Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0638310 | XP_024627631.2 | 95.935 | 492 | 20 | 0 | 1 | 492 | 8 | 499 | 0.0 | 981 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0638310 | sp|Q9SKU6|PP166_ARATH | 40.639 | 438 | 248 | 4 | 18 | 447 | 23 | 456 | 1.99e-116 | 354 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0638310 | A0A072TQ66 | 95.935 | 492 | 20 | 0 | 1 | 492 | 1 | 492 | 0.0 | 980 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0638310 | Msa1171870 | 0.800373 | 1.486028e-48 | -8.615850e-47 |
| Msa0465790 | Msa0638310 | 0.801064 | 1.073681e-48 | -8.615850e-47 |
| Msa0358170 | Msa0638310 | 0.806661 | 7.379533e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0638310 | MtrunA17_Chr4g0021331 | 95.935 | 492 | 20 | 0 | 1 | 492 | 1 | 492 | 0.0 | 980 |
| Msa0638310 | MtrunA17_Chr2g0303221 | 85.542 | 498 | 62 | 5 | 1 | 492 | 1 | 494 | 0.0 | 856 |
| Msa0638310 | MtrunA17_Chr2g0324251 | 50.104 | 479 | 219 | 5 | 2 | 465 | 1 | 474 | 1.81e-150 | 438 |
| Msa0638310 | MtrunA17_Chr8g0359961 | 35.000 | 460 | 286 | 8 | 29 | 482 | 35 | 487 | 2.40e-86 | 274 |
| Msa0638310 | MtrunA17_Chr2g0282091 | 34.615 | 416 | 262 | 7 | 3 | 414 | 4 | 413 | 2.85e-69 | 229 |
| Msa0638310 | MtrunA17_Chr8g0368151 | 31.891 | 439 | 285 | 8 | 5 | 437 | 3 | 433 | 6.40e-69 | 228 |
| Msa0638310 | MtrunA17_Chr1g0185601 | 32.258 | 434 | 280 | 8 | 21 | 447 | 30 | 456 | 1.45e-61 | 209 |
| Msa0638310 | MtrunA17_Chr3g0132571 | 28.702 | 439 | 297 | 8 | 45 | 474 | 55 | 486 | 4.75e-55 | 192 |
| Msa0638310 | MtrunA17_Chr1g0194521 | 30.211 | 427 | 278 | 7 | 16 | 431 | 73 | 490 | 5.92e-55 | 192 |
| Msa0638310 | MtrunA17_Chr1g0155351 | 29.412 | 374 | 243 | 8 | 4 | 360 | 18 | 387 | 5.04e-40 | 149 |
| Msa0638310 | MtrunA17_Chr7g0256181 | 25.576 | 434 | 283 | 13 | 29 | 448 | 160 | 567 | 2.31e-33 | 133 |
| Msa0638310 | MtrunA17_Chr8g0335951 | 28.247 | 308 | 198 | 5 | 151 | 456 | 135 | 421 | 1.04e-31 | 127 |
| Msa0638310 | MtrunA17_Chr8g0335951 | 28.030 | 264 | 149 | 6 | 27 | 260 | 77 | 329 | 2.09e-19 | 90.9 |
| Msa0638310 | MtrunA17_Chr8g0349421 | 32.850 | 207 | 136 | 3 | 252 | 456 | 4 | 209 | 5.75e-27 | 108 |
| Msa0638310 | MtrunA17_Chr1g0171501 | 23.844 | 411 | 285 | 9 | 47 | 448 | 159 | 550 | 8.73e-26 | 110 |
| Msa0638310 | MtrunA17_Chr8g0349431 | 36.975 | 119 | 74 | 1 | 38 | 155 | 4 | 122 | 9.10e-20 | 85.1 |
| Msa0638310 | MtrunA17_Chr2g0328121 | 22.573 | 412 | 304 | 8 | 27 | 431 | 44 | 447 | 3.15e-18 | 87.4 |
| Msa0638310 | MtrunA17_Chr1g0170071 | 24.522 | 314 | 219 | 8 | 130 | 437 | 340 | 641 | 3.34e-14 | 75.5 |
| Msa0638310 | MtrunA17_Chr8g0382891 | 23.324 | 373 | 264 | 12 | 42 | 401 | 67 | 430 | 1.36e-12 | 69.7 |
| Msa0638310 | MtrunA17_Chr7g0257371 | 23.193 | 332 | 212 | 9 | 108 | 400 | 374 | 701 | 2.91e-12 | 69.3 |
| Msa0638310 | MtrunA17_Chr1g0210801 | 22.811 | 434 | 303 | 16 | 5 | 420 | 113 | 532 | 8.70e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0638310 | AT2G20710.1 | 40.639 | 438 | 248 | 4 | 18 | 447 | 23 | 456 | 2.02e-117 | 354 |
| Msa0638310 | AT2G20710.2 | 40.548 | 365 | 211 | 3 | 85 | 447 | 1 | 361 | 1.56e-96 | 297 |
| Msa0638310 | AT1G60770.1 | 34.129 | 419 | 263 | 8 | 27 | 437 | 23 | 436 | 1.97e-70 | 233 |
| Msa0638310 | AT1G02150.1 | 32.379 | 454 | 291 | 9 | 27 | 468 | 67 | 516 | 2.48e-69 | 231 |
| Msa0638310 | AT4G21705.1 | 33.582 | 402 | 255 | 8 | 17 | 412 | 15 | 410 | 8.48e-67 | 223 |
| Msa0638310 | AT5G27460.1 | 31.798 | 456 | 287 | 8 | 6 | 444 | 10 | 458 | 7.85e-66 | 220 |
| Msa0638310 | AT1G28020.1 | 35.955 | 356 | 212 | 5 | 31 | 378 | 40 | 387 | 8.22e-61 | 207 |
| Msa0638310 | AT1G28020.1 | 47.475 | 99 | 49 | 1 | 42 | 140 | 386 | 481 | 3.83e-20 | 93.6 |
| Msa0638310 | AT4G01990.1 | 31.236 | 445 | 279 | 9 | 21 | 450 | 28 | 460 | 4.14e-55 | 192 |
| Msa0638310 | AT4G02820.1 | 28.467 | 411 | 285 | 6 | 47 | 455 | 81 | 484 | 5.24e-52 | 184 |
| Msa0638310 | AT1G02370.1 | 32.012 | 328 | 213 | 7 | 47 | 370 | 91 | 412 | 6.62e-45 | 165 |
| Msa0638310 | AT5G09450.1 | 31.751 | 337 | 225 | 4 | 23 | 356 | 51 | 385 | 4.94e-38 | 144 |
| Msa0638310 | AT1G80270.1 | 29.793 | 386 | 238 | 11 | 29 | 402 | 132 | 496 | 1.12e-36 | 143 |
| Msa0638310 | AT1G80270.3 | 29.793 | 386 | 238 | 11 | 29 | 402 | 132 | 496 | 1.12e-36 | 143 |
| Msa0638310 | AT1G80270.2 | 29.793 | 386 | 238 | 11 | 29 | 402 | 132 | 496 | 1.12e-36 | 143 |
| Msa0638310 | AT1G80270.5 | 29.793 | 386 | 238 | 11 | 29 | 402 | 132 | 496 | 1.12e-36 | 143 |
| Msa0638310 | AT1G80270.4 | 29.793 | 386 | 238 | 11 | 29 | 402 | 132 | 496 | 1.12e-36 | 143 |
| Msa0638310 | AT3G11380.1 | 29.874 | 318 | 178 | 8 | 58 | 368 | 74 | 353 | 3.91e-32 | 129 |
| Msa0638310 | AT3G11380.1 | 33.696 | 184 | 116 | 4 | 42 | 222 | 361 | 541 | 2.61e-19 | 91.3 |
| Msa0638310 | AT1G28000.1 | 29.677 | 310 | 193 | 6 | 15 | 309 | 19 | 318 | 1.16e-31 | 125 |
| Msa0638310 | AT1G15480.1 | 24.297 | 391 | 268 | 7 | 22 | 403 | 124 | 495 | 9.26e-30 | 123 |
| Msa0638310 | AT2G20720.1 | 28.826 | 281 | 167 | 11 | 172 | 437 | 1 | 263 | 1.50e-21 | 95.5 |
| Msa0638310 | AT3G15590.1 | 23.853 | 436 | 311 | 10 | 46 | 474 | 160 | 581 | 7.38e-21 | 96.3 |
| Msa0638310 | AT3G15590.2 | 23.853 | 436 | 311 | 10 | 46 | 474 | 160 | 581 | 7.38e-21 | 96.3 |
| Msa0638310 | AT1G19290.2 | 26.936 | 297 | 203 | 8 | 104 | 395 | 273 | 560 | 3.89e-18 | 88.2 |
| Msa0638310 | AT1G19290.1 | 26.936 | 297 | 203 | 8 | 104 | 395 | 273 | 560 | 3.89e-18 | 88.2 |
| Msa0638310 | AT5G04810.2 | 26.282 | 312 | 218 | 8 | 129 | 437 | 345 | 647 | 1.43e-17 | 86.3 |
| Msa0638310 | AT5G04810.1 | 26.282 | 312 | 218 | 8 | 129 | 437 | 345 | 647 | 1.75e-17 | 86.3 |
| Msa0638310 | AT1G43010.1 | 29.310 | 232 | 148 | 7 | 28 | 255 | 37 | 256 | 3.33e-16 | 79.0 |
| Msa0638310 | AT1G07590.1 | 23.218 | 435 | 319 | 8 | 4 | 431 | 43 | 469 | 9.49e-16 | 80.1 |
| Msa0638310 | AT2G01740.1 | 21.296 | 324 | 247 | 5 | 114 | 434 | 75 | 393 | 2.20e-13 | 72.8 |
| Msa0638310 | AT3G11350.1 | 31.677 | 161 | 88 | 3 | 71 | 227 | 52 | 194 | 1.92e-12 | 68.9 |
| Msa0638310 | AT4G39620.2 | 22.727 | 330 | 236 | 10 | 42 | 361 | 83 | 403 | 2.22e-12 | 69.7 |
| Msa0638310 | AT4G39620.1 | 22.727 | 330 | 236 | 10 | 42 | 361 | 83 | 403 | 3.23e-12 | 69.3 |
| Msa0638310 | AT5G02860.1 | 22.697 | 304 | 221 | 9 | 60 | 355 | 136 | 433 | 8.83e-12 | 68.2 |
| Msa0638310 | AT5G02860.4 | 22.697 | 304 | 221 | 9 | 60 | 355 | 136 | 433 | 8.83e-12 | 68.2 |
| Msa0638310 | AT5G02860.2 | 22.697 | 304 | 221 | 9 | 60 | 355 | 136 | 433 | 8.83e-12 | 68.2 |
| Msa0638310 | AT5G02860.5 | 22.697 | 304 | 221 | 9 | 60 | 355 | 136 | 433 | 8.83e-12 | 68.2 |
| Msa0638310 | AT5G02860.3 | 22.697 | 304 | 221 | 9 | 60 | 355 | 136 | 433 | 8.83e-12 | 68.2 |
| Msa0638310 | AT1G62590.2 | 22.796 | 329 | 236 | 8 | 127 | 449 | 259 | 575 | 1.29e-11 | 67.4 |
| Msa0638310 | AT1G62590.1 | 22.796 | 329 | 236 | 8 | 127 | 449 | 259 | 575 | 1.29e-11 | 67.4 |
| Msa0638310 | AT1G63330.3 | 23.148 | 324 | 231 | 8 | 127 | 444 | 184 | 495 | 4.66e-11 | 65.5 |
| Msa0638310 | AT1G63330.1 | 23.148 | 324 | 231 | 8 | 127 | 444 | 184 | 495 | 4.66e-11 | 65.5 |
| Msa0638310 | AT1G63330.2 | 23.148 | 324 | 231 | 8 | 127 | 444 | 184 | 495 | 4.66e-11 | 65.5 |
Find 104 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACCAAGTCTTGTTCATTAT+TGG | 0.111783 | 4_3:-33340874 | None:intergenic |
| AATATCTGCAAAAGCTTAAA+TGG | 0.198675 | 4_3:+33341284 | Msa0638310:CDS |
| ATACATGCAGCTAAAGTAAA+TGG | 0.212681 | 4_3:-33341638 | None:intergenic |
| AAGGAAAAGGCTAGGGTATA+AGG | 0.244476 | 4_3:-33339348 | None:intergenic |
| AGAAACCTTCATTTATTATC+AGG | 0.259070 | 4_3:+33340663 | Msa0638310:CDS |
| GTAAATTAGATGGAAGAATA+TGG | 0.272444 | 4_3:+33341513 | Msa0638310:CDS |
| TGAATGGAGATTATCATCTT+AGG | 0.278374 | 4_3:+33341810 | Msa0638310:CDS |
| AGGATGATGTGTATAGAATT+TGG | 0.279819 | 4_3:+33341261 | Msa0638310:CDS |
| GTATGCTGCTATTGGGAAAA+AGG | 0.284030 | 4_3:+33341241 | Msa0638310:CDS |
| TCAAAAGATTTCAAGGTCTA+TGG | 0.286344 | 4_3:+33340771 | Msa0638310:CDS |
| CTATCAACGCCTTGTCAAAT+TGG | 0.291657 | 4_3:-33341148 | None:intergenic |
| AGTTGAGATGGAGAAGTTAT+TGG | 0.294619 | 4_3:+33341046 | Msa0638310:CDS |
| CTAACTAAGTATGCTGCTAT+TGG | 0.295443 | 4_3:+33341233 | Msa0638310:CDS |
| AAAAGAGATGGTAAATTAGA+TGG | 0.307752 | 4_3:+33341503 | Msa0638310:CDS |
| AATGATTGGGTCACCGGCTC+TGG | 0.323067 | 4_3:-33339482 | None:intergenic |
| TACAATGAAGAAAGCAATAT+TGG | 0.324291 | 4_3:+33341589 | Msa0638310:CDS |
| ACACACTTCAAAAGATTTCA+AGG | 0.352580 | 4_3:+33340764 | Msa0638310:CDS |
| ATTCTAGAGGAATGGGAATC+TGG | 0.360043 | 4_3:+33341380 | Msa0638310:CDS |
| AGAAAATGCTGAAGTTGATT+AGG | 0.364849 | 4_3:+33339377 | Msa0638310:exon |
| CATGAAAGAAAAGAGAGATT+TGG | 0.367770 | 4_3:+33341667 | Msa0638310:CDS |
| GAGTTGGCATTGGAGATTCT+TGG | 0.376634 | 4_3:+33341689 | Msa0638310:CDS |
| CTATTATAAGTATAACGATA+TGG | 0.383667 | 4_3:+33341553 | Msa0638310:CDS |
| TCCATCAATGTCATTTAGAT+TGG | 0.386004 | 4_3:-33341348 | None:intergenic |
| TTCTGTTAAAGCTCTATTCT+CGG | 0.395487 | 4_3:+33340910 | Msa0638310:CDS |
| GGAGAAGTTATTGGCGAAGA+TGG | 0.400331 | 4_3:+33341055 | Msa0638310:CDS |
| GAGAGATTTGGAGTTGGCAT+TGG | 0.400920 | 4_3:+33341679 | Msa0638310:CDS |
| AAATCTGAACAGTTGATTAG+AGG | 0.401555 | 4_3:+33341179 | Msa0638310:CDS |
| TCCAATCTAAATGACATTGA+TGG | 0.403378 | 4_3:+33341347 | Msa0638310:CDS |
| GCGATACGTCTCTACTTGAT+AGG | 0.404929 | 4_3:+33340693 | Msa0638310:CDS |
| TAAGCACTCACCATCACATT+TGG | 0.407950 | 4_3:-33341428 | None:intergenic |
| ATCACAACATAACTTTGAAC+TGG | 0.418385 | 4_3:+33341084 | Msa0638310:CDS |
| AGTTGGCATTGGAGATTCTT+GGG | 0.423822 | 4_3:+33341690 | Msa0638310:CDS |
| ATAGGAGTCATGGGAATGAT+TGG | 0.435952 | 4_3:-33339496 | None:intergenic |
| TGGAAGAATATGGGATCGTT+TGG | 0.441147 | 4_3:+33341523 | Msa0638310:CDS |
| TAACTAAGTATGCTGCTATT+GGG | 0.452411 | 4_3:+33341234 | Msa0638310:CDS |
| CGCATAAGCATTGAGCCAAC+TGG | 0.453011 | 4_3:-33341009 | None:intergenic |
| CTTGGGACGTGTAGGGAACT+AGG | 0.453871 | 4_3:+33341707 | Msa0638310:CDS |
| CTTCTTGAATCCACTGATTG+AGG | 0.461525 | 4_3:-33339519 | None:intergenic |
| AGGAAAAGGCTAGGGTATAA+GGG | 0.466981 | 4_3:-33339347 | None:intergenic |
| TGTTGCTTCTCTCCATCCGC+TGG | 0.469738 | 4_3:-33341845 | None:intergenic |
| TAGAAATGTAGGTTGAATGC+TGG | 0.477557 | 4_3:-33341310 | None:intergenic |
| TTCCATCGAATTTCCAGAGC+CGG | 0.477596 | 4_3:+33339469 | Msa0638310:CDS |
| TCGCTTCAAACAAGCTCTCC+AGG | 0.478412 | 4_3:+33339600 | Msa0638310:CDS |
| TAAGAATGGAATGTTGGAAA+AGG | 0.480745 | 4_3:+33341454 | Msa0638310:CDS |
| CTGAGACGATTCTAGAGGAA+TGG | 0.485090 | 4_3:+33341372 | Msa0638310:CDS |
| ACGTATTCTGCTGTTGCTGA+TGG | 0.485242 | 4_3:+33341110 | Msa0638310:CDS |
| GTGAGTGCTTATTGTAAGAA+TGG | 0.485975 | 4_3:+33341440 | Msa0638310:CDS |
| TGACATTAACATAGAAATGT+AGG | 0.489387 | 4_3:-33341321 | None:intergenic |
| AATGCATTGAAACTATTGAA+TGG | 0.489872 | 4_3:+33341794 | Msa0638310:CDS |
| AGAAAAGAGAGATTTGGAGT+TGG | 0.495030 | 4_3:+33341673 | Msa0638310:CDS |
| CATGGGAATGATTGGGTCAC+CGG | 0.496625 | 4_3:-33339488 | None:intergenic |
| CTGTTTCAAAGGAAAAGGCT+AGG | 0.496932 | 4_3:-33339356 | None:intergenic |
| TACATGCAGCTAAAGTAAAT+GGG | 0.502567 | 4_3:-33341637 | None:intergenic |
| TGAGACGATTCTAGAGGAAT+GGG | 0.505779 | 4_3:+33341373 | Msa0638310:CDS |
| TAAATTAGATGGAAGAATAT+GGG | 0.509804 | 4_3:+33341514 | Msa0638310:CDS |
| TGGAGATTCTTGGGACGTGT+AGG | 0.512268 | 4_3:+33341699 | Msa0638310:CDS |
| GAAAAGGCAGAAGCATATGT+TGG | 0.512700 | 4_3:+33341470 | Msa0638310:CDS |
| CACAATACAACTCTGTTGAG+AGG | 0.513284 | 4_3:+33340814 | Msa0638310:CDS |
| CTGATTGAGGATAGGAGTCA+TGG | 0.514067 | 4_3:-33339506 | None:intergenic |
| CTCTGGAAATTCGATGGAAG+AGG | 0.517501 | 4_3:-33339465 | None:intergenic |
| TAGGAGTCATGGGAATGATT+GGG | 0.527140 | 4_3:-33339495 | None:intergenic |
| TTAAAGCTCTATTCTCGGAC+AGG | 0.530539 | 4_3:+33340915 | Msa0638310:CDS |
| GGAGATTCTTGGGACGTGTA+GGG | 0.531898 | 4_3:+33341700 | Msa0638310:CDS |
| GACAGGCCAACATGAGAAGT+TGG | 0.534670 | 4_3:+33340932 | Msa0638310:CDS |
| TGTTTCAAAGGAAAAGGCTA+GGG | 0.538459 | 4_3:-33339355 | None:intergenic |
| TACTAGTAACATAGTTGAGA+TGG | 0.538645 | 4_3:+33341034 | Msa0638310:CDS |
| TTCCAATAATGAACAAGACT+TGG | 0.541264 | 4_3:+33340872 | Msa0638310:CDS |
| AGAAATGTAGGTTGAATGCT+GGG | 0.544517 | 4_3:-33341309 | None:intergenic |
| GCTGATGGATATATTAAAGT+TGG | 0.546261 | 4_3:+33341125 | Msa0638310:CDS |
| GCAGCTAAAGTAAATGGGTA+AGG | 0.548795 | 4_3:-33341632 | None:intergenic |
| TGAATCCACTGATTGAGGAT+AGG | 0.548972 | 4_3:-33339514 | None:intergenic |
| CACCGGCTCTGGAAATTCGA+TGG | 0.552751 | 4_3:-33339471 | None:intergenic |
| GAGCTTGTTTGAAGCGACGA+CGG | 0.556117 | 4_3:-33339594 | None:intergenic |
| TATCTCCTGATAATAAATGA+AGG | 0.557018 | 4_3:-33340668 | None:intergenic |
| CTCAATCAGTGGATTCAAGA+AGG | 0.560005 | 4_3:+33339520 | Msa0638310:CDS |
| GGAATGTAAGAGACGAAGAG+TGG | 0.562358 | 4_3:-33339422 | None:intergenic |
| TATTGGCAAGTCCACAAGGA+TGG | 0.562473 | 4_3:+33341606 | Msa0638310:CDS |
| GACGAAGAGTGGTGTTGCAA+TGG | 0.562622 | 4_3:-33339411 | None:intergenic |
| AAAAGGCAGAAGCATATGTT+GGG | 0.563161 | 4_3:+33341471 | Msa0638310:CDS |
| ATTGATGAAGTGCCAGCGGA+TGG | 0.565416 | 4_3:+33341833 | Msa0638310:CDS |
| ATATGGGATCGTTTGGCGCA+TGG | 0.569764 | 4_3:+33341530 | Msa0638310:CDS |
| TTATTGTAAGAATGGAATGT+TGG | 0.576427 | 4_3:+33341448 | Msa0638310:CDS |
| GCTTGTGCTAGGTATCAGAA+TGG | 0.585001 | 4_3:+33340628 | Msa0638310:intron |
| TAAAGTTGGCCAATTTGACA+AGG | 0.588172 | 4_3:+33341139 | Msa0638310:CDS |
| GAGCAACCAACTTCTCATGT+TGG | 0.593793 | 4_3:-33340938 | None:intergenic |
| ACAGTTCCACACTTACCAGT+TGG | 0.593982 | 4_3:+33340994 | Msa0638310:CDS |
| TGAAGTTGATTAGGTCAAGA+TGG | 0.600736 | 4_3:+33339386 | Msa0638310:CDS |
| TGATTGAGGATAGGAGTCAT+GGG | 0.600873 | 4_3:-33339505 | None:intergenic |
| GGGTAAGGTTTCCATCCTTG+TGG | 0.602793 | 4_3:-33341617 | None:intergenic |
| ATAACTTATCAACTCATCAC+AGG | 0.606595 | 4_3:-33341747 | None:intergenic |
| GCAATATTGGCAAGTCCACA+AGG | 0.607044 | 4_3:+33341602 | Msa0638310:CDS |
| TCTGGAAATTCGATGGAAGA+GGG | 0.612349 | 4_3:-33339464 | None:intergenic |
| ACAATACAACTCTGTTGAGA+GGG | 0.624448 | 4_3:+33340815 | Msa0638310:CDS |
| CGATGGAAGAGGGTATCAGT+TGG | 0.624965 | 4_3:-33339454 | None:intergenic |
| GGTATCAGTTGGTGTCGAAG+AGG | 0.642946 | 4_3:-33339443 | None:intergenic |
| TGACTCCTATCCTCAATCAG+TGG | 0.645908 | 4_3:+33339509 | Msa0638310:CDS |
| ATTGAGCCAACTGGTAAGTG+TGG | 0.656328 | 4_3:-33341000 | None:intergenic |
| AGGCAGAAGCATATGTTGGG+AGG | 0.666399 | 4_3:+33341474 | Msa0638310:CDS |
| TAGGATTGATGAAGTGCCAG+CGG | 0.672722 | 4_3:+33341829 | Msa0638310:CDS |
| TGTCAGAATTCCAAATGTGA+TGG | 0.676634 | 4_3:+33341418 | Msa0638310:CDS |
| TGGAGCTGAGACGATTCTAG+AGG | 0.681337 | 4_3:+33341367 | Msa0638310:CDS |
| TCTCTGCTTGATCTAGACCG+CGG | 0.698359 | 4_3:-33340722 | None:intergenic |
| GAGTTGATAAGTTATGTGCA+AGG | 0.716101 | 4_3:+33341755 | Msa0638310:CDS |
| TACTTGATAGGTAAAGTCCG+CGG | 0.736005 | 4_3:+33340705 | Msa0638310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAACTATAATAATTTGAA+GGG | - | chr4_3:33339700-33339719 | None:intergenic | 10.0% |
| !! | AAAAAAAAATCATTATTTGT+AGG | + | chr4_3:33339778-33339797 | Msa0638310:intron | 10.0% |
| !!! | TTATTTTTTTTGAAAAAATG+TGG | + | chr4_3:33340467-33340486 | Msa0638310:intron | 10.0% |
| !! | CATTAACTATAATAATTTGA+AGG | - | chr4_3:33339701-33339720 | None:intergenic | 15.0% |
| !!! | ATTTTTATGATAAGTTACTT+AGG | - | chr4_3:33340244-33340263 | None:intergenic | 15.0% |
| !! | TCATTATATATTTATCAGAG+TGG | - | chr4_3:33340084-33340103 | None:intergenic | 20.0% |
| !!! | TTAAGTACTGATAAACTTTT+GGG | + | chr4_3:33340328-33340347 | Msa0638310:intron | 20.0% |
| !!! | ACTTATGTGTTTATAACTTT+TGG | + | chr4_3:33340354-33340373 | Msa0638310:intron | 20.0% |
| !! | TTCTTTATGAAATGTTGTAT+AGG | - | chr4_3:33340420-33340439 | None:intergenic | 20.0% |
| !! | ACTGATATGTAAAAACTAAA+AGG | + | chr4_3:33340505-33340524 | Msa0638310:intron | 20.0% |
| !! | GCAAAACAAATTCTTAAAAT+AGG | - | chr4_3:33340610-33340629 | None:intergenic | 20.0% |
| !! | TAAATTAGATGGAAGAATAT+GGG | + | chr4_3:33341514-33341533 | Msa0638310:CDS | 20.0% |
| !! | CTATTATAAGTATAACGATA+TGG | + | chr4_3:33341553-33341572 | Msa0638310:CDS | 20.0% |
| !! | ATTTTCTGTTTCAAAGGAAA+AGG | - | chr4_3:33339364-33339383 | None:intergenic | 25.0% |
| ! | ACCATTTGGTTATGTTATAA+GGG | + | chr4_3:33339741-33339760 | Msa0638310:intron | 25.0% |
| !! | ATAATTTTCCTTGTGTAAGT+TGG | + | chr4_3:33339803-33339822 | Msa0638310:intron | 25.0% |
| !! | AAGTGACAAATCATTCATTT+TGG | - | chr4_3:33339899-33339918 | None:intergenic | 25.0% |
| ! | ATAAGTTACTTAGGTAAGAT+GGG | - | chr4_3:33340235-33340254 | None:intergenic | 25.0% |
| !!! | CTTAAGTACTGATAAACTTT+TGG | + | chr4_3:33340327-33340346 | Msa0638310:intron | 25.0% |
| !! | TTTATAACTTTTGGACCATT+GGG | + | chr4_3:33340363-33340382 | Msa0638310:intron | 25.0% |
| ! | AGAAACCTTCATTTATTATC+AGG | + | chr4_3:33340663-33340682 | Msa0638310:CDS | 25.0% |
| ! | TATCTCCTGATAATAAATGA+AGG | - | chr4_3:33340671-33340690 | None:intergenic | 25.0% |
| ! | AATATCTGCAAAAGCTTAAA+TGG | + | chr4_3:33341284-33341303 | Msa0638310:CDS | 25.0% |
| ! | TGACATTAACATAGAAATGT+AGG | - | chr4_3:33341324-33341343 | None:intergenic | 25.0% |
| ! | TTATTGTAAGAATGGAATGT+TGG | + | chr4_3:33341448-33341467 | Msa0638310:CDS | 25.0% |
| ! | AAAAGAGATGGTAAATTAGA+TGG | + | chr4_3:33341503-33341522 | Msa0638310:CDS | 25.0% |
| ! | GTAAATTAGATGGAAGAATA+TGG | + | chr4_3:33341513-33341532 | Msa0638310:CDS | 25.0% |
| ! | TACAATGAAGAAAGCAATAT+TGG | + | chr4_3:33341589-33341608 | Msa0638310:CDS | 25.0% |
| ! | AATGCATTGAAACTATTGAA+TGG | + | chr4_3:33341794-33341813 | Msa0638310:CDS | 25.0% |
| ! | TTCAGCATTTTCTGTTTCAA+AGG | - | chr4_3:33339370-33339389 | None:intergenic | 30.0% |
| ! | AGAAAATGCTGAAGTTGATT+AGG | + | chr4_3:33339377-33339396 | Msa0638310:exon | 30.0% |
| TGAAAAACTGTAACTCAGAA+TGG | - | chr4_3:33339558-33339577 | None:intergenic | 30.0% | |
| TAATGTTACATTCCACCATT+TGG | + | chr4_3:33339727-33339746 | Msa0638310:intron | 30.0% | |
| CTTATAACATAACCAAATGG+TGG | - | chr4_3:33339742-33339761 | None:intergenic | 30.0% | |
| CACCATTTGGTTATGTTATA+AGG | + | chr4_3:33339740-33339759 | Msa0638310:intron | 30.0% | |
| TCCCTTATAACATAACCAAA+TGG | - | chr4_3:33339745-33339764 | None:intergenic | 30.0% | |
| TTGGTTATGTTATAAGGGAA+CGG | + | chr4_3:33339746-33339765 | Msa0638310:intron | 30.0% | |
| ! | AGCTATTATCGCTACTATTT+TGG | - | chr4_3:33340019-33340038 | None:intergenic | 30.0% |
| GATAAGTTACTTAGGTAAGA+TGG | - | chr4_3:33340236-33340255 | None:intergenic | 30.0% | |
| CCAATACAGAGAAATATTCA+TGG | - | chr4_3:33340289-33340308 | None:intergenic | 30.0% | |
| CCATGAATATTTCTCTGTAT+TGG | + | chr4_3:33340286-33340305 | Msa0638310:intron | 30.0% | |
| ! | GTTTATAACTTTTGGACCAT+TGG | + | chr4_3:33340362-33340381 | Msa0638310:intron | 30.0% |
| CTTAAAAACAAGCATATGAG+AGG | - | chr4_3:33340567-33340586 | None:intergenic | 30.0% | |
| !!! | TTGAAATCTTTTGAAGTGTG+TGG | - | chr4_3:33340765-33340784 | None:intergenic | 30.0% |
| ACACACTTCAAAAGATTTCA+AGG | + | chr4_3:33340764-33340783 | Msa0638310:CDS | 30.0% | |
| TCAAAAGATTTCAAGGTCTA+TGG | + | chr4_3:33340771-33340790 | Msa0638310:CDS | 30.0% | |
| TTCCAATAATGAACAAGACT+TGG | + | chr4_3:33340872-33340891 | Msa0638310:CDS | 30.0% | |
| !! | TACCAAGTCTTGTTCATTAT+TGG | - | chr4_3:33340877-33340896 | None:intergenic | 30.0% |
| TTCTGTTAAAGCTCTATTCT+CGG | + | chr4_3:33340910-33340929 | Msa0638310:CDS | 30.0% | |
| TACTAGTAACATAGTTGAGA+TGG | + | chr4_3:33341034-33341053 | Msa0638310:CDS | 30.0% | |
| ATCACAACATAACTTTGAAC+TGG | + | chr4_3:33341084-33341103 | Msa0638310:CDS | 30.0% | |
| ! | GCTGATGGATATATTAAAGT+TGG | + | chr4_3:33341125-33341144 | Msa0638310:CDS | 30.0% |
| AAATCTGAACAGTTGATTAG+AGG | + | chr4_3:33341179-33341198 | Msa0638310:CDS | 30.0% | |
| TAACTAAGTATGCTGCTATT+GGG | + | chr4_3:33341234-33341253 | Msa0638310:CDS | 30.0% | |
| AGGATGATGTGTATAGAATT+TGG | + | chr4_3:33341261-33341280 | Msa0638310:CDS | 30.0% | |
| TCCAATCTAAATGACATTGA+TGG | + | chr4_3:33341347-33341366 | Msa0638310:CDS | 30.0% | |
| ! | TCCATCAATGTCATTTAGAT+TGG | - | chr4_3:33341351-33341370 | None:intergenic | 30.0% |
| TAAGAATGGAATGTTGGAAA+AGG | + | chr4_3:33341454-33341473 | Msa0638310:CDS | 30.0% | |
| TACATGCAGCTAAAGTAAAT+GGG | - | chr4_3:33341640-33341659 | None:intergenic | 30.0% | |
| ATACATGCAGCTAAAGTAAA+TGG | - | chr4_3:33341641-33341660 | None:intergenic | 30.0% | |
| CATGAAAGAAAAGAGAGATT+TGG | + | chr4_3:33341667-33341686 | Msa0638310:CDS | 30.0% | |
| ATAACTTATCAACTCATCAC+AGG | - | chr4_3:33341750-33341769 | None:intergenic | 30.0% | |
| TGAATGGAGATTATCATCTT+AGG | + | chr4_3:33341810-33341829 | Msa0638310:CDS | 30.0% | |
| TGTTTCAAAGGAAAAGGCTA+GGG | - | chr4_3:33339358-33339377 | None:intergenic | 35.0% | |
| ! | TGAAGTTGATTAGGTCAAGA+TGG | + | chr4_3:33339386-33339405 | Msa0638310:CDS | 35.0% |
| GTGAATTGTGGATGTAGTAT+CGG | + | chr4_3:33339836-33339855 | Msa0638310:intron | 35.0% | |
| TGAATTGTGGATGTAGTATC+GGG | + | chr4_3:33339837-33339856 | Msa0638310:intron | 35.0% | |
| !! | TTCTATGTGCCAATTTTGGT+GGG | - | chr4_3:33339947-33339966 | None:intergenic | 35.0% |
| !!! | CTACTATTTTGGTGTTGACT+TGG | - | chr4_3:33340008-33340027 | None:intergenic | 35.0% |
| GCTATAGAAGTTCGATAAGA+AGG | + | chr4_3:33340036-33340055 | Msa0638310:intron | 35.0% | |
| ATAGGTGAGATGAGTCTTTA+GGG | - | chr4_3:33340402-33340421 | None:intergenic | 35.0% | |
| TATAGGTGAGATGAGTCTTT+AGG | - | chr4_3:33340403-33340422 | None:intergenic | 35.0% | |
| !!! | GAATTTGTTTTGCTTGTGCT+AGG | + | chr4_3:33340617-33340636 | Msa0638310:intron | 35.0% |
| ACAATACAACTCTGTTGAGA+GGG | + | chr4_3:33340815-33340834 | Msa0638310:CDS | 35.0% | |
| AGTTGAGATGGAGAAGTTAT+TGG | + | chr4_3:33341046-33341065 | Msa0638310:CDS | 35.0% | |
| TAAAGTTGGCCAATTTGACA+AGG | + | chr4_3:33341139-33341158 | Msa0638310:CDS | 35.0% | |
| CTAACTAAGTATGCTGCTAT+TGG | + | chr4_3:33341233-33341252 | Msa0638310:CDS | 35.0% | |
| ! | AGAAATGTAGGTTGAATGCT+GGG | - | chr4_3:33341312-33341331 | None:intergenic | 35.0% |
| ! | TAGAAATGTAGGTTGAATGC+TGG | - | chr4_3:33341313-33341332 | None:intergenic | 35.0% |
| TGTCAGAATTCCAAATGTGA+TGG | + | chr4_3:33341418-33341437 | Msa0638310:CDS | 35.0% | |
| GTGAGTGCTTATTGTAAGAA+TGG | + | chr4_3:33341440-33341459 | Msa0638310:CDS | 35.0% | |
| ! | AAAAGGCAGAAGCATATGTT+GGG | + | chr4_3:33341471-33341490 | Msa0638310:CDS | 35.0% |
| ! | AGAAAAGAGAGATTTGGAGT+TGG | + | chr4_3:33341673-33341692 | Msa0638310:CDS | 35.0% |
| !! | GAGTTGATAAGTTATGTGCA+AGG | + | chr4_3:33341755-33341774 | Msa0638310:CDS | 35.0% |
| AGGAAAAGGCTAGGGTATAA+GGG | - | chr4_3:33339350-33339369 | None:intergenic | 40.0% | |
| AAGGAAAAGGCTAGGGTATA+AGG | - | chr4_3:33339351-33339370 | None:intergenic | 40.0% | |
| CTGTTTCAAAGGAAAAGGCT+AGG | - | chr4_3:33339359-33339378 | None:intergenic | 40.0% | |
| TCTGGAAATTCGATGGAAGA+GGG | - | chr4_3:33339467-33339486 | None:intergenic | 40.0% | |
| TAGGAGTCATGGGAATGATT+GGG | - | chr4_3:33339498-33339517 | None:intergenic | 40.0% | |
| ATAGGAGTCATGGGAATGAT+TGG | - | chr4_3:33339499-33339518 | None:intergenic | 40.0% | |
| TGATTGAGGATAGGAGTCAT+GGG | - | chr4_3:33339508-33339527 | None:intergenic | 40.0% | |
| ! | TGAATCCACTGATTGAGGAT+AGG | - | chr4_3:33339517-33339536 | None:intergenic | 40.0% |
| ! | CTTCTTGAATCCACTGATTG+AGG | - | chr4_3:33339522-33339541 | None:intergenic | 40.0% |
| ! | CTCAATCAGTGGATTCAAGA+AGG | + | chr4_3:33339520-33339539 | Msa0638310:CDS | 40.0% |
| GACTGAAACAAGAGAGAAAG+AGG | - | chr4_3:33339627-33339646 | None:intergenic | 40.0% | |
| TCGAGAAACCAACTTACACA+AGG | - | chr4_3:33339814-33339833 | None:intergenic | 40.0% | |
| GGTTTCTCGAAAGTGAATTG+TGG | + | chr4_3:33339824-33339843 | Msa0638310:intron | 40.0% | |
| ! | GGATGTAGTATCGGGAAATA+AGG | + | chr4_3:33339845-33339864 | Msa0638310:intron | 40.0% |
| TCAAACTAGCCCACCAAAAT+TGG | + | chr4_3:33339935-33339954 | Msa0638310:intron | 40.0% | |
| ! | GTTCTATGTGCCAATTTTGG+TGG | - | chr4_3:33339948-33339967 | None:intergenic | 40.0% |
| ! | TCGGTTCTATGTGCCAATTT+TGG | - | chr4_3:33339951-33339970 | None:intergenic | 40.0% |
| TAAACTCAAGGTCTCACGTT+CGG | - | chr4_3:33339970-33339989 | None:intergenic | 40.0% | |
| CTTGGAGTGTGATAAACTCA+AGG | - | chr4_3:33339982-33340001 | None:intergenic | 40.0% | |
| CTTGAGTTTATCACACTCCA+AGG | + | chr4_3:33339980-33339999 | Msa0638310:intron | 40.0% | |
| TCTTACCCACGTCCTTATAT+CGG | - | chr4_3:33340155-33340174 | None:intergenic | 40.0% | |
| CTTAGGTAAGATGGGACTTA+GGG | - | chr4_3:33340227-33340246 | None:intergenic | 40.0% | |
| ACTTAGGTAAGATGGGACTT+AGG | - | chr4_3:33340228-33340247 | None:intergenic | 40.0% | |
| TACTTGATAGGTAAAGTCCG+CGG | + | chr4_3:33340705-33340724 | Msa0638310:CDS | 40.0% | |
| CACAATACAACTCTGTTGAG+AGG | + | chr4_3:33340814-33340833 | Msa0638310:CDS | 40.0% | |
| TTAAAGCTCTATTCTCGGAC+AGG | + | chr4_3:33340915-33340934 | Msa0638310:CDS | 40.0% | |
| CTATCAACGCCTTGTCAAAT+TGG | - | chr4_3:33341151-33341170 | None:intergenic | 40.0% | |
| GTATGCTGCTATTGGGAAAA+AGG | + | chr4_3:33341241-33341260 | Msa0638310:CDS | 40.0% | |
| ! | TGAGACGATTCTAGAGGAAT+GGG | + | chr4_3:33341373-33341392 | Msa0638310:CDS | 40.0% |
| ! | ATTCTAGAGGAATGGGAATC+TGG | + | chr4_3:33341380-33341399 | Msa0638310:CDS | 40.0% |
| TAAGCACTCACCATCACATT+TGG | - | chr4_3:33341431-33341450 | None:intergenic | 40.0% | |
| ! | GAAAAGGCAGAAGCATATGT+TGG | + | chr4_3:33341470-33341489 | Msa0638310:CDS | 40.0% |
| !! | GGGAGGCTTTTAAAAAGAGA+TGG | + | chr4_3:33341491-33341510 | Msa0638310:CDS | 40.0% |
| TGGAAGAATATGGGATCGTT+TGG | + | chr4_3:33341523-33341542 | Msa0638310:CDS | 40.0% | |
| GCAGCTAAAGTAAATGGGTA+AGG | - | chr4_3:33341635-33341654 | None:intergenic | 40.0% | |
| ! | AGTTGGCATTGGAGATTCTT+GGG | + | chr4_3:33341690-33341709 | Msa0638310:CDS | 40.0% |
| GGAATGTAAGAGACGAAGAG+TGG | - | chr4_3:33339425-33339444 | None:intergenic | 45.0% | |
| ! | CTCTGGAAATTCGATGGAAG+AGG | - | chr4_3:33339468-33339487 | None:intergenic | 45.0% |
| TTCCATCGAATTTCCAGAGC+CGG | + | chr4_3:33339469-33339488 | Msa0638310:CDS | 45.0% | |
| CTGATTGAGGATAGGAGTCA+TGG | - | chr4_3:33339509-33339528 | None:intergenic | 45.0% | |
| TGACTCCTATCCTCAATCAG+TGG | + | chr4_3:33339509-33339528 | Msa0638310:CDS | 45.0% | |
| AACAAGAGAGAAAGAGGACC+TGG | - | chr4_3:33339621-33339640 | None:intergenic | 45.0% | |
| !! | TTGGTGTTGACTTGGAACCT+TGG | - | chr4_3:33340000-33340019 | None:intergenic | 45.0% |
| TCAGAGTGGCAAATCAGTCA+AGG | - | chr4_3:33340070-33340089 | None:intergenic | 45.0% | |
| ! | TACCTCTTCTACGAGCATTG+AGG | + | chr4_3:33340181-33340200 | Msa0638310:intron | 45.0% |
| !! | ACCTCTTCTACGAGCATTGA+GGG | + | chr4_3:33340182-33340201 | Msa0638310:intron | 45.0% |
| !! | TGAGTCTTTAGGGTTCAGCA+TGG | - | chr4_3:33340392-33340411 | None:intergenic | 45.0% |
| GCTTGTGCTAGGTATCAGAA+TGG | + | chr4_3:33340628-33340647 | Msa0638310:intron | 45.0% | |
| GCGATACGTCTCTACTTGAT+AGG | + | chr4_3:33340693-33340712 | Msa0638310:CDS | 45.0% | |
| GAGCAACCAACTTCTCATGT+TGG | - | chr4_3:33340941-33340960 | None:intergenic | 45.0% | |
| ACAGTTCCACACTTACCAGT+TGG | + | chr4_3:33340994-33341013 | Msa0638310:CDS | 45.0% | |
| ATTGAGCCAACTGGTAAGTG+TGG | - | chr4_3:33341003-33341022 | None:intergenic | 45.0% | |
| GGAGAAGTTATTGGCGAAGA+TGG | + | chr4_3:33341055-33341074 | Msa0638310:CDS | 45.0% | |
| ACGTATTCTGCTGTTGCTGA+TGG | + | chr4_3:33341110-33341129 | Msa0638310:CDS | 45.0% | |
| ! | CTGAGACGATTCTAGAGGAA+TGG | + | chr4_3:33341372-33341391 | Msa0638310:CDS | 45.0% |
| GCAATATTGGCAAGTCCACA+AGG | + | chr4_3:33341602-33341621 | Msa0638310:CDS | 45.0% | |
| TATTGGCAAGTCCACAAGGA+TGG | + | chr4_3:33341606-33341625 | Msa0638310:CDS | 45.0% | |
| ! | GAGAGATTTGGAGTTGGCAT+TGG | + | chr4_3:33341679-33341698 | Msa0638310:CDS | 45.0% |
| ! | GAGTTGGCATTGGAGATTCT+TGG | + | chr4_3:33341689-33341708 | Msa0638310:CDS | 45.0% |
| ! | TAGGATTGATGAAGTGCCAG+CGG | + | chr4_3:33341829-33341848 | Msa0638310:CDS | 45.0% |
| !! | GACGAAGAGTGGTGTTGCAA+TGG | - | chr4_3:33339414-33339433 | None:intergenic | 50.0% |
| !! | GGTATCAGTTGGTGTCGAAG+AGG | - | chr4_3:33339446-33339465 | None:intergenic | 50.0% |
| !! | CGATGGAAGAGGGTATCAGT+TGG | - | chr4_3:33339457-33339476 | None:intergenic | 50.0% |
| CATGGGAATGATTGGGTCAC+CGG | - | chr4_3:33339491-33339510 | None:intergenic | 50.0% | |
| ! | GAGCTTGTTTGAAGCGACGA+CGG | - | chr4_3:33339597-33339616 | None:intergenic | 50.0% |
| TCGCTTCAAACAAGCTCTCC+AGG | + | chr4_3:33339600-33339619 | Msa0638310:CDS | 50.0% | |
| CGAATCCCGCTACCGATATA+AGG | + | chr4_3:33340140-33340159 | Msa0638310:intron | 50.0% | |
| CACGTCCTTATATCGGTAGC+GGG | - | chr4_3:33340148-33340167 | None:intergenic | 50.0% | |
| CCACGTCCTTATATCGGTAG+CGG | - | chr4_3:33340149-33340168 | None:intergenic | 50.0% | |
| CGCTACCGATATAAGGACGT+GGG | + | chr4_3:33340147-33340166 | Msa0638310:intron | 50.0% | |
| ACCCTCAATGCTCGTAGAAG+AGG | - | chr4_3:33340186-33340205 | None:intergenic | 50.0% | |
| ATGGGACTTAGGGTTCACGA+TGG | - | chr4_3:33340217-33340236 | None:intergenic | 50.0% | |
| !! | GTCTTTAGGGTTCAGCATGG+AGG | - | chr4_3:33340389-33340408 | None:intergenic | 50.0% |
| TCTCTGCTTGATCTAGACCG+CGG | - | chr4_3:33340725-33340744 | None:intergenic | 50.0% | |
| GACAGGCCAACATGAGAAGT+TGG | + | chr4_3:33340932-33340951 | Msa0638310:CDS | 50.0% | |
| !! | CGCATAAGCATTGAGCCAAC+TGG | - | chr4_3:33341012-33341031 | None:intergenic | 50.0% |
| TGGAGCTGAGACGATTCTAG+AGG | + | chr4_3:33341367-33341386 | Msa0638310:CDS | 50.0% | |
| ! | AGGCAGAAGCATATGTTGGG+AGG | + | chr4_3:33341474-33341493 | Msa0638310:CDS | 50.0% |
| ATATGGGATCGTTTGGCGCA+TGG | + | chr4_3:33341530-33341549 | Msa0638310:CDS | 50.0% | |
| GGGTAAGGTTTCCATCCTTG+TGG | - | chr4_3:33341620-33341639 | None:intergenic | 50.0% | |
| TGGAGATTCTTGGGACGTGT+AGG | + | chr4_3:33341699-33341718 | Msa0638310:CDS | 50.0% | |
| GGAGATTCTTGGGACGTGTA+GGG | + | chr4_3:33341700-33341719 | Msa0638310:CDS | 50.0% | |
| ! | ATTGATGAAGTGCCAGCGGA+TGG | + | chr4_3:33341833-33341852 | Msa0638310:CDS | 50.0% |
| !! | CACCGGCTCTGGAAATTCGA+TGG | - | chr4_3:33339474-33339493 | None:intergenic | 55.0% |
| !! | AATGATTGGGTCACCGGCTC+TGG | - | chr4_3:33339485-33339504 | None:intergenic | 55.0% |
| CCGCTACCGATATAAGGACG+TGG | + | chr4_3:33340146-33340165 | Msa0638310:intron | 55.0% | |
| CTTGGGACGTGTAGGGAACT+AGG | + | chr4_3:33341707-33341726 | Msa0638310:CDS | 55.0% | |
| ! | TGTTGCTTCTCTCCATCCGC+TGG | - | chr4_3:33341848-33341867 | None:intergenic | 55.0% |
| GGTTCAGCATGGAGGCCCAA+TGG | - | chr4_3:33340381-33340400 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 33339300 | 33341877 | 33339300 | ID=Msa0638310;Name=Msa0638310 |
| chr4_3 | mRNA | 33339300 | 33341877 | 33339300 | ID=Msa0638310-mRNA-1;Parent=Msa0638310;Name=Msa0638310-mRNA-1;_AED=0.00;_eAED=0.00;_QI=82|1|0.5|1|1|1|2|0|492 |
| chr4_3 | exon | 33339300 | 33339621 | 33339300 | ID=Msa0638310-mRNA-1:exon:7577;Parent=Msa0638310-mRNA-1 |
| chr4_3 | exon | 33340639 | 33341877 | 33340639 | ID=Msa0638310-mRNA-1:exon:7578;Parent=Msa0638310-mRNA-1 |
| chr4_3 | five_prime_UTR | 33339300 | 33339381 | 33339300 | ID=Msa0638310-mRNA-1:five_prime_utr;Parent=Msa0638310-mRNA-1 |
| chr4_3 | CDS | 33339382 | 33339621 | 33339382 | ID=Msa0638310-mRNA-1:cds;Parent=Msa0638310-mRNA-1 |
| chr4_3 | CDS | 33340639 | 33341877 | 33340639 | ID=Msa0638310-mRNA-1:cds;Parent=Msa0638310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
