576 | None:intergenic |
| ACGCCCAACATGAATAATCA+AGG | 0.504182 | 4_3:+10547452 | None:intergenic |
| AAGCAATCGTCGAGATCACC+TGG | 0.504324 | 4_3:+10546125 | None:intergenic |
| TATTCACAGGAATGTTAAGC+GGG | 0.510418 | 4_3:-10546331 | Msa0629650:CDS |
| CCTATACAACTTCGGGAGAC+GGG | 0.510470 | 4_3:+10545901 | None:intergenic |
| TTCAGAGTATGTTACCTGTA+GGG | 0.520308 | 4_3:+10546928 | None:intergenic |
| ACCTATACAACTTCGGGAGA+CGG | 0.521685 | 4_3:+10545900 | None:intergenic |
| GGATGCATAGTTGTAAGATA+GGG | 0.522616 | 4_3:-10545492 | Msa0629650:three_prime_UTR |
| CGAATCGCTATTGTTGGAGA+TGG | 0.527504 | 4_3:-10546952 | Msa0629650:CDS |
| AAGCCCTTGATTATTCATGT+TGG | 0.533594 | 4_3:-10547456 | Msa0629650:CDS |
| ATTGGATATCTCTACACTCC+AGG | 0.535829 | 4_3:-10546143 | Msa0629650:CDS |
| AACTATTGTTACCGTTCCAA+TGG | 0.544153 | 4_3:-10545941 | Msa0629650:CDS |
| GTTGTGGGCGCACGTGCCGG+TGG | 0.550499 | 4_3:-10546203 | Msa0629650:CDS |
| GACAACTTGACCAAGTGTCT+CGG | 0.550994 | 4_3:+10546253 | None:intergenic |
| TCAAATATTGTGATAGCTTG+TGG | 0.552472 | 4_3:-10545744 | Msa0629650:three_prime_UTR |
| ACATTTGGGCAACTAGTAAG+TGG | 0.555660 | 4_3:-10545647 | Msa0629650:three_prime_UTR |
| GGCATGCCTGTAGTATTCAC+AGG | 0.556036 | 4_3:-10546344 | Msa0629650:CDS |
| CACACGACTTTGCAGTGTCA+TGG | 0.562589 | 4_3:-10546992 | Msa0629650:intron |
| CCGTCAGAGTCCGAGACACT+TGG | 0.566913 | 4_3:-10546263 | Msa0629650:CDS |
| TAGAAATGGAGAAGTATGAC+TGG | 0.568964 | 4_3:-10546037 | Msa0629650:CDS |
| CTTCTCCATTTCTATACGTG+CGG | 0.572187 | 4_3:+10546046 | None:intergenic |
| CGTAGAGTTGAGAGAAACGA+TGG | 0.586580 | 4_3:-10546075 | Msa0629650:CDS |
| TTGTTGGAGATGGACCCTAC+AGG | 0.587255 | 4_3:-10546942 | Msa0629650:intron |
| GACTTTGCAGTGTCATGGAT+AGG | 0.595761 | 4_3:-10546987 | Msa0629650:intron |
| TCCAAGAGCATGACAAACCT+AGG | 0.602558 | 4_3:-10545593 | Msa0629650:three_prime_UTR |
| AAATGGAGAAGTATGACTGG+AGG | 0.604480 | 4_3:-10546034 | Msa0629650:CDS |
| GATTATGTCTGGGATTCCAC+CGG | 0.604568 | 4_3:+10546187 | None:intergenic |
| CGCCCAACATGAATAATCAA+GGG | 0.606295 | 4_3:+10547453 | None:intergenic |
| AAAGCCTAAGTAATCAAGCA+AGG | 0.628104 | 4_3:+10545841 | None:intergenic |
| TGTTTCGTTAGCCATTGGAA+CGG | 0.629285 | 4_3:+10545930 | None:intergenic |
| AACTCTACGTCATGCAACAG+AGG | 0.641063 | 4_3:+10546089 | None:intergenic |
| TTATCTCAAGCATATGCTAG+TGG | 0.642840 | 4_3:-10546302 | Msa0629650:CDS |
| CCAAGTGTCTCGGACTCTGA+CGG | 0.649173 | 4_3:+10546263 | None:intergenic |
| ATAATCACCGAAGATCAAGA+TGG | 0.654411 | 4_3:-10546170 | Msa0629650:CDS |
| GTATTCACAGGAATGTTAAG+CGG | 0.659850 | 4_3:-10546332 | Msa0629650:CDS |
| ACTTGGTCAAGTTGTCTCAG+AGG | 0.674209 | 4_3:-10546246 | Msa0629650:CDS |
| ATGAAATGCGATTAAGACTG+AGG | 0.676913 | 4_3:-10547573 | Msa0629650:intron |
| AAGAGCATGACAAACCTAGG+AGG | 0.678295 | 4_3:-10545590 | Msa0629650:three_prime_UTR |
| GTAGAGTTGAGAGAAACGAT+GGG | 0.679056 | 4_3:-10546074 | Msa0629650:CDS |
| ATTCACAGGAATGTTAAGCG+GGG | 0.713944 | 4_3:-10546330 | Msa0629650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACATTTTTTTTAACATATAA+TGG | - | chr4_3:10545885-10545904 | Msa0629650:exon | 10.0% |
| !!! | TTTTTTCTAATTTCTTTTTT+TGG | - | chr4_3:10546168-10546187 | Msa0629650:CDS | 10.0% |
| !!! | TTTTTCTAATTTCTTTTTTT+GGG | - | chr4_3:10546169-10546188 | Msa0629650:CDS | 10.0% |
| !!! | TATAAAATATTTCTTCTTTT+AGG | - | chr4_3:10546769-10546788 | Msa0629650:intron | 10.0% |
| !! | TTTAATCTACATTATAATAA+TGG | + | chr4_3:10549242-10549261 | None:intergenic | 10.0% |
| !! | CTGTAAAAAAATATAAGAAA+TGG | + | chr4_3:10545795-10545814 | None:intergenic | 15.0% |
| !! | AAAAATGATAAAATCTAGAA+GGG | + | chr4_3:10546833-10546852 | None:intergenic | 15.0% |
| !!! | CATTTTATTTAAATTCAACT+AGG | - | chr4_3:10548355-10548374 | Msa0629650:intron | 15.0% |
| !!! | AATGTATATACAACTTTTCA+TGG | - | chr4_3:10545551-10545570 | Msa0629650:three_prime_UTR | 20.0% |
| !!! | TGTTTTATGATTAAACAAGT+AGG | - | chr4_3:10545675-10545694 | Msa0629650:three_prime_UTR | 20.0% |
| !! | ATAAAAAGTTGCAATAAAAC+TGG | + | chr4_3:10545701-10545720 | None:intergenic | 20.0% |
| !!! | TTTTATCGTATAGATATAGA+TGG | - | chr4_3:10546116-10546135 | Msa0629650:CDS | 20.0% |
| !! | CAAATATAGAAATAACTCAT+TGG | - | chr4_3:10546690-10546709 | Msa0629650:intron | 20.0% |
| !! | GAAAAATGATAAAATCTAGA+AGG | + | chr4_3:10546834-10546853 | None:intergenic | 20.0% |
| !! | NNNNNNNAGTTGAAGAGATA+AGG | + | chr4_3:10546998-10547017 | None:intergenic | 20.0% |
| !!! | AGAGTTTAGATTTTCTTAAA+AGG | - | chr4_3:10547533-10547552 | Msa0629650:intron | 20.0% |
| !!! | TAGTTCTTTCTTTAATTTTC+TGG | + | chr4_3:10548117-10548136 | None:intergenic | 20.0% |
| !!! | AATATTTGTTGTTAACTTAC+AGG | - | chr4_3:10548558-10548577 | Msa0629650:intron | 20.0% |
| !!! | ATATTTGTTGTTAACTTACA+GGG | - | chr4_3:10548559-10548578 | Msa0629650:intron | 20.0% |
| !! | AAAATTACAATACTGCTATT+TGG | - | chr4_3:10548963-10548982 | Msa0629650:intron | 20.0% |
| ! | ATTTAGTTAATGTGTTAGTG+TGG | + | chr4_3:10545525-10545544 | None:intergenic | 25.0% |
| ! | TTTAACATCATCCTTTCATT+TGG | - | chr4_3:10545602-10545621 | Msa0629650:three_prime_UTR | 25.0% |
| ! | TAATCATAAAACAAAAGTCC+AGG | + | chr4_3:10545668-10545687 | None:intergenic | 25.0% |
| !! | AAATATAAGAAATGGACTTC+AGG | + | chr4_3:10545787-10545806 | None:intergenic | 25.0% |
| ! | ATATTCGAATGTGAGATAAA+AGG | + | chr4_3:10545847-10545866 | None:intergenic | 25.0% |
| ! | TAACATATAATGGTCAATGA+AGG | - | chr4_3:10545895-10545914 | Msa0629650:exon | 25.0% |
| ! | AACATATAATGGTCAATGAA+GGG | - | chr4_3:10545896-10545915 | Msa0629650:exon | 25.0% |
| !!! | CGCTTCATTTTTGTATAATT+TGG | + | chr4_3:10546057-10546076 | None:intergenic | 25.0% |
| ! | TAATATTCTTGTTAATGCCT+TGG | + | chr4_3:10546144-10546163 | None:intergenic | 25.0% |
| ! | AAGCAAAAGAAAAGATTGAT+TGG | - | chr4_3:10546261-10546280 | Msa0629650:CDS | 25.0% |
| ! | AGCAAAAGAAAAGATTGATT+GGG | - | chr4_3:10546262-10546281 | Msa0629650:CDS | 25.0% |
| ! | ATTTCAACATCATTCTAGAT+TGG | - | chr4_3:10546627-10546646 | Msa0629650:intron | 25.0% |
| ! | TTTCAACATCATTCTAGATT+GGG | - | chr4_3:10546628-10546647 | Msa0629650:intron | 25.0% |
| ! | GACAAAATTGATATGTTTGA+TGG | + | chr4_3:10546945-10546964 | None:intergenic | 25.0% |
| ! | CTAGGAAAATAAACTGAAAA+CGG | - | chr4_3:10547153-10547172 | Msa0629650:intron | 25.0% |
| !! | ATGCACAAAGTTTGAAATAA+TGG | - | chr4_3:10547420-10547439 | Msa0629650:CDS | 25.0% |
| ! | TTAGATATCATCTTGTAAAC+TGG | - | chr4_3:10547556-10547575 | Msa0629650:intron | 25.0% |
| ! | TAGATATCATCTTGTAAACT+GGG | - | chr4_3:10547557-10547576 | Msa0629650:intron | 25.0% |
| ! | GAAAACATATCTTGTAAAAG+TGG | + | chr4_3:10547681-10547700 | None:intergenic | 25.0% |
| !! | ACATAAAGTAAAGTGCATTT+TGG | + | chr4_3:10547883-10547902 | None:intergenic | 25.0% |
| !!! | CTCTGAAATTTCTTTGATTT+TGG | - | chr4_3:10548037-10548056 | Msa0629650:intron | 25.0% |
| ! | TTTCACTAATGACTTTCTAA+TGG | - | chr4_3:10548088-10548107 | Msa0629650:intron | 25.0% |
| ! | TTCACTAATGACTTTCTAAT+GGG | - | chr4_3:10548089-10548108 | Msa0629650:intron | 25.0% |
| ! | TATTTCACAACACTGTTAAA+TGG | - | chr4_3:10548409-10548428 | Msa0629650:intron | 25.0% |
| !!! | TTTTAAGAGACCAGAAATAA+TGG | - | chr4_3:10548477-10548496 | Msa0629650:intron | 25.0% |
| ! | TTCTAGCATTGTAAAATCTA+TGG | - | chr4_3:10548524-10548543 | Msa0629650:intron | 25.0% |
| ! | TTCAATTACCTATACAACTT+CGG | + | chr4_3:10549059-10549078 | None:intergenic | 25.0% |
| ! | GTATTAAACAAATGAGTGAT+TGG | - | chr4_3:10549145-10549164 | Msa0629650:intron | 25.0% |
| ! | CTAAATATACAGCAAATGAA+TGG | + | chr4_3:10549181-10549200 | None:intergenic | 25.0% |
| !!! | TTCATTTGCTGTATATTTAG+TGG | - | chr4_3:10549181-10549200 | Msa0629650:intron | 25.0% |
| ! | TAATGTTAAACGACACATTT+GGG | - | chr4_3:10549288-10549307 | Msa0629650:intron | 25.0% |
| AATAAACACTAGTAGACACT+AGG | + | chr4_3:10545757-10545776 | None:intergenic | 30.0% | |
| ATGCTATAGTATAGAGTTCA+AGG | + | chr4_3:10546028-10546047 | None:intergenic | 30.0% | |
| TATAGATATAGATGGAACCA+AGG | - | chr4_3:10546124-10546143 | Msa0629650:CDS | 30.0% | |
| !!! | AGAGTGCACAATTTTTTTGA+GGG | + | chr4_3:10546218-10546237 | None:intergenic | 30.0% |
| !!! | TAGAGTGCACAATTTTTTTG+AGG | + | chr4_3:10546219-10546238 | None:intergenic | 30.0% |
| GCTTAAATGATGCAATTAGT+TGG | + | chr4_3:10546321-10546340 | None:intergenic | 30.0% | |
| ! | TAGATGTTGATAAGATTCGT+TGG | + | chr4_3:10546512-10546531 | None:intergenic | 30.0% |
| !! | TTCATTAACTTGTGCCTTAA+GGG | + | chr4_3:10546669-10546688 | None:intergenic | 30.0% |
| !! | TTTCATTAACTTGTGCCTTA+AGG | + | chr4_3:10546670-10546689 | None:intergenic | 30.0% |
| !! | TGATATGTTTGATGGTTTTG+TGG | + | chr4_3:10546937-10546956 | None:intergenic | 30.0% |
| !! | CGTTTTCAGTTTATTTTCCT+AGG | + | chr4_3:10547155-10547174 | None:intergenic | 30.0% |
| ! | AATAAACTGAAAACGGCTTT+TGG | - | chr4_3:10547160-10547179 | Msa0629650:intron | 30.0% |
| ! | ATTTCATGTGACTTGTACTT+AGG | + | chr4_3:10547363-10547382 | None:intergenic | 30.0% |
| TTGTGCATGAAAATGACAAA+AGG | + | chr4_3:10547408-10547427 | None:intergenic | 30.0% | |
| AGCTATTAATTTACGATCGT+AGG | + | chr4_3:10547806-10547825 | None:intergenic | 30.0% | |
| AACACACTTTCCATTATTTC+TGG | + | chr4_3:10548490-10548509 | None:intergenic | 30.0% | |
| ! | AATTTTGCCATCTTGATCTT+CGG | + | chr4_3:10548789-10548808 | None:intergenic | 30.0% |
| !! | ACAATACTGCTATTTGGTTT+TGG | - | chr4_3:10548969-10548988 | Msa0629650:intron | 30.0% |
| AAATATGTTTCGTTAGCCAT+TGG | + | chr4_3:10549027-10549046 | None:intergenic | 30.0% | |
| TCAATTACCTATACAACTTC+GGG | + | chr4_3:10549058-10549077 | None:intergenic | 30.0% | |
| GAATCTTTCCAAAGTTTAGA+AGG | + | chr4_3:10549089-10549108 | None:intergenic | 30.0% | |
| TCAAATATTGTGATAGCTTG+TGG | - | chr4_3:10549205-10549224 | Msa0629650:intron | 30.0% | |
| GTAATGTTAAACGACACATT+TGG | - | chr4_3:10549287-10549306 | Msa0629650:intron | 30.0% | |
| TTGTGTTCCAAAAACTTGAA+TGG | + | chr4_3:10549333-10549352 | None:intergenic | 30.0% | |
| ! | TGAAGTGTAGTTTTCATCTT+TGG | - | chr4_3:10549435-10549454 | Msa0629650:intron | 30.0% |
| ! | GAAGTGTAGTTTTCATCTTT+GGG | - | chr4_3:10549436-10549455 | Msa0629650:intron | 30.0% |
| GTTAATGTGTTAGTGTGGTA+GGG | + | chr4_3:10545520-10545539 | None:intergenic | 35.0% | |
| AGTTAATGTGTTAGTGTGGT+AGG | + | chr4_3:10545521-10545540 | None:intergenic | 35.0% | |
| TGTCGTAACTCTTCTTATTC+CGG | - | chr4_3:10545578-10545597 | Msa0629650:three_prime_UTR | 35.0% | |
| TGAAAGGATGATGTTAAAGC+CGG | + | chr4_3:10545600-10545619 | None:intergenic | 35.0% | |
| ACATCATCCTTTCATTTGGA+AGG | - | chr4_3:10545606-10545625 | Msa0629650:three_prime_UTR | 35.0% | |
| ATATTCACCAAACATTTGCC+TGG | - | chr4_3:10545647-10545666 | Msa0629650:three_prime_UTR | 35.0% | |
| !!! | GAGTGCACAATTTTTTTGAG+GGG | + | chr4_3:10546217-10546236 | None:intergenic | 35.0% |
| AATGATGCAATTAGTTGGCT+TGG | + | chr4_3:10546316-10546335 | None:intergenic | 35.0% | |
| ! | AAATCTTTAAGGAGCAAGGA+CGG | + | chr4_3:10546447-10546466 | None:intergenic | 35.0% |
| ! | TTGGAAATCTTTAAGGAGCA+AGG | + | chr4_3:10546451-10546470 | None:intergenic | 35.0% |
| ! | ATGTGGCTTGGAAATCTTTA+AGG | + | chr4_3:10546458-10546477 | None:intergenic | 35.0% |
| !! | AATGTTAACTTGTGCCCTTA+AGG | - | chr4_3:10546652-10546671 | Msa0629650:intron | 35.0% |
| TTTCTTAACATGTGCCCTAA+GGG | - | chr4_3:10546792-10546811 | Msa0629650:intron | 35.0% | |
| !! | TATGTACGTTTGCTATCACT+CGG | + | chr4_3:10546872-10546891 | None:intergenic | 35.0% |
| TTCTCAAACAGTCTAACTAG+TGG | - | chr4_3:10547209-10547228 | Msa0629650:intron | 35.0% | |
| ATGAAATGCGATTAAGACTG+AGG | - | chr4_3:10547376-10547395 | Msa0629650:intron | 35.0% | |
| ATACTTGTGTTATGCAGCAA+TGG | - | chr4_3:10547460-10547479 | Msa0629650:CDS | 35.0% | |
| AAGCCCTTGATTATTCATGT+TGG | - | chr4_3:10547493-10547512 | Msa0629650:intron | 35.0% | |
| AGCCCTTGATTATTCATGTT+GGG | - | chr4_3:10547494-10547513 | Msa0629650:intron | 35.0% | |
| ACAGAAATAGATCCCTTCAA+CGG | - | chr4_3:10547722-10547741 | Msa0629650:intron | 35.0% | |
| ! | GCATTTTGGACTCAAATACT+CGG | + | chr4_3:10547869-10547888 | None:intergenic | 35.0% |
| TGTGTATCAGATGTTAATGC+AGG | + | chr4_3:10547941-10547960 | None:intergenic | 35.0% | |
| TTCAGAGTATGTTACCTGTA+GGG | + | chr4_3:10548024-10548043 | None:intergenic | 35.0% | |
| TTTCAGAGTATGTTACCTGT+AGG | + | chr4_3:10548025-10548044 | None:intergenic | 35.0% | |
| ! | TTTTCCACGTTTGACAACAA+TGG | + | chr4_3:10548235-10548254 | None:intergenic | 35.0% |
| TTGTCAAACGTGGAAAATAG+CGG | - | chr4_3:10548238-10548257 | Msa0629650:intron | 35.0% | |
| !! | CACAAAGTGTTGTCAAATAG+TGG | + | chr4_3:10548309-10548328 | None:intergenic | 35.0% |
| TTGTGAAATAGCATCTACAG+TGG | + | chr4_3:10548399-10548418 | None:intergenic | 35.0% | |
| ! | GGAAAGTGTGTTACAAAAGT+TGG | - | chr4_3:10548498-10548517 | Msa0629650:intron | 35.0% |
| !! | TTTGTTGTTAACTTACAGGG+AGG | - | chr4_3:10548562-10548581 | Msa0629650:intron | 35.0% |
| GAGCTAGAGAAATTGTTAGA+AGG | - | chr4_3:10548584-10548603 | Msa0629650:intron | 35.0% | |
| AACATTCCTGTGAATACTAC+AGG | + | chr4_3:10548614-10548633 | None:intergenic | 35.0% | |
| GTATTCACAGGAATGTTAAG+CGG | - | chr4_3:10548617-10548636 | Msa0629650:intron | 35.0% | |
| TATTCACAGGAATGTTAAGC+GGG | - | chr4_3:10548618-10548637 | Msa0629650:intron | 35.0% | |
| TTATCTCAAGCATATGCTAG+TGG | - | chr4_3:10548647-10548666 | Msa0629650:intron | 35.0% | |
| ATAATCACCGAAGATCAAGA+TGG | - | chr4_3:10548779-10548798 | Msa0629650:intron | 35.0% | |
| GAAGATCAAGATGGCAAAAT+TGG | - | chr4_3:10548788-10548807 | Msa0629650:intron | 35.0% | |
| ! | TAGAAATGGAGAAGTATGAC+TGG | - | chr4_3:10548912-10548931 | Msa0629650:intron | 35.0% |
| AACTATTGTTACCGTTCCAA+TGG | - | chr4_3:10549008-10549027 | Msa0629650:intron | 35.0% | |
| ACATGCAACCTTCTAAACTT+TGG | - | chr4_3:10549078-10549097 | Msa0629650:intron | 35.0% | |
| GATTCCTTGCTTGATTACTT+AGG | - | chr4_3:10549104-10549123 | Msa0629650:intron | 35.0% | |
| AAAGCCTAAGTAATCAAGCA+AGG | + | chr4_3:10549111-10549130 | None:intergenic | 35.0% | |
| !! | GGAGAATCCATTCAAGTTTT+TGG | - | chr4_3:10549323-10549342 | Msa0629650:intron | 35.0% |
| GGATGCATAGTTGTAAGATA+GGG | - | chr4_3:10549457-10549476 | Msa0629650:intron | 35.0% | |
| AGCATGTCCTTCCAAATGAA+AGG | + | chr4_3:10545616-10545635 | None:intergenic | 40.0% | |
| CAAAAGTCCAGGCAAATGTT+TGG | + | chr4_3:10545657-10545676 | None:intergenic | 40.0% | |
| ATGGTATAGGGATGTATCGA+AGG | + | chr4_3:10546423-10546442 | None:intergenic | 40.0% | |
| !! | AAGAGCGTTGAAGTACAATG+TGG | + | chr4_3:10546475-10546494 | None:intergenic | 40.0% |
| ! | CCTCATCTTCAAGCTCTAAT+CGG | + | chr4_3:10546536-10546555 | None:intergenic | 40.0% |
| TGAAATTCCTCCATGTCTGA+CGG | + | chr4_3:10546613-10546632 | None:intergenic | 40.0% | |
| GTTTCTTAACATGTGCCCTA+AGG | - | chr4_3:10546791-10546810 | Msa0629650:intron | 40.0% | |
| !! | AGTGTTAACTTGTGCCCTTA+GGG | + | chr4_3:10546809-10546828 | None:intergenic | 40.0% |
| !! | TAGTGTTAACTTGTGCCCTT+AGG | + | chr4_3:10546810-10546829 | None:intergenic | 40.0% |
| !! | ATGTACGTTTGCTATCACTC+GGG | + | chr4_3:10546871-10546890 | None:intergenic | 40.0% |
| TAGGCTCATCAAGATAGTCT+AGG | + | chr4_3:10547136-10547155 | None:intergenic | 40.0% | |
| TAGACTATCTTGATGAGCCT+AGG | - | chr4_3:10547135-10547154 | Msa0629650:intron | 40.0% | |
| CTTGTTAGCTGGAAATCAAC+AGG | + | chr4_3:10547298-10547317 | None:intergenic | 40.0% | |
| !! | AAGATCCGTCTTTGGAACAA+GGG | - | chr4_3:10547315-10547334 | Msa0629650:intron | 40.0% |
| TGAATAATCAAGGGCTTCTC+TGG | + | chr4_3:10547490-10547509 | None:intergenic | 40.0% | |
| CGCCCAACATGAATAATCAA+GGG | + | chr4_3:10547499-10547518 | None:intergenic | 40.0% | |
| ACGCCCAACATGAATAATCA+AGG | + | chr4_3:10547500-10547519 | None:intergenic | 40.0% | |
| ATTATTCATGTTGGGCGTCT+TGG | - | chr4_3:10547502-10547521 | Msa0629650:intron | 40.0% | |
| CAGAAATAGATCCCTTCAAC+GGG | - | chr4_3:10547723-10547742 | Msa0629650:intron | 40.0% | |
| TTGATTGAGATCCCGTTGAA+GGG | + | chr4_3:10547737-10547756 | None:intergenic | 40.0% | |
| ATTGATTGAGATCCCGTTGA+AGG | + | chr4_3:10547738-10547757 | None:intergenic | 40.0% | |
| TTCAACGGGATCTCAATCAA+TGG | - | chr4_3:10547737-10547756 | Msa0629650:intron | 40.0% | |
| GGGAATTACACAGTTACACA+CGG | + | chr4_3:10547840-10547859 | None:intergenic | 40.0% | |
| ATTCACAGGAATGTTAAGCG+GGG | - | chr4_3:10548619-10548638 | Msa0629650:intron | 40.0% | |
| GATCTTCGGTGATTATGTCT+GGG | + | chr4_3:10548775-10548794 | None:intergenic | 40.0% | |
| TGATCTTCGGTGATTATGTC+TGG | + | chr4_3:10548776-10548795 | None:intergenic | 40.0% | |
| ATTGGATATCTCTACACTCC+AGG | - | chr4_3:10548806-10548825 | Msa0629650:intron | 40.0% | |
| GTAGAGTTGAGAGAAACGAT+GGG | - | chr4_3:10548875-10548894 | Msa0629650:intron | 40.0% | |
| AAAAGCCGCACGTATAGAAA+TGG | - | chr4_3:10548898-10548917 | Msa0629650:intron | 40.0% | |
| CTTCTCCATTTCTATACGTG+CGG | + | chr4_3:10548906-10548925 | None:intergenic | 40.0% | |
| ! | AAATGGAGAAGTATGACTGG+AGG | - | chr4_3:10548915-10548934 | Msa0629650:intron | 40.0% |
| ! | AATGGAGAAGTATGACTGGA+GGG | - | chr4_3:10548916-10548935 | Msa0629650:intron | 40.0% |
| !!! | TTGGTTTTGGCGCAAGAAAA+AGG | - | chr4_3:10548982-10549001 | Msa0629650:intron | 40.0% |
| TGTTTCGTTAGCCATTGGAA+CGG | + | chr4_3:10549022-10549041 | None:intergenic | 40.0% | |
| ACATTTGGGCAACTAGTAAG+TGG | - | chr4_3:10549302-10549321 | Msa0629650:intron | 40.0% | |
| TACTATTACCAGATCCTCCT+AGG | + | chr4_3:10549376-10549395 | None:intergenic | 40.0% | |
| GGGATGCATAGTTGTAAGAT+AGG | - | chr4_3:10549456-10549475 | Msa0629650:intron | 40.0% | |
| GGTAGGGTAGTAGGTTTGTA+GGG | + | chr4_3:10545504-10545523 | None:intergenic | 45.0% | |
| TGGTAGGGTAGTAGGTTTGT+AGG | + | chr4_3:10545505-10545524 | None:intergenic | 45.0% | |
| TGTTAGTGTGGTAGGGTAGT+AGG | + | chr4_3:10545513-10545532 | None:intergenic | 45.0% | |
| ATAGAGCGATACTACAACCC+CGG | + | chr4_3:10546360-10546379 | None:intergenic | 45.0% | |
| ATGTATCGAAGGAACGACAG+AGG | + | chr4_3:10546412-10546431 | None:intergenic | 45.0% | |
| AGCAAGGACGGTATGGTATA+GGG | + | chr4_3:10546435-10546454 | None:intergenic | 45.0% | |
| TTTAAGGAGCAAGGACGGTA+TGG | + | chr4_3:10546442-10546461 | None:intergenic | 45.0% | |
| CGTTGAAGTACAATGTGGCT+TGG | + | chr4_3:10546470-10546489 | None:intergenic | 45.0% | |
| AAGATTCGTTGGCAATGACC+TGG | + | chr4_3:10546501-10546520 | None:intergenic | 45.0% | |
| CCGATTAGAGCTTGAAGATG+AGG | - | chr4_3:10546533-10546552 | Msa0629650:intron | 45.0% | |
| TGCATGATACTTGTCTCGAG+TGG | + | chr4_3:10546581-10546600 | None:intergenic | 45.0% | |
| AAGAGATAAGGAACGAGCGA+GGG | + | chr4_3:10546986-10547005 | None:intergenic | 45.0% | |
| CAAAGACGGATCTTGTTAGC+TGG | + | chr4_3:10547309-10547328 | None:intergenic | 45.0% | |
| CAGCTAACAAGATCCGTCTT+TGG | - | chr4_3:10547307-10547326 | Msa0629650:intron | 45.0% | |
| !! | CAAGATCCGTCTTTGGAACA+AGG | - | chr4_3:10547314-10547333 | Msa0629650:intron | 45.0% |
| CAACACCCTTGTTCCAAAGA+CGG | + | chr4_3:10547323-10547342 | None:intergenic | 45.0% | |
| ACTCAAATACTCGGCAGTAG+GGG | + | chr4_3:10547860-10547879 | None:intergenic | 45.0% | |
| GACTCAAATACTCGGCAGTA+GGG | + | chr4_3:10547861-10547880 | None:intergenic | 45.0% | |
| GACTTTGCAGTGTCATGGAT+AGG | - | chr4_3:10547962-10547981 | Msa0629650:intron | 45.0% | |
| ACAATAGCGATTCGTGCTTC+AGG | + | chr4_3:10547991-10548010 | None:intergenic | 45.0% | |
| GAAGCACGAATCGCTATTGT+TGG | - | chr4_3:10547991-10548010 | Msa0629650:intron | 45.0% | |
| CGAATCGCTATTGTTGGAGA+TGG | - | chr4_3:10547997-10548016 | Msa0629650:intron | 45.0% | |
| GATGCCATTGTTGTCAAACG+TGG | - | chr4_3:10548228-10548247 | Msa0629650:intron | 45.0% | |
| GACAACTTGACCAAGTGTCT+CGG | + | chr4_3:10548699-10548718 | None:intergenic | 45.0% | |
| ! | ACTTGGTCAAGTTGTCTCAG+AGG | - | chr4_3:10548703-10548722 | Msa0629650:intron | 45.0% |
| TCTTCAGGGATTCCTGTTGT+GGG | - | chr4_3:10548731-10548750 | Msa0629650:intron | 45.0% | |
| ! | GATTATGTCTGGGATTCCAC+CGG | + | chr4_3:10548765-10548784 | None:intergenic | 45.0% |
| AACTCTACGTCATGCAACAG+AGG | + | chr4_3:10548863-10548882 | None:intergenic | 45.0% | |
| CGTAGAGTTGAGAGAAACGA+TGG | - | chr4_3:10548874-10548893 | Msa0629650:intron | 45.0% | |
| ACCTATACAACTTCGGGAGA+CGG | + | chr4_3:10549052-10549071 | None:intergenic | 45.0% | |
| ! | TCCAAGAGCATGACAAACCT+AGG | - | chr4_3:10549356-10549375 | Msa0629650:intron | 45.0% |
| TCCTAGGTTTGTCATGCTCT+TGG | + | chr4_3:10549360-10549379 | None:intergenic | 45.0% | |
| ! | AAGAGCATGACAAACCTAGG+AGG | - | chr4_3:10549359-10549378 | Msa0629650:intron | 45.0% |
| ATGACAAACCTAGGAGGATC+TGG | - | chr4_3:10549365-10549384 | Msa0629650:intron | 45.0% | |
| GAGCAAGGACGGTATGGTAT+AGG | + | chr4_3:10546436-10546455 | None:intergenic | 50.0% | |
| TACTTCAACGCTCTTGCTCC+AGG | - | chr4_3:10546480-10546499 | Msa0629650:intron | 50.0% | |
| ACCAGATGTACCGTCAGACA+TGG | - | chr4_3:10546600-10546619 | Msa0629650:intron | 50.0% | |
| TCCATGTCTGACGGTACATC+TGG | + | chr4_3:10546604-10546623 | None:intergenic | 50.0% | |
| AGATGTACCGTCAGACATGG+AGG | - | chr4_3:10546603-10546622 | Msa0629650:intron | 50.0% | |
| GAAGAGATAAGGAACGAGCG+AGG | + | chr4_3:10546987-10547006 | None:intergenic | 50.0% | |
| GGACTCAAATACTCGGCAGT+AGG | + | chr4_3:10547862-10547881 | None:intergenic | 50.0% | |
| CACACGACTTTGCAGTGTCA+TGG | - | chr4_3:10547957-10547976 | Msa0629650:intron | 50.0% | |
| TTGTTGGAGATGGACCCTAC+AGG | - | chr4_3:10548007-10548026 | Msa0629650:intron | 50.0% | |
| GGCATGCCTGTAGTATTCAC+AGG | - | chr4_3:10548605-10548624 | Msa0629650:intron | 50.0% | |
| TCTCAGAGGCTCTGTCTTCA+GGG | - | chr4_3:10548717-10548736 | Msa0629650:intron | 50.0% | |
| GTCTTCAGGGATTCCTGTTG+TGG | - | chr4_3:10548730-10548749 | Msa0629650:intron | 50.0% | |
| AAGCAATCGTCGAGATCACC+TGG | + | chr4_3:10548827-10548846 | None:intergenic | 50.0% | |
| CCTATACAACTTCGGGAGAC+GGG | + | chr4_3:10549051-10549070 | None:intergenic | 50.0% | |
| AGCCTCATGCCTCTGCTTTC+CGG | - | chr4_3:10546338-10546357 | Msa0629650:CDS | 55.0% | |
| ACTACAACCCCGGAAAGCAG+AGG | + | chr4_3:10546350-10546369 | None:intergenic | 55.0% | |
| TAAGGAACGAGCGAGGGCTA+TGG | + | chr4_3:10546980-10546999 | None:intergenic | 55.0% | |
| CCAAGTGTCTCGGACTCTGA+CGG | + | chr4_3:10548689-10548708 | None:intergenic | 55.0% | |
| GTCTCAGAGGCTCTGTCTTC+AGG | - | chr4_3:10548716-10548735 | Msa0629650:intron | 55.0% | |
| CCCGTCTCCCGAAGTTGTAT+AGG | - | chr4_3:10549048-10549067 | Msa0629650:intron | 55.0% | |
| GCCTCATGCCTCTGCTTTCC+GGG | - | chr4_3:10546339-10546358 | Msa0629650:CDS | 60.0% | |
| CCTCATGCCTCTGCTTTCCG+GGG | - | chr4_3:10546340-10546359 | Msa0629650:CDS | 60.0% | |
| CCGTCAGAGTCCGAGACACT+TGG | - | chr4_3:10548686-10548705 | Msa0629650:intron | 60.0% | |
| ! | CCCCGGAAAGCAGAGGCATG+AGG | + | chr4_3:10546343-10546362 | None:intergenic | 65.0% |
| CCTGTTGTGGGCGCACGTGC+CGG | - | chr4_3:10548743-10548762 | Msa0629650:intron | 70.0% | |
| CCGGCACGTGCGCCCACAAC+AGG | + | chr4_3:10548746-10548765 | None:intergenic | 75.0% | |
| GTTGTGGGCGCACGTGCCGG+TGG | - | chr4_3:10548746-10548765 | Msa0629650:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 10545469 | 10549502 | 10545469 | ID=Msa0629650;Name=Msa0629650 |
| chr4_3 | mRNA | 10545469 | 10549502 | 10545469 | ID=Msa0629650-mRNA-1;Parent=Msa0629650;Name=Msa0629650-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.4|0.33|0.66|0.6|0.5|6|433|233 |
| chr4_3 | exon | 10545469 | 10546391 | 10545469 | ID=Msa0629650-mRNA-1:exon:3269;Parent=Msa0629650-mRNA-1 |
| chr4_3 | exon | 10546943 | 10546999 | 10546943 | ID=Msa0629650-mRNA-1:exon:3268;Parent=Msa0629650-mRNA-1 |
| chr4_3 | exon | 10547417 | 10547494 | 10547417 | ID=Msa0629650-mRNA-1:exon:3267;Parent=Msa0629650-mRNA-1 |
| chr4_3 | exon | 10547574 | 10547635 | 10547574 | ID=Msa0629650-mRNA-1:exon:3266;Parent=Msa0629650-mRNA-1 |
| chr4_3 | exon | 10549148 | 10549156 | 10549148 | ID=Msa0629650-mRNA-1:exon:3265;Parent=Msa0629650-mRNA-1 |
| chr4_3 | exon | 10549497 | 10549502 | 10549497 | ID=Msa0629650-mRNA-1:exon:3264;Parent=Msa0629650-mRNA-1 |
| chr4_3 | CDS | 10549497 | 10549502 | 10549497 | ID=Msa0629650-mRNA-1:cds;Parent=Msa0629650-mRNA-1 |
| chr4_3 | CDS | 10549148 | 10549156 | 10549148 | ID=Msa0629650-mRNA-1:cds;Parent=Msa0629650-mRNA-1 |
| chr4_3 | CDS | 10547574 | 10547635 | 10547574 | ID=Msa0629650-mRNA-1:cds;Parent=Msa0629650-mRNA-1 |
| chr4_3 | CDS | 10547417 | 10547494 | 10547417 | ID=Msa0629650-mRNA-1:cds;Parent=Msa0629650-mRNA-1 |
| chr4_3 | CDS | 10546943 | 10546999 | 10546943 | ID=Msa0629650-mRNA-1:cds;Parent=Msa0629650-mRNA-1 |
| chr4_3 | CDS | 10545902 | 10546391 | 10545902 | ID=Msa0629650-mRNA-1:cds;Parent=Msa0629650-mRNA-1 |
| chr4_3 | three_prime_UTR | 10545469 | 10545901 | 10545469 | ID=Msa0629650-mRNA-1:three_prime_utr;Parent=Msa0629650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
