AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0542580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0542580 MtrunA17_Chr4g0020571 90.816 686 21 9 1 664 1 666 0.0 1155
Msa0542580 MtrunA17_Chr3g0090551 59.214 738 190 25 1 664 1 701 0.0 712
Msa0542580 MtrunA17_Chr5g0396381 39.045 712 320 23 1 630 1 680 2.53e-120 374
Msa0542580 MtrunA17_Chr5g0445571 31.881 505 268 16 1 458 1 476 2.72e-52 189
Msa0542580 MtrunA17_Chr3g0101151 30.058 519 236 13 1 458 1 453 4.44e-45 168
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0542580 AT3G51950.1 40.584 685 241 27 1 664 1 540 2.37e-119 367
Msa0542580 AT3G51950.3 40.584 685 241 27 1 664 1 540 2.37e-119 367
Msa0542580 AT3G51950.2 40.584 685 241 27 1 664 1 540 2.37e-119 367
Msa0542580 AT3G51950.4 40.584 685 241 27 1 664 1 540 2.37e-119 367
Msa0542580 AT3G21100.2 37.191 648 271 26 1 590 1 570 1.04e-96 310
Msa0542580 AT3G21100.1 37.191 648 271 26 1 590 1 570 1.04e-96 310
Msa0542580 AT3G21100.4 37.134 649 271 26 1 590 1 571 1.73e-96 309
Msa0542580 AT3G21100.3 37.134 649 271 26 1 590 1 571 1.73e-96 309
Msa0542580 AT5G12440.4 42.602 392 155 14 130 473 160 529 2.69e-83 276
Msa0542580 AT5G12440.11 42.602 392 155 14 130 473 160 529 2.69e-83 276
Msa0542580 AT5G12440.12 42.602 392 155 14 130 473 160 529 2.69e-83 276
Msa0542580 AT5G12440.7 42.602 392 155 14 130 473 160 529 2.69e-83 276
Msa0542580 AT5G12440.1 42.602 392 155 14 130 473 160 529 2.69e-83 276
Msa0542580 AT5G12440.9 42.602 392 155 14 130 473 160 529 2.69e-83 276
Msa0542580 AT5G12440.2 42.602 392 155 14 130 473 160 529 2.69e-83 276
Msa0542580 AT5G12440.3 42.602 392 155 14 130 473 191 560 7.63e-83 275
Msa0542580 AT5G12440.10 42.602 392 155 14 130 473 191 560 7.63e-83 275
Msa0542580 AT5G12440.8 42.602 392 155 14 130 473 191 560 7.63e-83 275
Msa0542580 AT5G12440.5 42.602 392 155 14 130 473 191 560 7.63e-83 275
Msa0542580 AT5G12440.6 42.602 392 155 14 130 473 191 560 7.63e-83 275
Msa0542580 AT3G63450.2 48.846 260 90 10 233 488 86 306 2.18e-60 207
Msa0542580 AT3G63450.2 61.111 72 28 0 1 72 1 72 2.61e-19 91.3
Msa0542580 AT3G63450.1 48.846 260 90 10 233 488 86 306 2.18e-60 207
Msa0542580 AT3G63450.1 61.111 72 28 0 1 72 1 72 2.61e-19 91.3
Msa0542580 AT3G63450.3 48.473 262 90 10 233 488 86 308 2.89e-59 205
Msa0542580 AT3G63450.3 61.111 72 28 0 1 72 1 72 2.49e-19 91.3
Msa0542580 AT3G63450.4 48.473 262 90 10 233 488 86 308 2.89e-59 205
Msa0542580 AT3G63450.4 61.111 72 28 0 1 72 1 72 2.49e-19 91.3
Msa0542580 AT3G63450.5 48.473 262 90 10 233 488 86 308 2.89e-59 205
Msa0542580 AT3G63450.5 61.111 72 28 0 1 72 1 72 2.49e-19 91.3
Msa0542580 AT3G63450.6 54.187 203 68 6 290 488 17 198 1.15e-58 199
Msa0542580 AT3G63450.7 49.231 260 91 11 233 488 86 308 1.25e-58 202
Msa0542580 AT3G63450.7 61.111 72 28 0 1 72 1 72 1.55e-19 91.7
Msa0542580 AT1G51520.1 31.875 480 233 20 1 452 1 414 1.30e-50 181
Msa0542580 AT1G51520.2 32.495 477 217 21 1 443 1 406 8.64e-49 179
Msa0542580 AT2G05160.3 32.877 438 198 15 1 394 1 386 1.95e-45 169
Msa0542580 AT2G05160.2 32.648 438 199 15 1 394 1 386 2.63e-45 169
Msa0542580 AT2G05160.1 32.648 438 199 15 1 394 1 386 2.63e-45 169
Msa0542580 AT3G52980.1 33.580 405 205 16 1 383 1 363 3.85e-40 151
Msa0542580 AT1G51530.2 38.365 159 77 7 336 480 185 336 8.33e-17 83.6
Msa0542580 AT1G51530.1 38.356 146 69 7 349 480 186 324 2.44e-13 72.8

Find 180 sgRNAs with CRISPR-Local

Find 583 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAACACAATGGCTTATT+TGG 0.135566 4_1:-27670626 None:intergenic
AACTTCAGCTTCTCTTGATA+TGG 0.183404 4_1:+27679817 Msa0542580:CDS
AAAGGGACTTTGTATTTAAA+TGG 0.198166 4_1:+27679624 Msa0542580:intron
AATGAGGAGTTGCACAAATT+TGG 0.207039 4_1:+27678021 Msa0542580:CDS
TATCCTTTCATTTCATATAT+TGG 0.224654 4_1:+27670697 Msa0542580:five_prime_UTR
GGTGATGGTGTTGGCATCTT+TGG 0.252432 4_1:-27680524 None:intergenic
GGTAATTGGCAGTTATTATA+TGG 0.254267 4_1:-27679851 None:intergenic
ATATATTGGATTAAGAAATA+TGG 0.257306 4_1:+27670711 Msa0542580:five_prime_UTR
AAAAGGAAATTCATGCCTTT+TGG 0.282854 4_1:-27677843 None:intergenic
TTCTGATCCTTCATATGGTT+GGG 0.287354 4_1:+27677497 Msa0542580:CDS
CACACAAAGGTATTATTATT+AGG 0.288861 4_1:+27680710 Msa0542580:three_prime_UTR
CTTCATAACCATCCATGATT+TGG 0.292152 4_1:-27677035 None:intergenic
AAGATGTTTCTGAATACTTC+AGG 0.299213 4_1:+27678157 Msa0542580:CDS
AAAGAAACTTTACTTGTAAT+AGG 0.300194 4_1:+27676931 Msa0542580:five_prime_UTR
GTTTCAAAACCATGATGATT+TGG 0.301307 4_1:+27677407 Msa0542580:CDS
TAACCATCCCAAACCCTTCT+TGG 0.303956 4_1:+27677355 Msa0542580:CDS
TCTTCTGCCCATGGAACTAT+TGG 0.306365 4_1:+27679982 Msa0542580:CDS
GATTCAACGTAGGAGGTTAA+TGG 0.322041 4_1:+27678971 Msa0542580:CDS
GATGCTTCTGCTGCAATTGT+TGG 0.328859 4_1:+27677678 Msa0542580:CDS
AACAGTGAAAGTAATGAAAA+TGG 0.332411 4_1:+27679372 Msa0542580:CDS
GTACAAAGGACTTGAAATTA+TGG 0.336774 4_1:-27680754 None:intergenic
GAGGATCCAAGTGCTGGTTT+AGG 0.351353 4_1:+27677585 Msa0542580:CDS
ACATCTACTAGCTCTAAATT+TGG 0.353969 4_1:+27679776 Msa0542580:CDS
GGAACTATTGGGATGTTTGC+CGG 0.357443 4_1:+27679994 Msa0542580:CDS
AATGATGCTTCTTATTTAGC+TGG 0.358770 4_1:+27677558 Msa0542580:CDS
CAACTTTCTTTCTTGAATGA+TGG 0.364655 4_1:+27677474 Msa0542580:CDS
TGGGAGAGAGAAGAAAATAT+TGG 0.365756 4_1:+27670452 Msa0542580:five_prime_UTR
CTTCACCTAATTTCCTTTCA+AGG 0.369048 4_1:+27677277 Msa0542580:CDS
CTTCTGCCCATGGAACTATT+GGG 0.370221 4_1:+27679983 Msa0542580:CDS
ACTAGTTGTAGGTTTCTTCA+TGG 0.371986 4_1:+27677654 Msa0542580:CDS
AAAATGTCCTTCACTGTCTC+TGG 0.372778 4_1:-27678349 None:intergenic
ATTCAACGTAGGAGGTTAAT+GGG 0.383287 4_1:+27678972 Msa0542580:CDS
GGTGAAGCAAAAGGGCTATC+AGG 0.385669 4_1:-27679686 None:intergenic
TTCAAAGCTAGAAAAGAGTT+AGG 0.388218 4_1:+27677204 Msa0542580:CDS
TCACCGTGTCGCACTCCAAC+TGG 0.388538 4_1:+27678743 Msa0542580:CDS
TTAGTAGGTCCCTTCTCTAA+TGG 0.390520 4_1:+27679728 Msa0542580:CDS
GTTAATGAATAAACGCAGTT+TGG 0.393191 4_1:+27679646 Msa0542580:CDS
ATTGTGTTTGTTTGTTTAAG+TGG 0.393553 4_1:+27670637 Msa0542580:five_prime_UTR
TTTCAAGTCCTTTGTACAGC+TGG 0.394869 4_1:+27680760 Msa0542580:three_prime_UTR
TGCAAAACAAGGCGGTGGTT+TGG 0.397401 4_1:+27670583 Msa0542580:five_prime_UTR
AAAATTCATCAACTTCTTCA+AGG 0.400418 4_1:+27677301 Msa0542580:CDS
ACTGAATGAATAAGTGATTC+AGG 0.400741 4_1:-27677177 None:intergenic
ATGCTTCTGCTGCAATTGTT+GGG 0.402017 4_1:+27677679 Msa0542580:CDS
TGAAAATGCATCAAATATCA+TGG 0.407202 4_1:+27677098 Msa0542580:CDS
AGATTCTGATCGAACATGTT+AGG 0.417465 4_1:-27679074 None:intergenic
ATCTTCTCATCAACAAAGAT+TGG 0.420103 4_1:+27677764 Msa0542580:CDS
GTTCTGATCCTTCATATGGT+TGG 0.420579 4_1:+27677496 Msa0542580:CDS
TACCAGCAGAAGCGTATGTT+TGG 0.422823 4_1:+27678307 Msa0542580:CDS
AACCATGATGATTTGGTTGT+TGG 0.425653 4_1:+27677414 Msa0542580:CDS
AAGAAAGTTGGTCTTGGAGT+TGG 0.426471 4_1:-27677461 None:intergenic
AAGTAGATTTGTCTTGAAGC+TGG 0.427274 4_1:-27678102 None:intergenic
TCTGAATCAATGGTCTCTAA+TGG 0.428441 4_1:-27679752 None:intergenic
AGGAGCTTAATTTGCATGAA+TGG 0.429817 4_1:+27679418 Msa0542580:CDS
TAGCTACCCAAGAAGGGTTT+GGG 0.430474 4_1:-27677362 None:intergenic
AACATACGCTTCTGCTGGTA+TGG 0.433918 4_1:-27678304 None:intergenic
ACTTCAGCTTCTCTTGATAT+GGG 0.434350 4_1:+27679818 Msa0542580:CDS
GATGGCAGTACCTTGGTAAT+TGG 0.438358 4_1:-27679865 None:intergenic
CTCACAATAGTAGTAGTAAG+AGG 0.439501 4_1:-27681052 None:intergenic
TAGGAAGCAGCTTCAGCAGC+AGG 0.440486 4_1:+27678712 Msa0542580:intron
ATAGTATTATTGATGATTGA+TGG 0.440962 4_1:-27680545 None:intergenic
TCAAGAAAGAAAGTTGGTCT+TGG 0.441160 4_1:-27677467 None:intergenic
ACCGATCGGTCCACCGGTGC+CGG 0.443328 4_1:-27680013 None:intergenic
AACCATCCCAAACCCTTCTT+GGG 0.448617 4_1:+27677356 Msa0542580:CDS
TGGTAGGTAGGGTTTATTTG+TGG 0.451555 4_1:+27676903 Msa0542580:five_prime_UTR
TGGAGTTGGAAATCATCAAT+TGG 0.455092 4_1:-27677447 None:intergenic
TGCTGCTGCTTCTCAACTCA+TGG 0.455822 4_1:+27677797 Msa0542580:CDS
CAATCAGTCAATGGTTATGT+TGG 0.459178 4_1:+27679318 Msa0542580:CDS
AGTAATGCTTCTGTTTCTGC+TGG 0.461227 4_1:+27679291 Msa0542580:CDS
GATGGTGTTGGCATCTTTGG+TGG 0.461897 4_1:-27680521 None:intergenic
GTAGCTACCCAAGAAGGGTT+TGG 0.462332 4_1:-27677363 None:intergenic
TGCACAAATTTGGAAGATCA+AGG 0.462736 4_1:+27678031 Msa0542580:CDS
AACTCGGAGCTTCTGCGAAA+AGG 0.462826 4_1:-27679104 None:intergenic
GAATAAACGCAGTTTGGAGT+TGG 0.464190 4_1:+27679652 Msa0542580:CDS
TTTGGGATGGTTAGAGAAGG+TGG 0.466291 4_1:-27677345 None:intergenic
GATGGTTCTGATCCTTCATA+TGG 0.468864 4_1:+27677492 Msa0542580:CDS
GGGATGTTTGCCGGCACCGG+TGG 0.476292 4_1:+27680003 Msa0542580:CDS
GAAGGTGATGGAGGAGTTGA+AGG 0.476556 4_1:-27677258 None:intergenic
GAGGTAATTCTTCTCTTCAT+AGG 0.476864 4_1:+27677520 Msa0542580:CDS
AGGAGAATGAACTAGACTTC+CGG 0.481899 4_1:-27679042 None:intergenic
GAAAATATTGGATATAGAAA+CGG 0.482183 4_1:+27670464 Msa0542580:five_prime_UTR
CATGATGATTTGGTTGTTGG+TGG 0.482251 4_1:+27677417 Msa0542580:CDS
TCTCTGAAAGTACTATCAGC+TGG 0.483478 4_1:-27678132 None:intergenic
TCTGATCCTTCATATGGTTG+GGG 0.483566 4_1:+27677498 Msa0542580:CDS
GGAATCCTCACATCTTGAAC+AGG 0.483680 4_1:-27678283 None:intergenic
CTCAGTAGTTACTGCCCCAC+AGG 0.484969 4_1:+27680666 Msa0542580:three_prime_UTR
TCTTTCCTTTGCTCACCAAA+AGG 0.487823 4_1:+27677828 Msa0542580:CDS
ATTGGGATGTTTGCCGGCAC+CGG 0.489063 4_1:+27680000 Msa0542580:CDS
CGAGCCTCGCAAACAAAATG+AGG 0.489324 4_1:-27678385 None:intergenic
TGGAAAGTGCGCGTTGGTGT+TGG 0.491134 4_1:-27679019 None:intergenic
TAACAAGATTGAAAATATGA+TGG 0.492689 4_1:+27677707 Msa0542580:CDS
TTCAGTAAAGGAAGTGGGGC+AGG 0.493411 4_1:+27680609 Msa0542580:three_prime_UTR
AGTAGATTTGTCTTGAAGCT+GGG 0.493765 4_1:-27678101 None:intergenic
GGTTCTGAGGATCCAAGTGC+TGG 0.496209 4_1:+27677579 Msa0542580:CDS
TTAATGATTATATGAGTAAG+TGG 0.508052 4_1:+27670432 Msa0542580:five_prime_UTR
AGTAGATGTATCTGAATCAA+TGG 0.508605 4_1:-27679762 None:intergenic
GTGTTGGTCAATAGTGAGAA+TGG 0.514825 4_1:+27679348 Msa0542580:CDS
CAAACATCCCAATAGTTCCA+TGG 0.516522 4_1:-27679990 None:intergenic
GGTGTTGGCATCTTTGGTGG+TGG 0.520609 4_1:-27680518 None:intergenic
ATAAATACCCTCTGAGAACT+CGG 0.525757 4_1:-27679120 None:intergenic
CTCTAATGGTCCATTAGAGA+AGG 0.531820 4_1:-27679738 None:intergenic
GCTTCACCTACAAAAGCTGT+TGG 0.533658 4_1:+27679701 Msa0542580:CDS
CTAGATACCGATCGGTCCAC+CGG 0.533926 4_1:-27680019 None:intergenic
TAGGAAGTAGCTCCTTTCAC+AGG 0.535965 4_1:+27680729 Msa0542580:three_prime_UTR
CTCTGAAAGTACTATCAGCT+GGG 0.538342 4_1:-27678131 None:intergenic
CCTTCTGCAAAACAAGGCGG+TGG 0.541998 4_1:+27670578 Msa0542580:five_prime_UTR
TTCTTGAACCAAATCATGGA+TGG 0.542653 4_1:+27677027 Msa0542580:exon
CTCTTGAGATTCAACGTAGG+AGG 0.543490 4_1:+27678964 Msa0542580:CDS
GAAATTATGGTACCTGTGAA+AGG 0.544287 4_1:-27680741 None:intergenic
GGAGGAGTTGAAGGTGTTGG+TGG 0.544429 4_1:-27677249 None:intergenic
GCCGGCACCGGTGGACCGAT+CGG 0.547431 4_1:+27680012 Msa0542580:CDS
ATGATTGATGGTGATGGTGT+TGG 0.548035 4_1:-27680533 None:intergenic
GGATGGTTAGAGAAGGTGGA+AGG 0.550377 4_1:-27677341 None:intergenic
GCAGTTTCAGTAAAGGAAGT+GGG 0.551076 4_1:+27680604 Msa0542580:three_prime_UTR
TTCTTATTTAGCTGGTTCTG+AGG 0.551260 4_1:+27677566 Msa0542580:CDS
CTGAAGACATGTTGTGGAGG+AGG 0.552660 4_1:+27678913 Msa0542580:CDS
AGCCAAACATACGCTTCTGC+TGG 0.552768 4_1:-27678309 None:intergenic
AAAGCTGTTGGAGACTTAGT+AGG 0.552915 4_1:+27679713 Msa0542580:CDS
CATCATTCAAGAAAGAAAGT+TGG 0.553431 4_1:-27677473 None:intergenic
ATCCAAGTGCTGGTTTAGGA+TGG 0.555461 4_1:+27677589 Msa0542580:CDS
CACCAACGCGCACTTTCCAC+CGG 0.557494 4_1:+27679023 Msa0542580:CDS
AAATTAGGTGAAGGTGATGG+AGG 0.557722 4_1:-27677267 None:intergenic
GCTGGTCAACAATCAGTCAA+TGG 0.558529 4_1:+27679309 Msa0542580:CDS
CTGAAACATAATATTATCAA+AGG 0.559533 4_1:-27680951 None:intergenic
AGCAGTTTCAGTAAAGGAAG+TGG 0.564046 4_1:+27680603 Msa0542580:three_prime_UTR
ATAGTAGTAGCTACCCAAGA+AGG 0.564731 4_1:-27677369 None:intergenic
GAAAATGCATCAAATATCAT+GGG 0.565223 4_1:+27677099 Msa0542580:CDS
TACCAAGTTGAAGATCATAC+TGG 0.565581 4_1:-27678784 None:intergenic
GACCAGTATGATCTTCAACT+TGG 0.566045 4_1:+27678782 Msa0542580:CDS
GATGGAGGAGTTGAAGGTGT+TGG 0.569843 4_1:-27677252 None:intergenic
GATGGGGCAGTATAAGTGAA+TGG 0.570987 4_1:+27670542 Msa0542580:five_prime_UTR
TTGGTCCTGTTCAAGATGTG+AGG 0.573377 4_1:+27678278 Msa0542580:CDS
AAAAGCATGCACATATGAAG+TGG 0.573833 4_1:+27680801 Msa0542580:three_prime_UTR
TTACCTCCCCAACCATATGA+AGG 0.573835 4_1:-27677504 None:intergenic
AATCCAATATATGAAATGAA+AGG 0.574818 4_1:-27670700 None:intergenic
TAATGATTATATGAGTAAGT+GGG 0.574967 4_1:+27670433 Msa0542580:five_prime_UTR
CTAGCATCAACAAGTCCAGT+TGG 0.578010 4_1:-27678758 None:intergenic
AGTCAATGGTTATGTTGGCA+AGG 0.578685 4_1:+27679323 Msa0542580:CDS
AGACATGTTGTGGAGGAGGA+AGG 0.581194 4_1:+27678917 Msa0542580:CDS
AAACATCCCAATAGTTCCAT+GGG 0.583735 4_1:-27679989 None:intergenic
CAGAAGCTCCGAGTTCTCAG+AGG 0.583919 4_1:+27679112 Msa0542580:CDS
GGTGGAGAGTTATTAGAACA+AGG 0.584556 4_1:-27677231 None:intergenic
GACAAGCTCAAATCATGAAG+AGG 0.585776 4_1:+27679398 Msa0542580:CDS
GGGTTTGGGATGGTTAGAGA+AGG 0.586472 4_1:-27677348 None:intergenic
ATATCAAGAGAAGCTGAAGT+TGG 0.586830 4_1:-27679815 None:intergenic
CACCAACAACCAAATCATCA+TGG 0.590260 4_1:-27677416 None:intergenic
TTCCATCCTAAACCAGCACT+TGG 0.596178 4_1:-27677591 None:intergenic
ATAACACTGAAGACATGTTG+TGG 0.597721 4_1:+27678907 Msa0542580:CDS
AAAATCAAAATGATACTCAA+AGG 0.597880 4_1:+27677877 Msa0542580:CDS
TTGCTTCTTAGTAAAGAGCA+TGG 0.599243 4_1:+27677123 Msa0542580:CDS
CCTCTTGCAAAATAAAGACA+TGG 0.600057 4_1:-27677615 None:intergenic
GATCCTTCATATGGTTGGGG+AGG 0.600288 4_1:+27677501 Msa0542580:CDS
ACTTCTTCAAGGCTTAGTAG+TGG 0.602060 4_1:+27677312 Msa0542580:CDS
TTCCGGTGGAAAGTGCGCGT+TGG 0.604828 4_1:-27679025 None:intergenic
TGCAGCTTTAATGATGAATG+AGG 0.607606 4_1:+27678005 Msa0542580:CDS
AGGAAATTAGGTGAAGGTGA+TGG 0.608102 4_1:-27677270 None:intergenic
CTTGAAAGGAAATTAGGTGA+AGG 0.619146 4_1:-27677276 None:intergenic
TACCCAAGAAGGGTTTGGGA+TGG 0.619888 4_1:-27677358 None:intergenic
TGGTTATGAAGCAACTAAGA+TGG 0.623405 4_1:+27677047 Msa0542580:CDS
AGGAAGCAGCTTCAGCAGCA+GGG 0.623572 4_1:+27678713 Msa0542580:intron
ATAATGCTCCAGCTGTACAA+AGG 0.623606 4_1:-27680768 None:intergenic
ACTTAAACAAACAAACACAA+TGG 0.624737 4_1:-27670635 None:intergenic
AGAAGCTCCGAGTTCTCAGA+GGG 0.629776 4_1:+27679113 Msa0542580:CDS
TCTAATGGTCCATTAGAGAA+GGG 0.630191 4_1:-27679737 None:intergenic
TTATGTTGGCAAGGAAGTGT+TGG 0.631890 4_1:+27679332 Msa0542580:CDS
TAGTAGTAGCTACCCAAGAA+GGG 0.633677 4_1:-27677368 None:intergenic
ACTGCTCCTTCTGCAAAACA+AGG 0.635900 4_1:+27670572 Msa0542580:five_prime_UTR
CAGTTTCAGTAAAGGAAGTG+GGG 0.640959 4_1:+27680605 Msa0542580:three_prime_UTR
TTATTGATGATTGATGGTGA+TGG 0.650229 4_1:-27680539 None:intergenic
GAGCCTCGCAAACAAAATGA+GGG 0.652832 4_1:-27678384 None:intergenic
ATAATAACTGCCAATTACCA+AGG 0.653801 4_1:+27679855 Msa0542580:CDS
CAGGAAAACTAGATACCGAT+CGG 0.653946 4_1:-27680027 None:intergenic
GCTGGGTTAATCATTCCAGT+AGG 0.658453 4_1:-27678084 None:intergenic
AGTCCAGTTGGAGTGCGACA+CGG 0.665479 4_1:-27678746 None:intergenic
AGAATGAACTAGACTTCCGG+TGG 0.670680 4_1:-27679039 None:intergenic
ACACTGAAGACATGTTGTGG+AGG 0.682283 4_1:+27678910 Msa0542580:CDS
TTCAACGTAGGAGGTTAATG+GGG 0.699821 4_1:+27678973 Msa0542580:CDS
AGCTGATAGTACTTTCAGAG+AGG 0.701721 4_1:+27678134 Msa0542580:CDS
GCTCCTTCTGCAAAACAAGG+CGG 0.720204 4_1:+27670575 Msa0542580:five_prime_UTR
AACATGTTAGGAGATTGAGT+AGG 0.740499 4_1:-27679062 None:intergenic
AAGCTCTTGAGATTCAACGT+AGG 0.757112 4_1:+27678961 Msa0542580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTTT+TGG + chr4_1:27670746-27670765 Msa0542580:intron 0.0%
!!! TTTTTTTTTTTTTTTGGTTT+TGG + chr4_1:27670756-27670775 Msa0542580:intron 10.0%
!!! AGTAATAATTAACTTTTAAA+TGG - chr4_1:27670939-27670958 None:intergenic 10.0%
!! GTTAAGAAATAAATAATAAA+TGG - chr4_1:27671057-27671076 None:intergenic 10.0%
!! ATGATAAAATTTATTATACA+CGG - chr4_1:27671349-27671368 None:intergenic 10.0%
!!! TTTAAAATAATTATGATTCA+CGG - chr4_1:27671457-27671476 None:intergenic 10.0%
!!! AAAGTTTTATAAATAACAAT+TGG + chr4_1:27672516-27672535 Msa0542580:intron 10.0%
!!! TATATTATTTAGAATATCAT+TGG - chr4_1:27672877-27672896 None:intergenic 10.0%
!! ATAAAAAAAAAAATTGTTCA+TGG - chr4_1:27673177-27673196 None:intergenic 10.0%
!!! TATTTGATATAATTCTAAAA+TGG + chr4_1:27673255-27673274 Msa0542580:intron 10.0%
!!! ATTTGATATAATTCTAAAAT+GGG + chr4_1:27673256-27673275 Msa0542580:intron 10.0%
!!! TCAATAATAAAATTTTAGAA+GGG - chr4_1:27673460-27673479 None:intergenic 10.0%
!!! TTCAATAATAAAATTTTAGA+AGG - chr4_1:27673461-27673480 None:intergenic 10.0%
!!! TCTTTTTTTTTTTTTAAATG+GGG + chr4_1:27673692-27673711 Msa0542580:intron 10.0%
!! AAAATAAATATATATGCAAA+AGG - chr4_1:27675641-27675660 None:intergenic 10.0%
!!! ATATTTTTGTTTTTCTATTA+AGG + chr4_1:27676977-27676996 Msa0542580:five_prime_UTR 10.0%
!! ATAATAATGTAATAATTACA+GGG + chr4_1:27677975-27677994 Msa0542580:intron 10.0%
!! AAAATTTCAACAAAAATTAT+AGG - chr4_1:27679925-27679944 None:intergenic 10.0%
!!! TATAATTTTTGTTGAAATTT+TGG + chr4_1:27679924-27679943 Msa0542580:intron 10.0%
!! ATATATTGGATTAAGAAATA+TGG + chr4_1:27670711-27670730 Msa0542580:five_prime_UTR 15.0%
!!! TTATTTATTTCTTAACTTGT+CGG + chr4_1:27671061-27671080 Msa0542580:intron 15.0%
!! TCAAAAAAAAAATTATTTGC+AGG + chr4_1:27671116-27671135 Msa0542580:intron 15.0%
!!! GTACAATAATCATTTTTTTA+AGG + chr4_1:27671232-27671251 Msa0542580:intron 15.0%
!! TGATAAAATTTATTATACAC+GGG - chr4_1:27671348-27671367 None:intergenic 15.0%
!! TTAAAATAATTATGATTCAC+GGG - chr4_1:27671456-27671475 None:intergenic 15.0%
!! ACTAAAAAAACTAAAATACA+CGG - chr4_1:27671500-27671519 None:intergenic 15.0%
!! TGCATAATAATTATTTAAAG+AGG + chr4_1:27671591-27671610 Msa0542580:intron 15.0%
!! TCAAAAATAAATCAAATTCA+CGG - chr4_1:27671883-27671902 None:intergenic 15.0%
!! TCAAAAATAAATCAAATTCA+CGG - chr4_1:27671883-27671902 None:intergenic 15.0%
!!! TTTGATATAATTCTAAAATG+GGG + chr4_1:27673257-27673276 Msa0542580:intron 15.0%
!! ACATGTTAAGAAATTTAAAA+TGG + chr4_1:27673305-27673324 Msa0542580:intron 15.0%
!!! GACAACTTTTTAATAATAAT+TGG + chr4_1:27673366-27673385 Msa0542580:intron 15.0%
!!! CTAAATAGTAAAAAGATTTT+AGG + chr4_1:27673722-27673741 Msa0542580:intron 15.0%
!!! ATTAATGAAGCTATTTTTTT+AGG + chr4_1:27674058-27674077 Msa0542580:intron 15.0%
!!! ATTCTATCAAATTTATTTTC+CGG + chr4_1:27674439-27674458 Msa0542580:intron 15.0%
!! AAACAAAATAAACAAAAAGA+AGG - chr4_1:27674840-27674859 None:intergenic 15.0%
!!! TTCTTTTTGTTTATTTTGTT+TGG + chr4_1:27674839-27674858 Msa0542580:intron 15.0%
!!! TTTTTTTTTGTATAAATGAG+TGG - chr4_1:27675118-27675137 None:intergenic 15.0%
!!! AAAATGATAATGAATTTGTT+TGG - chr4_1:27675332-27675351 None:intergenic 15.0%
!!! AATTTTTTTTTTTAAGTCAC+AGG - chr4_1:27675464-27675483 None:intergenic 15.0%
!!! TTTCAAATCAAATTTTCAAA+AGG + chr4_1:27675520-27675539 Msa0542580:intron 15.0%
!!! TTATTTGTTTTCATTTCTAT+TGG - chr4_1:27676084-27676103 None:intergenic 15.0%
!! AAAAGTTAAATAATGAAAAG+TGG + chr4_1:27676261-27676280 Msa0542580:intron 15.0%
!! AAAGTTAAATAATGAAAAGT+GGG + chr4_1:27676262-27676281 Msa0542580:intron 15.0%
!!! AAAAATTTCTTTTGTAACAA+AGG - chr4_1:27676451-27676470 None:intergenic 15.0%
!!! TTTTTTTCATTTTGTTTAGT+TGG + chr4_1:27676467-27676486 Msa0542580:intron 15.0%
!! GATAATAATGTAATAATTAC+AGG + chr4_1:27677974-27677993 Msa0542580:intron 15.0%
!! TACTTAATCTAAATGAAAAT+AGG - chr4_1:27679451-27679470 None:intergenic 15.0%
!! ATTAAGTAAAACTTCTAATA+GGG + chr4_1:27679463-27679482 Msa0542580:intron 15.0%
!! GTTGCAAAAAAAAAAAAAAA+AGG - chr4_1:27679508-27679527 None:intergenic 15.0%
!!! TTGATTGTCATTTAAATTAA+AGG + chr4_1:27679606-27679625 Msa0542580:intron 15.0%
!!! TGATTGTCATTTAAATTAAA+GGG + chr4_1:27679607-27679626 Msa0542580:intron 15.0%
!!! TTTGGAAATTTTAATTGATT+TGG + chr4_1:27679942-27679961 Msa0542580:intron 15.0%
!!! ATTTTAATTGATTTGGAATT+TGG + chr4_1:27679949-27679968 Msa0542580:intron 15.0%
!!! CTTATTATTTTCATATATGA+AGG + chr4_1:27680322-27680341 Msa0542580:intron 15.0%
!!! GTTTTATTAAATTTAGAAGT+CGG + chr4_1:27680397-27680416 Msa0542580:intron 15.0%
!!! AATTTTTTTTTTTTACCTGT+GGG - chr4_1:27680684-27680703 None:intergenic 15.0%
!!! TAATTTTTTTTTTTTACCTG+TGG - chr4_1:27680685-27680704 None:intergenic 15.0%
!! AAAAATTAAATAACACACAA+AGG + chr4_1:27680697-27680716 Msa0542580:three_prime_UTR 15.0%
!!! GTATTTTTAGACTTAAAAAT+TGG + chr4_1:27681021-27681040 Msa0542580:three_prime_UTR 15.0%
!! TTAATGATTATATGAGTAAG+TGG + chr4_1:27670432-27670451 Msa0542580:five_prime_UTR 20.0%
!! TAATGATTATATGAGTAAGT+GGG + chr4_1:27670433-27670452 Msa0542580:five_prime_UTR 20.0%
!! GAAAATATTGGATATAGAAA+CGG + chr4_1:27670464-27670483 Msa0542580:five_prime_UTR 20.0%
!! TATCCTTTCATTTCATATAT+TGG + chr4_1:27670697-27670716 Msa0542580:five_prime_UTR 20.0%
!! AATCCAATATATGAAATGAA+AGG - chr4_1:27670703-27670722 None:intergenic 20.0%
!!! TTTTTTTTTGGTTTTGGTTT+TGG + chr4_1:27670762-27670781 Msa0542580:intron 20.0%
!!! TTATCAATGACAACATTTTT+CGG + chr4_1:27671281-27671300 Msa0542580:intron 20.0%
!! CTAAAAAAACTAAAATACAC+GGG - chr4_1:27671499-27671518 None:intergenic 20.0%
!! AAATAGTAGGACTATTTAAA+AGG + chr4_1:27671623-27671642 Msa0542580:intron 20.0%
!! AAAAATAAATCAAATTCACG+GGG - chr4_1:27671881-27671900 None:intergenic 20.0%
!! CAAAAATAAATCAAATTCAC+GGG - chr4_1:27671882-27671901 None:intergenic 20.0%
!! CAAAAATAAATCAAATTCAC+GGG - chr4_1:27671882-27671901 None:intergenic 20.0%
!! TTATCATTATAGAATTGAAG+TGG + chr4_1:27672455-27672474 Msa0542580:intron 20.0%
!! TATCATTATAGAATTGAAGT+GGG + chr4_1:27672456-27672475 Msa0542580:intron 20.0%
!! ACTAAAATGTAAGATATACA+CGG - chr4_1:27673088-27673107 None:intergenic 20.0%
!!! TTGATATAATTCTAAAATGG+GGG + chr4_1:27673258-27673277 Msa0542580:intron 20.0%
!! ATATCATTGTAGAATTGAAA+TGG + chr4_1:27673661-27673680 Msa0542580:intron 20.0%
!!! AATAGTAAAAAGATTTTAGG+AGG + chr4_1:27673725-27673744 Msa0542580:intron 20.0%
!! CTAACTTTCATATACTTAAT+AGG - chr4_1:27673773-27673792 None:intergenic 20.0%
!! ATGTGTTCCTTAAAAAAAAA+AGG + chr4_1:27673941-27673960 Msa0542580:intron 20.0%
!!! ATGTCTACCTTTTTTTTTTA+AGG - chr4_1:27673951-27673970 None:intergenic 20.0%
!! GAATAAAACTATAGATGAAA+AGG - chr4_1:27674423-27674442 None:intergenic 20.0%
!! TATTTAAAAACATCTTTGAC+CGG - chr4_1:27674461-27674480 None:intergenic 20.0%
!! TAATAGTCTAACCAAATAAA+TGG - chr4_1:27674787-27674806 None:intergenic 20.0%
!! AATATAATAACTGCAATGAA+GGG - chr4_1:27674942-27674961 None:intergenic 20.0%
!! AAATATAATAACTGCAATGA+AGG - chr4_1:27674943-27674962 None:intergenic 20.0%
!!! TGCAGTTATTATATTTTTAG+AGG + chr4_1:27674947-27674966 Msa0542580:intron 20.0%
!! AAAAAAAAATTGCATCTATC+AGG + chr4_1:27675132-27675151 Msa0542580:intron 20.0%
!!! TTTAAGAAAAAGTTGATGTT+TGG - chr4_1:27675248-27675267 None:intergenic 20.0%
!!! TTGATTTGAAATACAAATAG+AGG - chr4_1:27675511-27675530 None:intergenic 20.0%
!!! TTTATTTTCTTATTAACAGC+CGG + chr4_1:27675653-27675672 Msa0542580:intron 20.0%
!!! AGAAAATTTGAAATAAGTGA+AGG + chr4_1:27676339-27676358 Msa0542580:intron 20.0%
!!! GAAAATTTGAAATAAGTGAA+GGG + chr4_1:27676340-27676359 Msa0542580:intron 20.0%
!! TATTCCTTTCTTATATTAAG+AGG + chr4_1:27676675-27676694 Msa0542580:intron 20.0%
!! ATTCCTTTCTTATATTAAGA+GGG + chr4_1:27676676-27676695 Msa0542580:intron 20.0%
!! AATAAGAGAGAAAAAAAGAA+AGG - chr4_1:27676745-27676764 None:intergenic 20.0%
!! AAAGTTAAAGTAGAAGAAAA+AGG - chr4_1:27676822-27676841 None:intergenic 20.0%
!! AAAGAAACTTTACTTGTAAT+AGG + chr4_1:27676931-27676950 Msa0542580:five_prime_UTR 20.0%
!!! ATCATATTTTCAATCTTGTT+AGG - chr4_1:27677708-27677727 None:intergenic 20.0%
!! TAACAAGATTGAAAATATGA+TGG + chr4_1:27677707-27677726 Msa0542580:CDS 20.0%
!! AAAATCAAAATGATACTCAA+AGG + chr4_1:27677877-27677896 Msa0542580:CDS 20.0%
!! GATTAAGTAAAACTTCTAAT+AGG + chr4_1:27679462-27679481 Msa0542580:intron 20.0%
!!! ATTTTCATATATGAAGGAAA+TGG + chr4_1:27680328-27680347 Msa0542580:intron 20.0%
!! TTCTGTTATGTTAATATTGA+CGG + chr4_1:27680363-27680382 Msa0542580:intron 20.0%
!!! ATAGTATTATTGATGATTGA+TGG - chr4_1:27680548-27680567 None:intergenic 20.0%
!! AGAAAAAGAAAGAAAAGAAA+TGG - chr4_1:27680635-27680654 None:intergenic 20.0%
!!! ATTTTTTTTTTTTACCTGTG+GGG - chr4_1:27680683-27680702 None:intergenic 20.0%
!! TTGAGTTAAAGTTAAAAAAG+AGG + chr4_1:27680919-27680938 Msa0542580:three_prime_UTR 20.0%
!! CTGAAACATAATATTATCAA+AGG - chr4_1:27680954-27680973 None:intergenic 20.0%
!!! TGTGTGTGTTTTTATTTATG+GGG - chr4_1:27670522-27670541 None:intergenic 25.0%
!!! CTGTGTGTGTTTTTATTTAT+GGG - chr4_1:27670523-27670542 None:intergenic 25.0%
!!! TCTGTGTGTGTTTTTATTTA+TGG - chr4_1:27670524-27670543 None:intergenic 25.0%
! TAAATAAAAACACACACAGA+TGG + chr4_1:27670524-27670543 Msa0542580:five_prime_UTR 25.0%
! AAATAAAAACACACACAGAT+GGG + chr4_1:27670525-27670544 Msa0542580:five_prime_UTR 25.0%
! ACTTAAACAAACAAACACAA+TGG - chr4_1:27670638-27670657 None:intergenic 25.0%
! ATTGTGTTTGTTTGTTTAAG+TGG + chr4_1:27670637-27670656 Msa0542580:five_prime_UTR 25.0%
!! TATAAGTCGATGTATTTTTC+AGG - chr4_1:27671179-27671198 None:intergenic 25.0%
! ATAATTATTATGCACATGAC+AGG - chr4_1:27671585-27671604 None:intergenic 25.0%
! GAGGTGATATTATAAATAGT+AGG + chr4_1:27671610-27671629 Msa0542580:intron 25.0%
! TCAGAAGTAACATAAATACA+CGG - chr4_1:27671715-27671734 None:intergenic 25.0%
!!! CATTTTAGTTTATGAGAGTT+CGG + chr4_1:27671932-27671951 Msa0542580:intron 25.0%
!!! CTAAACAAACATTGATTTAC+AGG - chr4_1:27672069-27672088 None:intergenic 25.0%
!! ATACTATTTAGAACATCACA+TGG - chr4_1:27672156-27672175 None:intergenic 25.0%
! TAAACAAAAATGCATGAGAT+TGG - chr4_1:27672279-27672298 None:intergenic 25.0%
! ATCATTATAGAATTGAAGTG+GGG + chr4_1:27672457-27672476 Msa0542580:intron 25.0%
!! TATCAAAGTTAGTTTAGTCA+GGG + chr4_1:27672546-27672565 Msa0542580:intron 25.0%
! TTAAAGGAACGTAAATGTAT+GGG - chr4_1:27672581-27672600 None:intergenic 25.0%
! TTTAAAGGAACGTAAATGTA+TGG - chr4_1:27672582-27672601 None:intergenic 25.0%
!!! GCATTGACTAACATTTTTAA+AGG - chr4_1:27672597-27672616 None:intergenic 25.0%
! ACTTATCAACTAAAATGTAC+GGG - chr4_1:27672675-27672694 None:intergenic 25.0%
! CACTTATCAACTAAAATGTA+CGG - chr4_1:27672676-27672695 None:intergenic 25.0%
! ATCATTGTAGAATTAAAGTG+AGG + chr4_1:27672702-27672721 Msa0542580:intron 25.0%
! ACTAAACTAACTTTGATACA+CGG - chr4_1:27672544-27672563 None:intergenic 25.0%
! TAAAATGTAAGATATACACG+GGG - chr4_1:27673086-27673105 None:intergenic 25.0%
! CTAAAATGTAAGATATACAC+GGG - chr4_1:27673087-27673106 None:intergenic 25.0%
!! GTATCAAAGTTAGTTTAGTT+AGG + chr4_1:27673216-27673235 Msa0542580:intron 25.0%
! CATAAAAAACCAAAATGCAT+AGG - chr4_1:27673589-27673608 None:intergenic 25.0%
! CATAATAGACTAAAATACAC+TGG - chr4_1:27673636-27673655 None:intergenic 25.0%
!!! CAGTGTATTTTAGTCTATTA+TGG + chr4_1:27673634-27673653 Msa0542580:intron 25.0%
! CTTTCATATACTTAATAGGT+TGG - chr4_1:27673769-27673788 None:intergenic 25.0%
! ACAATGCATAAAAATATGCA+AGG + chr4_1:27673844-27673863 Msa0542580:intron 25.0%
! GTAAAATATCATTTATTCGC+TGG + chr4_1:27673975-27673994 Msa0542580:intron 25.0%
!!! ATTTTTCAAAATCTTGCATG+TGG - chr4_1:27674519-27674538 None:intergenic 25.0%
!! CGATCTTGATTTTTCTTAAT+GGG - chr4_1:27674582-27674601 None:intergenic 25.0%
! CCATTAAGAAAAATCAAGAT+CGG + chr4_1:27674580-27674599 Msa0542580:intron 25.0%
!! TTTTAGATCCTCCATTTATT+TGG + chr4_1:27674773-27674792 Msa0542580:intron 25.0%
!! TGTTTTCTATTTTCTTCTTC+TGG + chr4_1:27674870-27674889 Msa0542580:intron 25.0%
!! GTTTTCTATTTTCTTCTTCT+GGG + chr4_1:27674871-27674890 Msa0542580:intron 25.0%
! CATTGCAGCTATTATAATTA+TGG + chr4_1:27674970-27674989 Msa0542580:intron 25.0%
! GTAAAGAATATCAGTATATC+AGG - chr4_1:27675226-27675245 None:intergenic 25.0%
!!! TTTTTTTTTAAGTCACAGGA+AGG - chr4_1:27675460-27675479 None:intergenic 25.0%
! ACAAACATCAAAGAAATGTA+TGG - chr4_1:27675772-27675791 None:intergenic 25.0%
! TACATTTCTTTGATGTTTGT+TGG + chr4_1:27675772-27675791 Msa0542580:intron 25.0%
!! AAAAAAGAAAAAGTGCAGTA+AGG + chr4_1:27675891-27675910 Msa0542580:intron 25.0%
!! GTGTTTGTGTATTATTGATT+TGG + chr4_1:27675921-27675940 Msa0542580:intron 25.0%
! AGTAATTGATGGAAAAAACA+CGG - chr4_1:27676148-27676167 None:intergenic 25.0%
! AAAAACGAGTAAGTAATTGA+TGG - chr4_1:27676159-27676178 None:intergenic 25.0%
! TCTTCTCACATAAAATATGT+GGG - chr4_1:27676302-27676321 None:intergenic 25.0%
!! ATTTGAATTTGAAGTGACAT+TGG + chr4_1:27676375-27676394 Msa0542580:intron 25.0%
!! TTTGAATTTGAAGTGACATT+GGG + chr4_1:27676376-27676395 Msa0542580:intron 25.0%
! TATAAGAAAGGAATATGTTG+TGG - chr4_1:27676670-27676689 None:intergenic 25.0%
! AATCCCTCTTAATATAAGAA+AGG - chr4_1:27676682-27676701 None:intergenic 25.0%
! AGAGAGACATAATAATATGA+TGG - chr4_1:27676711-27676730 None:intergenic 25.0%
!!! GAAACATACTCATTTTAACT+TGG + chr4_1:27676883-27676902 Msa0542580:five_prime_UTR 25.0%
!! TGATATTTGATGCATTTTCA+GGG - chr4_1:27677098-27677117 None:intergenic 25.0%
!! ATGATATTTGATGCATTTTC+AGG - chr4_1:27677099-27677118 None:intergenic 25.0%
! TGAAAATGCATCAAATATCA+TGG + chr4_1:27677098-27677117 Msa0542580:CDS 25.0%
! GAAAATGCATCAAATATCAT+GGG + chr4_1:27677099-27677118 Msa0542580:CDS 25.0%
! AAAATTCATCAACTTCTTCA+AGG + chr4_1:27677301-27677320 Msa0542580:CDS 25.0%
! TGCAATTTACAACATTGAAA+AGG - chr4_1:27678643-27678662 None:intergenic 25.0%
! AACAGTGAAAGTAATGAAAA+TGG + chr4_1:27679372-27679391 Msa0542580:CDS 25.0%
!!! TTTTAACATGGACTAAAAAG+AGG - chr4_1:27679536-27679555 None:intergenic 25.0%
!!! CAGAACTTTTGTTTTTAACA+TGG - chr4_1:27679548-27679567 None:intergenic 25.0%
! CATGTTAAAAACAAAAGTTC+TGG + chr4_1:27679546-27679565 Msa0542580:intron 25.0%
! CAATCAAAGTTAGAAAAACT+TGG - chr4_1:27679593-27679612 None:intergenic 25.0%
! AAAGGGACTTTGTATTTAAA+TGG + chr4_1:27679624-27679643 Msa0542580:intron 25.0%
!! TAGTTCTCTTTCTAGAAATT+TGG + chr4_1:27680108-27680127 Msa0542580:intron 25.0%
! TATGAAAACTGTTACAACAA+CGG + chr4_1:27680210-27680229 Msa0542580:intron 25.0%
! GTCTCTAACATCTTAATAAT+GGG - chr4_1:27680236-27680255 None:intergenic 25.0%
! TGTCTCTAACATCTTAATAA+TGG - chr4_1:27680237-27680256 None:intergenic 25.0%
! TTAAGATGTTAGAGACAAAA+CGG + chr4_1:27680240-27680259 Msa0542580:intron 25.0%
!!! TCTCTACATATTTTTGTTGT+TGG - chr4_1:27680491-27680510 None:intergenic 25.0%
!! TTTTACGTATGGATTTTGTA+TGG - chr4_1:27680582-27680601 None:intergenic 25.0%
! TAAAAAAGCAGTTTCAGTAA+AGG + chr4_1:27680597-27680616 Msa0542580:three_prime_UTR 25.0%
!!! CACACAAAGGTATTATTATT+AGG + chr4_1:27680710-27680729 Msa0542580:three_prime_UTR 25.0%
!!! TTTCTAAAATCTTTTCTGTC+TGG - chr4_1:27680985-27681004 None:intergenic 25.0%
!!! TGTGAGCTTTTTGATTTTAA+AGG + chr4_1:27681069-27681088 Msa0542580:three_prime_UTR 25.0%
AATAAAAACACACACAGATG+GGG + chr4_1:27670526-27670545 Msa0542580:five_prime_UTR 30.0%
AACAAACACAATGGCTTATT+TGG - chr4_1:27670629-27670648 None:intergenic 30.0%
! TAACTTGTCGGTATTATTCA+CGG + chr4_1:27671073-27671092 Msa0542580:intron 30.0%
!!! ACACAAGACATGTTTTTTGA+AGG - chr4_1:27671528-27671547 None:intergenic 30.0%
CAGAAGTAACATAAATACAC+GGG - chr4_1:27671714-27671733 None:intergenic 30.0%
! GACATTGATTAAAAATGCGT+GGG - chr4_1:27671753-27671772 None:intergenic 30.0%
GTAGAATTGAATTGAAGTGT+TGG + chr4_1:27671816-27671835 Msa0542580:intron 30.0%
ATCATTCTCGAATTAAAGTG+AGG + chr4_1:27671980-27671999 Msa0542580:intron 30.0%
CTAAAATGAACGGGATAAAT+GGG - chr4_1:27672421-27672440 None:intergenic 30.0%
ACTAAAATGAACGGGATAAA+TGG - chr4_1:27672422-27672441 None:intergenic 30.0%
CCTCATAAACTAAAATGAAC+GGG - chr4_1:27672430-27672449 None:intergenic 30.0%
CCCTCATAAACTAAAATGAA+CGG - chr4_1:27672431-27672450 None:intergenic 30.0%
!!! CCGTTCATTTTAGTTTATGA+GGG + chr4_1:27672428-27672447 Msa0542580:intron 30.0%
TTGTTCATGTGAAAACATTC+CGG - chr4_1:27672498-27672517 None:intergenic 30.0%
! GTATCAAAGTTAGTTTAGTC+AGG + chr4_1:27672545-27672564 Msa0542580:intron 30.0%
ACAACTTGTCATGTAAATCA+AGG + chr4_1:27672779-27672798 Msa0542580:intron 30.0%
CTAAACTAACTTTGATACAC+GGG - chr4_1:27672543-27672562 None:intergenic 30.0%
TCAAACGTAACTCAAATACA+CGG - chr4_1:27672981-27673000 None:intergenic 30.0%
CATAAAAATATGCAAGGTCT+GGG + chr4_1:27673850-27673869 Msa0542580:intron 30.0%
ATAAAAATATGCAAGGTCTG+GGG + chr4_1:27673851-27673870 Msa0542580:intron 30.0%
!!! TGTCATTGATTTTTTGGTAG+TGG - chr4_1:27673889-27673908 None:intergenic 30.0%
!!! AGCATGTGTCATTGATTTTT+TGG - chr4_1:27673895-27673914 None:intergenic 30.0%
AGGAACACATATATCTAACA+AGG - chr4_1:27673931-27673950 None:intergenic 30.0%
!! TATTCGCTGGCTTAAAAAAA+AGG + chr4_1:27673988-27674007 Msa0542580:intron 30.0%
AAAAAAAAGGTTGACATAGC+TGG + chr4_1:27674001-27674020 Msa0542580:intron 30.0%
! ACATAGCTGGCTTAAAAAAA+AGG + chr4_1:27674014-27674033 Msa0542580:intron 30.0%
GAAATGAATATTGTGTGTGT+TGG - chr4_1:27674255-27674274 None:intergenic 30.0%
! TATACCTACAACCATCTTTT+TGG + chr4_1:27674479-27674498 Msa0542580:intron 30.0%
!!! TTTCTTAATGGGTTTTGTAG+AGG - chr4_1:27674571-27674590 None:intergenic 30.0%
! CCGATCTTGATTTTTCTTAA+TGG - chr4_1:27674583-27674602 None:intergenic 30.0%
ACAAAATTCTGACCTAGATT+TGG - chr4_1:27674690-27674709 None:intergenic 30.0%
TAGTCTAACCAAATAAATGG+AGG - chr4_1:27674784-27674803 None:intergenic 30.0%
!! TAGAGAGGTTAAGTTGTTTT+GGG - chr4_1:27675368-27675387 None:intergenic 30.0%
GAAGAAAAAGAAAACTAGAG+AGG - chr4_1:27675383-27675402 None:intergenic 30.0%
!!! AATTAGTTTTCCATCCATTG+TGG + chr4_1:27675572-27675591 Msa0542580:intron 30.0%
!!! ATTAGTTTTCCATCCATTGT+GGG + chr4_1:27675573-27675592 Msa0542580:intron 30.0%
!!! CATGGAAATGTTTTTTTTCC+AGG - chr4_1:27675823-27675842 None:intergenic 30.0%
!! CAACTTCATTTTTGTGATCA+TGG - chr4_1:27675841-27675860 None:intergenic 30.0%
ACAAACACAGTAAGACTATA+AGG + chr4_1:27676109-27676128 Msa0542580:intron 30.0%
GTAATTGATGGAAAAAACAC+GGG - chr4_1:27676147-27676166 None:intergenic 30.0%
CCTCTACAAAAAGAAAAACA+GGG - chr4_1:27676195-27676214 None:intergenic 30.0%
ACCTCTACAAAAAGAAAAAC+AGG - chr4_1:27676196-27676215 None:intergenic 30.0%
CTCTTCTCACATAAAATATG+TGG - chr4_1:27676303-27676322 None:intergenic 30.0%
! AATTTGAAATAAGTGAAGGG+AGG + chr4_1:27676343-27676362 Msa0542580:intron 30.0%
! ATTTGAAATAAGTGAAGGGA+GGG + chr4_1:27676344-27676363 Msa0542580:intron 30.0%
TGGGAAATGTAATAAGAGTA+AGG + chr4_1:27676395-27676414 Msa0542580:intron 30.0%
TTTGTTTAGTTGGCATGTAA+TGG + chr4_1:27676477-27676496 Msa0542580:intron 30.0%
!! GCTAGACTATTAGTTGTTTT+CGG + chr4_1:27676525-27676544 Msa0542580:intron 30.0%
TATTATTACCCTAACCTCAT+TGG - chr4_1:27676641-27676660 None:intergenic 30.0%
GAGACATAATAATATGATGG+TGG - chr4_1:27676708-27676727 None:intergenic 30.0%
TTAAAAGTAGTATTCTCGTG+TGG - chr4_1:27676774-27676793 None:intergenic 30.0%
AAGTAGAAGAAAAAGGAGAT+GGG - chr4_1:27676815-27676834 None:intergenic 30.0%
AAAGTAGAAGAAAAAGGAGA+TGG - chr4_1:27676816-27676835 None:intergenic 30.0%
!!! CATACTCATTTTAACTTGGT+AGG + chr4_1:27676887-27676906 Msa0542580:five_prime_UTR 30.0%
!!! TCATTTTAACTTGGTAGGTA+GGG + chr4_1:27676892-27676911 Msa0542580:five_prime_UTR 30.0%
! TCTTTTCTTGAACCAAATCA+TGG + chr4_1:27677023-27677042 Msa0542580:exon 30.0%
!! GTTTTCAAGGATCAAAAACA+TGG + chr4_1:27677071-27677090 Msa0542580:CDS 30.0%
ACTGAATGAATAAGTGATTC+AGG - chr4_1:27677180-27677199 None:intergenic 30.0%
TTCAAAGCTAGAAAAGAGTT+AGG + chr4_1:27677204-27677223 Msa0542580:CDS 30.0%
! TTTTGCCTTGAAAGGAAATT+AGG - chr4_1:27677285-27677304 None:intergenic 30.0%
! TTGATGAATTTTGCCTTGAA+AGG - chr4_1:27677293-27677312 None:intergenic 30.0%
GTTTCAAAACCATGATGATT+TGG + chr4_1:27677407-27677426 Msa0542580:CDS 30.0%
CATCATTCAAGAAAGAAAGT+TGG - chr4_1:27677476-27677495 None:intergenic 30.0%
CAACTTTCTTTCTTGAATGA+TGG + chr4_1:27677474-27677493 Msa0542580:CDS 30.0%
! AATGATGCTTCTTATTTAGC+TGG + chr4_1:27677558-27677577 Msa0542580:CDS 30.0%
!!! CATGTCTTTATTTTGCAAGA+GGG + chr4_1:27677616-27677635 Msa0542580:CDS 30.0%
GTAAAAATGGTACTAGTTGT+AGG + chr4_1:27677643-27677662 Msa0542580:CDS 30.0%
ATCTTCTCATCAACAAAGAT+TGG + chr4_1:27677764-27677783 Msa0542580:CDS 30.0%
! AAAAGGAAATTCATGCCTTT+TGG - chr4_1:27677846-27677865 None:intergenic 30.0%
! AAGATGTTTCTGAATACTTC+AGG + chr4_1:27678157-27678176 Msa0542580:CDS 30.0%
!!! TACGTTTTTTGCAGCAAATT+TGG + chr4_1:27678259-27678278 Msa0542580:intron 30.0%
GTGCAATAACTTACTTATCT+GGG - chr4_1:27678447-27678466 None:intergenic 30.0%
! ATGATTCATGTGGTTTGTAT+AGG + chr4_1:27678693-27678712 Msa0542580:intron 30.0%
AAGATACATCACATGTTAAG+AGG - chr4_1:27678857-27678876 None:intergenic 30.0%
! AAAAGTTCTGGCATTTATTC+AGG + chr4_1:27679558-27679577 Msa0542580:intron 30.0%
GTTAATGAATAAACGCAGTT+TGG + chr4_1:27679646-27679665 Msa0542580:CDS 30.0%
AGTAGATGTATCTGAATCAA+TGG - chr4_1:27679765-27679784 None:intergenic 30.0%
!! ACATCTACTAGCTCTAAATT+TGG + chr4_1:27679776-27679795 Msa0542580:CDS 30.0%
GGTAATTGGCAGTTATTATA+TGG - chr4_1:27679854-27679873 None:intergenic 30.0%
ATAATAACTGCCAATTACCA+AGG + chr4_1:27679855-27679874 Msa0542580:CDS 30.0%
AATGGAAAGATGAAATGTGA+TGG - chr4_1:27679886-27679905 None:intergenic 30.0%
!! TTGATTTGGAATTTGGACTT+AGG + chr4_1:27679956-27679975 Msa0542580:intron 30.0%
! ATTAATTTTACCTGAACCTC+AGG - chr4_1:27680049-27680068 None:intergenic 30.0%
! GTTTTCATAGAGTGTATGTT+TGG - chr4_1:27680199-27680218 None:intergenic 30.0%
!!! TTTTGTTGTTGGATTTGTCA+AGG - chr4_1:27680480-27680499 None:intergenic 30.0%
!! TTATTGATGATTGATGGTGA+TGG - chr4_1:27680542-27680561 None:intergenic 30.0%
!!! TGAAACTGCTTTTTTACGTA+TGG - chr4_1:27680593-27680612 None:intergenic 30.0%
GTACAAAGGACTTGAAATTA+TGG - chr4_1:27680757-27680776 None:intergenic 30.0%
TGGGAGAGAGAAGAAAATAT+TGG + chr4_1:27670452-27670471 Msa0542580:five_prime_UTR 35.0%
!!! AAGTCGATGTATTTTTCAGG+AGG - chr4_1:27671176-27671195 None:intergenic 35.0%
! CGACATTGATTAAAAATGCG+TGG - chr4_1:27671754-27671773 None:intergenic 35.0%
TTCGTAAACTAAAATGCACG+GGG - chr4_1:27672107-27672126 None:intergenic 35.0%
CTTCGTAAACTAAAATGCAC+GGG - chr4_1:27672108-27672127 None:intergenic 35.0%
CCTTCGTAAACTAAAATGCA+CGG - chr4_1:27672109-27672128 None:intergenic 35.0%
!!! CCCGTTCATTTTAGTTTATG+AGG + chr4_1:27672427-27672446 Msa0542580:intron 35.0%
GGGGTGATATTAAAAATAGC+CGG + chr4_1:27672476-27672495 Msa0542580:intron 35.0%
CTGAAATGCATGAAAGAAGT+GGG - chr4_1:27672619-27672638 None:intergenic 35.0%
ACTGAAATGCATGAAAGAAG+TGG - chr4_1:27672620-27672639 None:intergenic 35.0%
ATCAACTAAAATGTACGGGA+TGG - chr4_1:27672671-27672690 None:intergenic 35.0%
CTTCATCAACTAAAATGTGC+GGG - chr4_1:27672829-27672848 None:intergenic 35.0%
CCTTCATCAACTAAAATGTG+CGG - chr4_1:27672830-27672849 None:intergenic 35.0%
GTGCAATATTGCACATGTTA+AGG - chr4_1:27673431-27673450 None:intergenic 35.0%
! TCAACTTCTCCTATGCATTT+TGG + chr4_1:27673577-27673596 Msa0542580:intron 35.0%
GCATAAAAATATGCAAGGTC+TGG + chr4_1:27673849-27673868 Msa0542580:intron 35.0%
!!! ATTGATTTTTTGGTAGTGGC+CGG - chr4_1:27673885-27673904 None:intergenic 35.0%
ATATACTCCTCTCTCTATCT+CGG + chr4_1:27674160-27674179 Msa0542580:intron 35.0%
! AGAGTTTTCCAGAACTTCTT+TGG - chr4_1:27674301-27674320 None:intergenic 35.0%
! TTCTCCCATCTTGTATGTTT+TGG + chr4_1:27674663-27674682 Msa0542580:intron 35.0%
TGGACCAAAACATACAAGAT+GGG - chr4_1:27674670-27674689 None:intergenic 35.0%
TTGGACCAAAACATACAAGA+TGG - chr4_1:27674671-27674690 None:intergenic 35.0%
!!! GTATGTTTTGGTCCAAATCT+AGG + chr4_1:27674675-27674694 Msa0542580:intron 35.0%
!!! GGGTGTGCACAATTTTTTAA+AGG + chr4_1:27674891-27674910 Msa0542580:intron 35.0%
GTTGCAATGAAAGATGAAGT+GGG - chr4_1:27675084-27675103 None:intergenic 35.0%
TGTTGCAATGAAAGATGAAG+TGG - chr4_1:27675085-27675104 None:intergenic 35.0%
! ATTGCATCTATCAGGTTTTC+AGG + chr4_1:27675140-27675159 Msa0542580:intron 35.0%
!! CTAGAGAGGTTAAGTTGTTT+TGG - chr4_1:27675369-27675388 None:intergenic 35.0%
CTTCTATCAGTTTGTAACAC+CGG - chr4_1:27675675-27675694 None:intergenic 35.0%
AGAACATTGTTCAACTTTCC+TGG + chr4_1:27675802-27675821 Msa0542580:intron 35.0%
!! CCCTGTTTTTCTTTTTGTAG+AGG + chr4_1:27676192-27676211 Msa0542580:intron 35.0%
!! GTGAGAAGAGAGTATCTTAT+AGG + chr4_1:27676313-27676332 Msa0542580:intron 35.0%
GACATCACATTAGTTAAGTG+AGG + chr4_1:27676554-27676573 Msa0542580:intron 35.0%
! ACATGTTTTACCCCTAATTG+TGG + chr4_1:27676605-27676624 Msa0542580:intron 35.0%
! CATGTTTTACCCCTAATTGT+GGG + chr4_1:27676606-27676625 Msa0542580:intron 35.0%
! TTTCTCTTGTTATGCTTTGC+AGG + chr4_1:27676845-27676864 Msa0542580:intron 35.0%
!!! CTCATTTTAACTTGGTAGGT+AGG + chr4_1:27676891-27676910 Msa0542580:five_prime_UTR 35.0%
TTCTTGAACCAAATCATGGA+TGG + chr4_1:27677027-27677046 Msa0542580:exon 35.0%
CTTCATAACCATCCATGATT+TGG - chr4_1:27677038-27677057 None:intergenic 35.0%
TGGTTATGAAGCAACTAAGA+TGG + chr4_1:27677047-27677066 Msa0542580:CDS 35.0%
! CAACTAAGATGGTGTTTTCA+AGG + chr4_1:27677058-27677077 Msa0542580:CDS 35.0%
TTGCTTCTTAGTAAAGAGCA+TGG + chr4_1:27677123-27677142 Msa0542580:CDS 35.0%
CTTGAAAGGAAATTAGGTGA+AGG - chr4_1:27677279-27677298 None:intergenic 35.0%
CTTCACCTAATTTCCTTTCA+AGG + chr4_1:27677277-27677296 Msa0542580:CDS 35.0%
!!! GTTTTGAAACTGATCAGACA+TGG - chr4_1:27677397-27677416 None:intergenic 35.0%
!! AACCATGATGATTTGGTTGT+TGG + chr4_1:27677414-27677433 Msa0542580:CDS 35.0%
TGGAGTTGGAAATCATCAAT+TGG - chr4_1:27677450-27677469 None:intergenic 35.0%
! TCAAGAAAGAAAGTTGGTCT+TGG - chr4_1:27677470-27677489 None:intergenic 35.0%
TTCTGATCCTTCATATGGTT+GGG + chr4_1:27677497-27677516 Msa0542580:CDS 35.0%
GAGGTAATTCTTCTCTTCAT+AGG + chr4_1:27677520-27677539 Msa0542580:CDS 35.0%
!! TTCTTATTTAGCTGGTTCTG+AGG + chr4_1:27677566-27677585 Msa0542580:CDS 35.0%
CCTCTTGCAAAATAAAGACA+TGG - chr4_1:27677618-27677637 None:intergenic 35.0%
!!! CCATGTCTTTATTTTGCAAG+AGG + chr4_1:27677615-27677634 Msa0542580:CDS 35.0%
ACTAGTTGTAGGTTTCTTCA+TGG + chr4_1:27677654-27677673 Msa0542580:CDS 35.0%
! GATTTTGTTGCTGCTGTAAA+AGG - chr4_1:27677863-27677882 None:intergenic 35.0%
! TGCAGCTTTAATGATGAATG+AGG + chr4_1:27678005-27678024 Msa0542580:CDS 35.0%
AATGAGGAGTTGCACAAATT+TGG + chr4_1:27678021-27678040 Msa0542580:CDS 35.0%
TGCACAAATTTGGAAGATCA+AGG + chr4_1:27678031-27678050 Msa0542580:CDS 35.0%
! TTTTCTTTGTACAGTCCTAC+TGG + chr4_1:27678069-27678088 Msa0542580:CDS 35.0%
AGTAGATTTGTCTTGAAGCT+GGG - chr4_1:27678104-27678123 None:intergenic 35.0%
AAGTAGATTTGTCTTGAAGC+TGG - chr4_1:27678105-27678124 None:intergenic 35.0%
! GTGAAGGACATTTTGTCTAA+AGG + chr4_1:27678358-27678377 Msa0542580:CDS 35.0%
! AGTACTTGTTAAGCCTTACA+AGG + chr4_1:27678408-27678427 Msa0542580:intron 35.0%
! ATTTTACCCTTCTCCTTGTA+AGG - chr4_1:27678424-27678443 None:intergenic 35.0%
GGTGCAATAACTTACTTATC+TGG - chr4_1:27678448-27678467 None:intergenic 35.0%
AGTGTCAAACACATATGAGA+AGG - chr4_1:27678469-27678488 None:intergenic 35.0%
TTCTCAGACTCGATTATCTT+CGG + chr4_1:27678555-27678574 Msa0542580:intron 35.0%
TATGCTCATCATGATTCATG+TGG + chr4_1:27678683-27678702 Msa0542580:intron 35.0%
! TACCAAGTTGAAGATCATAC+TGG - chr4_1:27678787-27678806 None:intergenic 35.0%
AGTATGATCTTCAACTTGGT+AGG + chr4_1:27678786-27678805 Msa0542580:intron 35.0%
ATAACACTGAAGACATGTTG+TGG + chr4_1:27678907-27678926 Msa0542580:CDS 35.0%
ATTCAACGTAGGAGGTTAAT+GGG + chr4_1:27678972-27678991 Msa0542580:CDS 35.0%
AACATGTTAGGAGATTGAGT+AGG - chr4_1:27679065-27679084 None:intergenic 35.0%
AGATTCTGATCGAACATGTT+AGG - chr4_1:27679077-27679096 None:intergenic 35.0%
! ATAAATACCCTCTGAGAACT+CGG - chr4_1:27679123-27679142 None:intergenic 35.0%
CAATCAGTCAATGGTTATGT+TGG + chr4_1:27679318-27679337 Msa0542580:CDS 35.0%
!! AGGAGCTTAATTTGCATGAA+TGG + chr4_1:27679418-27679437 Msa0542580:CDS 35.0%
! CTTTTGTAGGTGAAGCAAAA+GGG - chr4_1:27679697-27679716 None:intergenic 35.0%
TCTAATGGTCCATTAGAGAA+GGG - chr4_1:27679740-27679759 None:intergenic 35.0%
TCTGAATCAATGGTCTCTAA+TGG - chr4_1:27679755-27679774 None:intergenic 35.0%
ATATCAAGAGAAGCTGAAGT+TGG - chr4_1:27679818-27679837 None:intergenic 35.0%
AACTTCAGCTTCTCTTGATA+TGG + chr4_1:27679817-27679836 Msa0542580:CDS 35.0%
ACTTCAGCTTCTCTTGATAT+GGG + chr4_1:27679818-27679837 Msa0542580:CDS 35.0%
GGTGATGAAATTCATGTGAA+TGG - chr4_1:27679904-27679923 None:intergenic 35.0%
AAACATCCCAATAGTTCCAT+GGG - chr4_1:27679992-27680011 None:intergenic 35.0%
TAGAAAGAGAACTAGACTGA+GGG - chr4_1:27680102-27680121 None:intergenic 35.0%
GCATATGCTTAGTATTTCAG+TGG + chr4_1:27680141-27680160 Msa0542580:intron 35.0%
TATATGAAGGAAATGGCTTG+AGG + chr4_1:27680335-27680354 Msa0542580:intron 35.0%
ATATGAAGGAAATGGCTTGA+GGG + chr4_1:27680336-27680355 Msa0542580:intron 35.0%
ACGATGTGTTCAATCATTAC+AGG + chr4_1:27680427-27680446 Msa0542580:intron 35.0%
GAAATTATGGTACCTGTGAA+AGG - chr4_1:27680744-27680763 None:intergenic 35.0%
! ATATGTGCATGCTTTTCTCT+AGG - chr4_1:27680797-27680816 None:intergenic 35.0%
! AAAAGCATGCACATATGAAG+TGG + chr4_1:27680801-27680820 Msa0542580:three_prime_UTR 35.0%
CTCACAATAGTAGTAGTAAG+AGG - chr4_1:27681055-27681074 None:intergenic 35.0%
AAAAATCATCCCCGATCAAC+CGG - chr4_1:27670868-27670887 None:intergenic 40.0%
!!! CCGTGCATTTTAGTTTACGA+AGG + chr4_1:27672106-27672125 Msa0542580:intron 40.0%
ACTAAAATGTACGGGATGGA+TGG - chr4_1:27672667-27672686 None:intergenic 40.0%
!!! CCGCACATTTTAGTTGATGA+AGG + chr4_1:27672827-27672846 Msa0542580:intron 40.0%
!!! TTGATTTTTTGGTAGTGGCC+GGG - chr4_1:27673884-27673903 None:intergenic 40.0%
TCTCTTCACCAAAGAAGTTC+TGG + chr4_1:27674290-27674309 Msa0542580:intron 40.0%
!! GGAGACCGTAAAATTTGTTG+CGG - chr4_1:27674350-27674369 None:intergenic 40.0%
ATAGAACAACAAAACGAGCC+CGG - chr4_1:27674386-27674405 None:intergenic 40.0%
CTAGCCAAAAAGATGGTTGT+AGG - chr4_1:27674486-27674505 None:intergenic 40.0%
TCGAGATCTAGCCAAAAAGA+TGG - chr4_1:27674493-27674512 None:intergenic 40.0%
!! AATGGGTTTTGTAGAGGAGA+TGG - chr4_1:27674565-27674584 None:intergenic 40.0%
! ATGGGAGAAAAGCTCTTTTC+CGG - chr4_1:27674652-27674671 None:intergenic 40.0%
!! TATAGTTGTGCCACTTCCAA+AGG - chr4_1:27675602-27675621 None:intergenic 40.0%
AGAAAAAGGAGATGGGAAGT+AGG - chr4_1:27676808-27676827 None:intergenic 40.0%
TGGTAGGTAGGGTTTATTTG+TGG + chr4_1:27676903-27676922 Msa0542580:five_prime_UTR 40.0%
GGTGGAGAGTTATTAGAACA+AGG - chr4_1:27677234-27677253 None:intergenic 40.0%
! AAATTAGGTGAAGGTGATGG+AGG - chr4_1:27677270-27677289 None:intergenic 40.0%
AGGAAATTAGGTGAAGGTGA+TGG - chr4_1:27677273-27677292 None:intergenic 40.0%
ACTTCTTCAAGGCTTAGTAG+TGG + chr4_1:27677312-27677331 Msa0542580:CDS 40.0%
TAGTAGTAGCTACCCAAGAA+GGG - chr4_1:27677371-27677390 None:intergenic 40.0%
ATAGTAGTAGCTACCCAAGA+AGG - chr4_1:27677372-27677391 None:intergenic 40.0%
CACCAACAACCAAATCATCA+TGG - chr4_1:27677419-27677438 None:intergenic 40.0%
!! CATGATGATTTGGTTGTTGG+TGG + chr4_1:27677417-27677436 Msa0542580:CDS 40.0%
!! AAGAAAGTTGGTCTTGGAGT+TGG - chr4_1:27677464-27677483 None:intergenic 40.0%
!! GATGGTTCTGATCCTTCATA+TGG + chr4_1:27677492-27677511 Msa0542580:CDS 40.0%
GTTCTGATCCTTCATATGGT+TGG + chr4_1:27677496-27677515 Msa0542580:CDS 40.0%
TCTGATCCTTCATATGGTTG+GGG + chr4_1:27677498-27677517 Msa0542580:CDS 40.0%
!! GCAAGAGGGTACTGTAAAAA+TGG + chr4_1:27677630-27677649 Msa0542580:CDS 40.0%
ATGCTTCTGCTGCAATTGTT+GGG + chr4_1:27677679-27677698 Msa0542580:CDS 40.0%
TCTTTCCTTTGCTCACCAAA+AGG + chr4_1:27677828-27677847 Msa0542580:CDS 40.0%
!! CTCTGAAAGTACTATCAGCT+GGG - chr4_1:27678134-27678153 None:intergenic 40.0%
!! TCTCTGAAAGTACTATCAGC+TGG - chr4_1:27678135-27678154 None:intergenic 40.0%
AGCTGATAGTACTTTCAGAG+AGG + chr4_1:27678134-27678153 Msa0542580:CDS 40.0%
! GTGAATACTGACTGCATTGT+TGG + chr4_1:27678195-27678214 Msa0542580:intron 40.0%
! TGTTTTTCCAGAGACAGTGA+AGG + chr4_1:27678342-27678361 Msa0542580:CDS 40.0%
AAAATGTCCTTCACTGTCTC+TGG - chr4_1:27678352-27678371 None:intergenic 40.0%
!! AAACCCTCATTTTGTTTGCG+AGG + chr4_1:27678381-27678400 Msa0542580:CDS 40.0%
TGTTAAGCCTTACAAGGAGA+AGG + chr4_1:27678414-27678433 Msa0542580:intron 40.0%
GTTAAGCCTTACAAGGAGAA+GGG + chr4_1:27678415-27678434 Msa0542580:intron 40.0%
ATCTTCGGTACCAGTTTAAG+TGG + chr4_1:27678570-27678589 Msa0542580:intron 40.0%
TCTTCGGTACCAGTTTAAGT+GGG + chr4_1:27678571-27678590 Msa0542580:intron 40.0%
CCAAATTAGCCCACTTAAAC+TGG - chr4_1:27678583-27678602 None:intergenic 40.0%
!! CCAGTTTAAGTGGGCTAATT+TGG + chr4_1:27678580-27678599 Msa0542580:intron 40.0%
GACCAGTATGATCTTCAACT+TGG + chr4_1:27678782-27678801 Msa0542580:CDS 40.0%
TACATCACATGTTAAGAGGC+AGG - chr4_1:27678853-27678872 None:intergenic 40.0%
AAGCTCTTGAGATTCAACGT+AGG + chr4_1:27678961-27678980 Msa0542580:CDS 40.0%
GATTCAACGTAGGAGGTTAA+TGG + chr4_1:27678971-27678990 Msa0542580:CDS 40.0%
TTCAACGTAGGAGGTTAATG+GGG + chr4_1:27678973-27678992 Msa0542580:CDS 40.0%
AGGAGAATGAACTAGACTTC+CGG - chr4_1:27679045-27679064 None:intergenic 40.0%
!! AGTAATGCTTCTGTTTCTGC+TGG + chr4_1:27679291-27679310 Msa0542580:CDS 40.0%
AGTCAATGGTTATGTTGGCA+AGG + chr4_1:27679323-27679342 Msa0542580:CDS 40.0%
! TTATGTTGGCAAGGAAGTGT+TGG + chr4_1:27679332-27679351 Msa0542580:CDS 40.0%
! GTGTTGGTCAATAGTGAGAA+TGG + chr4_1:27679348-27679367 Msa0542580:CDS 40.0%
GACAAGCTCAAATCATGAAG+AGG + chr4_1:27679398-27679417 Msa0542580:CDS 40.0%
! GAATAAACGCAGTTTGGAGT+TGG + chr4_1:27679652-27679671 Msa0542580:CDS 40.0%
! GCTTTTGTAGGTGAAGCAAA+AGG - chr4_1:27679698-27679717 None:intergenic 40.0%
! AAGTCTCCAACAGCTTTTGT+AGG - chr4_1:27679710-27679729 None:intergenic 40.0%
AAAGCTGTTGGAGACTTAGT+AGG + chr4_1:27679713-27679732 Msa0542580:CDS 40.0%
TTAGTAGGTCCCTTCTCTAA+TGG + chr4_1:27679728-27679747 Msa0542580:CDS 40.0%
CTCTAATGGTCCATTAGAGA+AGG - chr4_1:27679741-27679760 None:intergenic 40.0%
CAAACATCCCAATAGTTCCA+TGG - chr4_1:27679993-27680012 None:intergenic 40.0%
CAGGAAAACTAGATACCGAT+CGG - chr4_1:27680030-27680049 None:intergenic 40.0%
!!! ATCGGTATCTAGTTTTCCTG+AGG + chr4_1:27680030-27680049 Msa0542580:exon 40.0%
!!! ATCTAGTTTTCCTGAGGTTC+AGG + chr4_1:27680036-27680055 Msa0542580:exon 40.0%
CTAGAAAGAGAACTAGACTG+AGG - chr4_1:27680103-27680122 None:intergenic 40.0%
GTGTATGTTTGGTATCACAG+TGG - chr4_1:27680188-27680207 None:intergenic 40.0%
!! ATGATTGATGGTGATGGTGT+TGG - chr4_1:27680536-27680555 None:intergenic 40.0%
AGCAGTTTCAGTAAAGGAAG+TGG + chr4_1:27680603-27680622 Msa0542580:three_prime_UTR 40.0%
GCAGTTTCAGTAAAGGAAGT+GGG + chr4_1:27680604-27680623 Msa0542580:three_prime_UTR 40.0%
CAGTTTCAGTAAAGGAAGTG+GGG + chr4_1:27680605-27680624 Msa0542580:three_prime_UTR 40.0%
! TTTCAAGTCCTTTGTACAGC+TGG + chr4_1:27680760-27680779 Msa0542580:three_prime_UTR 40.0%
ATAATGCTCCAGCTGTACAA+AGG - chr4_1:27680771-27680790 None:intergenic 40.0%
GATGGGGCAGTATAAGTGAA+TGG + chr4_1:27670542-27670561 Msa0542580:five_prime_UTR 45.0%
ACTGCTCCTTCTGCAAAACA+AGG + chr4_1:27670572-27670591 Msa0542580:five_prime_UTR 45.0%
GTGAGCTTAGCTCAGTTTGT+TGG + chr4_1:27673821-27673840 Msa0542580:intron 45.0%
!!! TGATTTTTTGGTAGTGGCCG+GGG - chr4_1:27673883-27673902 None:intergenic 45.0%
CTTTCAACCGAGATAGAGAG+AGG - chr4_1:27674170-27674189 None:intergenic 45.0%
CTAGGGATTGATAGAGGGTT+GGG - chr4_1:27674324-27674343 None:intergenic 45.0%
!! AAAATTTGTTGCGGCGGCTA+GGG - chr4_1:27674341-27674360 None:intergenic 45.0%
!! TAAAATTTGTTGCGGCGGCT+AGG - chr4_1:27674342-27674361 None:intergenic 45.0%
! AGCCGCCGCAACAAATTTTA+CGG + chr4_1:27674342-27674361 Msa0542580:intron 45.0%
!! GACCGTAAAATTTGTTGCGG+CGG - chr4_1:27674347-27674366 None:intergenic 45.0%
! GTCTCCCTCAATGTGTTTTC+CGG + chr4_1:27674364-27674383 Msa0542580:intron 45.0%
! TCTCCCTCAATGTGTTTTCC+GGG + chr4_1:27674365-27674384 Msa0542580:intron 45.0%
! GTTTTGTAGAGGAGATGGAG+GGG - chr4_1:27674560-27674579 None:intergenic 45.0%
!! GGTTTTGTAGAGGAGATGGA+GGG - chr4_1:27674561-27674580 None:intergenic 45.0%
! AGAAAAGCTCTTTTCCGGCA+TGG - chr4_1:27674647-27674666 None:intergenic 45.0%
TGCCTTGTGATCTCTAACAG+CGG - chr4_1:27675041-27675060 None:intergenic 45.0%
TAGAGATCACAAGGCAGTAG+TGG + chr4_1:27675045-27675064 Msa0542580:intron 45.0%
TTAAGTCACAGGAAGGAGAC+TGG - chr4_1:27675453-27675472 None:intergenic 45.0%
CAAAGGTAACCCACAATGGA+TGG - chr4_1:27675585-27675604 None:intergenic 45.0%
! CATCCATTGTGGGTTACCTT+TGG + chr4_1:27675583-27675602 Msa0542580:intron 45.0%
CTTCCAAAGGTAACCCACAA+TGG - chr4_1:27675589-27675608 None:intergenic 45.0%
! TTGTGGGTTACCTTTGGAAG+TGG + chr4_1:27675589-27675608 Msa0542580:intron 45.0%
TTACCCCTAATTGTGGGATG+TGG + chr4_1:27676612-27676631 Msa0542580:intron 45.0%
! TTTGGGATGGTTAGAGAAGG+TGG - chr4_1:27677348-27677367 None:intergenic 45.0%
TAACCATCCCAAACCCTTCT+TGG + chr4_1:27677355-27677374 Msa0542580:CDS 45.0%
AACCATCCCAAACCCTTCTT+GGG + chr4_1:27677356-27677375 Msa0542580:CDS 45.0%
TAGCTACCCAAGAAGGGTTT+GGG - chr4_1:27677365-27677384 None:intergenic 45.0%
TTACCTCCCCAACCATATGA+AGG - chr4_1:27677507-27677526 None:intergenic 45.0%
!! ATCCAAGTGCTGGTTTAGGA+TGG + chr4_1:27677589-27677608 Msa0542580:CDS 45.0%
TTCCATCCTAAACCAGCACT+TGG - chr4_1:27677594-27677613 None:intergenic 45.0%
GATGCTTCTGCTGCAATTGT+TGG + chr4_1:27677678-27677697 Msa0542580:CDS 45.0%
! TCATGCCTTTTGGTGAGCAA+AGG - chr4_1:27677836-27677855 None:intergenic 45.0%
GCTGGGTTAATCATTCCAGT+AGG - chr4_1:27678087-27678106 None:intergenic 45.0%
TTGGTCCTGTTCAAGATGTG+AGG + chr4_1:27678278-27678297 Msa0542580:CDS 45.0%
GGAATCCTCACATCTTGAAC+AGG - chr4_1:27678286-27678305 None:intergenic 45.0%
AACATACGCTTCTGCTGGTA+TGG - chr4_1:27678307-27678326 None:intergenic 45.0%
! TACCAGCAGAAGCGTATGTT+TGG + chr4_1:27678307-27678326 Msa0542580:CDS 45.0%
GAGCCTCGCAAACAAAATGA+GGG - chr4_1:27678387-27678406 None:intergenic 45.0%
AGTCCCAACTCAATACCATC+CGG - chr4_1:27678524-27678543 None:intergenic 45.0%
CTAGCATCAACAAGTCCAGT+TGG - chr4_1:27678761-27678780 None:intergenic 45.0%
ACACTGAAGACATGTTGTGG+AGG + chr4_1:27678910-27678929 Msa0542580:CDS 45.0%
CTCTTGAGATTCAACGTAGG+AGG + chr4_1:27678964-27678983 Msa0542580:CDS 45.0%
AGAATGAACTAGACTTCCGG+TGG - chr4_1:27679042-27679061 None:intergenic 45.0%
GCTGGTCAACAATCAGTCAA+TGG + chr4_1:27679309-27679328 Msa0542580:CDS 45.0%
GCTTCACCTACAAAAGCTGT+TGG + chr4_1:27679701-27679720 Msa0542580:CDS 45.0%
! GATGGCAGTACCTTGGTAAT+TGG - chr4_1:27679868-27679887 None:intergenic 45.0%
GAAATGTGATGGCAGTACCT+TGG - chr4_1:27679875-27679894 None:intergenic 45.0%
! CTTAGGTTTTCTTCTGCCCA+TGG + chr4_1:27679973-27679992 Msa0542580:intron 45.0%
TCTTCTGCCCATGGAACTAT+TGG + chr4_1:27679982-27680001 Msa0542580:CDS 45.0%
CTTCTGCCCATGGAACTATT+GGG + chr4_1:27679983-27680002 Msa0542580:CDS 45.0%
GGAACTATTGGGATGTTTGC+CGG + chr4_1:27679994-27680013 Msa0542580:CDS 45.0%
TAGGAAGTAGCTCCTTTCAC+AGG + chr4_1:27680729-27680748 Msa0542580:three_prime_UTR 45.0%
!!! ATTCTTTTTTTTTTTTTAAA+TGG + chr4_1:27673690-27673709 Msa0542580:intron 5.0%
!!! TTCTTTTTTTTTTTTTAAAT+GGG + chr4_1:27673691-27673710 Msa0542580:intron 5.0%
!!! TTAAAAATGATAAATTTTAA+AGG - chr4_1:27675551-27675570 None:intergenic 5.0%
GCTCCTTCTGCAAAACAAGG+CGG + chr4_1:27670575-27670594 Msa0542580:five_prime_UTR 50.0%
TGCAAAACAAGGCGGTGGTT+TGG + chr4_1:27670583-27670602 Msa0542580:five_prime_UTR 50.0%
AAAATACCCGTGCATCCGCA+CGG + chr4_1:27670839-27670858 Msa0542580:intron 50.0%
AACTGAGCTAAGCTCACGAG+AGG - chr4_1:27673818-27673837 None:intergenic 50.0%
GCTAGGGATTGATAGAGGGT+TGG - chr4_1:27674325-27674344 None:intergenic 50.0%
GAGCCCGGAAAACACATTGA+GGG - chr4_1:27674371-27674390 None:intergenic 50.0%
!! GGGTTTTGTAGAGGAGATGG+AGG - chr4_1:27674562-27674581 None:intergenic 50.0%
CAAGATCGGACTACCTTCGT+CGG + chr4_1:27674594-27674613 Msa0542580:intron 50.0%
! AAAGCTCTTTTCCGGCATGG+TGG - chr4_1:27674644-27674663 None:intergenic 50.0%
TCCCGCTGTTAGAGATCACA+AGG + chr4_1:27675036-27675055 Msa0542580:intron 50.0%
GCCTTGTGATCTCTAACAGC+GGG - chr4_1:27675040-27675059 None:intergenic 50.0%
CTGCCACATCCCACAATTAG+GGG - chr4_1:27676618-27676637 None:intergenic 50.0%
GCTGCCACATCCCACAATTA+GGG - chr4_1:27676619-27676638 None:intergenic 50.0%
ATGTGGCAGCCAATGAGGTT+AGG + chr4_1:27676629-27676648 Msa0542580:intron 50.0%
TGTGGCAGCCAATGAGGTTA+GGG + chr4_1:27676630-27676649 Msa0542580:intron 50.0%
! GATGGAGGAGTTGAAGGTGT+TGG - chr4_1:27677255-27677274 None:intergenic 50.0%
!! GAAGGTGATGGAGGAGTTGA+AGG - chr4_1:27677261-27677280 None:intergenic 50.0%
GGATGGTTAGAGAAGGTGGA+AGG - chr4_1:27677344-27677363 None:intergenic 50.0%
! GGGTTTGGGATGGTTAGAGA+AGG - chr4_1:27677351-27677370 None:intergenic 50.0%
TACCCAAGAAGGGTTTGGGA+TGG - chr4_1:27677361-27677380 None:intergenic 50.0%
GTAGCTACCCAAGAAGGGTT+TGG - chr4_1:27677366-27677385 None:intergenic 50.0%
GATCCTTCATATGGTTGGGG+AGG + chr4_1:27677501-27677520 Msa0542580:CDS 50.0%
!! GAGGATCCAAGTGCTGGTTT+AGG + chr4_1:27677585-27677604 Msa0542580:CDS 50.0%
! TGCTGCTGCTTCTCAACTCA+TGG + chr4_1:27677797-27677816 Msa0542580:CDS 50.0%
AGCCAAACATACGCTTCTGC+TGG - chr4_1:27678312-27678331 None:intergenic 50.0%
CGAGCCTCGCAAACAAAATG+AGG - chr4_1:27678388-27678407 None:intergenic 50.0%
ATTCGTGTCCGTAACCCACT+TGG + chr4_1:27678493-27678512 Msa0542580:intron 50.0%
TTCGTGTCCGTAACCCACTT+GGG + chr4_1:27678494-27678513 Msa0542580:intron 50.0%
! TTGGCCGGATGGTATTGAGT+TGG + chr4_1:27678517-27678536 Msa0542580:intron 50.0%
! TGGCCGGATGGTATTGAGTT+GGG + chr4_1:27678518-27678537 Msa0542580:intron 50.0%
CTGAAGACATGTTGTGGAGG+AGG + chr4_1:27678913-27678932 Msa0542580:CDS 50.0%
AGACATGTTGTGGAGGAGGA+AGG + chr4_1:27678917-27678936 Msa0542580:CDS 50.0%
AACTCGGAGCTTCTGCGAAA+AGG - chr4_1:27679107-27679126 None:intergenic 50.0%
AGAAGCTCCGAGTTCTCAGA+GGG + chr4_1:27679113-27679132 Msa0542580:CDS 50.0%
GGTGAAGCAAAAGGGCTATC+AGG - chr4_1:27679689-27679708 None:intergenic 50.0%
!! GATGGTGTTGGCATCTTTGG+TGG - chr4_1:27680524-27680543 None:intergenic 50.0%
!! GGTGATGGTGTTGGCATCTT+TGG - chr4_1:27680527-27680546 None:intergenic 50.0%
TTCAGTAAAGGAAGTGGGGC+AGG + chr4_1:27680609-27680628 Msa0542580:three_prime_UTR 50.0%
!!! CCACCGCCTTGTTTTGCAGA+AGG - chr4_1:27670581-27670600 None:intergenic 55.0%
CCTTCTGCAAAACAAGGCGG+TGG + chr4_1:27670578-27670597 Msa0542580:five_prime_UTR 55.0%
AAATACCCGTGCATCCGCAC+GGG + chr4_1:27670840-27670859 Msa0542580:intron 55.0%
! AAGGTCTGGGGTTCAAACCC+CGG + chr4_1:27673863-27673882 Msa0542580:intron 55.0%
GGCGGCTAGGGATTGATAGA+GGG - chr4_1:27674329-27674348 None:intergenic 55.0%
CGAGCCCGGAAAACACATTG+AGG - chr4_1:27674372-27674391 None:intergenic 55.0%
GGTTGTGGCTGAAAGGTGGT+CGG - chr4_1:27675432-27675451 None:intergenic 55.0%
! GACTGGTTGTGGCTGAAAGG+TGG - chr4_1:27675436-27675455 None:intergenic 55.0%
! GGAGACTGGTTGTGGCTGAA+AGG - chr4_1:27675439-27675458 None:intergenic 55.0%
! CACAGGAAGGAGACTGGTTG+TGG - chr4_1:27675447-27675466 None:intergenic 55.0%
GGCTGCCACATCCCACAATT+AGG - chr4_1:27676620-27676639 None:intergenic 55.0%
!! GGAGGAGTTGAAGGTGTTGG+TGG - chr4_1:27677252-27677271 None:intergenic 55.0%
!! GGTTCTGAGGATCCAAGTGC+TGG + chr4_1:27677579-27677598 Msa0542580:CDS 55.0%
TGTCCGTAACCCACTTGGGT+TGG + chr4_1:27678498-27678517 Msa0542580:intron 55.0%
TAGGAAGCAGCTTCAGCAGC+AGG + chr4_1:27678712-27678731 Msa0542580:intron 55.0%
AGGAAGCAGCTTCAGCAGCA+GGG + chr4_1:27678713-27678732 Msa0542580:intron 55.0%
AGTCCAGTTGGAGTGCGACA+CGG - chr4_1:27678749-27678768 None:intergenic 55.0%
! TGGAAAGTGCGCGTTGGTGT+TGG - chr4_1:27679022-27679041 None:intergenic 55.0%
CAGAAGCTCCGAGTTCTCAG+AGG + chr4_1:27679112-27679131 Msa0542580:CDS 55.0%
ATTGGGATGTTTGCCGGCAC+CGG + chr4_1:27680000-27680019 Msa0542580:CDS 55.0%
CTAGATACCGATCGGTCCAC+CGG - chr4_1:27680022-27680041 None:intergenic 55.0%
!! GGTGTTGGCATCTTTGGTGG+TGG - chr4_1:27680521-27680540 None:intergenic 55.0%
CTCAGTAGTTACTGCCCCAC+AGG + chr4_1:27680666-27680685 Msa0542580:three_prime_UTR 55.0%
CGGCGGCTAGGGATTGATAG+AGG - chr4_1:27674330-27674349 None:intergenic 60.0%
GGAGCTTGCAACCACCATGC+CGG + chr4_1:27674630-27674649 Msa0542580:intron 60.0%
GTGGGATGTGGCAGCCAATG+AGG + chr4_1:27676624-27676643 Msa0542580:intron 60.0%
!! CGGCCAACCCAAGTGGGTTA+CGG - chr4_1:27678504-27678523 None:intergenic 60.0%
!! CGTAACCCACTTGGGTTGGC+CGG + chr4_1:27678502-27678521 Msa0542580:intron 60.0%
ACCATCCGGCCAACCCAAGT+GGG - chr4_1:27678510-27678529 None:intergenic 60.0%
TACCATCCGGCCAACCCAAG+TGG - chr4_1:27678511-27678530 None:intergenic 60.0%
TCACCGTGTCGCACTCCAAC+TGG + chr4_1:27678743-27678762 Msa0542580:CDS 60.0%
CACCAACGCGCACTTTCCAC+CGG + chr4_1:27679023-27679042 Msa0542580:CDS 60.0%
! TTCCGGTGGAAAGTGCGCGT+TGG - chr4_1:27679028-27679047 None:intergenic 60.0%
CCGATCAACCGGTACCCGTG+CGG - chr4_1:27670857-27670876 None:intergenic 65.0%
!! CCGCACGGGTACCGGTTGAT+CGG + chr4_1:27670854-27670873 Msa0542580:intron 65.0%
!! CGCACGGGTACCGGTTGATC+GGG + chr4_1:27670855-27670874 Msa0542580:intron 65.0%
!! GCACGGGTACCGGTTGATCG+GGG + chr4_1:27670856-27670875 Msa0542580:intron 65.0%
!! ACCCACTTGGGTTGGCCGGA+TGG + chr4_1:27678506-27678525 Msa0542580:intron 65.0%
CGGTACCCGTGCGGATGCAC+GGG - chr4_1:27670848-27670867 None:intergenic 70.0%
CCGGTACCCGTGCGGATGCA+CGG - chr4_1:27670849-27670868 None:intergenic 70.0%
CCGTGCATCCGCACGGGTAC+CGG + chr4_1:27670846-27670865 Msa0542580:intron 70.0%
CTTCGTCGGTGACCACCGCG+CGG + chr4_1:27674608-27674627 Msa0542580:intron 70.0%
TTCGTCGGTGACCACCGCGC+GGG + chr4_1:27674609-27674628 Msa0542580:intron 70.0%
GGTGGTTGCAAGCTCCCGCG+CGG - chr4_1:27674626-27674645 None:intergenic 70.0%
! GGGATGTTTGCCGGCACCGG+TGG + chr4_1:27680003-27680022 Msa0542580:CDS 70.0%
ACCGATCGGTCCACCGGTGC+CGG - chr4_1:27680016-27680035 None:intergenic 70.0%
CGCGCGGTGGTCACCGACGA+AGG - chr4_1:27674610-27674629 None:intergenic 75.0%
GGTTGCAAGCTCCCGCGCGG+TGG - chr4_1:27674623-27674642 None:intergenic 75.0%
!! GCCGGCACCGGTGGACCGAT+CGG + chr4_1:27680012-27680031 Msa0542580:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 27670427 27681113 27670427 ID=Msa0542580;Name=Msa0542580
chr4_1 mRNA 27670427 27681113 27670427 ID=Msa0542580-mRNA-1;Parent=Msa0542580;Name=Msa0542580-mRNA-1;_AED=0.08;_eAED=0.08;_QI=481|0.8|0.72|1|0.7|0.54|11|642|664
chr4_1 exon 27670427 27670732 27670427 ID=Msa0542580-mRNA-1:exon:7443;Parent=Msa0542580-mRNA-1
chr4_1 exon 27676867 27677898 27676867 ID=Msa0542580-mRNA-1:exon:7444;Parent=Msa0542580-mRNA-1
chr4_1 exon 27677996 27678178 27677996 ID=Msa0542580-mRNA-1:exon:7445;Parent=Msa0542580-mRNA-1
chr4_1 exon 27678273 27678408 27678273 ID=Msa0542580-mRNA-1:exon:7446;Parent=Msa0542580-mRNA-1
chr4_1 exon 27678719 27678803 27678719 ID=Msa0542580-mRNA-1:exon:7447;Parent=Msa0542580-mRNA-1
chr4_1 exon 27678892 27679134 27678892 ID=Msa0542580-mRNA-1:exon:7448;Parent=Msa0542580-mRNA-1
chr4_1 exon 27679262 27679439 27679262 ID=Msa0542580-mRNA-1:exon:7449;Parent=Msa0542580-mRNA-1
chr4_1 exon 27679628 27679876 27679628 ID=Msa0542580-mRNA-1:exon:7450;Parent=Msa0542580-mRNA-1
chr4_1 exon 27679978 27680057 27679978 ID=Msa0542580-mRNA-1:exon:7451;Parent=Msa0542580-mRNA-1
chr4_1 exon 27680449 27680458 27680449 ID=Msa0542580-mRNA-1:exon:7452;Parent=Msa0542580-mRNA-1
chr4_1 exon 27680498 27681113 27680498 ID=Msa0542580-mRNA-1:exon:7453;Parent=Msa0542580-mRNA-1
chr4_1 five_prime_UTR 27670427 27670732 27670427 ID=Msa0542580-mRNA-1:five_prime_utr;Parent=Msa0542580-mRNA-1
chr4_1 five_prime_UTR 27676867 27677041 27676867 ID=Msa0542580-mRNA-1:five_prime_utr;Parent=Msa0542580-mRNA-1
chr4_1 CDS 27677042 27677898 27677042 ID=Msa0542580-mRNA-1:cds;Parent=Msa0542580-mRNA-1
chr4_1 CDS 27677996 27678178 27677996 ID=Msa0542580-mRNA-1:cds;Parent=Msa0542580-mRNA-1
chr4_1 CDS 27678273 27678408 27678273 ID=Msa0542580-mRNA-1:cds;Parent=Msa0542580-mRNA-1
chr4_1 CDS 27678719 27678803 27678719 ID=Msa0542580-mRNA-1:cds;Parent=Msa0542580-mRNA-1
chr4_1 CDS 27678892 27679134 27678892 ID=Msa0542580-mRNA-1:cds;Parent=Msa0542580-mRNA-1
chr4_1 CDS 27679262 27679439 27679262 ID=Msa0542580-mRNA-1:cds;Parent=Msa0542580-mRNA-1
chr4_1 CDS 27679628 27679876 27679628 ID=Msa0542580-mRNA-1:cds;Parent=Msa0542580-mRNA-1
chr4_1 CDS 27679978 27680041 27679978 ID=Msa0542580-mRNA-1:cds;Parent=Msa0542580-mRNA-1
chr4_1 three_prime_UTR 27680042 27680057 27680042 ID=Msa0542580-mRNA-1:three_prime_utr;Parent=Msa0542580-mRNA-1
chr4_1 three_prime_UTR 27680449 27680458 27680449 ID=Msa0542580-mRNA-1:three_prime_utr;Parent=Msa0542580-mRNA-1
chr4_1 three_prime_UTR 27680498 27681113 27680498 ID=Msa0542580-mRNA-1:three_prime_utr;Parent=Msa0542580-mRNA-1
Gene Sequence

>Msa0542580

ATGGATGGTTATGAAGCAACTAAGATGGTGTTTTCAAGGATCAAAAACATGGACCCTGAAAATGCATCAAATATCATGGGTTTGCTTCTTAGTAAAGAGCATGGTGAGAAAGAAATGATAAGATTAGCATTAAGTCCTGAATCACTTATTCATTCAGTGATTTTCAAAGCTAGAAAAGAGTTAGGATTACCTTGTTCTAATAACTCTCCACCAACACCTTCAACTCCTCCATCACCTTCACCTAATTTCCTTTCAAGGCAAAATTCATCAACTTCTTCAAGGCTTAGTAGTGGTTTCAACCTTCCACCTTCTCTAACCATCCCAAACCCTTCTTGGGTAGCTACTACTATGTCCATGTCTGATCAGTTTCAAAACCATGATGATTTGGTTGTTGGTGGTTCAGATCCAATTGATGATTTCCAACTCCAAGACCAACTTTCTTTCTTGAATGATGGTTCTGATCCTTCATATGGTTGGGGAGGTAATTCTTCTCTTCATAGGAGAAGTTGTTCTGTCAATGATGCTTCTTATTTAGCTGGTTCTGAGGATCCAAGTGCTGGTTTAGGATGGAAGCCATGTCTTTATTTTGCAAGAGGGTACTGTAAAAATGGTACTAGTTGTAGGTTTCTTCATGGTGATGCTTCTGCTGCAATTGTTGGGTCTCCTAACAAGATTGAAAATATGATGGATCAGTATCATCATCATGAACTCTTGAGATCTAAATCTTCTCATCAACAAAGATTGGCTGCTGCTGCTGCTGCTGCTTCTCAACTCATGGCTTCTAACTCTTTCCTTTGCTCACCAAAAGGCATGAATTTCCTTTTACAGCAGCAACAAAATCAAAATGATACTCAAAGGGCAGCTGTTGCAGCTTTAATGATGAATGAGGAGTTGCACAAATTTGGAAGATCAAGGCTTGAAAGAAATGATTTTTCTTTGTACAGTCCTACTGGAATGATTAACCCAGCTTCAAGACAAATCTACTTGACTTTCCCAGCTGATAGTACTTTCAGAGAGGAAGATGTTTCTGAATACTTCAGCAAATTTGGTCCTGTTCAAGATGTGAGGATTCCATACCAGCAGAAGCGTATGTTTGGCTTTGTTACATTTGTTTTTCCAGAGACAGTGAAGGACATTTTGTCTAAAGGAAACCCTCATTTTGTTTGCGAGGCTCGACAGCTTCAGCAGCAGGGAGATTTTTCACCGTGTCGCACTCCAACTGGACTTGTTGATGCTAGAGACCAGTATGATCTTCAACTTGCTGAAAGAATGTTCTATAACACTGAAGACATGTTGTGGAGGAGGAAGGAGCAAGCTGAGTTGCAACAACAAGCTCTTGAGATTCAACGTAGGAGGTTAATGGGGCTGCAACTTCTTGATATCAAGAACCAACACCAACGCGCACTTTCCACCGGAAGTCTAGTTCATTCTCCTACTCAATCTCCTAACATGTTCGATCAGAATCTTGTTCTTCCTTTTCGCAGAAGCTCCGAGTTCTCAGAGGTCATTAGTTCAAGTTCTGCTTCAGCTCATAGTAATGCTTCTGTTTCTGCTGGTCAACAATCAGTCAATGGTTATGTTGGCAAGGAAGTGTTGGTCAATAGTGAGAATGGAAACAGTGAAAGTAATGAAAATGGCAAGACAAGCTCAAATCATGAAGAGGAGCTTAATTTGCATGAATGGGACTTTGTATTTAAATGGTTAATGAATAAACGCAGTTTGGAGTTGGAGCATAATCTACCTGATAGCCCTTTTGCTTCACCTACAAAAGCTGTTGGAGACTTAGTAGGTCCCTTCTCTAATGGACCATTAGAGACCATTGATTCAGATACATCTACTAGCTCTAAATTTGGCACTAGTAAATTACTACCAACTTCAGCTTCTCTTGATATGGGATCTTTTAAACCATATAATAACTGCCAATTACCAAGGTTTTCTTCTGCCCATGGAACTATTGGGATGTTTGCCGGCACCGGTGGACCGATCGGTATCTAG
Protein sequence

>Msa0542580

MDGYEATKMVFSRIKNMDPENASNIMGLLLSKEHGEKEMIRLALSPESLIHSVIFKARKELGLPCSNNSPPTPSTPPSPSPNFLSRQNSSTSSRLSSGFNLPPSLTIPNPSWVATTMSMSDQFQNHDDLVVGGSDPIDDFQLQDQLSFLNDGSDPSYGWGGNSSLHRRSCSVNDASYLAGSEDPSAGLGWKPCLYFARGYCKNGTSCRFLHGDASAAIVGSPNKIENMMDQYHHHELLRSKSSHQQRLAAAAAAASQLMASNSFLCSPKGMNFLLQQQQNQNDTQRAAVAALMMNEELHKFGRSRLERNDFSLYSPTGMINPASRQIYLTFPADSTFREEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVFPETVKDILSKGNPHFVCEARQLQQQGDFSPCRTPTGLVDARDQYDLQLAERMFYNTEDMLWRRKEQAELQQQALEIQRRRLMGLQLLDIKNQHQRALSTGSLVHSPTQSPNMFDQNLVLPFRRSSEFSEVISSSSASAHSNASVSAGQQSVNGYVGKEVLVNSENGNSESNENGKTSSNHEEELNLHEWDFVFKWLMNKRSLELEHNLPDSPFASPTKAVGDLVGPFSNGPLETIDSDTSTSSKFGTSKLLPTSASLDMGSFKPYNNCQLPRFSSAHGTIGMFAGTGGPIGI*