Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0637480 | XP_003605843.1 | 93.777 | 691 | 15 | 7 | 1 | 688 | 1 | 666 | 0.0 | 1310 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0637480 | sp|Q0D3J9|C3H53_ORYSJ | 44.106 | 755 | 272 | 29 | 1 | 678 | 1 | 682 | 1.15e-147 | 448 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0637480 | G7JUR4 | 93.777 | 691 | 15 | 7 | 1 | 688 | 1 | 666 | 0.0 | 1310 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0637480 | Msa0676910 | 0.854533 | 1.155610e-61 | -8.615850e-47 |
| Msa0542580 | Msa0637480 | 0.838019 | 3.687603e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0637480 | MtrunA17_Chr4g0020571 | 93.777 | 691 | 15 | 7 | 1 | 688 | 1 | 666 | 0.0 | 1310 |
| Msa0637480 | MtrunA17_Chr3g0090551 | 61.518 | 738 | 197 | 25 | 1 | 688 | 1 | 701 | 0.0 | 756 |
| Msa0637480 | MtrunA17_Chr5g0396381 | 40.028 | 712 | 337 | 20 | 1 | 654 | 1 | 680 | 2.16e-132 | 405 |
| Msa0637480 | MtrunA17_Chr5g0445571 | 32.448 | 527 | 272 | 17 | 1 | 494 | 1 | 476 | 9.48e-60 | 210 |
| Msa0637480 | MtrunA17_Chr3g0101151 | 31.120 | 527 | 256 | 15 | 1 | 494 | 1 | 453 | 1.71e-51 | 187 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0637480 | AT3G51950.1 | 41.871 | 695 | 242 | 27 | 1 | 688 | 1 | 540 | 1.00e-130 | 397 |
| Msa0637480 | AT3G51950.3 | 41.871 | 695 | 242 | 27 | 1 | 688 | 1 | 540 | 1.00e-130 | 397 |
| Msa0637480 | AT3G51950.2 | 41.871 | 695 | 242 | 27 | 1 | 688 | 1 | 540 | 1.00e-130 | 397 |
| Msa0637480 | AT3G51950.4 | 41.871 | 695 | 242 | 27 | 1 | 688 | 1 | 540 | 1.00e-130 | 397 |
| Msa0637480 | AT3G21100.4 | 39.104 | 647 | 285 | 26 | 1 | 614 | 1 | 571 | 9.56e-109 | 342 |
| Msa0637480 | AT3G21100.3 | 39.104 | 647 | 285 | 26 | 1 | 614 | 1 | 571 | 9.56e-109 | 342 |
| Msa0637480 | AT3G21100.2 | 39.258 | 647 | 283 | 27 | 1 | 614 | 1 | 570 | 6.31e-108 | 340 |
| Msa0637480 | AT3G21100.1 | 39.258 | 647 | 283 | 27 | 1 | 614 | 1 | 570 | 6.31e-108 | 340 |
| Msa0637480 | AT5G12440.4 | 44.750 | 400 | 171 | 13 | 130 | 509 | 160 | 529 | 9.88e-92 | 299 |
| Msa0637480 | AT5G12440.11 | 44.750 | 400 | 171 | 13 | 130 | 509 | 160 | 529 | 9.88e-92 | 299 |
| Msa0637480 | AT5G12440.12 | 44.750 | 400 | 171 | 13 | 130 | 509 | 160 | 529 | 9.88e-92 | 299 |
| Msa0637480 | AT5G12440.7 | 44.750 | 400 | 171 | 13 | 130 | 509 | 160 | 529 | 9.88e-92 | 299 |
| Msa0637480 | AT5G12440.1 | 44.750 | 400 | 171 | 13 | 130 | 509 | 160 | 529 | 9.88e-92 | 299 |
| Msa0637480 | AT5G12440.9 | 44.750 | 400 | 171 | 13 | 130 | 509 | 160 | 529 | 9.88e-92 | 299 |
| Msa0637480 | AT5G12440.2 | 44.750 | 400 | 171 | 13 | 130 | 509 | 160 | 529 | 9.88e-92 | 299 |
| Msa0637480 | AT5G12440.3 | 44.750 | 400 | 171 | 13 | 130 | 509 | 191 | 560 | 1.64e-91 | 299 |
| Msa0637480 | AT5G12440.10 | 44.750 | 400 | 171 | 13 | 130 | 509 | 191 | 560 | 1.64e-91 | 299 |
| Msa0637480 | AT5G12440.8 | 44.750 | 400 | 171 | 13 | 130 | 509 | 191 | 560 | 1.64e-91 | 299 |
| Msa0637480 | AT5G12440.5 | 44.750 | 400 | 171 | 13 | 130 | 509 | 191 | 560 | 1.64e-91 | 299 |
| Msa0637480 | AT5G12440.6 | 44.750 | 400 | 171 | 13 | 130 | 509 | 191 | 560 | 1.64e-91 | 299 |
| Msa0637480 | AT3G63450.3 | 48.443 | 289 | 83 | 10 | 236 | 524 | 86 | 308 | 1.58e-67 | 228 |
| Msa0637480 | AT3G63450.3 | 61.111 | 72 | 28 | 0 | 1 | 72 | 1 | 72 | 2.88e-19 | 91.3 |
| Msa0637480 | AT3G63450.4 | 48.443 | 289 | 83 | 10 | 236 | 524 | 86 | 308 | 1.58e-67 | 228 |
| Msa0637480 | AT3G63450.4 | 61.111 | 72 | 28 | 0 | 1 | 72 | 1 | 72 | 2.88e-19 | 91.3 |
| Msa0637480 | AT3G63450.5 | 48.443 | 289 | 83 | 10 | 236 | 524 | 86 | 308 | 1.58e-67 | 228 |
| Msa0637480 | AT3G63450.5 | 61.111 | 72 | 28 | 0 | 1 | 72 | 1 | 72 | 2.88e-19 | 91.3 |
| Msa0637480 | AT3G63450.2 | 48.097 | 289 | 82 | 9 | 236 | 524 | 86 | 306 | 1.77e-67 | 227 |
| Msa0637480 | AT3G63450.2 | 61.111 | 72 | 28 | 0 | 1 | 72 | 1 | 72 | 2.68e-19 | 91.3 |
| Msa0637480 | AT3G63450.1 | 48.097 | 289 | 82 | 9 | 236 | 524 | 86 | 306 | 1.77e-67 | 227 |
| Msa0637480 | AT3G63450.1 | 61.111 | 72 | 28 | 0 | 1 | 72 | 1 | 72 | 2.68e-19 | 91.3 |
| Msa0637480 | AT3G63450.7 | 48.443 | 289 | 83 | 10 | 236 | 524 | 86 | 308 | 6.13e-67 | 225 |
| Msa0637480 | AT3G63450.7 | 61.111 | 72 | 28 | 0 | 1 | 72 | 1 | 72 | 1.49e-19 | 91.7 |
| Msa0637480 | AT3G63450.6 | 52.361 | 233 | 61 | 5 | 292 | 524 | 16 | 198 | 2.90e-66 | 220 |
| Msa0637480 | AT1G51520.1 | 33.667 | 499 | 235 | 21 | 1 | 488 | 1 | 414 | 5.75e-60 | 207 |
| Msa0637480 | AT1G51520.2 | 30.990 | 626 | 285 | 26 | 1 | 615 | 1 | 490 | 4.77e-59 | 207 |
| Msa0637480 | AT2G05160.2 | 33.034 | 445 | 209 | 13 | 1 | 406 | 1 | 395 | 8.49e-52 | 188 |
| Msa0637480 | AT2G05160.1 | 33.034 | 445 | 209 | 13 | 1 | 406 | 1 | 395 | 8.49e-52 | 188 |
| Msa0637480 | AT2G05160.3 | 33.258 | 445 | 208 | 13 | 1 | 406 | 1 | 395 | 1.05e-51 | 187 |
| Msa0637480 | AT3G52980.1 | 32.924 | 407 | 208 | 16 | 1 | 386 | 1 | 363 | 7.62e-40 | 151 |
Find 185 sgRNAs with CRISPR-Local
Find 323 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAAACACAATGGCTTATT+TGG | 0.135566 | 4_3:+29119703 | None:intergenic |
| AACTTCAGCTTCTCTTGATA+TGG | 0.183404 | 4_3:-29116318 | Msa0637480:CDS |
| AATGAGGAGTTGCACAAATT+TGG | 0.207039 | 4_3:-29118161 | Msa0637480:CDS |
| TATCCTTTCATTTCATATAT+TGG | 0.224654 | 4_3:-29119632 | Msa0637480:five_prime_UTR |
| GGTGATGGTGTTGGCATCTT+TGG | 0.252432 | 4_3:+29115612 | None:intergenic |
| GGTAATTGGCAGTTATTATA+TGG | 0.254267 | 4_3:+29116284 | None:intergenic |
| ATATATTGGATTAAGAAATA+TGG | 0.257306 | 4_3:-29119618 | Msa0637480:intron |
| GGTGCAATAACTTACTTATC+TGG | 0.260574 | 4_3:+29117725 | None:intergenic |
| GAGGATCCAAGTGCTGGTTT+AGG | 0.279247 | 4_3:-29118614 | Msa0637480:CDS |
| AAAAGGAAATTCATGCCTTT+TGG | 0.282854 | 4_3:+29118347 | None:intergenic |
| TCTTCTAGCCATGGAACTAT+TGG | 0.283730 | 4_3:-29116153 | Msa0637480:CDS |
| TTCTGATCCTTCATATGGTT+GGG | 0.287354 | 4_3:-29118702 | Msa0637480:CDS |
| CACACAAAGGTATTATTATT+AGG | 0.288861 | 4_3:-29115429 | Msa0637480:three_prime_UTR |
| CTTCATAACCATCCATGATT+TGG | 0.292152 | 4_3:+29119164 | None:intergenic |
| AAAGAAACTTTACTTGTAAT+AGG | 0.300194 | 4_3:-29119263 | Msa0637480:five_prime_UTR |
| GTTTCAAAACCATGATGATT+TGG | 0.301307 | 4_3:-29118792 | Msa0637480:CDS |
| TAACCATCCCAAACCCTTCT+TGG | 0.303956 | 4_3:-29118844 | Msa0637480:CDS |
| GCTGCTGCTGCTGCAATTGT+TGG | 0.314910 | 4_3:-29118512 | Msa0637480:CDS |
| AAGATGTTTCCGAATACTTC+AGG | 0.317374 | 4_3:-29118025 | Msa0637480:intron |
| CTTCTAGCCATGGAACTATT+GGG | 0.321668 | 4_3:-29116152 | Msa0637480:CDS |
| GATTCAACGTAGGAGGTTAA+TGG | 0.322041 | 4_3:-29117160 | Msa0637480:CDS |
| AACAGTGAAAGTAATGAAAA+TGG | 0.332411 | 4_3:-29116759 | Msa0637480:CDS |
| GTACAAAGGACTTGAAATTA+TGG | 0.336774 | 4_3:+29115385 | None:intergenic |
| AGGATCCAAGTGCTGGTTTA+GGG | 0.341635 | 4_3:-29118613 | Msa0637480:CDS |
| GCATCTACTAGCTCTAAATT+TGG | 0.345288 | 4_3:-29116359 | Msa0637480:CDS |
| GGAACTATTGGGATGTTTGC+CGG | 0.357443 | 4_3:-29116141 | Msa0637480:CDS |
| AATGATGCTTCTTATTTAGC+TGG | 0.358770 | 4_3:-29118641 | Msa0637480:CDS |
| ATGATTCATGTGGTTTGTAT+AGG | 0.362197 | 4_3:-29117438 | Msa0637480:CDS |
| CTAAATAAACCTGAAGTATT+CGG | 0.364140 | 4_3:+29118016 | None:intergenic |
| CAACTTTCTTTCTTGAATGA+TGG | 0.364655 | 4_3:-29118725 | Msa0637480:CDS |
| TGGGAGAGAGAAGAAAATAT+TGG | 0.365756 | 4_3:-29119877 | Msa0637480:five_prime_UTR |
| CTTCACCTAATTTCCTTTCA+AGG | 0.369048 | 4_3:-29118922 | Msa0637480:CDS |
| ACTAGTTGTAGGTTTCTTCA+TGG | 0.371986 | 4_3:-29118545 | Msa0637480:CDS |
| AAAATGTCCTTCACTGTCTC+TGG | 0.372778 | 4_3:+29117821 | None:intergenic |
| ATTCAACGTAGGAGGTTAAT+GGG | 0.383287 | 4_3:-29117159 | Msa0637480:CDS |
| GGGGAAGCAAAAGGGCTATC+AGG | 0.385669 | 4_3:+29116449 | None:intergenic |
| TTCAAAGCTAGAAAAGAGTT+AGG | 0.385736 | 4_3:-29118995 | Msa0637480:CDS |
| TCACCGTGTCGCACTCCAAC+TGG | 0.388538 | 4_3:-29117388 | Msa0637480:CDS |
| TTAGTAGGTCCCTTCTCTAA+TGG | 0.390520 | 4_3:-29116407 | Msa0637480:CDS |
| ATTGTGTTTGTTTGTTTAAG+TGG | 0.393553 | 4_3:-29119692 | Msa0637480:five_prime_UTR |
| TTTCAAGTCCTTTGTACAGC+TGG | 0.394869 | 4_3:-29115379 | Msa0637480:three_prime_UTR |
| TGCAAAACAAGGCGGTGGTT+TGG | 0.397401 | 4_3:-29119746 | Msa0637480:five_prime_UTR |
| AAAATTCATCAACTTCTTCA+AGG | 0.400418 | 4_3:-29118898 | Msa0637480:CDS |
| ACTGAATGAATAAGTGATTC+AGG | 0.400741 | 4_3:+29119022 | None:intergenic |
| CTGCTGCTGCTGCAATTGTT+GGG | 0.404866 | 4_3:-29118511 | Msa0637480:CDS |
| TGAAAATGCATCAAATATCA+TGG | 0.407202 | 4_3:-29119101 | Msa0637480:CDS |
| GCCGATCGGTCCACCGGTGC+CGG | 0.411673 | 4_3:+29116122 | None:intergenic |
| AGATTCTGATCGAACATGTT+AGG | 0.417465 | 4_3:+29117057 | None:intergenic |
| ATCTTCTCATCAACAAAGAT+TGG | 0.420103 | 4_3:-29118426 | Msa0637480:CDS |
| GTTCTGATCCTTCATATGGT+TGG | 0.420579 | 4_3:-29118703 | Msa0637480:CDS |
| TACCAGCAGAAGCGTATGTT+TGG | 0.422823 | 4_3:-29117863 | Msa0637480:CDS |
| AACCATGATGATTTGGTTGT+TGG | 0.425653 | 4_3:-29118785 | Msa0637480:CDS |
| AAGAAAGTTGGTCTTGGAGT+TGG | 0.426471 | 4_3:+29118738 | None:intergenic |
| AGGAGCTTAATTTGCATGAA+TGG | 0.429817 | 4_3:-29116713 | Msa0637480:intron |
| TAGCTACCCAAGAAGGGTTT+GGG | 0.430474 | 4_3:+29118837 | None:intergenic |
| AACATACGCTTCTGCTGGTA+TGG | 0.433918 | 4_3:+29117866 | None:intergenic |
| ACTTCAGCTTCTCTTGATAT+GGG | 0.434350 | 4_3:-29116317 | Msa0637480:CDS |
| GATGGCAGTACCTTGGTAAT+TGG | 0.438358 | 4_3:+29116270 | None:intergenic |
| TAGGAAGCAGCTTCAGCAGC+AGG | 0.440486 | 4_3:-29117419 | Msa0637480:CDS |
| TCAAGAAAGAAAGTTGGTCT+TGG | 0.441160 | 4_3:+29118732 | None:intergenic |
| TCTGAATCAATGGTCTCTAA+TGG | 0.441921 | 4_3:+29116383 | None:intergenic |
| TGCTGCTGCTTCTCAACTCA+TGG | 0.446295 | 4_3:-29118393 | Msa0637480:CDS |
| AAGTAGATTTGTCTTGAAGC+TGG | 0.446416 | 4_3:+29118080 | None:intergenic |
| AACCATCCCAAACCCTTCTT+GGG | 0.448617 | 4_3:-29118843 | Msa0637480:CDS |
| TGGTAGGTAGGGTTTATTTG+TGG | 0.451555 | 4_3:-29119291 | Msa0637480:five_prime_UTR |
| TGGAGTTGGAAATCATCAAT+TGG | 0.455092 | 4_3:+29118752 | None:intergenic |
| CAATCAGTCAATGGTTATGT+TGG | 0.459178 | 4_3:-29116813 | Msa0637480:CDS |
| TGAGCAAAGGAAAGAGTTAG+AGG | 0.460517 | 4_3:+29118370 | None:intergenic |
| AGTAATGCTTCTGTTTCTGC+TGG | 0.461227 | 4_3:-29116840 | Msa0637480:CDS |
| GATGGTGTTGGCATCTTTGG+TGG | 0.461897 | 4_3:+29115615 | None:intergenic |
| GTAGCTACCCAAGAAGGGTT+TGG | 0.462332 | 4_3:+29118836 | None:intergenic |
| TGCACAAATTTGGAAGATCA+AGG | 0.462736 | 4_3:-29118151 | Msa0637480:CDS |
| AACTCAGAGCTTCTGCGAAA+AGG | 0.462826 | 4_3:+29117027 | None:intergenic |
| TTTGGGATGGTTAGAGAAGG+TGG | 0.466291 | 4_3:+29118854 | None:intergenic |
| GAATAAATGCAGTTTGGAGT+TGG | 0.467079 | 4_3:-29116483 | Msa0637480:intron |
| GATGGTTCTGATCCTTCATA+TGG | 0.468864 | 4_3:-29118707 | Msa0637480:CDS |
| GGGATGTTTGCCGGCACCGG+TGG | 0.476292 | 4_3:-29116132 | Msa0637480:CDS |
| GAAGGTGATGGAGGAGTTGA+AGG | 0.476556 | 4_3:+29118941 | None:intergenic |
| GAGGTAATTCTTCTCTTCAT+AGG | 0.476864 | 4_3:-29118679 | Msa0637480:CDS |
| AGTATAGTATTGATGATTGA+TGG | 0.480918 | 4_3:+29115591 | None:intergenic |
| AGGAGAATGAACTAGACTTC+CGG | 0.481899 | 4_3:+29117089 | None:intergenic |
| GAAAATATTGGATATAGAAA+CGG | 0.482183 | 4_3:-29119865 | Msa0637480:five_prime_UTR |
| CATGATGATTTGGTTGTTGG+TGG | 0.482251 | 4_3:-29118782 | Msa0637480:CDS |
| TCTCTGAAAGTACTATCAGC+TGG | 0.483478 | 4_3:+29118050 | None:intergenic |
| TCTGATCCTTCATATGGTTG+GGG | 0.483566 | 4_3:-29118701 | Msa0637480:CDS |
| GGAATCCTCACATCTTGAAC+AGG | 0.483680 | 4_3:+29117887 | None:intergenic |
| CTCAGTAGTTACTGCCCCAC+AGG | 0.484969 | 4_3:-29115473 | Msa0637480:three_prime_UTR |
| TCTTTCCTTTGCTCACCAAA+AGG | 0.487823 | 4_3:-29118362 | Msa0637480:CDS |
| ATTGGGATGTTTGCCGGCAC+CGG | 0.489063 | 4_3:-29116135 | Msa0637480:CDS |
| TGGAAAGTGCGCGTTGGTGT+TGG | 0.491134 | 4_3:+29117112 | None:intergenic |
| TAACAAGATTGAAAATATGA+TGG | 0.492689 | 4_3:-29118483 | Msa0637480:CDS |
| TTCAGTAAAGGAAGTGGGGC+AGG | 0.493411 | 4_3:-29115530 | Msa0637480:three_prime_UTR |
| GTGCAATAACTTACTTATCT+GGG | 0.495777 | 4_3:+29117726 | None:intergenic |
| GGTTCTGAGGATCCAAGTGC+TGG | 0.496209 | 4_3:-29118620 | Msa0637480:CDS |
| AGTAGATGCATCTGAATCAA+TGG | 0.498343 | 4_3:+29116373 | None:intergenic |
| TACCAAGTTGAAGATCATAT+TGG | 0.501397 | 4_3:+29117347 | None:intergenic |
| ACTTCTTCAAGGCTTAGTAC+TGG | 0.503797 | 4_3:-29118887 | Msa0637480:CDS |
| TTAATGATTATATGAGTAAG+TGG | 0.508052 | 4_3:-29119897 | Msa0637480:five_prime_UTR |
| GTGTTGGTCAATAGTGAGAA+TGG | 0.514825 | 4_3:-29116783 | Msa0637480:CDS |
| TGTTAAGCCTTACAAGGAGA+AGG | 0.518187 | 4_3:-29117756 | Msa0637480:CDS |
| GGTGTTGGCATCTTTGGTGG+TGG | 0.520609 | 4_3:+29115618 | None:intergenic |
| CGAGCCTCACAAACAAAATG+AGG | 0.520727 | 4_3:+29117785 | None:intergenic |
| AGTACTTGTTAAGCCTTACA+AGG | 0.523363 | 4_3:-29117762 | Msa0637480:CDS |
| GCTTCCCCTACAAAAGCTGT+TGG | 0.529137 | 4_3:-29116434 | Msa0637480:CDS |
| CTCTAATGGTCCATTAGAGA+AGG | 0.531820 | 4_3:+29116397 | None:intergenic |
| GCCGGCACCGGTGGACCGAT+CGG | 0.535535 | 4_3:-29116123 | Msa0637480:CDS |
| TAGGAAGTAGCTCCTTTCAC+AGG | 0.535965 | 4_3:-29115410 | Msa0637480:three_prime_UTR |
| CTCTGAAAGTACTATCAGCT+GGG | 0.538342 | 4_3:+29118051 | None:intergenic |
| CCTTCTGCAAAACAAGGCGG+TGG | 0.541998 | 4_3:-29119751 | Msa0637480:five_prime_UTR |
| CTCTTGAGATTCAACGTAGG+AGG | 0.543490 | 4_3:-29117167 | Msa0637480:CDS |
| GAAATTATGGTACCTGTGAA+AGG | 0.544287 | 4_3:+29115398 | None:intergenic |
| GGAGGAGTTGAAGGTGTTGG+TGG | 0.544429 | 4_3:+29118950 | None:intergenic |
| TTCTTGAACCAAATCATGGA+TGG | 0.545135 | 4_3:-29119172 | Msa0637480:exon |
| ATAGTAGTAGCTACCCAAGA+AGG | 0.546177 | 4_3:+29118830 | None:intergenic |
| ATGATTGATGGTGATGGTGT+TGG | 0.548035 | 4_3:+29115603 | None:intergenic |
| CTAAATGCCGATCGGTCCAC+CGG | 0.549882 | 4_3:+29116116 | None:intergenic |
| GGATGGTTAGAGAAGGTGGA+AGG | 0.550377 | 4_3:+29118858 | None:intergenic |
| GCAGTTTCAGTAAAGGAAGT+GGG | 0.551076 | 4_3:-29115535 | Msa0637480:three_prime_UTR |
| TTCTTATTTAGCTGGTTCTG+AGG | 0.551260 | 4_3:-29118633 | Msa0637480:CDS |
| CTGAAGACATGTTGTGGAGG+AGG | 0.552660 | 4_3:-29117218 | Msa0637480:CDS |
| AGCCAAACATACGCTTCTGC+TGG | 0.552768 | 4_3:+29117861 | None:intergenic |
| AAAGCTGTTGGAGACTTAGT+AGG | 0.552915 | 4_3:-29116422 | Msa0637480:CDS |
| CATCATTCAAGAAAGAAAGT+TGG | 0.553431 | 4_3:+29118726 | None:intergenic |
| GGTGGAGAGTTATTAGAACA+AGG | 0.554052 | 4_3:+29118968 | None:intergenic |
| CACCAACGCGCACTTTCCAC+CGG | 0.557494 | 4_3:-29117108 | Msa0637480:CDS |
| AAATTAGGTGAAGGTGATGG+AGG | 0.557722 | 4_3:+29118932 | None:intergenic |
| GCTGGTCAACAATCAGTCAA+TGG | 0.558529 | 4_3:-29116822 | Msa0637480:CDS |
| CTGAAACATAATATTATCAA+AGG | 0.559533 | 4_3:+29115187 | None:intergenic |
| AGCAGTTTCAGTAAAGGAAG+TGG | 0.564046 | 4_3:-29115536 | Msa0637480:three_prime_UTR |
| GAAAATGCATCAAATATCAT+GGG | 0.565223 | 4_3:-29119100 | Msa0637480:CDS |
| GATGGAGGAGTTGAAGGTGT+TGG | 0.569843 | 4_3:+29118947 | None:intergenic |
| GATGGGGCAGTATAAGTGAA+TGG | 0.570987 | 4_3:-29119787 | Msa0637480:five_prime_UTR |
| TTGGTCCTGTTCAAGATGTG+AGG | 0.573377 | 4_3:-29117892 | Msa0637480:CDS |
| AAAAGCATGCACATATGAAG+TGG | 0.573833 | 4_3:-29115337 | Msa0637480:three_prime_UTR |
| TTACCTCCCCAACCATATGA+AGG | 0.573835 | 4_3:+29118695 | None:intergenic |
| GTTAAGCCTTACAAGGAGAA+GGG | 0.574645 | 4_3:-29117755 | Msa0637480:CDS |
| AATCCAATATATGAAATGAA+AGG | 0.574818 | 4_3:+29119629 | None:intergenic |
| TAATGATTATATGAGTAAGT+GGG | 0.574967 | 4_3:-29119896 | Msa0637480:five_prime_UTR |
| CTAGCATCAACAAGTCCAGT+TGG | 0.578010 | 4_3:+29117373 | None:intergenic |
| AGTCAATGGTTATGTTGGCA+AGG | 0.578685 | 4_3:-29116808 | Msa0637480:CDS |
| AGACATGTTGTGGAGGAGGA+AGG | 0.581194 | 4_3:-29117214 | Msa0637480:CDS |
| GACCAATATGATCTTCAACT+TGG | 0.581274 | 4_3:-29117349 | Msa0637480:intron |
| CAGAAGCTCTGAGTTCTCAG+AGG | 0.582387 | 4_3:-29117019 | Msa0637480:CDS |
| GACAAGCTCAAATCATGAAG+AGG | 0.585776 | 4_3:-29116733 | Msa0637480:CDS |
| GGGTTTGGGATGGTTAGAGA+AGG | 0.586472 | 4_3:+29118851 | None:intergenic |
| ATATCAAGAGAAGCTGAAGT+TGG | 0.586830 | 4_3:+29116320 | None:intergenic |
| CACCAACAACCAAATCATCA+TGG | 0.590260 | 4_3:+29118783 | None:intergenic |
| TGCAGCTCTAATGATGAATG+AGG | 0.594350 | 4_3:-29118177 | Msa0637480:CDS |
| CAAACATCCCAATAGTTCCA+TGG | 0.594858 | 4_3:+29116145 | None:intergenic |
| AAGCTCACAATAGTAGCAAG+AGG | 0.597653 | 4_3:+29115086 | None:intergenic |
| AAAATCAAAATGATACTCAA+AGG | 0.597880 | 4_3:-29118313 | Msa0637480:intron |
| TTGCTTCTTAGTAAAGAGCA+TGG | 0.599243 | 4_3:-29119076 | Msa0637480:CDS |
| CCTCTTGCAAAATAAAGACA+TGG | 0.600057 | 4_3:+29118584 | None:intergenic |
| GATCCTTCATATGGTTGGGG+AGG | 0.600288 | 4_3:-29118698 | Msa0637480:CDS |
| TTCCGGTGGAAAGTGCGCGT+TGG | 0.604828 | 4_3:+29117106 | None:intergenic |
| ACAACACTGAAGACATGTTG+TGG | 0.606056 | 4_3:-29117224 | Msa0637480:CDS |
| ATCCAAGTGCTGGTTTAGGG+TGG | 0.607801 | 4_3:-29118610 | Msa0637480:CDS |
| AGGAAATTAGGTGAAGGTGA+TGG | 0.608102 | 4_3:+29118929 | None:intergenic |
| TTCCACCCTAAACCAGCACT+TGG | 0.608573 | 4_3:+29118608 | None:intergenic |
| CTTGAAAGGAAATTAGGTGA+AGG | 0.619146 | 4_3:+29118923 | None:intergenic |
| TACCCAAGAAGGGTTTGGGA+TGG | 0.619888 | 4_3:+29118841 | None:intergenic |
| TGGTTATGAAGCAACTAAGA+TGG | 0.623405 | 4_3:-29119152 | Msa0637480:CDS |
| AGGAAGCAGCTTCAGCAGCA+GGG | 0.623572 | 4_3:-29117418 | Msa0637480:CDS |
| ATAATGCTCCAGCTGTACAA+AGG | 0.623606 | 4_3:+29115371 | None:intergenic |
| ACTTAAACAAACAAACACAA+TGG | 0.624737 | 4_3:+29119694 | None:intergenic |
| TCTAATGGTCCATTAGAGAA+GGG | 0.630191 | 4_3:+29116398 | None:intergenic |
| AGAAGCTCTGAGTTCTCAGA+GGG | 0.630291 | 4_3:-29117018 | Msa0637480:intron |
| TTATGTTGGCAAGGAAGTGT+TGG | 0.631890 | 4_3:-29116799 | Msa0637480:CDS |
| TAGTAGTAGCTACCCAAGAA+GGG | 0.633677 | 4_3:+29118831 | None:intergenic |
| TATGCTCATCATGATTCATG+TGG | 0.635403 | 4_3:-29117448 | Msa0637480:CDS |
| ACTGCTCCTTCTGCAAAACA+AGG | 0.635900 | 4_3:-29119757 | Msa0637480:five_prime_UTR |
| CAGTTTCAGTAAAGGAAGTG+GGG | 0.640959 | 4_3:-29115534 | Msa0637480:three_prime_UTR |
| CAGGAAAACTAAATGCCGAT+CGG | 0.643458 | 4_3:+29116108 | None:intergenic |
| GCTGGATTAATCATTCCAGT+AGG | 0.644972 | 4_3:+29118098 | None:intergenic |
| ATAATAACTGCCAATTACCA+AGG | 0.653801 | 4_3:-29116280 | Msa0637480:intron |
| GAGCCTCACAAACAAAATGA+GGG | 0.658530 | 4_3:+29117786 | None:intergenic |
| AGTCCAGTTGGAGTGCGACA+CGG | 0.665479 | 4_3:+29117385 | None:intergenic |
| AGAATGAACTAGACTTCCGG+TGG | 0.670680 | 4_3:+29117092 | None:intergenic |
| GTATTGATGATTGATGGTGA+TGG | 0.677453 | 4_3:+29115597 | None:intergenic |
| ACACTGAAGACATGTTGTGG+AGG | 0.690618 | 4_3:-29117221 | Msa0637480:CDS |
| TTCAACGTAGGAGGTTAATG+GGG | 0.699821 | 4_3:-29117158 | Msa0637480:CDS |
| AGCTGATAGTACTTTCAGAG+AGG | 0.701721 | 4_3:-29118048 | Msa0637480:CDS |
| GCTCCTTCTGCAAAACAAGG+CGG | 0.720204 | 4_3:-29119754 | Msa0637480:five_prime_UTR |
| AACATGTTAGGAGATTGAGT+AGG | 0.740499 | 4_3:+29117069 | None:intergenic |
| AAGCTCTTGAGATTCAACGT+AGG | 0.757112 | 4_3:-29117170 | Msa0637480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATTTTTGTTTTCTATTA+AGG | - | chr4_3:29115734-29115753 | Msa0637480:intron | 10.0% |
| !! | ATAATAATGTAATAATTACA+GGG | - | chr4_3:29116745-29116764 | Msa0637480:CDS | 10.0% |
| !! | AAAATTTCAACAAAAATTAT+AGG | + | chr4_3:29118742-29118761 | None:intergenic | 10.0% |
| !!! | TTTGAAAATTTTAATTGATT+TGG | - | chr4_3:29118759-29118778 | Msa0637480:CDS | 10.0% |
| !!! | TTAATTATTTTCATATATGA+AGG | - | chr4_3:29119138-29119157 | Msa0637480:CDS | 10.0% |
| !! | ATATATTGGATTAAGAAATA+TGG | - | chr4_3:29115334-29115353 | Msa0637480:three_prime_UTR | 15.0% |
| !! | GATAATAATGTAATAATTAC+AGG | - | chr4_3:29116744-29116763 | Msa0637480:CDS | 15.0% |
| !! | GCTTCTTAAAAAAAAAAAAT+TGG | - | chr4_3:29117402-29117421 | Msa0637480:CDS | 15.0% |
| !! | TACTTAATCTAAATGAAAAT+AGG | + | chr4_3:29118272-29118291 | None:intergenic | 15.0% |
| !! | ATTAAGTAAAACTTCTAATA+GGG | - | chr4_3:29118284-29118303 | Msa0637480:intron | 15.0% |
| !! | TTGATTCTCATTTAAATTAA+AGG | - | chr4_3:29118423-29118442 | Msa0637480:CDS | 15.0% |
| !! | TGATTCTCATTTAAATTAAA+GGG | - | chr4_3:29118424-29118443 | Msa0637480:CDS | 15.0% |
| !!! | ATTTTAATTGATTTGGAATT+TGG | - | chr4_3:29118766-29118785 | Msa0637480:CDS | 15.0% |
| !!! | GTTTTATTAAATTTAGAAGT+CGG | - | chr4_3:29119213-29119232 | Msa0637480:five_prime_UTR | 15.0% |
| !!! | AATTTTTTTTTTTTACCTGT+GGG | + | chr4_3:29119497-29119516 | None:intergenic | 15.0% |
| !!! | TAATTTTTTTTTTTTACCTG+TGG | + | chr4_3:29119498-29119517 | None:intergenic | 15.0% |
| !! | AAAAATTAAATAACACACAA+AGG | - | chr4_3:29119510-29119529 | Msa0637480:intron | 15.0% |
| !!! | GTATTTTTAGACTTAAAAAT+TGG | - | chr4_3:29119835-29119854 | Msa0637480:five_prime_UTR | 15.0% |
| !! | TTAATGATTATATGAGTAAG+TGG | - | chr4_3:29115055-29115074 | Msa0637480:three_prime_UTR | 20.0% |
| !! | TAATGATTATATGAGTAAGT+GGG | - | chr4_3:29115056-29115075 | Msa0637480:three_prime_UTR | 20.0% |
| !! | GAAAATATTGGATATAGAAA+CGG | - | chr4_3:29115087-29115106 | Msa0637480:three_prime_UTR | 20.0% |
| !! | TATCCTTTCATTTCATATAT+TGG | - | chr4_3:29115320-29115339 | Msa0637480:three_prime_UTR | 20.0% |
| !! | AATCCAATATATGAAATGAA+AGG | + | chr4_3:29115326-29115345 | None:intergenic | 20.0% |
| !!! | TTTGTTTTTTGGTTTTGTTT+TGG | - | chr4_3:29115381-29115400 | Msa0637480:three_prime_UTR | 20.0% |
| !! | AATAAGAGAGAAAAAAAGAA+AGG | + | chr4_3:29115504-29115523 | None:intergenic | 20.0% |
| !! | AAAGTTAAAGAAGAAGAAAA+AGG | + | chr4_3:29115581-29115600 | None:intergenic | 20.0% |
| !! | AAAGAAACTTTACTTGTAAT+AGG | - | chr4_3:29115689-29115708 | Msa0637480:intron | 20.0% |
| !!! | ATCATATTTTCAATCTTGTT+AGG | + | chr4_3:29116470-29116489 | None:intergenic | 20.0% |
| !! | TAACAAGATTGAAAATATGA+TGG | - | chr4_3:29116469-29116488 | Msa0637480:CDS | 20.0% |
| !! | AAAATCAAAATGATACTCAA+AGG | - | chr4_3:29116639-29116658 | Msa0637480:intron | 20.0% |
| !!! | TACTTTTTTTGAAGCAAATT+TGG | - | chr4_3:29117041-29117060 | Msa0637480:CDS | 20.0% |
| !! | GATTAAGTAAAACTTCTAAT+AGG | - | chr4_3:29118283-29118302 | Msa0637480:intron | 20.0% |
| !!! | CAGAATTTTTGTTTTTAACA+TGG | + | chr4_3:29118365-29118384 | None:intergenic | 20.0% |
| !! | CATGTTAAAAACAAAAATTC+TGG | - | chr4_3:29118363-29118382 | Msa0637480:CDS | 20.0% |
| !! | GAATCAATGTTAGAAAAAAT+TGG | + | chr4_3:29118410-29118429 | None:intergenic | 20.0% |
| !! | TATGAAAATTGTTACAACAA+CGG | - | chr4_3:29119025-29119044 | Msa0637480:CDS | 20.0% |
| !!! | ATTTTCATATATGAAGGAAA+TGG | - | chr4_3:29119144-29119163 | Msa0637480:CDS | 20.0% |
| !! | TTCTGTTATGTTAATATTGA+CGG | - | chr4_3:29119179-29119198 | Msa0637480:exon | 20.0% |
| !! | AGAAAAAGAAAGAAAAGAAA+TGG | + | chr4_3:29119448-29119467 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTTTTTACCTGTG+GGG | + | chr4_3:29119496-29119515 | None:intergenic | 20.0% |
| !! | TTGAGTTAAAGTTAAAAAAG+AGG | - | chr4_3:29119733-29119752 | Msa0637480:five_prime_UTR | 20.0% |
| !! | CTGAAACATAATATTATCAA+AGG | + | chr4_3:29119768-29119787 | None:intergenic | 20.0% |
| !!! | TGTGTGTGTTTTTATTTATG+GGG | + | chr4_3:29115145-29115164 | None:intergenic | 25.0% |
| !!! | CTGTGTGTGTTTTTATTTAT+GGG | + | chr4_3:29115146-29115165 | None:intergenic | 25.0% |
| !!! | TCTGTGTGTGTTTTTATTTA+TGG | + | chr4_3:29115147-29115166 | None:intergenic | 25.0% |
| ! | TAAATAAAAACACACACAGA+TGG | - | chr4_3:29115147-29115166 | Msa0637480:three_prime_UTR | 25.0% |
| ! | AAATAAAAACACACACAGAT+GGG | - | chr4_3:29115148-29115167 | Msa0637480:three_prime_UTR | 25.0% |
| ! | ACTTAAACAAACAAACACAA+TGG | + | chr4_3:29115261-29115280 | None:intergenic | 25.0% |
| ! | ATTGTGTTTGTTTGTTTAAG+TGG | - | chr4_3:29115260-29115279 | Msa0637480:three_prime_UTR | 25.0% |
| !!! | TTTTGGTTTTGTTTTGGTTT+TGG | - | chr4_3:29115387-29115406 | Msa0637480:three_prime_UTR | 25.0% |
| ! | AGAGAGACATAATAATATGA+TGG | + | chr4_3:29115470-29115489 | None:intergenic | 25.0% |
| !!! | GAAACATACTCATTTTAACT+TGG | - | chr4_3:29115641-29115660 | Msa0637480:three_prime_UTR | 25.0% |
| !!! | TTTTTTCTTGAACCAAATCA+TGG | - | chr4_3:29115776-29115795 | Msa0637480:intron | 25.0% |
| !! | TGATATTTGATGCATTTTCA+GGG | + | chr4_3:29115851-29115870 | None:intergenic | 25.0% |
| !! | ATGATATTTGATGCATTTTC+AGG | + | chr4_3:29115852-29115871 | None:intergenic | 25.0% |
| ! | TGAAAATGCATCAAATATCA+TGG | - | chr4_3:29115851-29115870 | Msa0637480:intron | 25.0% |
| ! | GAAAATGCATCAAATATCAT+GGG | - | chr4_3:29115852-29115871 | Msa0637480:intron | 25.0% |
| ! | AAAATTCATCAACTTCTTCA+AGG | - | chr4_3:29116054-29116073 | Msa0637480:intron | 25.0% |
| !! | CTAAATAAACCTGAAGTATT+CGG | + | chr4_3:29116939-29116958 | None:intergenic | 25.0% |
| ! | TGCAATTTACAACATTGAAA+AGG | + | chr4_3:29117464-29117483 | None:intergenic | 25.0% |
| ! | AACAGTGAAAGTAATGAAAA+TGG | - | chr4_3:29118193-29118212 | Msa0637480:intron | 25.0% |
| ! | GGAACTTATTGCAAAAAAAA+AGG | + | chr4_3:29118332-29118351 | None:intergenic | 25.0% |
| !!! | TTTTAACATGGACTAAAAAG+AGG | + | chr4_3:29118353-29118372 | None:intergenic | 25.0% |
| ! | AAAAATTCTGGCATTTATTC+AGG | - | chr4_3:29118375-29118394 | Msa0637480:CDS | 25.0% |
| ! | AAAGGGACTTTGTATTTAAA+TGG | - | chr4_3:29118441-29118460 | Msa0637480:CDS | 25.0% |
| ! | GTTAATGAATAAATGCAGTT+TGG | - | chr4_3:29118463-29118482 | Msa0637480:CDS | 25.0% |
| ! | TTCTTAACATGAACATTGAA+AGG | + | chr4_3:29118891-29118910 | None:intergenic | 25.0% |
| ! | TTTCATATAGAGTGTATCTT+TGG | + | chr4_3:29119012-29119031 | None:intergenic | 25.0% |
| ! | TTAAGATGTTAGAGACAAAA+CGG | - | chr4_3:29119055-29119074 | Msa0637480:CDS | 25.0% |
| !!! | TCTCTACATATTTTTGTTGT+TGG | + | chr4_3:29119307-29119326 | None:intergenic | 25.0% |
| !!! | AGTATAGTATTGATGATTGA+TGG | + | chr4_3:29119364-29119383 | None:intergenic | 25.0% |
| !! | TTTTACGTATGGATTTTGTA+TGG | + | chr4_3:29119395-29119414 | None:intergenic | 25.0% |
| ! | TAAAAAAGCAGTTTCAGTAA+AGG | - | chr4_3:29119410-29119429 | Msa0637480:intron | 25.0% |
| !!! | CACACAAAGGTATTATTATT+AGG | - | chr4_3:29119523-29119542 | Msa0637480:intron | 25.0% |
| !!! | TTTCTAAAATCTTTTCTGTC+TGG | + | chr4_3:29119799-29119818 | None:intergenic | 25.0% |
| !!! | TGTGAGCTTTTTGATTTTAA+AGG | - | chr4_3:29119880-29119899 | Msa0637480:five_prime_UTR | 25.0% |
| AATAAAAACACACACAGATG+GGG | - | chr4_3:29115149-29115168 | Msa0637480:three_prime_UTR | 30.0% | |
| AACAAACACAATGGCTTATT+TGG | + | chr4_3:29115252-29115271 | None:intergenic | 30.0% | |
| GAGACATAATAATATGATGG+TGG | + | chr4_3:29115467-29115486 | None:intergenic | 30.0% | |
| TTAAAAGTAGTATTCTCGTG+TGG | + | chr4_3:29115533-29115552 | None:intergenic | 30.0% | |
| AAGAAGAAGAAAAAGGAGAT+GGG | + | chr4_3:29115574-29115593 | None:intergenic | 30.0% | |
| AAAGAAGAAGAAAAAGGAGA+TGG | + | chr4_3:29115575-29115594 | None:intergenic | 30.0% | |
| !!! | CATACTCATTTTAACTTGGT+AGG | - | chr4_3:29115645-29115664 | Msa0637480:intron | 30.0% |
| !!! | TCATTTTAACTTGGTAGGTA+GGG | - | chr4_3:29115650-29115669 | Msa0637480:intron | 30.0% |
| !! | GTTTTCAAGGATCAAAAACA+TGG | - | chr4_3:29115824-29115843 | Msa0637480:intron | 30.0% |
| ACTGAATGAATAAGTGATTC+AGG | + | chr4_3:29115933-29115952 | None:intergenic | 30.0% | |
| TTCAAAGCTAGAAAAGAGTT+AGG | - | chr4_3:29115957-29115976 | Msa0637480:intron | 30.0% | |
| ! | TTTTGCCTTGAAAGGAAATT+AGG | + | chr4_3:29116038-29116057 | None:intergenic | 30.0% |
| ! | TTGATGAATTTTGCCTTGAA+AGG | + | chr4_3:29116046-29116065 | None:intergenic | 30.0% |
| GTTTCAAAACCATGATGATT+TGG | - | chr4_3:29116160-29116179 | Msa0637480:CDS | 30.0% | |
| CATCATTCAAGAAAGAAAGT+TGG | + | chr4_3:29116229-29116248 | None:intergenic | 30.0% | |
| CAACTTTCTTTCTTGAATGA+TGG | - | chr4_3:29116227-29116246 | Msa0637480:intron | 30.0% | |
| ! | AATGATGCTTCTTATTTAGC+TGG | - | chr4_3:29116311-29116330 | Msa0637480:CDS | 30.0% |
| !!! | CATGTCTTTATTTTGCAAGA+GGG | - | chr4_3:29116369-29116388 | Msa0637480:CDS | 30.0% |
| GTAAAAATGGTACTAGTTGT+AGG | - | chr4_3:29116396-29116415 | Msa0637480:CDS | 30.0% | |
| ATCTTCTCATCAACAAAGAT+TGG | - | chr4_3:29116526-29116545 | Msa0637480:intron | 30.0% | |
| ! | AAAAGGAAATTCATGCCTTT+TGG | + | chr4_3:29116608-29116627 | None:intergenic | 30.0% |
| GTGCAATAACTTACTTATCT+GGG | + | chr4_3:29117229-29117248 | None:intergenic | 30.0% | |
| CTAAATTAGTCCACTTAAAC+TGG | + | chr4_3:29117383-29117402 | None:intergenic | 30.0% | |
| ! | ATGATTCATGTGGTTTGTAT+AGG | - | chr4_3:29117514-29117533 | Msa0637480:intron | 30.0% |
| ! | TACCAAGTTGAAGATCATAT+TGG | + | chr4_3:29117608-29117627 | None:intergenic | 30.0% |
| AATATGATCTTCAACTTGGT+AGG | - | chr4_3:29117607-29117626 | Msa0637480:intron | 30.0% | |
| AAGATACATCACATGTTAAG+AGG | + | chr4_3:29117678-29117697 | None:intergenic | 30.0% | |
| GGTAATTGGCAGTTATTATA+TGG | + | chr4_3:29118671-29118690 | None:intergenic | 30.0% | |
| ATAATAACTGCCAATTACCA+AGG | - | chr4_3:29118672-29118691 | Msa0637480:CDS | 30.0% | |
| AATGGAAAGATGAAATGTGA+TGG | + | chr4_3:29118703-29118722 | None:intergenic | 30.0% | |
| !! | TTGATTTGGAATTTGGACTT+AGG | - | chr4_3:29118773-29118792 | Msa0637480:CDS | 30.0% |
| ! | ATTAATTTTACCTGAACCTC+AGG | + | chr4_3:29118866-29118885 | None:intergenic | 30.0% |
| GTCTAGTGTCTCTATAAATT+TGG | - | chr4_3:29118921-29118940 | Msa0637480:CDS | 30.0% | |
| ! | TTTAAAATCACGATAAGCCA+CGG | - | chr4_3:29118981-29119000 | Msa0637480:CDS | 30.0% |
| GTCTCTAACATCTTAACAAT+GGG | + | chr4_3:29119051-29119070 | None:intergenic | 30.0% | |
| TGTCTCTAACATCTTAACAA+TGG | + | chr4_3:29119052-29119071 | None:intergenic | 30.0% | |
| !!! | TTTTGTTGTTGGATTTGTCA+AGG | + | chr4_3:29119296-29119315 | None:intergenic | 30.0% |
| !!! | TGAAACTGCTTTTTTACGTA+TGG | + | chr4_3:29119406-29119425 | None:intergenic | 30.0% |
| GTACAAAGGACTTGAAATTA+TGG | + | chr4_3:29119570-29119589 | None:intergenic | 30.0% | |
| TGGGAGAGAGAAGAAAATAT+TGG | - | chr4_3:29115075-29115094 | Msa0637480:three_prime_UTR | 35.0% | |
| ! | TTTCTCTTGTTATGCTTTGC+AGG | - | chr4_3:29115603-29115622 | Msa0637480:three_prime_UTR | 35.0% |
| !!! | CTCATTTTAACTTGGTAGGT+AGG | - | chr4_3:29115649-29115668 | Msa0637480:intron | 35.0% |
| TTCTTGAACCAAATCATGGA+TGG | - | chr4_3:29115780-29115799 | Msa0637480:intron | 35.0% | |
| CTTCATAACCATCCATGATT+TGG | + | chr4_3:29115791-29115810 | None:intergenic | 35.0% | |
| TGGTTATGAAGCAACTAAGA+TGG | - | chr4_3:29115800-29115819 | Msa0637480:intron | 35.0% | |
| ! | CAACTAAGATGGTGTTTTCA+AGG | - | chr4_3:29115811-29115830 | Msa0637480:intron | 35.0% |
| TTGCTTCTTAGTAAAGAGCA+TGG | - | chr4_3:29115876-29115895 | Msa0637480:intron | 35.0% | |
| CTTGAAAGGAAATTAGGTGA+AGG | + | chr4_3:29116032-29116051 | None:intergenic | 35.0% | |
| CTTCACCTAATTTCCTTTCA+AGG | - | chr4_3:29116030-29116049 | Msa0637480:intron | 35.0% | |
| !! | AACCATGATGATTTGGTTGT+TGG | - | chr4_3:29116167-29116186 | Msa0637480:intron | 35.0% |
| TGGAGTTGGAAATCATCAAT+TGG | + | chr4_3:29116203-29116222 | None:intergenic | 35.0% | |
| ! | TCAAGAAAGAAAGTTGGTCT+TGG | + | chr4_3:29116223-29116242 | None:intergenic | 35.0% |
| TTCTGATCCTTCATATGGTT+GGG | - | chr4_3:29116250-29116269 | Msa0637480:intron | 35.0% | |
| GAGGTAATTCTTCTCTTCAT+AGG | - | chr4_3:29116273-29116292 | Msa0637480:intron | 35.0% | |
| !! | TTCTTATTTAGCTGGTTCTG+AGG | - | chr4_3:29116319-29116338 | Msa0637480:CDS | 35.0% |
| CCTCTTGCAAAATAAAGACA+TGG | + | chr4_3:29116371-29116390 | None:intergenic | 35.0% | |
| !!! | CCATGTCTTTATTTTGCAAG+AGG | - | chr4_3:29116368-29116387 | Msa0637480:CDS | 35.0% |
| ACTAGTTGTAGGTTTCTTCA+TGG | - | chr4_3:29116407-29116426 | Msa0637480:CDS | 35.0% | |
| ! | GATTTTGTTGCTGCTGTAAA+AGG | + | chr4_3:29116625-29116644 | None:intergenic | 35.0% |
| AATGAGGAGTTGCACAAATT+TGG | - | chr4_3:29116791-29116810 | Msa0637480:CDS | 35.0% | |
| TGCACAAATTTGGAAGATCA+AGG | - | chr4_3:29116801-29116820 | Msa0637480:CDS | 35.0% | |
| ! | TTTTCTTTGTACAGTCCTAC+TGG | - | chr4_3:29116839-29116858 | Msa0637480:CDS | 35.0% |
| AAGTAGATTTGTCTTGAAGC+TGG | + | chr4_3:29116875-29116894 | None:intergenic | 35.0% | |
| AAGATGTTTCCGAATACTTC+AGG | - | chr4_3:29116927-29116946 | Msa0637480:intron | 35.0% | |
| ! | GTGAAGGACATTTTGTCTAA+AGG | - | chr4_3:29117140-29117159 | Msa0637480:CDS | 35.0% |
| !! | AAACCCTCATTTTGTTTGTG+AGG | - | chr4_3:29117163-29117182 | Msa0637480:CDS | 35.0% |
| ! | AGTACTTGTTAAGCCTTACA+AGG | - | chr4_3:29117190-29117209 | Msa0637480:CDS | 35.0% |
| ! | ATTTTACCCTTCTCCTTGTA+AGG | + | chr4_3:29117206-29117225 | None:intergenic | 35.0% |
| GGTGCAATAACTTACTTATC+TGG | + | chr4_3:29117230-29117249 | None:intergenic | 35.0% | |
| ACTGTCAAACACATAAGAGA+AGG | + | chr4_3:29117251-29117270 | None:intergenic | 35.0% | |
| TGACAGTTGACACTAACAAT+TGG | - | chr4_3:29117264-29117283 | Msa0637480:intron | 35.0% | |
| ! | TTGGCTTGATGATATTGACT+TGG | - | chr4_3:29117306-29117325 | Msa0637480:intron | 35.0% |
| !! | TGGCTTGATGATATTGACTT+GGG | - | chr4_3:29117307-29117326 | Msa0637480:intron | 35.0% |
| TATGCTCATCATGATTCATG+TGG | - | chr4_3:29117504-29117523 | Msa0637480:intron | 35.0% | |
| GACCAATATGATCTTCAACT+TGG | - | chr4_3:29117603-29117622 | Msa0637480:intron | 35.0% | |
| TACATCACATGTTAAGAGGT+AGG | + | chr4_3:29117674-29117693 | None:intergenic | 35.0% | |
| ATTCAACGTAGGAGGTTAAT+GGG | - | chr4_3:29117793-29117812 | Msa0637480:CDS | 35.0% | |
| AACATGTTAGGAGATTGAGT+AGG | + | chr4_3:29117886-29117905 | None:intergenic | 35.0% | |
| AGATTCTGATCGAACATGTT+AGG | + | chr4_3:29117898-29117917 | None:intergenic | 35.0% | |
| CAATCAGTCAATGGTTATGT+TGG | - | chr4_3:29118139-29118158 | Msa0637480:CDS | 35.0% | |
| !! | AGGAGCTTAATTTGCATGAA+TGG | - | chr4_3:29118239-29118258 | Msa0637480:intron | 35.0% |
| ! | GAATAAATGCAGTTTGGAGT+TGG | - | chr4_3:29118469-29118488 | Msa0637480:CDS | 35.0% |
| TCTAATGGTCCATTAGAGAA+GGG | + | chr4_3:29118557-29118576 | None:intergenic | 35.0% | |
| TCTGAATCAATGGTCTCTAA+TGG | + | chr4_3:29118572-29118591 | None:intergenic | 35.0% | |
| AGTAGATGCATCTGAATCAA+TGG | + | chr4_3:29118582-29118601 | None:intergenic | 35.0% | |
| !! | GCATCTACTAGCTCTAAATT+TGG | - | chr4_3:29118593-29118612 | Msa0637480:CDS | 35.0% |
| ATATCAAGAGAAGCTGAAGT+TGG | + | chr4_3:29118635-29118654 | None:intergenic | 35.0% | |
| AACTTCAGCTTCTCTTGATA+TGG | - | chr4_3:29118634-29118653 | Msa0637480:CDS | 35.0% | |
| ACTTCAGCTTCTCTTGATAT+GGG | - | chr4_3:29118635-29118654 | Msa0637480:CDS | 35.0% | |
| GGTGATGAAATTCATGTGAA+TGG | + | chr4_3:29118721-29118740 | None:intergenic | 35.0% | |
| !!! | ATTTAGTTTTCCTGAGGTTC+AGG | - | chr4_3:29118853-29118872 | Msa0637480:CDS | 35.0% |
| TTATAGAGACACTAGACTGA+GGG | + | chr4_3:29118918-29118937 | None:intergenic | 35.0% | |
| TTTATAGAGACACTAGACTG+AGG | + | chr4_3:29118919-29118938 | None:intergenic | 35.0% | |
| TATATGAAGGAAATGGCTTG+AGG | - | chr4_3:29119151-29119170 | Msa0637480:CDS | 35.0% | |
| ATATGAAGGAAATGGCTTGA+GGG | - | chr4_3:29119152-29119171 | Msa0637480:CDS | 35.0% | |
| ACGTTGTGTTCAATCATTAC+AGG | - | chr4_3:29119243-29119262 | Msa0637480:five_prime_UTR | 35.0% | |
| !! | GTATTGATGATTGATGGTGA+TGG | + | chr4_3:29119358-29119377 | None:intergenic | 35.0% |
| GAAATTATGGTACCTGTGAA+AGG | + | chr4_3:29119557-29119576 | None:intergenic | 35.0% | |
| !!! | TATGTGCATGCTTTTTCTCT+AGG | + | chr4_3:29119610-29119629 | None:intergenic | 35.0% |
| ! | AAAAGCATGCACATATGAAG+TGG | - | chr4_3:29119615-29119634 | Msa0637480:intron | 35.0% |
| AGAAAAAGGAGATGGGAAGT+AGG | + | chr4_3:29115567-29115586 | None:intergenic | 40.0% | |
| TGGTAGGTAGGGTTTATTTG+TGG | - | chr4_3:29115661-29115680 | Msa0637480:intron | 40.0% | |
| GGTGGAGAGTTATTAGAACA+AGG | + | chr4_3:29115987-29116006 | None:intergenic | 40.0% | |
| ! | AAATTAGGTGAAGGTGATGG+AGG | + | chr4_3:29116023-29116042 | None:intergenic | 40.0% |
| AGGAAATTAGGTGAAGGTGA+TGG | + | chr4_3:29116026-29116045 | None:intergenic | 40.0% | |
| ACTTCTTCAAGGCTTAGTAC+TGG | - | chr4_3:29116065-29116084 | Msa0637480:intron | 40.0% | |
| TAGTAGTAGCTACCCAAGAA+GGG | + | chr4_3:29116124-29116143 | None:intergenic | 40.0% | |
| ATAGTAGTAGCTACCCAAGA+AGG | + | chr4_3:29116125-29116144 | None:intergenic | 40.0% | |
| CACCAACAACCAAATCATCA+TGG | + | chr4_3:29116172-29116191 | None:intergenic | 40.0% | |
| !! | CATGATGATTTGGTTGTTGG+TGG | - | chr4_3:29116170-29116189 | Msa0637480:intron | 40.0% |
| !! | AAGAAAGTTGGTCTTGGAGT+TGG | + | chr4_3:29116217-29116236 | None:intergenic | 40.0% |
| !! | GATGGTTCTGATCCTTCATA+TGG | - | chr4_3:29116245-29116264 | Msa0637480:intron | 40.0% |
| GTTCTGATCCTTCATATGGT+TGG | - | chr4_3:29116249-29116268 | Msa0637480:intron | 40.0% | |
| TCTGATCCTTCATATGGTTG+GGG | - | chr4_3:29116251-29116270 | Msa0637480:intron | 40.0% | |
| !! | GCAAGAGGGTACTGTAAAAA+TGG | - | chr4_3:29116383-29116402 | Msa0637480:CDS | 40.0% |
| TGAGCAAAGGAAAGAGTTAG+AGG | + | chr4_3:29116585-29116604 | None:intergenic | 40.0% | |
| TCTTTCCTTTGCTCACCAAA+AGG | - | chr4_3:29116590-29116609 | Msa0637480:intron | 40.0% | |
| ! | TGCAGCTCTAATGATGAATG+AGG | - | chr4_3:29116775-29116794 | Msa0637480:CDS | 40.0% |
| GCTGGATTAATCATTCCAGT+AGG | + | chr4_3:29116857-29116876 | None:intergenic | 40.0% | |
| !! | CTCTGAAAGTACTATCAGCT+GGG | + | chr4_3:29116904-29116923 | None:intergenic | 40.0% |
| !! | TCTCTGAAAGTACTATCAGC+TGG | + | chr4_3:29116905-29116924 | None:intergenic | 40.0% |
| AGCTGATAGTACTTTCAGAG+AGG | - | chr4_3:29116904-29116923 | Msa0637480:intron | 40.0% | |
| ! | CTGAATACTGACTGCATTGT+TGG | - | chr4_3:29116972-29116991 | Msa0637480:intron | 40.0% |
| ! | TGTTTTTCCAGAGACAGTGA+AGG | - | chr4_3:29117124-29117143 | Msa0637480:CDS | 40.0% |
| AAAATGTCCTTCACTGTCTC+TGG | + | chr4_3:29117134-29117153 | None:intergenic | 40.0% | |
| GAGCCTCACAAACAAAATGA+GGG | + | chr4_3:29117169-29117188 | None:intergenic | 40.0% | |
| TGTTAAGCCTTACAAGGAGA+AGG | - | chr4_3:29117196-29117215 | Msa0637480:CDS | 40.0% | |
| GTTAAGCCTTACAAGGAGAA+GGG | - | chr4_3:29117197-29117216 | Msa0637480:CDS | 40.0% | |
| ACAACACTGAAGACATGTTG+TGG | - | chr4_3:29117728-29117747 | Msa0637480:intron | 40.0% | |
| AAGCTCTTGAGATTCAACGT+AGG | - | chr4_3:29117782-29117801 | Msa0637480:CDS | 40.0% | |
| GATTCAACGTAGGAGGTTAA+TGG | - | chr4_3:29117792-29117811 | Msa0637480:CDS | 40.0% | |
| TTCAACGTAGGAGGTTAATG+GGG | - | chr4_3:29117794-29117813 | Msa0637480:CDS | 40.0% | |
| AGGAGAATGAACTAGACTTC+CGG | + | chr4_3:29117866-29117885 | None:intergenic | 40.0% | |
| !! | AGTAATGCTTCTGTTTCTGC+TGG | - | chr4_3:29118112-29118131 | Msa0637480:CDS | 40.0% |
| AGTCAATGGTTATGTTGGCA+AGG | - | chr4_3:29118144-29118163 | Msa0637480:CDS | 40.0% | |
| ! | TTATGTTGGCAAGGAAGTGT+TGG | - | chr4_3:29118153-29118172 | Msa0637480:CDS | 40.0% |
| ! | GTGTTGGTCAATAGTGAGAA+TGG | - | chr4_3:29118169-29118188 | Msa0637480:CDS | 40.0% |
| GACAAGCTCAAATCATGAAG+AGG | - | chr4_3:29118219-29118238 | Msa0637480:intron | 40.0% | |
| ! | CTTTTGTAGGGGAAGCAAAA+GGG | + | chr4_3:29118514-29118533 | None:intergenic | 40.0% |
| ! | AGTCTCCAACAGCTTTTGTA+GGG | + | chr4_3:29118526-29118545 | None:intergenic | 40.0% |
| ! | AAGTCTCCAACAGCTTTTGT+AGG | + | chr4_3:29118527-29118546 | None:intergenic | 40.0% |
| AAAGCTGTTGGAGACTTAGT+AGG | - | chr4_3:29118530-29118549 | Msa0637480:CDS | 40.0% | |
| TTAGTAGGTCCCTTCTCTAA+TGG | - | chr4_3:29118545-29118564 | Msa0637480:CDS | 40.0% | |
| CTCTAATGGTCCATTAGAGA+AGG | + | chr4_3:29118558-29118577 | None:intergenic | 40.0% | |
| ! | CTTAGGTTTTCTTCTAGCCA+TGG | - | chr4_3:29118790-29118809 | Msa0637480:CDS | 40.0% |
| TCTTCTAGCCATGGAACTAT+TGG | - | chr4_3:29118799-29118818 | Msa0637480:CDS | 40.0% | |
| CTTCTAGCCATGGAACTATT+GGG | - | chr4_3:29118800-29118819 | Msa0637480:CDS | 40.0% | |
| CAAACATCCCAATAGTTCCA+TGG | + | chr4_3:29118810-29118829 | None:intergenic | 40.0% | |
| CAGGAAAACTAAATGCCGAT+CGG | + | chr4_3:29118847-29118866 | None:intergenic | 40.0% | |
| !!! | ATCGGCATTTAGTTTTCCTG+AGG | - | chr4_3:29118847-29118866 | Msa0637480:CDS | 40.0% |
| GCGTATGCTTAGTATTTCAC+TGG | - | chr4_3:29118954-29118973 | Msa0637480:CDS | 40.0% | |
| !! | ATGATTGATGGTGATGGTGT+TGG | + | chr4_3:29119352-29119371 | None:intergenic | 40.0% |
| AGCAGTTTCAGTAAAGGAAG+TGG | - | chr4_3:29119416-29119435 | Msa0637480:intron | 40.0% | |
| GCAGTTTCAGTAAAGGAAGT+GGG | - | chr4_3:29119417-29119436 | Msa0637480:intron | 40.0% | |
| CAGTTTCAGTAAAGGAAGTG+GGG | - | chr4_3:29119418-29119437 | Msa0637480:intron | 40.0% | |
| ! | TTTCAAGTCCTTTGTACAGC+TGG | - | chr4_3:29119573-29119592 | Msa0637480:intron | 40.0% |
| ATAATGCTCCAGCTGTACAA+AGG | + | chr4_3:29119584-29119603 | None:intergenic | 40.0% | |
| AAGCTCACAATAGTAGCAAG+AGG | + | chr4_3:29119869-29119888 | None:intergenic | 40.0% | |
| GATGGGGCAGTATAAGTGAA+TGG | - | chr4_3:29115165-29115184 | Msa0637480:three_prime_UTR | 45.0% | |
| ACTGCTCCTTCTGCAAAACA+AGG | - | chr4_3:29115195-29115214 | Msa0637480:three_prime_UTR | 45.0% | |
| ! | TTTGGGATGGTTAGAGAAGG+TGG | + | chr4_3:29116101-29116120 | None:intergenic | 45.0% |
| TAACCATCCCAAACCCTTCT+TGG | - | chr4_3:29116108-29116127 | Msa0637480:exon | 45.0% | |
| AACCATCCCAAACCCTTCTT+GGG | - | chr4_3:29116109-29116128 | Msa0637480:exon | 45.0% | |
| TAGCTACCCAAGAAGGGTTT+GGG | + | chr4_3:29116118-29116137 | None:intergenic | 45.0% | |
| TTACCTCCCCAACCATATGA+AGG | + | chr4_3:29116260-29116279 | None:intergenic | 45.0% | |
| !! | AGGATCCAAGTGCTGGTTTA+GGG | - | chr4_3:29116339-29116358 | Msa0637480:CDS | 45.0% |
| ! | TCATGCCTTTTGGTGAGCAA+AGG | + | chr4_3:29116598-29116617 | None:intergenic | 45.0% |
| TTGGTCCTGTTCAAGATGTG+AGG | - | chr4_3:29117060-29117079 | Msa0637480:CDS | 45.0% | |
| GGAATCCTCACATCTTGAAC+AGG | + | chr4_3:29117068-29117087 | None:intergenic | 45.0% | |
| AACATACGCTTCTGCTGGTA+TGG | + | chr4_3:29117089-29117108 | None:intergenic | 45.0% | |
| ! | TACCAGCAGAAGCGTATGTT+TGG | - | chr4_3:29117089-29117108 | Msa0637480:CDS | 45.0% |
| CGAGCCTCACAAACAAAATG+AGG | + | chr4_3:29117170-29117189 | None:intergenic | 45.0% | |
| ATCATCAAGCCAACCCAAGT+GGG | + | chr4_3:29117299-29117318 | None:intergenic | 45.0% | |
| TATCATCAAGCCAACCCAAG+TGG | + | chr4_3:29117300-29117319 | None:intergenic | 45.0% | |
| !! | TGATATTGACTTGGGACCTG+AGG | - | chr4_3:29117315-29117334 | Msa0637480:intron | 45.0% |
| !! | GATATTGACTTGGGACCTGA+GGG | - | chr4_3:29117316-29117335 | Msa0637480:intron | 45.0% |
| TACGAAGCACGACACAAACA+CGG | + | chr4_3:29117431-29117450 | None:intergenic | 45.0% | |
| CTAGCATCAACAAGTCCAGT+TGG | + | chr4_3:29117582-29117601 | None:intergenic | 45.0% | |
| ACACTGAAGACATGTTGTGG+AGG | - | chr4_3:29117731-29117750 | Msa0637480:intron | 45.0% | |
| CTCTTGAGATTCAACGTAGG+AGG | - | chr4_3:29117785-29117804 | Msa0637480:CDS | 45.0% | |
| AGAATGAACTAGACTTCCGG+TGG | + | chr4_3:29117863-29117882 | None:intergenic | 45.0% | |
| AACTCAGAGCTTCTGCGAAA+AGG | + | chr4_3:29117928-29117947 | None:intergenic | 45.0% | |
| !! | AGAAGCTCTGAGTTCTCAGA+GGG | - | chr4_3:29117934-29117953 | Msa0637480:intron | 45.0% |
| GCTGGTCAACAATCAGTCAA+TGG | - | chr4_3:29118130-29118149 | Msa0637480:CDS | 45.0% | |
| ! | GCTTTTGTAGGGGAAGCAAA+AGG | + | chr4_3:29118515-29118534 | None:intergenic | 45.0% |
| ! | GTCTCCAACAGCTTTTGTAG+GGG | + | chr4_3:29118525-29118544 | None:intergenic | 45.0% |
| ! | GATGGCAGTACCTTGGTAAT+TGG | + | chr4_3:29118685-29118704 | None:intergenic | 45.0% |
| GAAATGTGATGGCAGTACCT+TGG | + | chr4_3:29118692-29118711 | None:intergenic | 45.0% | |
| GGAACTATTGGGATGTTTGC+CGG | - | chr4_3:29118811-29118830 | Msa0637480:CDS | 45.0% | |
| GTGTATCTTTGGTATCACCG+TGG | + | chr4_3:29119001-29119020 | None:intergenic | 45.0% | |
| TAGGAAGTAGCTCCTTTCAC+AGG | - | chr4_3:29119542-29119561 | Msa0637480:intron | 45.0% | |
| !!! | TTTTTTTTTTTTTTGTTTTT+TGG | - | chr4_3:29115370-29115389 | Msa0637480:three_prime_UTR | 5.0% |
| GCTCCTTCTGCAAAACAAGG+CGG | - | chr4_3:29115198-29115217 | Msa0637480:three_prime_UTR | 50.0% | |
| TGCAAAACAAGGCGGTGGTT+TGG | - | chr4_3:29115206-29115225 | Msa0637480:three_prime_UTR | 50.0% | |
| GGAGATGGGAAGTAGGAAAG+TGG | + | chr4_3:29115560-29115579 | None:intergenic | 50.0% | |
| ! | GATGGAGGAGTTGAAGGTGT+TGG | + | chr4_3:29116008-29116027 | None:intergenic | 50.0% |
| !! | GAAGGTGATGGAGGAGTTGA+AGG | + | chr4_3:29116014-29116033 | None:intergenic | 50.0% |
| GGATGGTTAGAGAAGGTGGA+AGG | + | chr4_3:29116097-29116116 | None:intergenic | 50.0% | |
| ! | GGGTTTGGGATGGTTAGAGA+AGG | + | chr4_3:29116104-29116123 | None:intergenic | 50.0% |
| TACCCAAGAAGGGTTTGGGA+TGG | + | chr4_3:29116114-29116133 | None:intergenic | 50.0% | |
| GTAGCTACCCAAGAAGGGTT+TGG | + | chr4_3:29116119-29116138 | None:intergenic | 50.0% | |
| GATCCTTCATATGGTTGGGG+AGG | - | chr4_3:29116254-29116273 | Msa0637480:intron | 50.0% | |
| !! | GAGGATCCAAGTGCTGGTTT+AGG | - | chr4_3:29116338-29116357 | Msa0637480:CDS | 50.0% |
| !! | ATCCAAGTGCTGGTTTAGGG+TGG | - | chr4_3:29116342-29116361 | Msa0637480:CDS | 50.0% |
| TTCCACCCTAAACCAGCACT+TGG | + | chr4_3:29116347-29116366 | None:intergenic | 50.0% | |
| CTGCTGCTGCTGCAATTGTT+GGG | - | chr4_3:29116441-29116460 | Msa0637480:CDS | 50.0% | |
| ! | TGCTGCTGCTTCTCAACTCA+TGG | - | chr4_3:29116559-29116578 | Msa0637480:intron | 50.0% |
| AGCCAAACATACGCTTCTGC+TGG | + | chr4_3:29117094-29117113 | None:intergenic | 50.0% | |
| ! | ATTGGTGTCCGTAACCCACT+TGG | - | chr4_3:29117282-29117301 | Msa0637480:intron | 50.0% |
| ! | TTGGTGTCCGTAACCCACTT+GGG | - | chr4_3:29117283-29117302 | Msa0637480:intron | 50.0% |
| !! | AAGCCAACCCAAGTGGGTTA+CGG | + | chr4_3:29117293-29117312 | None:intergenic | 50.0% |
| AACCTGAGACCTTACAGAGG+AGG | + | chr4_3:29117345-29117364 | None:intergenic | 50.0% | |
| TCGAACCTGAGACCTTACAG+AGG | + | chr4_3:29117348-29117367 | None:intergenic | 50.0% | |
| GTCTCAGGTTCGATTCTCCT+CGG | - | chr4_3:29117355-29117374 | Msa0637480:CDS | 50.0% | |
| CTGAAGACATGTTGTGGAGG+AGG | - | chr4_3:29117734-29117753 | Msa0637480:intron | 50.0% | |
| AGACATGTTGTGGAGGAGGA+AGG | - | chr4_3:29117738-29117757 | Msa0637480:intron | 50.0% | |
| !! | CAGAAGCTCTGAGTTCTCAG+AGG | - | chr4_3:29117933-29117952 | Msa0637480:intron | 50.0% |
| GCTTCCCCTACAAAAGCTGT+TGG | - | chr4_3:29118518-29118537 | Msa0637480:CDS | 50.0% | |
| !! | GATGGTGTTGGCATCTTTGG+TGG | + | chr4_3:29119340-29119359 | None:intergenic | 50.0% |
| !! | GGTGATGGTGTTGGCATCTT+TGG | + | chr4_3:29119343-29119362 | None:intergenic | 50.0% |
| TTCAGTAAAGGAAGTGGGGC+AGG | - | chr4_3:29119422-29119441 | Msa0637480:intron | 50.0% | |
| !!! | CCACCGCCTTGTTTTGCAGA+AGG | + | chr4_3:29115204-29115223 | None:intergenic | 55.0% |
| CCTTCTGCAAAACAAGGCGG+TGG | - | chr4_3:29115201-29115220 | Msa0637480:three_prime_UTR | 55.0% | |
| !! | GGAGGAGTTGAAGGTGTTGG+TGG | + | chr4_3:29116005-29116024 | None:intergenic | 55.0% |
| !! | GGTTCTGAGGATCCAAGTGC+TGG | - | chr4_3:29116332-29116351 | Msa0637480:CDS | 55.0% |
| GCTGCTGCTGCTGCAATTGT+TGG | - | chr4_3:29116440-29116459 | Msa0637480:CDS | 55.0% | |
| TGTCCGTAACCCACTTGGGT+TGG | - | chr4_3:29117287-29117306 | Msa0637480:intron | 55.0% | |
| TTACAGAGGAGGACACCCTC+AGG | + | chr4_3:29117334-29117353 | None:intergenic | 55.0% | |
| !! | TGAGGGTGTCCTCCTCTGTA+AGG | - | chr4_3:29117333-29117352 | Msa0637480:intron | 55.0% |
| GTCCTCCTCTGTAAGGTCTC+AGG | - | chr4_3:29117340-29117359 | Msa0637480:intron | 55.0% | |
| !! | CTCCTCGGTGCCAGTTTAAG+TGG | - | chr4_3:29117370-29117389 | Msa0637480:CDS | 55.0% |
| GTCCACTTAAACTGGCACCG+AGG | + | chr4_3:29117375-29117394 | None:intergenic | 55.0% | |
| TAGGAAGCAGCTTCAGCAGC+AGG | - | chr4_3:29117533-29117552 | Msa0637480:intron | 55.0% | |
| AGGAAGCAGCTTCAGCAGCA+GGG | - | chr4_3:29117534-29117553 | Msa0637480:intron | 55.0% | |
| AGTCCAGTTGGAGTGCGACA+CGG | + | chr4_3:29117570-29117589 | None:intergenic | 55.0% | |
| ! | TGGAAAGTGCGCGTTGGTGT+TGG | + | chr4_3:29117843-29117862 | None:intergenic | 55.0% |
| GGGGAAGCAAAAGGGCTATC+AGG | + | chr4_3:29118506-29118525 | None:intergenic | 55.0% | |
| ATTGGGATGTTTGCCGGCAC+CGG | - | chr4_3:29118817-29118836 | Msa0637480:CDS | 55.0% | |
| CTAAATGCCGATCGGTCCAC+CGG | + | chr4_3:29118839-29118858 | None:intergenic | 55.0% | |
| !! | GGTGTTGGCATCTTTGGTGG+TGG | + | chr4_3:29119337-29119356 | None:intergenic | 55.0% |
| CTCAGTAGTTACTGCCCCAC+AGG | - | chr4_3:29119479-29119498 | Msa0637480:intron | 55.0% | |
| TCACCGTGTCGCACTCCAAC+TGG | - | chr4_3:29117564-29117583 | Msa0637480:intron | 60.0% | |
| CACCAACGCGCACTTTCCAC+CGG | - | chr4_3:29117844-29117863 | Msa0637480:CDS | 60.0% | |
| ! | TTCCGGTGGAAAGTGCGCGT+TGG | + | chr4_3:29117849-29117868 | None:intergenic | 60.0% |
| ! | GGGATGTTTGCCGGCACCGG+TGG | - | chr4_3:29118820-29118839 | Msa0637480:CDS | 70.0% |
| !! | GCCGGCACCGGTGGACCGAT+CGG | - | chr4_3:29118829-29118848 | Msa0637480:CDS | 75.0% |
| GCCGATCGGTCCACCGGTGC+CGG | + | chr4_3:29118833-29118852 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 29115050 | 29119924 | 29115050 | ID=Msa0637480;Name=Msa0637480 |
| chr4_3 | mRNA | 29115050 | 29119924 | 29115050 | ID=Msa0637480-mRNA-1;Parent=Msa0637480;Name=Msa0637480-mRNA-1;_AED=0.10;_eAED=0.09;_QI=476|0.9|0.90|1|0.7|0.54|11|637|688 |
| chr4_3 | exon | 29115050 | 29115660 | 29115050 | ID=Msa0637480-mRNA-1:exon:7186;Parent=Msa0637480-mRNA-1 |
| chr4_3 | exon | 29115700 | 29115709 | 29115700 | ID=Msa0637480-mRNA-1:exon:7185;Parent=Msa0637480-mRNA-1 |
| chr4_3 | exon | 29116100 | 29116179 | 29116100 | ID=Msa0637480-mRNA-1:exon:7184;Parent=Msa0637480-mRNA-1 |
| chr4_3 | exon | 29116281 | 29116493 | 29116281 | ID=Msa0637480-mRNA-1:exon:7183;Parent=Msa0637480-mRNA-1 |
| chr4_3 | exon | 29116714 | 29116891 | 29116714 | ID=Msa0637480-mRNA-1:exon:7182;Parent=Msa0637480-mRNA-1 |
| chr4_3 | exon | 29117019 | 29117261 | 29117019 | ID=Msa0637480-mRNA-1:exon:7181;Parent=Msa0637480-mRNA-1 |
| chr4_3 | exon | 29117350 | 29117489 | 29117350 | ID=Msa0637480-mRNA-1:exon:7180;Parent=Msa0637480-mRNA-1 |
| chr4_3 | exon | 29117740 | 29117919 | 29117740 | ID=Msa0637480-mRNA-1:exon:7179;Parent=Msa0637480-mRNA-1 |
| chr4_3 | exon | 29118026 | 29118208 | 29118026 | ID=Msa0637480-mRNA-1:exon:7178;Parent=Msa0637480-mRNA-1 |
| chr4_3 | exon | 29118314 | 29119349 | 29118314 | ID=Msa0637480-mRNA-1:exon:7177;Parent=Msa0637480-mRNA-1 |
| chr4_3 | exon | 29119619 | 29119924 | 29119619 | ID=Msa0637480-mRNA-1:exon:7176;Parent=Msa0637480-mRNA-1 |
| chr4_3 | five_prime_UTR | 29119619 | 29119924 | 29119619 | ID=Msa0637480-mRNA-1:five_prime_utr;Parent=Msa0637480-mRNA-1 |
| chr4_3 | five_prime_UTR | 29119180 | 29119349 | 29119180 | ID=Msa0637480-mRNA-1:five_prime_utr;Parent=Msa0637480-mRNA-1 |
| chr4_3 | CDS | 29118314 | 29119179 | 29118314 | ID=Msa0637480-mRNA-1:cds;Parent=Msa0637480-mRNA-1 |
| chr4_3 | CDS | 29118026 | 29118208 | 29118026 | ID=Msa0637480-mRNA-1:cds;Parent=Msa0637480-mRNA-1 |
| chr4_3 | CDS | 29117740 | 29117919 | 29117740 | ID=Msa0637480-mRNA-1:cds;Parent=Msa0637480-mRNA-1 |
| chr4_3 | CDS | 29117350 | 29117489 | 29117350 | ID=Msa0637480-mRNA-1:cds;Parent=Msa0637480-mRNA-1 |
| chr4_3 | CDS | 29117019 | 29117261 | 29117019 | ID=Msa0637480-mRNA-1:cds;Parent=Msa0637480-mRNA-1 |
| chr4_3 | CDS | 29116714 | 29116891 | 29116714 | ID=Msa0637480-mRNA-1:cds;Parent=Msa0637480-mRNA-1 |
| chr4_3 | CDS | 29116281 | 29116493 | 29116281 | ID=Msa0637480-mRNA-1:cds;Parent=Msa0637480-mRNA-1 |
| chr4_3 | CDS | 29116116 | 29116179 | 29116116 | ID=Msa0637480-mRNA-1:cds;Parent=Msa0637480-mRNA-1 |
| chr4_3 | three_prime_UTR | 29116100 | 29116115 | 29116100 | ID=Msa0637480-mRNA-1:three_prime_utr;Parent=Msa0637480-mRNA-1 |
| chr4_3 | three_prime_UTR | 29115700 | 29115709 | 29115700 | ID=Msa0637480-mRNA-1:three_prime_utr;Parent=Msa0637480-mRNA-1 |
| chr4_3 | three_prime_UTR | 29115050 | 29115660 | 29115050 | ID=Msa0637480-mRNA-1:three_prime_utr;Parent=Msa0637480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
