Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0676910 | XP_003605843.1 | 91.751 | 691 | 26 | 8 | 1 | 685 | 1 | 666 | 0.0 | 1194 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0676910 | sp|Q0D3J9|C3H53_ORYSJ | 43.176 | 762 | 266 | 28 | 1 | 675 | 1 | 682 | 1.81e-148 | 450 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0676910 | G7JUR4 | 91.751 | 691 | 26 | 8 | 1 | 685 | 1 | 666 | 0.0 | 1194 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0637480 | Msa0676910 | 0.854533 | 1.155610e-61 | -8.615850e-47 |
| Msa0542580 | Msa0676910 | 0.807167 | 5.769124e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0676910 | MtrunA17_Chr4g0020571 | 91.751 | 691 | 26 | 8 | 1 | 685 | 1 | 666 | 0.0 | 1194 |
| Msa0676910 | MtrunA17_Chr3g0090551 | 61.601 | 737 | 195 | 24 | 1 | 685 | 1 | 701 | 0.0 | 749 |
| Msa0676910 | MtrunA17_Chr5g0396381 | 40.084 | 716 | 328 | 23 | 1 | 651 | 1 | 680 | 2.22e-132 | 405 |
| Msa0676910 | MtrunA17_Chr5g0445571 | 31.801 | 522 | 278 | 16 | 1 | 490 | 1 | 476 | 1.39e-57 | 204 |
| Msa0676910 | MtrunA17_Chr3g0101151 | 31.471 | 537 | 237 | 14 | 1 | 490 | 1 | 453 | 1.15e-52 | 190 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0676910 | AT3G51950.1 | 41.703 | 693 | 243 | 25 | 1 | 685 | 1 | 540 | 4.66e-133 | 403 |
| Msa0676910 | AT3G51950.3 | 41.703 | 693 | 243 | 25 | 1 | 685 | 1 | 540 | 4.66e-133 | 403 |
| Msa0676910 | AT3G51950.2 | 41.703 | 693 | 243 | 25 | 1 | 685 | 1 | 540 | 4.66e-133 | 403 |
| Msa0676910 | AT3G51950.4 | 41.703 | 693 | 243 | 25 | 1 | 685 | 1 | 540 | 4.66e-133 | 403 |
| Msa0676910 | AT3G21100.4 | 38.769 | 650 | 284 | 26 | 1 | 613 | 1 | 573 | 5.34e-107 | 337 |
| Msa0676910 | AT3G21100.3 | 38.769 | 650 | 284 | 26 | 1 | 613 | 1 | 573 | 5.34e-107 | 337 |
| Msa0676910 | AT3G21100.2 | 38.923 | 650 | 282 | 27 | 1 | 613 | 1 | 572 | 5.21e-106 | 335 |
| Msa0676910 | AT3G21100.1 | 38.923 | 650 | 282 | 27 | 1 | 613 | 1 | 572 | 5.21e-106 | 335 |
| Msa0676910 | AT5G12440.4 | 44.776 | 402 | 164 | 14 | 130 | 505 | 160 | 529 | 3.28e-92 | 300 |
| Msa0676910 | AT5G12440.11 | 44.776 | 402 | 164 | 14 | 130 | 505 | 160 | 529 | 3.28e-92 | 300 |
| Msa0676910 | AT5G12440.12 | 44.776 | 402 | 164 | 14 | 130 | 505 | 160 | 529 | 3.28e-92 | 300 |
| Msa0676910 | AT5G12440.7 | 44.776 | 402 | 164 | 14 | 130 | 505 | 160 | 529 | 3.28e-92 | 300 |
| Msa0676910 | AT5G12440.1 | 44.776 | 402 | 164 | 14 | 130 | 505 | 160 | 529 | 3.28e-92 | 300 |
| Msa0676910 | AT5G12440.9 | 44.776 | 402 | 164 | 14 | 130 | 505 | 160 | 529 | 3.28e-92 | 300 |
| Msa0676910 | AT5G12440.2 | 44.776 | 402 | 164 | 14 | 130 | 505 | 160 | 529 | 3.28e-92 | 300 |
| Msa0676910 | AT5G12440.3 | 44.776 | 402 | 164 | 14 | 130 | 505 | 191 | 560 | 8.47e-92 | 300 |
| Msa0676910 | AT5G12440.10 | 44.776 | 402 | 164 | 14 | 130 | 505 | 191 | 560 | 8.47e-92 | 300 |
| Msa0676910 | AT5G12440.8 | 44.776 | 402 | 164 | 14 | 130 | 505 | 191 | 560 | 8.47e-92 | 300 |
| Msa0676910 | AT5G12440.5 | 44.776 | 402 | 164 | 14 | 130 | 505 | 191 | 560 | 8.47e-92 | 300 |
| Msa0676910 | AT5G12440.6 | 44.776 | 402 | 164 | 14 | 130 | 505 | 191 | 560 | 8.47e-92 | 300 |
| Msa0676910 | AT3G63450.3 | 48.264 | 288 | 84 | 10 | 233 | 520 | 86 | 308 | 2.08e-67 | 227 |
| Msa0676910 | AT3G63450.3 | 61.111 | 72 | 28 | 0 | 1 | 72 | 1 | 72 | 2.73e-19 | 91.3 |
| Msa0676910 | AT3G63450.4 | 48.264 | 288 | 84 | 10 | 233 | 520 | 86 | 308 | 2.08e-67 | 227 |
| Msa0676910 | AT3G63450.4 | 61.111 | 72 | 28 | 0 | 1 | 72 | 1 | 72 | 2.73e-19 | 91.3 |
| Msa0676910 | AT3G63450.5 | 48.264 | 288 | 84 | 10 | 233 | 520 | 86 | 308 | 2.08e-67 | 227 |
| Msa0676910 | AT3G63450.5 | 61.111 | 72 | 28 | 0 | 1 | 72 | 1 | 72 | 2.73e-19 | 91.3 |
| Msa0676910 | AT3G63450.2 | 47.917 | 288 | 83 | 9 | 233 | 520 | 86 | 306 | 2.51e-67 | 227 |
| Msa0676910 | AT3G63450.2 | 61.111 | 72 | 28 | 0 | 1 | 72 | 1 | 72 | 2.86e-19 | 91.3 |
| Msa0676910 | AT3G63450.1 | 47.917 | 288 | 83 | 9 | 233 | 520 | 86 | 306 | 2.51e-67 | 227 |
| Msa0676910 | AT3G63450.1 | 61.111 | 72 | 28 | 0 | 1 | 72 | 1 | 72 | 2.86e-19 | 91.3 |
| Msa0676910 | AT3G63450.7 | 48.264 | 288 | 84 | 10 | 233 | 520 | 86 | 308 | 9.67e-67 | 224 |
| Msa0676910 | AT3G63450.7 | 61.111 | 72 | 28 | 0 | 1 | 72 | 1 | 72 | 1.52e-19 | 91.7 |
| Msa0676910 | AT3G63450.6 | 52.155 | 232 | 61 | 5 | 289 | 520 | 17 | 198 | 1.69e-65 | 218 |
| Msa0676910 | AT1G51520.1 | 33.939 | 495 | 235 | 21 | 1 | 484 | 1 | 414 | 1.03e-60 | 209 |
| Msa0676910 | AT1G51520.2 | 31.098 | 656 | 296 | 28 | 1 | 644 | 1 | 512 | 4.86e-60 | 210 |
| Msa0676910 | AT2G05160.3 | 33.937 | 442 | 205 | 15 | 1 | 402 | 1 | 395 | 1.27e-50 | 184 |
| Msa0676910 | AT2G05160.2 | 33.710 | 442 | 206 | 15 | 1 | 402 | 1 | 395 | 1.33e-50 | 185 |
| Msa0676910 | AT2G05160.1 | 33.710 | 442 | 206 | 15 | 1 | 402 | 1 | 395 | 1.33e-50 | 185 |
| Msa0676910 | AT3G52980.1 | 33.499 | 403 | 207 | 16 | 1 | 382 | 1 | 363 | 1.35e-38 | 147 |
Find 188 sgRNAs with CRISPR-Local
Find 318 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAAACACAATGGCTTATT+TGG | 0.135566 | 4_4:+28336262 | None:intergenic |
| AACTTCAGCTTCTCTTGATA+TGG | 0.183404 | 4_4:-28332954 | Msa0676910:CDS |
| AATGAGGAGTTGCACAAATT+TGG | 0.207039 | 4_4:-28334753 | Msa0676910:CDS |
| TATCCTTTCATTTCATATAT+TGG | 0.224654 | 4_4:-28336191 | Msa0676910:five_prime_UTR |
| GGTGATGGTGTTGGCATCTT+TGG | 0.252432 | 4_4:+28332244 | None:intergenic |
| GGTAATTGGCAGTTATTATA+TGG | 0.254267 | 4_4:+28332920 | None:intergenic |
| ATATATTGGATTAAGAAATA+TGG | 0.257306 | 4_4:-28336177 | Msa0676910:intron |
| GGTGCAATAACTTACTTATC+TGG | 0.260574 | 4_4:+28334329 | None:intergenic |
| AAAAGGAAATTCATGCCTTT+TGG | 0.282854 | 4_4:+28334931 | None:intergenic |
| TTCTGATCCTTCATATGGTT+GGG | 0.287354 | 4_4:-28335274 | Msa0676910:CDS |
| CACACAAAGGTATTATTATT+AGG | 0.288861 | 4_4:-28332061 | Msa0676910:three_prime_UTR |
| CTTCATAACCATCCATGATT+TGG | 0.292152 | 4_4:+28335736 | None:intergenic |
| AAAGAAACTTTACTTGTAAT+AGG | 0.300194 | 4_4:-28335838 | Msa0676910:five_prime_UTR |
| GTTTCAAAACCATGATGATT+TGG | 0.301307 | 4_4:-28335364 | Msa0676910:CDS |
| TAACCATCCCAAACCCTTCT+TGG | 0.303956 | 4_4:-28335416 | Msa0676910:CDS |
| TCTTCTGCCCATGGAACTAT+TGG | 0.306365 | 4_4:-28332789 | Msa0676910:CDS |
| AAGATGTTTCCGAATACTTC+AGG | 0.317374 | 4_4:-28334617 | Msa0676910:intron |
| GATTCAACGTAGGAGGTTAA+TGG | 0.322041 | 4_4:-28333803 | Msa0676910:CDS |
| GATGCTTCTGCTGCAATTGT+TGG | 0.328859 | 4_4:-28335093 | Msa0676910:CDS |
| GTACAAAGGACTTGAAATTA+TGG | 0.336774 | 4_4:+28332017 | None:intergenic |
| GAGGATCCAAGTGCTGGTTT+AGG | 0.351353 | 4_4:-28335186 | Msa0676910:CDS |
| AAAATGTCCTTCACCGTCTC+TGG | 0.353780 | 4_4:+28334425 | None:intergenic |
| ACATCTACTAGCTCTAAATT+TGG | 0.353969 | 4_4:-28332995 | Msa0676910:CDS |
| GGAACTATTGGGATGTTTGC+CGG | 0.357443 | 4_4:-28332777 | Msa0676910:CDS |
| AATGATGCTTCTTATTTAGC+TGG | 0.358770 | 4_4:-28335213 | Msa0676910:CDS |
| ATGATTCATGTGGTTTGTAT+AGG | 0.362197 | 4_4:-28334081 | Msa0676910:CDS |
| CTAAATAAACCTGAAGTATT+CGG | 0.364140 | 4_4:+28334608 | None:intergenic |
| CAACTTTCTTTCTTGAATGA+TGG | 0.364655 | 4_4:-28335297 | Msa0676910:CDS |
| TGGGAGAGAGAAGAAAATAT+TGG | 0.365756 | 4_4:-28336436 | Msa0676910:five_prime_UTR |
| CTTCACCTAATTTCCTTTCA+AGG | 0.369048 | 4_4:-28335494 | Msa0676910:CDS |
| CTTCTGCCCATGGAACTATT+GGG | 0.370221 | 4_4:-28332788 | Msa0676910:CDS |
| ACTAGTTGTAGGTTTCTTCA+TGG | 0.371986 | 4_4:-28335117 | Msa0676910:CDS |
| ATTCAACGTAGGAGGTTAAT+GGG | 0.383287 | 4_4:-28333802 | Msa0676910:CDS |
| GGGGAAGCAAAAGGGCTATC+AGG | 0.385669 | 4_4:+28333085 | None:intergenic |
| TTCAAAGCTAGAAAAGAGTT+AGG | 0.385736 | 4_4:-28335567 | Msa0676910:CDS |
| TCACCGTGTCGCACTCCAAC+TGG | 0.388538 | 4_4:-28334031 | Msa0676910:CDS |
| TTAGTAGGTCCCTTCTCTAA+TGG | 0.390520 | 4_4:-28333043 | Msa0676910:CDS |
| TTTCAAGTCCTTTGTACAGC+TGG | 0.394869 | 4_4:-28332011 | Msa0676910:three_prime_UTR |
| TGCAAAACAAGGCGGTGGTT+TGG | 0.397401 | 4_4:-28336305 | Msa0676910:five_prime_UTR |
| AAAATTCATCAACTTCTTCA+AGG | 0.400418 | 4_4:-28335470 | Msa0676910:CDS |
| ACTGAATGAATAAGTGATTC+AGG | 0.400741 | 4_4:+28335594 | None:intergenic |
| ATGCTTCTGCTGCAATTGTT+GGG | 0.402017 | 4_4:-28335092 | Msa0676910:CDS |
| CCATTGTGTTTGTTTGTTTG+AGG | 0.403765 | 4_4:-28336253 | Msa0676910:five_prime_UTR |
| TGAAAATGCATCAAATATCA+TGG | 0.407202 | 4_4:-28335673 | Msa0676910:CDS |
| AGATTCTGATCGAACATGTT+AGG | 0.417465 | 4_4:+28333700 | None:intergenic |
| TCCTCTTCATGACTTGAGCT+TGG | 0.419998 | 4_4:+28333378 | None:intergenic |
| ATCTTCTCATCAACAAAGAT+TGG | 0.420103 | 4_4:-28335007 | Msa0676910:CDS |
| GTTCTGATCCTTCATATGGT+TGG | 0.420579 | 4_4:-28335275 | Msa0676910:CDS |
| TACCAGCAGAAGCGTATGTT+TGG | 0.422823 | 4_4:-28334467 | Msa0676910:CDS |
| AACCATGATGATTTGGTTGT+TGG | 0.425653 | 4_4:-28335357 | Msa0676910:CDS |
| ACCAATCGGTCCACCGGTGC+CGG | 0.425894 | 4_4:+28332758 | None:intergenic |
| AAGAAAGTTGGTCTTGGAGT+TGG | 0.426471 | 4_4:+28335310 | None:intergenic |
| AAGTAGATTTGTCTTGAAGC+TGG | 0.427274 | 4_4:+28334672 | None:intergenic |
| TCTGAATCAATGGTCTCTAA+TGG | 0.428441 | 4_4:+28333019 | None:intergenic |
| AGGAGCTTAATTTGCATGAA+TGG | 0.429817 | 4_4:-28333359 | Msa0676910:intron |
| TAGCTACCCAAGAAGGGTTT+GGG | 0.430474 | 4_4:+28335409 | None:intergenic |
| AACATACGCTTCTGCTGGTA+TGG | 0.433918 | 4_4:+28334470 | None:intergenic |
| ACTTCAGCTTCTCTTGATAT+GGG | 0.434350 | 4_4:-28332953 | Msa0676910:CDS |
| GATGGCAGTACCTTGGTAAT+TGG | 0.438358 | 4_4:+28332906 | None:intergenic |
| TAGGAAGCAGCTTCAGCAGC+AGG | 0.440486 | 4_4:-28334062 | Msa0676910:CDS |
| TCAAGAAAGAAAGTTGGTCT+TGG | 0.441160 | 4_4:+28335304 | None:intergenic |
| AACCATCCCAAACCCTTCTT+GGG | 0.448617 | 4_4:-28335415 | Msa0676910:CDS |
| TGGTAGGTAGGGTTTATTTG+TGG | 0.451555 | 4_4:-28335866 | Msa0676910:five_prime_UTR |
| TGGAGTTGGAAATCATCAAT+TGG | 0.455092 | 4_4:+28335324 | None:intergenic |
| TGCTGCTGCTTCTCAACTCA+TGG | 0.455822 | 4_4:-28334977 | Msa0676910:CDS |
| GATGGTGTTGGCATCTTTGG+TGG | 0.461897 | 4_4:+28332247 | None:intergenic |
| GTAGCTACCCAAGAAGGGTT+TGG | 0.462332 | 4_4:+28335408 | None:intergenic |
| TGCACAAATTTGGAAGATCA+AGG | 0.462736 | 4_4:-28334743 | Msa0676910:CDS |
| GAATAAACGCAGTTTGGAGT+TGG | 0.464190 | 4_4:-28333119 | Msa0676910:intron |
| AGGAGAATGGACTAGACTTC+CGG | 0.464529 | 4_4:+28333732 | None:intergenic |
| TTTGGGATGGTTAGAGAAGG+TGG | 0.466291 | 4_4:+28335426 | None:intergenic |
| GATGGTTCTGATCCTTCATA+TGG | 0.468864 | 4_4:-28335279 | Msa0676910:CDS |
| TATTAATGATTATGAGTAAG+TGG | 0.473294 | 4_4:-28336456 | Msa0676910:five_prime_UTR |
| GGGATGTTTGCCGGCACCGG+TGG | 0.476292 | 4_4:-28332768 | Msa0676910:CDS |
| CAATCAATCAACGGTTATGT+TGG | 0.476427 | 4_4:-28333459 | Msa0676910:CDS |
| GAAGGTGATGGAGGAGTTGA+AGG | 0.476556 | 4_4:+28335513 | None:intergenic |
| GAGGTAATTCTTCTCTTCAT+AGG | 0.476864 | 4_4:-28335251 | Msa0676910:CDS |
| AGTATAGTATTGATGATTGA+TGG | 0.480918 | 4_4:+28332223 | None:intergenic |
| TAGGAGATTGAGTAGGAGAA+TGG | 0.481381 | 4_4:+28333719 | None:intergenic |
| GAAAATATTGGATATAGAAA+CGG | 0.482183 | 4_4:-28336424 | Msa0676910:five_prime_UTR |
| CATGATGATTTGGTTGTTGG+TGG | 0.482251 | 4_4:-28335354 | Msa0676910:CDS |
| CATTGTGTTTGTTTGTTTGA+GGG | 0.482585 | 4_4:-28336252 | Msa0676910:five_prime_UTR |
| TCTCTGAAAGTACTATCAGC+TGG | 0.483478 | 4_4:+28334642 | None:intergenic |
| TCTGATCCTTCATATGGTTG+GGG | 0.483566 | 4_4:-28335273 | Msa0676910:CDS |
| GGAATCCTCACATCTTGAAC+AGG | 0.483680 | 4_4:+28334491 | None:intergenic |
| CTCAGTAGTTACTGCCCCAC+AGG | 0.484969 | 4_4:-28332105 | Msa0676910:three_prime_UTR |
| TCTTTCCTTTGCTCACCAAA+AGG | 0.487823 | 4_4:-28334946 | Msa0676910:CDS |
| GCTTCCCCTACAAAAGCTGC+TGG | 0.488294 | 4_4:-28333070 | Msa0676910:CDS |
| ATTGGGATGTTTGCCGGCAC+CGG | 0.489063 | 4_4:-28332771 | Msa0676910:CDS |
| TAACAAGATTGAAAATATGA+TGG | 0.492689 | 4_4:-28335064 | Msa0676910:CDS |
| TTCAGTAAAGGAAGTGGGGC+AGG | 0.493411 | 4_4:-28332162 | Msa0676910:three_prime_UTR |
| AGTAGATTTGTCTTGAAGCT+GGG | 0.493765 | 4_4:+28334673 | None:intergenic |
| GTGCAATAACTTACTTATCT+GGG | 0.495777 | 4_4:+28334330 | None:intergenic |
| GGTTCTGAGGATCCAAGTGC+TGG | 0.496209 | 4_4:-28335192 | Msa0676910:CDS |
| AGTAATGCTTCAGTTTCTGC+TGG | 0.501975 | 4_4:-28333486 | Msa0676910:CDS |
| ACTTCTTCAAGGCTTAGTAC+TGG | 0.503797 | 4_4:-28335459 | Msa0676910:CDS |
| GTGTTGGTCAATGGTGAGAA+TGG | 0.508506 | 4_4:-28333429 | Msa0676910:CDS |
| AGTAGATGTATCTGAATCAA+TGG | 0.508605 | 4_4:+28333009 | None:intergenic |
| GCCGGCACCGGTGGACCGAT+TGG | 0.509573 | 4_4:-28332759 | Msa0676910:CDS |
| CAAACATCCCAATAGTTCCA+TGG | 0.516522 | 4_4:+28332781 | None:intergenic |
| TGTTAAGCCTTACAAGGAGA+AGG | 0.518187 | 4_4:-28334360 | Msa0676910:CDS |
| GGTGTTGGCATCTTTGGTGG+TGG | 0.520609 | 4_4:+28332250 | None:intergenic |
| CGAGCCTCACAAACAAAATG+AGG | 0.520727 | 4_4:+28334389 | None:intergenic |
| AGTACTTGTTAAGCCTTACA+AGG | 0.523363 | 4_4:-28334366 | Msa0676910:CDS |
| CTCTAATGGTCCATTAGAGA+AGG | 0.531820 | 4_4:+28333033 | None:intergenic |
| ATTAATGATTATGAGTAAGT+GGG | 0.532526 | 4_4:-28336455 | Msa0676910:five_prime_UTR |
| TAGGAAGTAGCTCCTTTCAC+AGG | 0.535965 | 4_4:-28332042 | Msa0676910:three_prime_UTR |
| CTCTGAAAGTACTATCAGCT+GGG | 0.538342 | 4_4:+28334643 | None:intergenic |
| CCTTCTGCAAAACAAGGCGG+TGG | 0.541998 | 4_4:-28336310 | Msa0676910:five_prime_UTR |
| TTCTTGAACCAAATCATGGA+TGG | 0.542653 | 4_4:-28335744 | Msa0676910:exon |
| CTCTTGAGATTCAACGTAGG+AGG | 0.543490 | 4_4:-28333810 | Msa0676910:CDS |
| GAAATTATGGTACCTGTGAA+AGG | 0.544287 | 4_4:+28332030 | None:intergenic |
| AAAGCTGCTGGAGACTTAGT+AGG | 0.544349 | 4_4:-28333058 | Msa0676910:CDS |
| GGAGGAGTTGAAGGTGTTGG+TGG | 0.544429 | 4_4:+28335522 | None:intergenic |
| ATAGTAGTAGCTACCCAAGA+AGG | 0.546177 | 4_4:+28335402 | None:intergenic |
| ATGATTGATGGTGATGGTGT+TGG | 0.548035 | 4_4:+28332235 | None:intergenic |
| GGATGGTTAGAGAAGGTGGA+AGG | 0.550377 | 4_4:+28335430 | None:intergenic |
| GCAGTTTCAGTAAAGGAAGT+GGG | 0.551076 | 4_4:-28332167 | Msa0676910:three_prime_UTR |
| TTCTTATTTAGCTGGTTCTG+AGG | 0.551260 | 4_4:-28335205 | Msa0676910:CDS |
| CTGAAGACATGTTGTGGAGG+AGG | 0.552660 | 4_4:-28333861 | Msa0676910:CDS |
| AGCCAAACATACGCTTCTGC+TGG | 0.552768 | 4_4:+28334465 | None:intergenic |
| CATCATTCAAGAAAGAAAGT+TGG | 0.553431 | 4_4:+28335298 | None:intergenic |
| GGTGGAGAGTTATTAGAACA+AGG | 0.554052 | 4_4:+28335540 | None:intergenic |
| ATCCAAGTGCTGGTTTAGGA+TGG | 0.555461 | 4_4:-28335182 | Msa0676910:CDS |
| AAATTAGGTGAAGGTGATGG+AGG | 0.557722 | 4_4:+28335504 | None:intergenic |
| CTGAAACATAATATTATCAA+AGG | 0.559533 | 4_4:+28331819 | None:intergenic |
| CAGGAAAACTAGATACCAAT+CGG | 0.560468 | 4_4:+28332744 | None:intergenic |
| GCCAAGCTCAAGTCATGAAG+AGG | 0.563642 | 4_4:-28333379 | Msa0676910:CDS |
| AGCAGTTTCAGTAAAGGAAG+TGG | 0.564046 | 4_4:-28332168 | Msa0676910:three_prime_UTR |
| GAAAATGCATCAAATATCAT+GGG | 0.565223 | 4_4:-28335672 | Msa0676910:CDS |
| TACCAAGTTGAAGATCATAC+TGG | 0.565581 | 4_4:+28333990 | None:intergenic |
| GACCAGTATGATCTTCAACT+TGG | 0.566045 | 4_4:-28333992 | Msa0676910:intron |
| GATGGAGGAGTTGAAGGTGT+TGG | 0.569843 | 4_4:+28335519 | None:intergenic |
| GATGGGGCAGTATAAGTGAA+TGG | 0.570987 | 4_4:-28336346 | Msa0676910:five_prime_UTR |
| CACCAACGTGCACTTTCCAC+CGG | 0.572559 | 4_4:-28333751 | Msa0676910:CDS |
| TTATGTTGGCAAGGAAGTGT+TGG | 0.572886 | 4_4:-28333445 | Msa0676910:CDS |
| TTGGTCCTGTTCAAGATGTG+AGG | 0.573377 | 4_4:-28334496 | Msa0676910:CDS |
| AAAAGCATGCACATATGAAG+TGG | 0.573833 | 4_4:-28331969 | Msa0676910:three_prime_UTR |
| TTACCTCCCCAACCATATGA+AGG | 0.573835 | 4_4:+28335267 | None:intergenic |
| GTTAAGCCTTACAAGGAGAA+GGG | 0.574645 | 4_4:-28334359 | Msa0676910:CDS |
| AATCCAATATATGAAATGAA+AGG | 0.574818 | 4_4:+28336188 | None:intergenic |
| CTAGATACCAATCGGTCCAC+CGG | 0.575012 | 4_4:+28332752 | None:intergenic |
| CTAGCATCAACAAGTCCAGT+TGG | 0.578010 | 4_4:+28334016 | None:intergenic |
| GGCAAGGAAGTGTTGGTCAA+TGG | 0.579051 | 4_4:-28333438 | Msa0676910:CDS |
| AGACATGTTGTGGAGGAGGA+AGG | 0.581194 | 4_4:-28333857 | Msa0676910:CDS |
| AAACATCCCAATAGTTCCAT+GGG | 0.583735 | 4_4:+28332782 | None:intergenic |
| ATTGTGTTTGTTTGTTTGAG+GGG | 0.584890 | 4_4:-28336251 | Msa0676910:five_prime_UTR |
| GGGTTTGGGATGGTTAGAGA+AGG | 0.586472 | 4_4:+28335423 | None:intergenic |
| ATATCAAGAGAAGCTGAAGT+TGG | 0.586830 | 4_4:+28332956 | None:intergenic |
| CACCAACAACCAAATCATCA+TGG | 0.590260 | 4_4:+28335355 | None:intergenic |
| TTCCATCCTAAACCAGCACT+TGG | 0.596178 | 4_4:+28335180 | None:intergenic |
| AAGCTCACAATAGTAGCAAG+AGG | 0.597653 | 4_4:+28331718 | None:intergenic |
| ATAACACTGAAGACATGTTG+TGG | 0.597721 | 4_4:-28333867 | Msa0676910:CDS |
| AAAATCAAAATGATACTCAA+AGG | 0.597880 | 4_4:-28334897 | Msa0676910:intron |
| AATCAACGGTTATGTTGGCA+AGG | 0.598412 | 4_4:-28333454 | Msa0676910:CDS |
| TTGCTTCTTAGTAAAGAGCA+TGG | 0.599243 | 4_4:-28335648 | Msa0676910:CDS |
| CCTCTTGCAAAATAAAGACA+TGG | 0.600057 | 4_4:+28335156 | None:intergenic |
| GATCCTTCATATGGTTGGGG+AGG | 0.600288 | 4_4:-28335270 | Msa0676910:CDS |
| TGCAGCTTTAATGATGAATG+AGG | 0.607606 | 4_4:-28334769 | Msa0676910:CDS |
| AGGAAATTAGGTGAAGGTGA+TGG | 0.608102 | 4_4:+28335501 | None:intergenic |
| CTTGAAAGGAAATTAGGTGA+AGG | 0.619146 | 4_4:+28335495 | None:intergenic |
| TACCCAAGAAGGGTTTGGGA+TGG | 0.619888 | 4_4:+28335413 | None:intergenic |
| TGGTTATGAAGCAACTAAGA+TGG | 0.623405 | 4_4:-28335724 | Msa0676910:CDS |
| AGGAAGCAGCTTCAGCAGCA+GGG | 0.623572 | 4_4:-28334061 | Msa0676910:CDS |
| ATAATGCTCCAGCTGTACAA+AGG | 0.623606 | 4_4:+28332003 | None:intergenic |
| TCTAATGGTCCATTAGAGAA+GGG | 0.630191 | 4_4:+28333034 | None:intergenic |
| TAGTAGTAGCTACCCAAGAA+GGG | 0.633677 | 4_4:+28335403 | None:intergenic |
| TATGCTCATCATGATTCATG+TGG | 0.635403 | 4_4:-28334091 | Msa0676910:CDS |
| ACTGCTCCTTCTGCAAAACA+AGG | 0.635900 | 4_4:-28336316 | Msa0676910:five_prime_UTR |
| CAGTTTCAGTAAAGGAAGTG+GGG | 0.640959 | 4_4:-28332166 | Msa0676910:three_prime_UTR |
| AGAAGCTCAGAGTTCCCAGA+GGG | 0.641268 | 4_4:-28333658 | Msa0676910:intron |
| TAGAAGCTCAGAGTTCCCAG+AGG | 0.649309 | 4_4:-28333659 | Msa0676910:CDS |
| ATAATAACTGCCAATTACCA+AGG | 0.653801 | 4_4:-28332916 | Msa0676910:intron |
| GCTGGGTTAATCATTCCAGT+AGG | 0.658453 | 4_4:+28334690 | None:intergenic |
| GAGCCTCACAAACAAAATGA+GGG | 0.658530 | 4_4:+28334390 | None:intergenic |
| TCTGAGCTTCTACGAAACGA+AGG | 0.664963 | 4_4:+28333670 | None:intergenic |
| AGTCCAGTTGGAGTGCGACA+CGG | 0.665479 | 4_4:+28334028 | None:intergenic |
| GCTGGTCAACAATCAATCAA+CGG | 0.670136 | 4_4:-28333468 | Msa0676910:CDS |
| AGAATGGACTAGACTTCCGG+TGG | 0.670680 | 4_4:+28333735 | None:intergenic |
| GTATTGATGATTGATGGTGA+TGG | 0.677453 | 4_4:+28332229 | None:intergenic |
| ACACTGAAGACATGTTGTGG+AGG | 0.682283 | 4_4:-28333864 | Msa0676910:CDS |
| CCTCAAACAAACAAACACAA+TGG | 0.692546 | 4_4:+28336253 | None:intergenic |
| TTCAACGTAGGAGGTTAATG+GGG | 0.699821 | 4_4:-28333801 | Msa0676910:CDS |
| AGCTGATAGTACTTTCAGAG+AGG | 0.701721 | 4_4:-28334640 | Msa0676910:CDS |
| GCTCCTTCTGCAAAACAAGG+CGG | 0.720204 | 4_4:-28336313 | Msa0676910:five_prime_UTR |
| TTCCGGTGGAAAGTGCACGT+TGG | 0.732492 | 4_4:+28333749 | None:intergenic |
| AACATGTTAGGAGATTGAGT+AGG | 0.740499 | 4_4:+28333712 | None:intergenic |
| AAGCTCTTGAGATTCAACGT+AGG | 0.757112 | 4_4:-28333813 | Msa0676910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTGTTTTGTTTT+TGG | - | chr4_4:28332004-28332023 | Msa0676910:three_prime_UTR | 10.0% |
| !!! | ATATTTTTGTTTTTCTATTA+AGG | - | chr4_4:28332349-28332368 | Msa0676910:intron | 10.0% |
| !! | ATAATAATGTAATAATTACA+GGG | - | chr4_4:28333342-28333361 | Msa0676910:intron | 10.0% |
| !! | AAAATTTCAACAAAAATTAT+AGG | + | chr4_4:28335295-28335314 | None:intergenic | 10.0% |
| !!! | TATAATTTTTGTTGAAATTT+TGG | - | chr4_4:28335294-28335313 | Msa0676910:CDS | 10.0% |
| !! | ATATATTGGATTAAGAAATA+TGG | - | chr4_4:28331964-28331983 | Msa0676910:three_prime_UTR | 15.0% |
| !! | GATAATAATGTAATAATTAC+AGG | - | chr4_4:28333341-28333360 | Msa0676910:intron | 15.0% |
| !!! | TATTTTTTTTGAAGCAAATT+TGG | - | chr4_4:28333626-28333645 | Msa0676910:intron | 15.0% |
| !! | TACTTAATGTAAATGAAAAT+AGG | + | chr4_4:28334815-28334834 | None:intergenic | 15.0% |
| !!! | TTGATTGTCATTTAAATTAA+AGG | - | chr4_4:28334976-28334995 | Msa0676910:CDS | 15.0% |
| !!! | TGATTGTCATTTAAATTAAA+GGG | - | chr4_4:28334977-28334996 | Msa0676910:CDS | 15.0% |
| !!! | TTTGGAAATTTTAATTGATT+TGG | - | chr4_4:28335312-28335331 | Msa0676910:CDS | 15.0% |
| !!! | ATTTTAATTGATTTGGAATT+TGG | - | chr4_4:28335319-28335338 | Msa0676910:CDS | 15.0% |
| !!! | CTTATTATTTTCATATATGA+AGG | - | chr4_4:28335695-28335714 | Msa0676910:CDS | 15.0% |
| !!! | GTTTTATTAAATTTAGAAGT+CGG | - | chr4_4:28335770-28335789 | Msa0676910:five_prime_UTR | 15.0% |
| !!! | AATTTTTTTTTTTTACCTGT+GGG | + | chr4_4:28336054-28336073 | None:intergenic | 15.0% |
| !!! | TAATTTTTTTTTTTTACCTG+TGG | + | chr4_4:28336055-28336074 | None:intergenic | 15.0% |
| !! | AAAAATTAAATAACACACAA+AGG | - | chr4_4:28336067-28336086 | Msa0676910:intron | 15.0% |
| !!! | GTATTTTTAGACTTAAAAAT+TGG | - | chr4_4:28336392-28336411 | Msa0676910:five_prime_UTR | 15.0% |
| !! | TATTAATGATTATGAGTAAG+TGG | - | chr4_4:28331685-28331704 | Msa0676910:three_prime_UTR | 20.0% |
| !! | ATTAATGATTATGAGTAAGT+GGG | - | chr4_4:28331686-28331705 | Msa0676910:three_prime_UTR | 20.0% |
| !! | GAAAATATTGGATATAGAAA+CGG | - | chr4_4:28331717-28331736 | Msa0676910:three_prime_UTR | 20.0% |
| !! | TATCCTTTCATTTCATATAT+TGG | - | chr4_4:28331950-28331969 | Msa0676910:three_prime_UTR | 20.0% |
| !! | AATCCAATATATGAAATGAA+AGG | + | chr4_4:28331956-28331975 | None:intergenic | 20.0% |
| !! | AATAAGAGAGAAAAAAAGAA+AGG | + | chr4_4:28332117-28332136 | None:intergenic | 20.0% |
| !! | AAAGTTAAAGAAGAAGAAAA+AGG | + | chr4_4:28332194-28332213 | None:intergenic | 20.0% |
| !! | AAAGAAACTTTACTTGTAAT+AGG | - | chr4_4:28332303-28332322 | Msa0676910:intron | 20.0% |
| !!! | ATCATATTTTCAATCTTGTT+AGG | + | chr4_4:28333078-28333097 | None:intergenic | 20.0% |
| !! | TAACAAGATTGAAAATATGA+TGG | - | chr4_4:28333077-28333096 | Msa0676910:CDS | 20.0% |
| !! | AAAATCAAAATGATACTCAA+AGG | - | chr4_4:28333244-28333263 | Msa0676910:intron | 20.0% |
| !! | AAGATAAATCACATATTAAG+AGG | + | chr4_4:28334224-28334243 | None:intergenic | 20.0% |
| !! | AAATAAAAAAAATACCCTCT+GGG | + | chr4_4:28334500-28334519 | None:intergenic | 20.0% |
| !! | AAAATAAAAAAAATACCCTC+TGG | + | chr4_4:28334501-28334520 | None:intergenic | 20.0% |
| !!! | GTATATTTCTCTTCAATTTT+AGG | - | chr4_4:28334526-28334545 | Msa0676910:intron | 20.0% |
| !! | AAAACTTCTAATAGTGTAAT+AGG | - | chr4_4:28334834-28334853 | Msa0676910:intron | 20.0% |
| !! | AAACTTCTAATAGTGTAATA+GGG | - | chr4_4:28334835-28334854 | Msa0676910:intron | 20.0% |
| !! | ATGAAAAATTGTTACAACAA+CGG | - | chr4_4:28335583-28335602 | Msa0676910:CDS | 20.0% |
| !!! | ATTTTCATATATGAAGGAAA+TGG | - | chr4_4:28335701-28335720 | Msa0676910:CDS | 20.0% |
| !!! | TTTTACGTATGAATTTTGTA+TGG | + | chr4_4:28335952-28335971 | None:intergenic | 20.0% |
| !! | AGAAAAAGAAAGAAAAGAAA+TGG | + | chr4_4:28336005-28336024 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTTTTTACCTGTG+GGG | + | chr4_4:28336053-28336072 | None:intergenic | 20.0% |
| !! | TTGAGTTAAAGTTAAAAAAG+AGG | - | chr4_4:28336290-28336309 | Msa0676910:five_prime_UTR | 20.0% |
| !! | CTGAAACATAATATTATCAA+AGG | + | chr4_4:28336325-28336344 | None:intergenic | 20.0% |
| !!! | TGTGTGTGTTTTTATTAATG+GGG | + | chr4_4:28331775-28331794 | None:intergenic | 25.0% |
| !!! | CTGTGTGTGTTTTTATTAAT+GGG | + | chr4_4:28331776-28331795 | None:intergenic | 25.0% |
| !!! | TCTGTGTGTGTTTTTATTAA+TGG | + | chr4_4:28331777-28331796 | None:intergenic | 25.0% |
| ! | TTAATAAAAACACACACAGA+TGG | - | chr4_4:28331777-28331796 | Msa0676910:three_prime_UTR | 25.0% |
| ! | TAATAAAAACACACACAGAT+GGG | - | chr4_4:28331778-28331797 | Msa0676910:three_prime_UTR | 25.0% |
| ! | AGAGAGACATAATAATATGA+TGG | + | chr4_4:28332081-28332100 | None:intergenic | 25.0% |
| !!! | GAAACATACTCATTTTAACT+TGG | - | chr4_4:28332255-28332274 | Msa0676910:three_prime_UTR | 25.0% |
| !! | TGATATTTGATGCATTTTCA+GGG | + | chr4_4:28332468-28332487 | None:intergenic | 25.0% |
| !! | ATGATATTTGATGCATTTTC+AGG | + | chr4_4:28332469-28332488 | None:intergenic | 25.0% |
| ! | TGAAAATGCATCAAATATCA+TGG | - | chr4_4:28332468-28332487 | Msa0676910:intron | 25.0% |
| ! | GAAAATGCATCAAATATCAT+GGG | - | chr4_4:28332469-28332488 | Msa0676910:intron | 25.0% |
| ! | AAAATTCATCAACTTCTTCA+AGG | - | chr4_4:28332671-28332690 | Msa0676910:intron | 25.0% |
| !! | CTAAATAAACCTGAAGTATT+CGG | + | chr4_4:28333536-28333555 | None:intergenic | 25.0% |
| ! | TGCAATTTACAACATTGAAA+AGG | + | chr4_4:28334010-28334029 | None:intergenic | 25.0% |
| ! | TAAATCACATATTAAGAGGT+AGG | + | chr4_4:28334220-28334239 | None:intergenic | 25.0% |
| !!! | ACAATTTTGATTTCAGTGAT+TGG | - | chr4_4:28334610-28334629 | Msa0676910:intron | 25.0% |
| !!! | TTTTAACATGGACTAAAAAG+AGG | + | chr4_4:28334906-28334925 | None:intergenic | 25.0% |
| !!! | CAGAACTTTTGTTTTTAACA+TGG | + | chr4_4:28334918-28334937 | None:intergenic | 25.0% |
| ! | CATGTTAAAAACAAAAGTTC+TGG | - | chr4_4:28334916-28334935 | Msa0676910:CDS | 25.0% |
| ! | CAATCAAAGTTAGAAAAACT+TGG | + | chr4_4:28334963-28334982 | None:intergenic | 25.0% |
| ! | AAAGGGACTTTGTATTTAAA+TGG | - | chr4_4:28334994-28335013 | Msa0676910:CDS | 25.0% |
| !! | TAGTTCTCTTTCTAGAAATT+TGG | - | chr4_4:28335478-28335497 | Msa0676910:CDS | 25.0% |
| ! | TTTCATATAGAGTGTATCTT+TGG | + | chr4_4:28335569-28335588 | None:intergenic | 25.0% |
| ! | TTAAGATGTTAGAGACAAAA+TGG | - | chr4_4:28335613-28335632 | Msa0676910:CDS | 25.0% |
| !!! | TCTCTACATATTTTTGTTGT+TGG | + | chr4_4:28335864-28335883 | None:intergenic | 25.0% |
| !!! | AGTATAGTATTGATGATTGA+TGG | + | chr4_4:28335921-28335940 | None:intergenic | 25.0% |
| ! | TAAAAAAGCAGTTTCAGTAA+AGG | - | chr4_4:28335967-28335986 | Msa0676910:intron | 25.0% |
| !!! | CACACAAAGGTATTATTATT+AGG | - | chr4_4:28336080-28336099 | Msa0676910:intron | 25.0% |
| !!! | TTTCTAAAATCTTTTCTGTC+TGG | + | chr4_4:28336356-28336375 | None:intergenic | 25.0% |
| !!! | TGTGAGCTTTTTGATTTTAA+AGG | - | chr4_4:28336437-28336456 | Msa0676910:five_prime_UTR | 25.0% |
| AATAAAAACACACACAGATG+GGG | - | chr4_4:28331779-28331798 | Msa0676910:three_prime_UTR | 30.0% | |
| AACAAACACAATGGCTTATT+TGG | + | chr4_4:28331882-28331901 | None:intergenic | 30.0% | |
| CATTGTGTTTGTTTGTTTGA+GGG | - | chr4_4:28331889-28331908 | Msa0676910:three_prime_UTR | 30.0% | |
| ATTGTGTTTGTTTGTTTGAG+GGG | - | chr4_4:28331890-28331909 | Msa0676910:three_prime_UTR | 30.0% | |
| GAGACATAATAATATGATGG+TGG | + | chr4_4:28332078-28332097 | None:intergenic | 30.0% | |
| TTAAAAGTAGTATTCTCGTG+TGG | + | chr4_4:28332146-28332165 | None:intergenic | 30.0% | |
| AAGAAGAAGAAAAAGGAGAT+GGG | + | chr4_4:28332187-28332206 | None:intergenic | 30.0% | |
| AAAGAAGAAGAAAAAGGAGA+TGG | + | chr4_4:28332188-28332207 | None:intergenic | 30.0% | |
| !!! | CATACTCATTTTAACTTGGT+AGG | - | chr4_4:28332259-28332278 | Msa0676910:three_prime_UTR | 30.0% |
| !!! | TCATTTTAACTTGGTAGGTA+GGG | - | chr4_4:28332264-28332283 | Msa0676910:three_prime_UTR | 30.0% |
| ! | TCTTTTCTTGAACCAAATCA+TGG | - | chr4_4:28332393-28332412 | Msa0676910:intron | 30.0% |
| !! | GTTTTCAAGGATCAAAAACA+TGG | - | chr4_4:28332441-28332460 | Msa0676910:intron | 30.0% |
| ACTGAATGAATAAGTGATTC+AGG | + | chr4_4:28332550-28332569 | None:intergenic | 30.0% | |
| TTCAAAGCTAGAAAAGAGTT+AGG | - | chr4_4:28332574-28332593 | Msa0676910:intron | 30.0% | |
| ! | TTTTGCCTTGAAAGGAAATT+AGG | + | chr4_4:28332655-28332674 | None:intergenic | 30.0% |
| ! | TTGATGAATTTTGCCTTGAA+AGG | + | chr4_4:28332663-28332682 | None:intergenic | 30.0% |
| GTTTCAAAACCATGATGATT+TGG | - | chr4_4:28332777-28332796 | Msa0676910:CDS | 30.0% | |
| CATCATTCAAGAAAGAAAGT+TGG | + | chr4_4:28332846-28332865 | None:intergenic | 30.0% | |
| CAACTTTCTTTCTTGAATGA+TGG | - | chr4_4:28332844-28332863 | Msa0676910:intron | 30.0% | |
| ! | AATGATGCTTCTTATTTAGC+TGG | - | chr4_4:28332928-28332947 | Msa0676910:CDS | 30.0% |
| !!! | CATGTCTTTATTTTGCAAGA+GGG | - | chr4_4:28332986-28333005 | Msa0676910:CDS | 30.0% |
| GTAAAAATGGTACTAGTTGT+AGG | - | chr4_4:28333013-28333032 | Msa0676910:CDS | 30.0% | |
| ATCTTCTCATCAACAAAGAT+TGG | - | chr4_4:28333134-28333153 | Msa0676910:intron | 30.0% | |
| ! | AAAAGGAAATTCATGCCTTT+TGG | + | chr4_4:28333213-28333232 | None:intergenic | 30.0% |
| !! | TACATTTGTTTTTCCAGAGA+CGG | - | chr4_4:28333703-28333722 | Msa0676910:CDS | 30.0% |
| GTGCAATAACTTACTTATCT+GGG | + | chr4_4:28333814-28333833 | None:intergenic | 30.0% | |
| ! | ATGATTCATGTGGTTTGTAT+AGG | - | chr4_4:28334060-28334079 | Msa0676910:CDS | 30.0% |
| ! | AAAAGTTCTGGCATTTATTC+AGG | - | chr4_4:28334928-28334947 | Msa0676910:CDS | 30.0% |
| GTTAATGAATAAACGCAGTT+TGG | - | chr4_4:28335016-28335035 | Msa0676910:CDS | 30.0% | |
| AGTAGATGTATCTGAATCAA+TGG | + | chr4_4:28335135-28335154 | None:intergenic | 30.0% | |
| !! | ACATCTACTAGCTCTAAATT+TGG | - | chr4_4:28335146-28335165 | Msa0676910:CDS | 30.0% |
| GGTAATTGGCAGTTATTATA+TGG | + | chr4_4:28335224-28335243 | None:intergenic | 30.0% | |
| ATAATAACTGCCAATTACCA+AGG | - | chr4_4:28335225-28335244 | Msa0676910:CDS | 30.0% | |
| AATGGAAAGATGAAATGTGA+TGG | + | chr4_4:28335256-28335275 | None:intergenic | 30.0% | |
| !! | TTGATTTGGAATTTGGACTT+AGG | - | chr4_4:28335326-28335345 | Msa0676910:CDS | 30.0% |
| ! | ATTAATTTTACCTGAACCTC+AGG | + | chr4_4:28335419-28335438 | None:intergenic | 30.0% |
| TGTCTCTAACATCTTAACAA+AGG | + | chr4_4:28335610-28335629 | None:intergenic | 30.0% | |
| !!! | TTTTGTTGTTGGATTTGTCA+AGG | + | chr4_4:28335853-28335872 | None:intergenic | 30.0% |
| GTACAAAGGACTTGAAATTA+TGG | + | chr4_4:28336127-28336146 | None:intergenic | 30.0% | |
| TGGGAGAGAGAAGAAAATAT+TGG | - | chr4_4:28331705-28331724 | Msa0676910:three_prime_UTR | 35.0% | |
| CCTCAAACAAACAAACACAA+TGG | + | chr4_4:28331891-28331910 | None:intergenic | 35.0% | |
| CCATTGTGTTTGTTTGTTTG+AGG | - | chr4_4:28331888-28331907 | Msa0676910:three_prime_UTR | 35.0% | |
| ! | TTTCTCTTGTTATGCTTTGC+AGG | - | chr4_4:28332217-28332236 | Msa0676910:three_prime_UTR | 35.0% |
| !!! | CTCATTTTAACTTGGTAGGT+AGG | - | chr4_4:28332263-28332282 | Msa0676910:three_prime_UTR | 35.0% |
| TTCTTGAACCAAATCATGGA+TGG | - | chr4_4:28332397-28332416 | Msa0676910:intron | 35.0% | |
| CTTCATAACCATCCATGATT+TGG | + | chr4_4:28332408-28332427 | None:intergenic | 35.0% | |
| TGGTTATGAAGCAACTAAGA+TGG | - | chr4_4:28332417-28332436 | Msa0676910:intron | 35.0% | |
| ! | CAACTAAGATGGTGTTTTCA+AGG | - | chr4_4:28332428-28332447 | Msa0676910:intron | 35.0% |
| TTGCTTCTTAGTAAAGAGCA+TGG | - | chr4_4:28332493-28332512 | Msa0676910:intron | 35.0% | |
| CTTGAAAGGAAATTAGGTGA+AGG | + | chr4_4:28332649-28332668 | None:intergenic | 35.0% | |
| CTTCACCTAATTTCCTTTCA+AGG | - | chr4_4:28332647-28332666 | Msa0676910:intron | 35.0% | |
| !! | AACCATGATGATTTGGTTGT+TGG | - | chr4_4:28332784-28332803 | Msa0676910:CDS | 35.0% |
| TGGAGTTGGAAATCATCAAT+TGG | + | chr4_4:28332820-28332839 | None:intergenic | 35.0% | |
| ! | TCAAGAAAGAAAGTTGGTCT+TGG | + | chr4_4:28332840-28332859 | None:intergenic | 35.0% |
| TTCTGATCCTTCATATGGTT+GGG | - | chr4_4:28332867-28332886 | Msa0676910:intron | 35.0% | |
| GAGGTAATTCTTCTCTTCAT+AGG | - | chr4_4:28332890-28332909 | Msa0676910:intron | 35.0% | |
| !! | TTCTTATTTAGCTGGTTCTG+AGG | - | chr4_4:28332936-28332955 | Msa0676910:CDS | 35.0% |
| CCTCTTGCAAAATAAAGACA+TGG | + | chr4_4:28332988-28333007 | None:intergenic | 35.0% | |
| !!! | CCATGTCTTTATTTTGCAAG+AGG | - | chr4_4:28332985-28333004 | Msa0676910:CDS | 35.0% |
| ACTAGTTGTAGGTTTCTTCA+TGG | - | chr4_4:28333024-28333043 | Msa0676910:CDS | 35.0% | |
| ! | GATTTTGTTGCTGCTGTAAA+AGG | + | chr4_4:28333230-28333249 | None:intergenic | 35.0% |
| ! | TGCAGCTTTAATGATGAATG+AGG | - | chr4_4:28333372-28333391 | Msa0676910:CDS | 35.0% |
| AATGAGGAGTTGCACAAATT+TGG | - | chr4_4:28333388-28333407 | Msa0676910:CDS | 35.0% | |
| TGCACAAATTTGGAAGATCA+AGG | - | chr4_4:28333398-28333417 | Msa0676910:CDS | 35.0% | |
| ! | TTTTCTTTGTACAGTCCTAC+TGG | - | chr4_4:28333436-28333455 | Msa0676910:CDS | 35.0% |
| AGTAGATTTGTCTTGAAGCT+GGG | + | chr4_4:28333471-28333490 | None:intergenic | 35.0% | |
| AAGTAGATTTGTCTTGAAGC+TGG | + | chr4_4:28333472-28333491 | None:intergenic | 35.0% | |
| AAGATGTTTCCGAATACTTC+AGG | - | chr4_4:28333524-28333543 | Msa0676910:intron | 35.0% | |
| ! | GTGAAGGACATTTTGTCTAA+AGG | - | chr4_4:28333725-28333744 | Msa0676910:CDS | 35.0% |
| !! | AAACCCTCATTTTGTTTGTG+AGG | - | chr4_4:28333748-28333767 | Msa0676910:CDS | 35.0% |
| ! | AGTACTTGTTAAGCCTTACA+AGG | - | chr4_4:28333775-28333794 | Msa0676910:CDS | 35.0% |
| ! | ATTTTACCCTTCTCCTTGTA+AGG | + | chr4_4:28333791-28333810 | None:intergenic | 35.0% |
| GGTGCAATAACTTACTTATC+TGG | + | chr4_4:28333815-28333834 | None:intergenic | 35.0% | |
| AGTGTCAAACACATATGAGA+AGG | + | chr4_4:28333836-28333855 | None:intergenic | 35.0% | |
| TTCTCAGACTCGATTATCTT+CGG | - | chr4_4:28333922-28333941 | Msa0676910:intron | 35.0% | |
| TATGCTCATCATGATTCATG+TGG | - | chr4_4:28334050-28334069 | Msa0676910:CDS | 35.0% | |
| ! | TACCAAGTTGAAGATCATAC+TGG | + | chr4_4:28334154-28334173 | None:intergenic | 35.0% |
| AGTATGATCTTCAACTTGGT+AGG | - | chr4_4:28334153-28334172 | Msa0676910:intron | 35.0% | |
| ATAACACTGAAGACATGTTG+TGG | - | chr4_4:28334274-28334293 | Msa0676910:intron | 35.0% | |
| ATTCAACGTAGGAGGTTAAT+GGG | - | chr4_4:28334339-28334358 | Msa0676910:intron | 35.0% | |
| AACATGTTAGGAGATTGAGT+AGG | + | chr4_4:28334432-28334451 | None:intergenic | 35.0% | |
| AGATTCTGATCGAACATGTT+AGG | + | chr4_4:28334444-28334463 | None:intergenic | 35.0% | |
| CAATCAATCAACGGTTATGT+TGG | - | chr4_4:28334682-28334701 | Msa0676910:CDS | 35.0% | |
| !! | AGGAGCTTAATTTGCATGAA+TGG | - | chr4_4:28334782-28334801 | Msa0676910:intron | 35.0% |
| TCTAATGGTCCATTAGAGAA+GGG | + | chr4_4:28335110-28335129 | None:intergenic | 35.0% | |
| TCTGAATCAATGGTCTCTAA+TGG | + | chr4_4:28335125-28335144 | None:intergenic | 35.0% | |
| ATATCAAGAGAAGCTGAAGT+TGG | + | chr4_4:28335188-28335207 | None:intergenic | 35.0% | |
| AACTTCAGCTTCTCTTGATA+TGG | - | chr4_4:28335187-28335206 | Msa0676910:CDS | 35.0% | |
| ACTTCAGCTTCTCTTGATAT+GGG | - | chr4_4:28335188-28335207 | Msa0676910:CDS | 35.0% | |
| GGTGATGAAATTCATGTGAA+TGG | + | chr4_4:28335274-28335293 | None:intergenic | 35.0% | |
| AAACATCCCAATAGTTCCAT+GGG | + | chr4_4:28335362-28335381 | None:intergenic | 35.0% | |
| CAGGAAAACTAGATACCAAT+CGG | + | chr4_4:28335400-28335419 | None:intergenic | 35.0% | |
| !!! | ATTGGTATCTAGTTTTCCTG+AGG | - | chr4_4:28335400-28335419 | Msa0676910:CDS | 35.0% |
| TAGAAAGAGAACTAGACTGA+GGG | + | chr4_4:28335472-28335491 | None:intergenic | 35.0% | |
| TATATGAAGGAAATGGCTTG+AGG | - | chr4_4:28335708-28335727 | Msa0676910:CDS | 35.0% | |
| ATATGAAGGAAATGGCTTGA+GGG | - | chr4_4:28335709-28335728 | Msa0676910:CDS | 35.0% | |
| ACGTTGTGTTCAATCATTAC+AGG | - | chr4_4:28335800-28335819 | Msa0676910:five_prime_UTR | 35.0% | |
| ACAGGAAAATGAAGCAAAGA+TGG | - | chr4_4:28335818-28335837 | Msa0676910:five_prime_UTR | 35.0% | |
| !! | GTATTGATGATTGATGGTGA+TGG | + | chr4_4:28335915-28335934 | None:intergenic | 35.0% |
| GAAATTATGGTACCTGTGAA+AGG | + | chr4_4:28336114-28336133 | None:intergenic | 35.0% | |
| !!! | TATGTGCATGCTTTTTCTCT+AGG | + | chr4_4:28336167-28336186 | None:intergenic | 35.0% |
| ! | AAAAGCATGCACATATGAAG+TGG | - | chr4_4:28336172-28336191 | Msa0676910:intron | 35.0% |
| AGAAAAAGGAGATGGGAAGT+AGG | + | chr4_4:28332180-28332199 | None:intergenic | 40.0% | |
| TGGTAGGTAGGGTTTATTTG+TGG | - | chr4_4:28332275-28332294 | Msa0676910:intron | 40.0% | |
| GGTGGAGAGTTATTAGAACA+AGG | + | chr4_4:28332604-28332623 | None:intergenic | 40.0% | |
| ! | AAATTAGGTGAAGGTGATGG+AGG | + | chr4_4:28332640-28332659 | None:intergenic | 40.0% |
| AGGAAATTAGGTGAAGGTGA+TGG | + | chr4_4:28332643-28332662 | None:intergenic | 40.0% | |
| ACTTCTTCAAGGCTTAGTAC+TGG | - | chr4_4:28332682-28332701 | Msa0676910:intron | 40.0% | |
| TAGTAGTAGCTACCCAAGAA+GGG | + | chr4_4:28332741-28332760 | None:intergenic | 40.0% | |
| ATAGTAGTAGCTACCCAAGA+AGG | + | chr4_4:28332742-28332761 | None:intergenic | 40.0% | |
| CACCAACAACCAAATCATCA+TGG | + | chr4_4:28332789-28332808 | None:intergenic | 40.0% | |
| !! | CATGATGATTTGGTTGTTGG+TGG | - | chr4_4:28332787-28332806 | Msa0676910:CDS | 40.0% |
| !! | AAGAAAGTTGGTCTTGGAGT+TGG | + | chr4_4:28332834-28332853 | None:intergenic | 40.0% |
| !! | GATGGTTCTGATCCTTCATA+TGG | - | chr4_4:28332862-28332881 | Msa0676910:intron | 40.0% |
| GTTCTGATCCTTCATATGGT+TGG | - | chr4_4:28332866-28332885 | Msa0676910:intron | 40.0% | |
| TCTGATCCTTCATATGGTTG+GGG | - | chr4_4:28332868-28332887 | Msa0676910:intron | 40.0% | |
| !! | GCAAGAGGGTACTGTAAAAA+TGG | - | chr4_4:28333000-28333019 | Msa0676910:CDS | 40.0% |
| ATGCTTCTGCTGCAATTGTT+GGG | - | chr4_4:28333049-28333068 | Msa0676910:CDS | 40.0% | |
| TCTTTCCTTTGCTCACCAAA+AGG | - | chr4_4:28333195-28333214 | Msa0676910:intron | 40.0% | |
| !! | CTCTGAAAGTACTATCAGCT+GGG | + | chr4_4:28333501-28333520 | None:intergenic | 40.0% |
| !! | TCTCTGAAAGTACTATCAGC+TGG | + | chr4_4:28333502-28333521 | None:intergenic | 40.0% |
| AGCTGATAGTACTTTCAGAG+AGG | - | chr4_4:28333501-28333520 | Msa0676910:CDS | 40.0% | |
| ! | CTGAATACTGACTGCATTGT+TGG | - | chr4_4:28333562-28333581 | Msa0676910:intron | 40.0% |
| GAGCCTCACAAACAAAATGA+GGG | + | chr4_4:28333754-28333773 | None:intergenic | 40.0% | |
| TGTTAAGCCTTACAAGGAGA+AGG | - | chr4_4:28333781-28333800 | Msa0676910:CDS | 40.0% | |
| GTTAAGCCTTACAAGGAGAA+GGG | - | chr4_4:28333782-28333801 | Msa0676910:CDS | 40.0% | |
| GACCAGTATGATCTTCAACT+TGG | - | chr4_4:28334149-28334168 | Msa0676910:intron | 40.0% | |
| AAGCTCTTGAGATTCAACGT+AGG | - | chr4_4:28334328-28334347 | Msa0676910:intron | 40.0% | |
| GATTCAACGTAGGAGGTTAA+TGG | - | chr4_4:28334338-28334357 | Msa0676910:intron | 40.0% | |
| TTCAACGTAGGAGGTTAATG+GGG | - | chr4_4:28334340-28334359 | Msa0676910:intron | 40.0% | |
| TAGGAGATTGAGTAGGAGAA+TGG | + | chr4_4:28334425-28334444 | None:intergenic | 40.0% | |
| AGTAATGCTTCAGTTTCTGC+TGG | - | chr4_4:28334655-28334674 | Msa0676910:CDS | 40.0% | |
| GCTGGTCAACAATCAATCAA+CGG | - | chr4_4:28334673-28334692 | Msa0676910:CDS | 40.0% | |
| AATCAACGGTTATGTTGGCA+AGG | - | chr4_4:28334687-28334706 | Msa0676910:CDS | 40.0% | |
| ! | TTATGTTGGCAAGGAAGTGT+TGG | - | chr4_4:28334696-28334715 | Msa0676910:CDS | 40.0% |
| ! | GAATAAACGCAGTTTGGAGT+TGG | - | chr4_4:28335022-28335041 | Msa0676910:CDS | 40.0% |
| ! | CTTTTGTAGGGGAAGCAAAA+GGG | + | chr4_4:28335067-28335086 | None:intergenic | 40.0% |
| TTAGTAGGTCCCTTCTCTAA+TGG | - | chr4_4:28335098-28335117 | Msa0676910:CDS | 40.0% | |
| CTCTAATGGTCCATTAGAGA+AGG | + | chr4_4:28335111-28335130 | None:intergenic | 40.0% | |
| CAAACATCCCAATAGTTCCA+TGG | + | chr4_4:28335363-28335382 | None:intergenic | 40.0% | |
| !!! | ATCTAGTTTTCCTGAGGTTC+AGG | - | chr4_4:28335406-28335425 | Msa0676910:CDS | 40.0% |
| CTAGAAAGAGAACTAGACTG+AGG | + | chr4_4:28335473-28335492 | None:intergenic | 40.0% | |
| GCGTATGCTTAGTATTTCAG+TGG | - | chr4_4:28335511-28335530 | Msa0676910:CDS | 40.0% | |
| GTGTATCTTTGGTATCACAG+TGG | + | chr4_4:28335558-28335577 | None:intergenic | 40.0% | |
| !! | ATGATTGATGGTGATGGTGT+TGG | + | chr4_4:28335909-28335928 | None:intergenic | 40.0% |
| AGCAGTTTCAGTAAAGGAAG+TGG | - | chr4_4:28335973-28335992 | Msa0676910:intron | 40.0% | |
| GCAGTTTCAGTAAAGGAAGT+GGG | - | chr4_4:28335974-28335993 | Msa0676910:intron | 40.0% | |
| CAGTTTCAGTAAAGGAAGTG+GGG | - | chr4_4:28335975-28335994 | Msa0676910:intron | 40.0% | |
| ! | TTTCAAGTCCTTTGTACAGC+TGG | - | chr4_4:28336130-28336149 | Msa0676910:intron | 40.0% |
| ATAATGCTCCAGCTGTACAA+AGG | + | chr4_4:28336141-28336160 | None:intergenic | 40.0% | |
| AAGCTCACAATAGTAGCAAG+AGG | + | chr4_4:28336426-28336445 | None:intergenic | 40.0% | |
| GATGGGGCAGTATAAGTGAA+TGG | - | chr4_4:28331795-28331814 | Msa0676910:three_prime_UTR | 45.0% | |
| ACTGCTCCTTCTGCAAAACA+AGG | - | chr4_4:28331825-28331844 | Msa0676910:three_prime_UTR | 45.0% | |
| ! | TTTGGGATGGTTAGAGAAGG+TGG | + | chr4_4:28332718-28332737 | None:intergenic | 45.0% |
| TAACCATCCCAAACCCTTCT+TGG | - | chr4_4:28332725-28332744 | Msa0676910:intron | 45.0% | |
| AACCATCCCAAACCCTTCTT+GGG | - | chr4_4:28332726-28332745 | Msa0676910:intron | 45.0% | |
| TAGCTACCCAAGAAGGGTTT+GGG | + | chr4_4:28332735-28332754 | None:intergenic | 45.0% | |
| TTACCTCCCCAACCATATGA+AGG | + | chr4_4:28332877-28332896 | None:intergenic | 45.0% | |
| !! | ATCCAAGTGCTGGTTTAGGA+TGG | - | chr4_4:28332959-28332978 | Msa0676910:CDS | 45.0% |
| TTCCATCCTAAACCAGCACT+TGG | + | chr4_4:28332964-28332983 | None:intergenic | 45.0% | |
| GATGCTTCTGCTGCAATTGT+TGG | - | chr4_4:28333048-28333067 | Msa0676910:CDS | 45.0% | |
| ! | TCATGCCTTTTGGTGAGCAA+AGG | + | chr4_4:28333203-28333222 | None:intergenic | 45.0% |
| GCTGGGTTAATCATTCCAGT+AGG | + | chr4_4:28333454-28333473 | None:intergenic | 45.0% | |
| TTGGTCCTGTTCAAGATGTG+AGG | - | chr4_4:28333645-28333664 | Msa0676910:intron | 45.0% | |
| GGAATCCTCACATCTTGAAC+AGG | + | chr4_4:28333653-28333672 | None:intergenic | 45.0% | |
| AACATACGCTTCTGCTGGTA+TGG | + | chr4_4:28333674-28333693 | None:intergenic | 45.0% | |
| ! | TACCAGCAGAAGCGTATGTT+TGG | - | chr4_4:28333674-28333693 | Msa0676910:CDS | 45.0% |
| ! | TGTTTTTCCAGAGACGGTGA+AGG | - | chr4_4:28333709-28333728 | Msa0676910:CDS | 45.0% |
| AAAATGTCCTTCACCGTCTC+TGG | + | chr4_4:28333719-28333738 | None:intergenic | 45.0% | |
| CGAGCCTCACAAACAAAATG+AGG | + | chr4_4:28333755-28333774 | None:intergenic | 45.0% | |
| AGTCCCAACTCAATACCATC+CGG | + | chr4_4:28333891-28333910 | None:intergenic | 45.0% | |
| ATCTTCGGTACCAGTTTGAG+TGG | - | chr4_4:28333937-28333956 | Msa0676910:intron | 45.0% | |
| TCTTCGGTACCAGTTTGAGT+GGG | - | chr4_4:28333938-28333957 | Msa0676910:intron | 45.0% | |
| CCAAATTAGCCCACTCAAAC+TGG | + | chr4_4:28333950-28333969 | None:intergenic | 45.0% | |
| !! | CCAGTTTGAGTGGGCTAATT+TGG | - | chr4_4:28333947-28333966 | Msa0676910:intron | 45.0% |
| CTAGCATCAACAAGTCCAGT+TGG | + | chr4_4:28334128-28334147 | None:intergenic | 45.0% | |
| ACACTGAAGACATGTTGTGG+AGG | - | chr4_4:28334277-28334296 | Msa0676910:intron | 45.0% | |
| CTCTTGAGATTCAACGTAGG+AGG | - | chr4_4:28334331-28334350 | Msa0676910:intron | 45.0% | |
| !! | AGGAGAATGGACTAGACTTC+CGG | + | chr4_4:28334412-28334431 | None:intergenic | 45.0% |
| TCTGAGCTTCTACGAAACGA+AGG | + | chr4_4:28334474-28334493 | None:intergenic | 45.0% | |
| ! | GTGTTGGTCAATGGTGAGAA+TGG | - | chr4_4:28334712-28334731 | Msa0676910:CDS | 45.0% |
| TCCTCTTCATGACTTGAGCT+TGG | + | chr4_4:28334766-28334785 | None:intergenic | 45.0% | |
| ! | GCTTTTGTAGGGGAAGCAAA+AGG | + | chr4_4:28335068-28335087 | None:intergenic | 45.0% |
| ! | AGTCTCCAGCAGCTTTTGTA+GGG | + | chr4_4:28335079-28335098 | None:intergenic | 45.0% |
| ! | AAGTCTCCAGCAGCTTTTGT+AGG | + | chr4_4:28335080-28335099 | None:intergenic | 45.0% |
| AAAGCTGCTGGAGACTTAGT+AGG | - | chr4_4:28335083-28335102 | Msa0676910:CDS | 45.0% | |
| ! | GATGGCAGTACCTTGGTAAT+TGG | + | chr4_4:28335238-28335257 | None:intergenic | 45.0% |
| GAAATGTGATGGCAGTACCT+TGG | + | chr4_4:28335245-28335264 | None:intergenic | 45.0% | |
| ! | CTTAGGTTTTCTTCTGCCCA+TGG | - | chr4_4:28335343-28335362 | Msa0676910:CDS | 45.0% |
| TCTTCTGCCCATGGAACTAT+TGG | - | chr4_4:28335352-28335371 | Msa0676910:CDS | 45.0% | |
| CTTCTGCCCATGGAACTATT+GGG | - | chr4_4:28335353-28335372 | Msa0676910:CDS | 45.0% | |
| GGAACTATTGGGATGTTTGC+CGG | - | chr4_4:28335364-28335383 | Msa0676910:CDS | 45.0% | |
| TAGGAAGTAGCTCCTTTCAC+AGG | - | chr4_4:28336099-28336118 | Msa0676910:intron | 45.0% | |
| GCTCCTTCTGCAAAACAAGG+CGG | - | chr4_4:28331828-28331847 | Msa0676910:three_prime_UTR | 50.0% | |
| TGCAAAACAAGGCGGTGGTT+TGG | - | chr4_4:28331836-28331855 | Msa0676910:three_prime_UTR | 50.0% | |
| ! | GATGGAGGAGTTGAAGGTGT+TGG | + | chr4_4:28332625-28332644 | None:intergenic | 50.0% |
| !! | GAAGGTGATGGAGGAGTTGA+AGG | + | chr4_4:28332631-28332650 | None:intergenic | 50.0% |
| GGATGGTTAGAGAAGGTGGA+AGG | + | chr4_4:28332714-28332733 | None:intergenic | 50.0% | |
| ! | GGGTTTGGGATGGTTAGAGA+AGG | + | chr4_4:28332721-28332740 | None:intergenic | 50.0% |
| TACCCAAGAAGGGTTTGGGA+TGG | + | chr4_4:28332731-28332750 | None:intergenic | 50.0% | |
| GTAGCTACCCAAGAAGGGTT+TGG | + | chr4_4:28332736-28332755 | None:intergenic | 50.0% | |
| GATCCTTCATATGGTTGGGG+AGG | - | chr4_4:28332871-28332890 | Msa0676910:intron | 50.0% | |
| !! | GAGGATCCAAGTGCTGGTTT+AGG | - | chr4_4:28332955-28332974 | Msa0676910:CDS | 50.0% |
| ! | TGCTGCTGCTTCTCAACTCA+TGG | - | chr4_4:28333164-28333183 | Msa0676910:intron | 50.0% |
| AGCCAAACATACGCTTCTGC+TGG | + | chr4_4:28333679-28333698 | None:intergenic | 50.0% | |
| ATTCGTGTCCGTAACCCACT+TGG | - | chr4_4:28333860-28333879 | Msa0676910:CDS | 50.0% | |
| TTCGTGTCCGTAACCCACTT+GGG | - | chr4_4:28333861-28333880 | Msa0676910:CDS | 50.0% | |
| ! | TTGGCCGGATGGTATTGAGT+TGG | - | chr4_4:28333884-28333903 | Msa0676910:CDS | 50.0% |
| ! | TGGCCGGATGGTATTGAGTT+GGG | - | chr4_4:28333885-28333904 | Msa0676910:CDS | 50.0% |
| CTGAAGACATGTTGTGGAGG+AGG | - | chr4_4:28334280-28334299 | Msa0676910:intron | 50.0% | |
| AGACATGTTGTGGAGGAGGA+AGG | - | chr4_4:28334284-28334303 | Msa0676910:intron | 50.0% | |
| !! | AGAATGGACTAGACTTCCGG+TGG | + | chr4_4:28334409-28334428 | None:intergenic | 50.0% |
| TAGAAGCTCAGAGTTCCCAG+AGG | - | chr4_4:28334482-28334501 | Msa0676910:CDS | 50.0% | |
| AGAAGCTCAGAGTTCCCAGA+GGG | - | chr4_4:28334483-28334502 | Msa0676910:CDS | 50.0% | |
| !! | GGCAAGGAAGTGTTGGTCAA+TGG | - | chr4_4:28334703-28334722 | Msa0676910:CDS | 50.0% |
| GCCAAGCTCAAGTCATGAAG+AGG | - | chr4_4:28334762-28334781 | Msa0676910:CDS | 50.0% | |
| ! | GTCTCCAGCAGCTTTTGTAG+GGG | + | chr4_4:28335078-28335097 | None:intergenic | 50.0% |
| CTAGATACCAATCGGTCCAC+CGG | + | chr4_4:28335392-28335411 | None:intergenic | 50.0% | |
| !! | GATGGTGTTGGCATCTTTGG+TGG | + | chr4_4:28335897-28335916 | None:intergenic | 50.0% |
| !! | GGTGATGGTGTTGGCATCTT+TGG | + | chr4_4:28335900-28335919 | None:intergenic | 50.0% |
| TTCAGTAAAGGAAGTGGGGC+AGG | - | chr4_4:28335979-28335998 | Msa0676910:intron | 50.0% | |
| !!! | CCACCGCCTTGTTTTGCAGA+AGG | + | chr4_4:28331834-28331853 | None:intergenic | 55.0% |
| CCTTCTGCAAAACAAGGCGG+TGG | - | chr4_4:28331831-28331850 | Msa0676910:three_prime_UTR | 55.0% | |
| !! | GGAGGAGTTGAAGGTGTTGG+TGG | + | chr4_4:28332622-28332641 | None:intergenic | 55.0% |
| !! | GGTTCTGAGGATCCAAGTGC+TGG | - | chr4_4:28332949-28332968 | Msa0676910:CDS | 55.0% |
| TGTCCGTAACCCACTTGGGT+TGG | - | chr4_4:28333865-28333884 | Msa0676910:CDS | 55.0% | |
| TAGGAAGCAGCTTCAGCAGC+AGG | - | chr4_4:28334079-28334098 | Msa0676910:CDS | 55.0% | |
| AGGAAGCAGCTTCAGCAGCA+GGG | - | chr4_4:28334080-28334099 | Msa0676910:CDS | 55.0% | |
| AGTCCAGTTGGAGTGCGACA+CGG | + | chr4_4:28334116-28334135 | None:intergenic | 55.0% | |
| CACCAACGTGCACTTTCCAC+CGG | - | chr4_4:28334390-28334409 | Msa0676910:CDS | 55.0% | |
| ! | TTCCGGTGGAAAGTGCACGT+TGG | + | chr4_4:28334395-28334414 | None:intergenic | 55.0% |
| GGGGAAGCAAAAGGGCTATC+AGG | + | chr4_4:28335059-28335078 | None:intergenic | 55.0% | |
| GCTTCCCCTACAAAAGCTGC+TGG | - | chr4_4:28335071-28335090 | Msa0676910:CDS | 55.0% | |
| ATTGGGATGTTTGCCGGCAC+CGG | - | chr4_4:28335370-28335389 | Msa0676910:CDS | 55.0% | |
| !! | GGTGTTGGCATCTTTGGTGG+TGG | + | chr4_4:28335894-28335913 | None:intergenic | 55.0% |
| CTCAGTAGTTACTGCCCCAC+AGG | - | chr4_4:28336036-28336055 | Msa0676910:intron | 55.0% | |
| !! | CGGCCAACCCAAGTGGGTTA+CGG | + | chr4_4:28333871-28333890 | None:intergenic | 60.0% |
| !! | CGTAACCCACTTGGGTTGGC+CGG | - | chr4_4:28333869-28333888 | Msa0676910:CDS | 60.0% |
| ACCATCCGGCCAACCCAAGT+GGG | + | chr4_4:28333877-28333896 | None:intergenic | 60.0% | |
| TACCATCCGGCCAACCCAAG+TGG | + | chr4_4:28333878-28333897 | None:intergenic | 60.0% | |
| TCACCGTGTCGCACTCCAAC+TGG | - | chr4_4:28334110-28334129 | Msa0676910:CDS | 60.0% | |
| !! | ACCCACTTGGGTTGGCCGGA+TGG | - | chr4_4:28333873-28333892 | Msa0676910:CDS | 65.0% |
| ACCAATCGGTCCACCGGTGC+CGG | + | chr4_4:28335386-28335405 | None:intergenic | 65.0% | |
| ! | GGGATGTTTGCCGGCACCGG+TGG | - | chr4_4:28335373-28335392 | Msa0676910:CDS | 70.0% |
| !! | GCCGGCACCGGTGGACCGAT+TGG | - | chr4_4:28335382-28335401 | Msa0676910:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 28331682 | 28336481 | 28331682 | ID=Msa0676910;Name=Msa0676910 |
| chr4_4 | mRNA | 28331682 | 28336481 | 28331682 | ID=Msa0676910-mRNA-1;Parent=Msa0676910;Name=Msa0676910-mRNA-1;_AED=0.10;_eAED=0.10;_QI=477|0.9|0.90|1|0.7|0.54|11|637|685 |
| chr4_4 | exon | 28331682 | 28332292 | 28331682 | ID=Msa0676910-mRNA-1:exon:7454;Parent=Msa0676910-mRNA-1 |
| chr4_4 | exon | 28332332 | 28332341 | 28332332 | ID=Msa0676910-mRNA-1:exon:7453;Parent=Msa0676910-mRNA-1 |
| chr4_4 | exon | 28332736 | 28332815 | 28332736 | ID=Msa0676910-mRNA-1:exon:7452;Parent=Msa0676910-mRNA-1 |
| chr4_4 | exon | 28332917 | 28333129 | 28332917 | ID=Msa0676910-mRNA-1:exon:7451;Parent=Msa0676910-mRNA-1 |
| chr4_4 | exon | 28333360 | 28333537 | 28333360 | ID=Msa0676910-mRNA-1:exon:7450;Parent=Msa0676910-mRNA-1 |
| chr4_4 | exon | 28333659 | 28333904 | 28333659 | ID=Msa0676910-mRNA-1:exon:7449;Parent=Msa0676910-mRNA-1 |
| chr4_4 | exon | 28333993 | 28334132 | 28333993 | ID=Msa0676910-mRNA-1:exon:7448;Parent=Msa0676910-mRNA-1 |
| chr4_4 | exon | 28334344 | 28334523 | 28334344 | ID=Msa0676910-mRNA-1:exon:7447;Parent=Msa0676910-mRNA-1 |
| chr4_4 | exon | 28334618 | 28334800 | 28334618 | ID=Msa0676910-mRNA-1:exon:7446;Parent=Msa0676910-mRNA-1 |
| chr4_4 | exon | 28334898 | 28335924 | 28334898 | ID=Msa0676910-mRNA-1:exon:7445;Parent=Msa0676910-mRNA-1 |
| chr4_4 | exon | 28336178 | 28336481 | 28336178 | ID=Msa0676910-mRNA-1:exon:7444;Parent=Msa0676910-mRNA-1 |
| chr4_4 | five_prime_UTR | 28336178 | 28336481 | 28336178 | ID=Msa0676910-mRNA-1:five_prime_utr;Parent=Msa0676910-mRNA-1 |
| chr4_4 | five_prime_UTR | 28335752 | 28335924 | 28335752 | ID=Msa0676910-mRNA-1:five_prime_utr;Parent=Msa0676910-mRNA-1 |
| chr4_4 | CDS | 28334898 | 28335751 | 28334898 | ID=Msa0676910-mRNA-1:cds;Parent=Msa0676910-mRNA-1 |
| chr4_4 | CDS | 28334618 | 28334800 | 28334618 | ID=Msa0676910-mRNA-1:cds;Parent=Msa0676910-mRNA-1 |
| chr4_4 | CDS | 28334344 | 28334523 | 28334344 | ID=Msa0676910-mRNA-1:cds;Parent=Msa0676910-mRNA-1 |
| chr4_4 | CDS | 28333993 | 28334132 | 28333993 | ID=Msa0676910-mRNA-1:cds;Parent=Msa0676910-mRNA-1 |
| chr4_4 | CDS | 28333659 | 28333904 | 28333659 | ID=Msa0676910-mRNA-1:cds;Parent=Msa0676910-mRNA-1 |
| chr4_4 | CDS | 28333360 | 28333537 | 28333360 | ID=Msa0676910-mRNA-1:cds;Parent=Msa0676910-mRNA-1 |
| chr4_4 | CDS | 28332917 | 28333129 | 28332917 | ID=Msa0676910-mRNA-1:cds;Parent=Msa0676910-mRNA-1 |
| chr4_4 | CDS | 28332752 | 28332815 | 28332752 | ID=Msa0676910-mRNA-1:cds;Parent=Msa0676910-mRNA-1 |
| chr4_4 | three_prime_UTR | 28332736 | 28332751 | 28332736 | ID=Msa0676910-mRNA-1:three_prime_utr;Parent=Msa0676910-mRNA-1 |
| chr4_4 | three_prime_UTR | 28332332 | 28332341 | 28332332 | ID=Msa0676910-mRNA-1:three_prime_utr;Parent=Msa0676910-mRNA-1 |
| chr4_4 | three_prime_UTR | 28331682 | 28332292 | 28331682 | ID=Msa0676910-mRNA-1:three_prime_utr;Parent=Msa0676910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
