AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0465790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0465790 MtrunA17_Chr3g0116321 98.551 207 2 1 1 206 462 668 1.25e-142 412
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0465790 AT3G48500.1 75.172 145 36 0 1 145 463 607 2.30e-70 226
Msa0465790 AT3G48500.2 75.172 145 36 0 1 145 492 636 4.02e-70 226

Find 49 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCTTCCATAGTTTCTTA+TGG 0.175288 3_3:+66258275 None:intergenic
TCGGATCAAATTCATGTTAA+TGG 0.194739 3_3:-66257696 Msa0465790:CDS
TGCCCACAATTGATTTGTTA+TGG 0.269036 3_3:+66257883 None:intergenic
TAGCGATACAGAGGACTTTC+AGG 0.270401 3_3:+66257966 None:intergenic
TCTGTATCGCTATGACTATT+GGG 0.278078 3_3:-66257955 Msa0465790:CDS
CTCTGTATCGCTATGACTAT+TGG 0.305129 3_3:-66257956 Msa0465790:CDS
GCCCACAATTGATTTGTTAT+GGG 0.339910 3_3:+66257884 None:intergenic
CGGATCAAATTCATGTTAAT+GGG 0.375652 3_3:-66257695 Msa0465790:CDS
TGTTAAAGAGCTGGACTTAG+AGG 0.378218 3_3:-66258740 Msa0465790:CDS
TACAGCTCCATAAGAAACTA+TGG 0.413741 3_3:-66258282 Msa0465790:intron
TGAGTAAAATGTGTACAGTT+AGG 0.418331 3_3:-66257611 Msa0465790:three_prime_UTR
TTTGCAGTGTAGAAACACTA+TGG 0.430578 3_3:-66257569 Msa0465790:three_prime_UTR
CTAGCATCAACATACCTTCC+TGG 0.436065 3_3:+66258014 None:intergenic
TTTCGCAGTCGTAAAACTCT+TGG 0.437285 3_3:-66258053 Msa0465790:intron
GTCATCGTCCTCTTCTTCTT+CGG 0.451280 3_3:+66257770 None:intergenic
AAAATTCATATTATCTGTCT+CGG 0.477319 3_3:-66257520 Msa0465790:three_prime_UTR
TTCAGCATTCTGAGCAGTCT+TGG 0.493173 3_3:-66257729 Msa0465790:CDS
TACCCATAACAAATCAATTG+TGG 0.505792 3_3:-66257886 Msa0465790:CDS
TAAAACTCTTGGTCTGCCAT+TGG 0.506661 3_3:-66258042 Msa0465790:CDS
GAAAACAAGTGTTAAAGAGC+TGG 0.511285 3_3:-66258749 Msa0465790:CDS
TAACAAATCAATTGTGGGCA+AGG 0.516562 3_3:-66257880 Msa0465790:CDS
ACCCATAACAAATCAATTGT+GGG 0.524675 3_3:-66257885 Msa0465790:CDS
CCAAGAATTCAGAAAAGAGC+AGG 0.528268 3_3:-66257926 Msa0465790:CDS
GTCAGATGAAGGTGTGTTTG+AGG 0.528608 3_3:-66257655 Msa0465790:CDS
TGGAAGGAAGCAAAGGATAG+AGG 0.530783 3_3:-66258262 Msa0465790:CDS
ATGAATATGATTTCATGCAT+TGG 0.539326 3_3:-66258195 Msa0465790:CDS
CAGAAAAGAGCAGGAAAGAG+AGG 0.542840 3_3:-66257917 Msa0465790:CDS
TTGTGGGCAAGGGTACTGTT+TGG 0.543222 3_3:-66257869 Msa0465790:CDS
TACCTTCCTGGCTCTTCCAA+TGG 0.543238 3_3:+66258026 None:intergenic
ACTTCTAGATTGTCAGATGA+AGG 0.543319 3_3:-66257666 Msa0465790:CDS
CTGTATCGCTATGACTATTG+GGG 0.545934 3_3:-66257954 Msa0465790:CDS
TGAAGCTGCCGAAGAAGAAG+AGG 0.552730 3_3:-66257778 Msa0465790:CDS
CAGTCTTGGTACTAATGCCT+CGG 0.561687 3_3:-66257715 Msa0465790:CDS
GAGGACTTTCAGGATCATAC+TGG 0.569600 3_3:+66257976 None:intergenic
CATTGATCAGAGACATCAGC+TGG 0.577556 3_3:-66258147 Msa0465790:intron
AACAAATCAATTGTGGGCAA+GGG 0.585346 3_3:-66257879 Msa0465790:CDS
GAAACTATGGAAGGAAGCAA+AGG 0.590045 3_3:-66258269 Msa0465790:CDS
TGCCATTGGAAGAGCCAGGA+AGG 0.593450 3_3:-66258028 Msa0465790:CDS
GGCTGCACTTGCTGAGCGTG+AGG 0.597650 3_3:-66258719 Msa0465790:intron
ATTGAAGCGCAATATTGAGA+TGG 0.601634 3_3:-66258218 Msa0465790:CDS
GGTCTGCCATTGGAAGAGCC+AGG 0.606197 3_3:-66258032 Msa0465790:CDS
ATTGACACCAACGATAGGCT+AGG 0.620208 3_3:+66257455 None:intergenic
GGAAGCAAAGGATAGAGGTG+AGG 0.624007 3_3:-66258257 Msa0465790:CDS
GCTCCATAAGAAACTATGGA+AGG 0.637472 3_3:-66258278 Msa0465790:CDS
TGTATCGCTATGACTATTGG+GGG 0.659654 3_3:-66257953 Msa0465790:CDS
GTTGACGAGTATTCAAAGCA+AGG 0.659920 3_3:-66257801 Msa0465790:CDS
ATTAACATGAATTTGATCCG+AGG 0.664175 3_3:+66257698 None:intergenic
CAATAGTCATAGCGATACAG+AGG 0.690983 3_3:+66257957 None:intergenic
GTATCGCTATGACTATTGGG+GGG 0.713157 3_3:-66257952 Msa0465790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAATATTTTCTTGTTAT+TGG - chr3_3:66257544-66257563 Msa0465790:three_prime_UTR 10.0%
!!! TAAAAATATTTTCTTGTTAT+TGG - chr3_3:66257544-66257563 Msa0465790:three_prime_UTR 10.0%
!! ATATCAAGCTTATGAAAAAA+GGG + chr3_3:66257659-66257678 None:intergenic 20.0%
!! GAAAATTATCAAACAATCAT+AGG + chr3_3:66257765-66257784 None:intergenic 20.0%
!! TAAGACTTCAGTTTAATATA+AGG - chr3_3:66257863-66257882 Msa0465790:CDS 20.0%
!! AAAATTCATATTATCTGTCT+CGG - chr3_3:66258697-66258716 Msa0465790:intron 20.0%
!! ATATCAAGCTTATGAAAAAA+GGG + chr3_3:66257659-66257678 None:intergenic 20.0%
!! GAAAATTATCAAACAATCAT+AGG + chr3_3:66257765-66257784 None:intergenic 20.0%
!! TAAGACTTCAGTTTAATATA+AGG - chr3_3:66257863-66257882 Msa0465790:CDS 20.0%
!! AAAATTCATATTATCTGTCT+CGG - chr3_3:66258697-66258716 Msa0465790:intron 20.0%
! GATATCAAGCTTATGAAAAA+AGG + chr3_3:66257660-66257679 None:intergenic 25.0%
!!! CTTAAAAGTTGGTAAGATTT+TGG + chr3_3:66257718-66257737 None:intergenic 25.0%
! GAAGTACATTTCTTAAAAGT+TGG + chr3_3:66257729-66257748 None:intergenic 25.0%
! AATATCCATAACAAGACAAA+AGG + chr3_3:66257800-66257819 None:intergenic 25.0%
! ATGAATATGATTTCATGCAT+TGG - chr3_3:66258022-66258041 Msa0465790:CDS 25.0%
!!! TATGTTGATGCTAGTTTTTT+TGG - chr3_3:66258212-66258231 Msa0465790:CDS 25.0%
! GATATCAAGCTTATGAAAAA+AGG + chr3_3:66257660-66257679 None:intergenic 25.0%
!!! CTTAAAAGTTGGTAAGATTT+TGG + chr3_3:66257718-66257737 None:intergenic 25.0%
! GAAGTACATTTCTTAAAAGT+TGG + chr3_3:66257729-66257748 None:intergenic 25.0%
! AATATCCATAACAAGACAAA+AGG + chr3_3:66257800-66257819 None:intergenic 25.0%
! ATGAATATGATTTCATGCAT+TGG - chr3_3:66258022-66258041 Msa0465790:CDS 25.0%
!!! TATGTTGATGCTAGTTTTTT+TGG - chr3_3:66258212-66258231 Msa0465790:CDS 25.0%
! CAGAGAATAATTGGTTTCAA+GGG + chr3_3:66257624-66257643 None:intergenic 30.0%
AAACTCATGCAGAGAATAAT+TGG + chr3_3:66257633-66257652 None:intergenic 30.0%
! CATAAATCTGAGATAACCTT+TGG - chr3_3:66257909-66257928 Msa0465790:CDS 30.0%
AAAAATCAACGCATCATAAC+AGG + chr3_3:66258128-66258147 None:intergenic 30.0%
TACCCATAACAAATCAATTG+TGG - chr3_3:66258331-66258350 Msa0465790:intron 30.0%
ACCCATAACAAATCAATTGT+GGG - chr3_3:66258332-66258351 Msa0465790:intron 30.0%
ATTAACATGAATTTGATCCG+AGG + chr3_3:66258522-66258541 None:intergenic 30.0%
TCGGATCAAATTCATGTTAA+TGG - chr3_3:66258521-66258540 Msa0465790:intron 30.0%
CGGATCAAATTCATGTTAAT+GGG - chr3_3:66258522-66258541 Msa0465790:intron 30.0%
TGAGTAAAATGTGTACAGTT+AGG - chr3_3:66258606-66258625 Msa0465790:intron 30.0%
! CTAGGTATGTATATCGTTTT+AGG + chr3_3:66258747-66258766 None:intergenic 30.0%
! CAGAGAATAATTGGTTTCAA+GGG + chr3_3:66257624-66257643 None:intergenic 30.0%
AAACTCATGCAGAGAATAAT+TGG + chr3_3:66257633-66257652 None:intergenic 30.0%
! CATAAATCTGAGATAACCTT+TGG - chr3_3:66257909-66257928 Msa0465790:CDS 30.0%
AAAAATCAACGCATCATAAC+AGG + chr3_3:66258128-66258147 None:intergenic 30.0%
TACCCATAACAAATCAATTG+TGG - chr3_3:66258331-66258350 Msa0465790:intron 30.0%
ACCCATAACAAATCAATTGT+GGG - chr3_3:66258332-66258351 Msa0465790:intron 30.0%
ATTAACATGAATTTGATCCG+AGG + chr3_3:66258522-66258541 None:intergenic 30.0%
TCGGATCAAATTCATGTTAA+TGG - chr3_3:66258521-66258540 Msa0465790:intron 30.0%
CGGATCAAATTCATGTTAAT+GGG - chr3_3:66258522-66258541 Msa0465790:intron 30.0%
TGAGTAAAATGTGTACAGTT+AGG - chr3_3:66258606-66258625 Msa0465790:intron 30.0%
! CTAGGTATGTATATCGTTTT+AGG + chr3_3:66258747-66258766 None:intergenic 30.0%
! TTCCTTTAAAAGGCATGAAG+TGG + chr3_3:66257600-66257619 None:intergenic 35.0%
TTTCAAGGGCTTCCTTTAAA+AGG + chr3_3:66257610-66257629 None:intergenic 35.0%
! GCAGAGAATAATTGGTTTCA+AGG + chr3_3:66257625-66257644 None:intergenic 35.0%
!! AGAAACAACAAAAGCACTAG+CGG + chr3_3:66257690-66257709 None:intergenic 35.0%
!! CTCAACCTTTTGTCTTGTTA+TGG - chr3_3:66257792-66257811 Msa0465790:CDS 35.0%
TACAGCTCCATAAGAAACTA+TGG - chr3_3:66257935-66257954 Msa0465790:CDS 35.0%
CTTCCTTCCATAGTTTCTTA+TGG + chr3_3:66257945-66257964 None:intergenic 35.0%
ATTGAAGCGCAATATTGAGA+TGG - chr3_3:66257999-66258018 Msa0465790:CDS 35.0%
TCTGTATCGCTATGACTATT+GGG - chr3_3:66258262-66258281 Msa0465790:CDS 35.0%
! CTGCTCTTTTCTGAATTCTT+GGG + chr3_3:66258293-66258312 None:intergenic 35.0%
!! GCCCACAATTGATTTGTTAT+GGG + chr3_3:66258336-66258355 None:intergenic 35.0%
!! TGCCCACAATTGATTTGTTA+TGG + chr3_3:66258337-66258356 None:intergenic 35.0%
TAACAAATCAATTGTGGGCA+AGG - chr3_3:66258337-66258356 Msa0465790:intron 35.0%
AACAAATCAATTGTGGGCAA+GGG - chr3_3:66258338-66258357 Msa0465790:intron 35.0%
! TGTTTTACGCTATCTTCGTA+CGG + chr3_3:66258383-66258402 None:intergenic 35.0%
ACTTCTAGATTGTCAGATGA+AGG - chr3_3:66258551-66258570 Msa0465790:intron 35.0%
TTTGCAGTGTAGAAACACTA+TGG - chr3_3:66258648-66258667 Msa0465790:intron 35.0%
! TTCCTTTAAAAGGCATGAAG+TGG + chr3_3:66257600-66257619 None:intergenic 35.0%
TTTCAAGGGCTTCCTTTAAA+AGG + chr3_3:66257610-66257629 None:intergenic 35.0%
! GCAGAGAATAATTGGTTTCA+AGG + chr3_3:66257625-66257644 None:intergenic 35.0%
!! AGAAACAACAAAAGCACTAG+CGG + chr3_3:66257690-66257709 None:intergenic 35.0%
!! CTCAACCTTTTGTCTTGTTA+TGG - chr3_3:66257792-66257811 Msa0465790:CDS 35.0%
TACAGCTCCATAAGAAACTA+TGG - chr3_3:66257935-66257954 Msa0465790:CDS 35.0%
CTTCCTTCCATAGTTTCTTA+TGG + chr3_3:66257945-66257964 None:intergenic 35.0%
ATTGAAGCGCAATATTGAGA+TGG - chr3_3:66257999-66258018 Msa0465790:CDS 35.0%
TCTGTATCGCTATGACTATT+GGG - chr3_3:66258262-66258281 Msa0465790:CDS 35.0%
! CTGCTCTTTTCTGAATTCTT+GGG + chr3_3:66258293-66258312 None:intergenic 35.0%
!! GCCCACAATTGATTTGTTAT+GGG + chr3_3:66258336-66258355 None:intergenic 35.0%
!! TGCCCACAATTGATTTGTTA+TGG + chr3_3:66258337-66258356 None:intergenic 35.0%
TAACAAATCAATTGTGGGCA+AGG - chr3_3:66258337-66258356 Msa0465790:intron 35.0%
AACAAATCAATTGTGGGCAA+GGG - chr3_3:66258338-66258357 Msa0465790:intron 35.0%
! TGTTTTACGCTATCTTCGTA+CGG + chr3_3:66258383-66258402 None:intergenic 35.0%
ACTTCTAGATTGTCAGATGA+AGG - chr3_3:66258551-66258570 Msa0465790:intron 35.0%
TTTGCAGTGTAGAAACACTA+TGG - chr3_3:66258648-66258667 Msa0465790:intron 35.0%
TGTTAAAGAGCTGGACTTAG+AGG - chr3_3:66257477-66257496 Msa0465790:three_prime_UTR 40.0%
!! ATATTACACCACTGGCTCTA+GGG - chr3_3:66257573-66257592 Msa0465790:three_prime_UTR 40.0%
! GACCACTTCATGCCTTTTAA+AGG - chr3_3:66257595-66257614 Msa0465790:three_prime_UTR 40.0%
AGTCTTAACAGCAGATTGAC+TGG + chr3_3:66257850-66257869 None:intergenic 40.0%
TTATGGAGCTGTATCACCAA+AGG + chr3_3:66257928-66257947 None:intergenic 40.0%
GCTCCATAAGAAACTATGGA+AGG - chr3_3:66257939-66257958 Msa0465790:CDS 40.0%
GAAACTATGGAAGGAAGCAA+AGG - chr3_3:66257948-66257967 Msa0465790:CDS 40.0%
ACGCATCATAACAGGAAATG+AGG + chr3_3:66258120-66258139 None:intergenic 40.0%
! GAGTTTTACGACTGCGAAAA+GGG + chr3_3:66258163-66258182 None:intergenic 40.0%
! AGAGTTTTACGACTGCGAAA+AGG + chr3_3:66258164-66258183 None:intergenic 40.0%
TTTCGCAGTCGTAAAACTCT+TGG - chr3_3:66258164-66258183 Msa0465790:CDS 40.0%
TAAAACTCTTGGTCTGCCAT+TGG - chr3_3:66258175-66258194 Msa0465790:CDS 40.0%
CAATAGTCATAGCGATACAG+AGG + chr3_3:66258263-66258282 None:intergenic 40.0%
CTCTGTATCGCTATGACTAT+TGG - chr3_3:66258261-66258280 Msa0465790:CDS 40.0%
CTGTATCGCTATGACTATTG+GGG - chr3_3:66258263-66258282 Msa0465790:CDS 40.0%
TGTATCGCTATGACTATTGG+GGG - chr3_3:66258264-66258283 Msa0465790:CDS 40.0%
! CCTGCTCTTTTCTGAATTCT+TGG + chr3_3:66258294-66258313 None:intergenic 40.0%
CCAAGAATTCAGAAAAGAGC+AGG - chr3_3:66258291-66258310 Msa0465790:intron 40.0%
GTTGACGAGTATTCAAAGCA+AGG - chr3_3:66258416-66258435 Msa0465790:intron 40.0%
TGTTAAAGAGCTGGACTTAG+AGG - chr3_3:66257477-66257496 Msa0465790:three_prime_UTR 40.0%
!! ATATTACACCACTGGCTCTA+GGG - chr3_3:66257573-66257592 Msa0465790:three_prime_UTR 40.0%
! GACCACTTCATGCCTTTTAA+AGG - chr3_3:66257595-66257614 Msa0465790:three_prime_UTR 40.0%
AGTCTTAACAGCAGATTGAC+TGG + chr3_3:66257850-66257869 None:intergenic 40.0%
TTATGGAGCTGTATCACCAA+AGG + chr3_3:66257928-66257947 None:intergenic 40.0%
GCTCCATAAGAAACTATGGA+AGG - chr3_3:66257939-66257958 Msa0465790:CDS 40.0%
GAAACTATGGAAGGAAGCAA+AGG - chr3_3:66257948-66257967 Msa0465790:CDS 40.0%
ACGCATCATAACAGGAAATG+AGG + chr3_3:66258120-66258139 None:intergenic 40.0%
! GAGTTTTACGACTGCGAAAA+GGG + chr3_3:66258163-66258182 None:intergenic 40.0%
! AGAGTTTTACGACTGCGAAA+AGG + chr3_3:66258164-66258183 None:intergenic 40.0%
TTTCGCAGTCGTAAAACTCT+TGG - chr3_3:66258164-66258183 Msa0465790:CDS 40.0%
TAAAACTCTTGGTCTGCCAT+TGG - chr3_3:66258175-66258194 Msa0465790:CDS 40.0%
CAATAGTCATAGCGATACAG+AGG + chr3_3:66258263-66258282 None:intergenic 40.0%
CTCTGTATCGCTATGACTAT+TGG - chr3_3:66258261-66258280 Msa0465790:CDS 40.0%
CTGTATCGCTATGACTATTG+GGG - chr3_3:66258263-66258282 Msa0465790:CDS 40.0%
TGTATCGCTATGACTATTGG+GGG - chr3_3:66258264-66258283 Msa0465790:CDS 40.0%
! CCTGCTCTTTTCTGAATTCT+TGG + chr3_3:66258294-66258313 None:intergenic 40.0%
CCAAGAATTCAGAAAAGAGC+AGG - chr3_3:66258291-66258310 Msa0465790:intron 40.0%
GTTGACGAGTATTCAAAGCA+AGG - chr3_3:66258416-66258435 Msa0465790:intron 40.0%
GGCAATGCATATTACACCAC+TGG - chr3_3:66257565-66257584 Msa0465790:three_prime_UTR 45.0%
!! CATATTACACCACTGGCTCT+AGG - chr3_3:66257572-66257591 Msa0465790:three_prime_UTR 45.0%
! AACAGCAGATTGACTGGTCA+AGG + chr3_3:66257844-66257863 None:intergenic 45.0%
TGGAAGGAAGCAAAGGATAG+AGG - chr3_3:66257955-66257974 Msa0465790:CDS 45.0%
CATTGATCAGAGACATCAGC+TGG - chr3_3:66258070-66258089 Msa0465790:intron 45.0%
CTAGCATCAACATACCTTCC+TGG + chr3_3:66258206-66258225 None:intergenic 45.0%
GAGGACTTTCAGGATCATAC+TGG + chr3_3:66258244-66258263 None:intergenic 45.0%
TAGCGATACAGAGGACTTTC+AGG + chr3_3:66258254-66258273 None:intergenic 45.0%
GTATCGCTATGACTATTGGG+GGG - chr3_3:66258265-66258284 Msa0465790:CDS 45.0%
CAGAAAAGAGCAGGAAAGAG+AGG - chr3_3:66258300-66258319 Msa0465790:intron 45.0%
GTCATCGTCCTCTTCTTCTT+CGG + chr3_3:66258450-66258469 None:intergenic 45.0%
TTCAGCATTCTGAGCAGTCT+TGG - chr3_3:66258488-66258507 Msa0465790:intron 45.0%
CAGTCTTGGTACTAATGCCT+CGG - chr3_3:66258502-66258521 Msa0465790:intron 45.0%
! GTCAGATGAAGGTGTGTTTG+AGG - chr3_3:66258562-66258581 Msa0465790:intron 45.0%
GGCAATGCATATTACACCAC+TGG - chr3_3:66257565-66257584 Msa0465790:three_prime_UTR 45.0%
!! CATATTACACCACTGGCTCT+AGG - chr3_3:66257572-66257591 Msa0465790:three_prime_UTR 45.0%
! AACAGCAGATTGACTGGTCA+AGG + chr3_3:66257844-66257863 None:intergenic 45.0%
TGGAAGGAAGCAAAGGATAG+AGG - chr3_3:66257955-66257974 Msa0465790:CDS 45.0%
CATTGATCAGAGACATCAGC+TGG - chr3_3:66258070-66258089 Msa0465790:intron 45.0%
CTAGCATCAACATACCTTCC+TGG + chr3_3:66258206-66258225 None:intergenic 45.0%
GAGGACTTTCAGGATCATAC+TGG + chr3_3:66258244-66258263 None:intergenic 45.0%
TAGCGATACAGAGGACTTTC+AGG + chr3_3:66258254-66258273 None:intergenic 45.0%
GTATCGCTATGACTATTGGG+GGG - chr3_3:66258265-66258284 Msa0465790:CDS 45.0%
CAGAAAAGAGCAGGAAAGAG+AGG - chr3_3:66258300-66258319 Msa0465790:intron 45.0%
GTCATCGTCCTCTTCTTCTT+CGG + chr3_3:66258450-66258469 None:intergenic 45.0%
TTCAGCATTCTGAGCAGTCT+TGG - chr3_3:66258488-66258507 Msa0465790:intron 45.0%
CAGTCTTGGTACTAATGCCT+CGG - chr3_3:66258502-66258521 Msa0465790:intron 45.0%
! GTCAGATGAAGGTGTGTTTG+AGG - chr3_3:66258562-66258581 Msa0465790:intron 45.0%
!!! TATTTTTATCAAAATATAAA+AGG + chr3_3:66257532-66257551 None:intergenic 5.0%
!!! TATTTTTATCAAAATATAAA+AGG + chr3_3:66257532-66257551 None:intergenic 5.0%
GGAAGCAAAGGATAGAGGTG+AGG - chr3_3:66257960-66257979 Msa0465790:CDS 50.0%
! TACCTTCCTGGCTCTTCCAA+TGG + chr3_3:66258194-66258213 None:intergenic 50.0%
!! TTGTGGGCAAGGGTACTGTT+TGG - chr3_3:66258348-66258367 Msa0465790:intron 50.0%
TGAAGCTGCCGAAGAAGAAG+AGG - chr3_3:66258439-66258458 Msa0465790:intron 50.0%
GGAAGCAAAGGATAGAGGTG+AGG - chr3_3:66257960-66257979 Msa0465790:CDS 50.0%
! TACCTTCCTGGCTCTTCCAA+TGG + chr3_3:66258194-66258213 None:intergenic 50.0%
!! TTGTGGGCAAGGGTACTGTT+TGG - chr3_3:66258348-66258367 Msa0465790:intron 50.0%
TGAAGCTGCCGAAGAAGAAG+AGG - chr3_3:66258439-66258458 Msa0465790:intron 50.0%
TGCCATTGGAAGAGCCAGGA+AGG - chr3_3:66258189-66258208 Msa0465790:CDS 55.0%
TGCCATTGGAAGAGCCAGGA+AGG - chr3_3:66258189-66258208 Msa0465790:CDS 55.0%
GAAGTGGTCCCTAGAGCCAG+TGG + chr3_3:66257584-66257603 None:intergenic 60.0%
GGTCTGCCATTGGAAGAGCC+AGG - chr3_3:66258185-66258204 Msa0465790:CDS 60.0%
GAAGTGGTCCCTAGAGCCAG+TGG + chr3_3:66257584-66257603 None:intergenic 60.0%
GGTCTGCCATTGGAAGAGCC+AGG - chr3_3:66258185-66258204 Msa0465790:CDS 60.0%
! GGCTGCACTTGCTGAGCGTG+AGG - chr3_3:66257498-66257517 Msa0465790:three_prime_UTR 65.0%
! GGCTGCACTTGCTGAGCGTG+AGG - chr3_3:66257498-66257517 Msa0465790:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 66257469 66258770 66257469 ID=Msa0465790;Name=Msa0465790
chr3_3 mRNA 66257469 66258770 66257469 ID=Msa0465790-mRNA-1;Parent=Msa0465790;Name=Msa0465790-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0.66|1|1|1|3|181|206
chr3_3 exon 66257469 66258067 66257469 ID=Msa0465790-mRNA-1:exon:14974;Parent=Msa0465790-mRNA-1
chr3_3 exon 66258148 66258299 66258148 ID=Msa0465790-mRNA-1:exon:14973;Parent=Msa0465790-mRNA-1
chr3_3 exon 66258720 66258770 66258720 ID=Msa0465790-mRNA-1:exon:14972;Parent=Msa0465790-mRNA-1
chr3_3 CDS 66258720 66258770 66258720 ID=Msa0465790-mRNA-1:cds;Parent=Msa0465790-mRNA-1
chr3_3 CDS 66258148 66258299 66258148 ID=Msa0465790-mRNA-1:cds;Parent=Msa0465790-mRNA-1
chr3_3 CDS 66257650 66258067 66257650 ID=Msa0465790-mRNA-1:cds;Parent=Msa0465790-mRNA-1
chr3_3 three_prime_UTR 66257469 66257649 66257469 ID=Msa0465790-mRNA-1:three_prime_utr;Parent=Msa0465790-mRNA-1
Gene Sequence

>Msa0465790

AAAACAAGTGTTAAAGAGCTGGACTTAGAGGCTGCACTTGCTGAGCGTGAGCTCCATAAGAAACTATGGAAGGAAGCAAAGGATAGAGGTGAGGACTACAAAATCACTACATTGAAGCGCAATATTGAGATGGATGAATATGATTTCATGCATTGGCGTAGATCATTTGAAGAAAGAGAAGCATTGATCAGAGACATCAGCTGTCGTAAAACTCTTGGTCTGCCATTGGAAGAGCCAGGAAGGTATGTTGATGCTAGTTTTTTTGGTAAAGACCAGTATGATCCTGAAAGTCCTCTGTATCGCTATGACTATTGGGGGGAACCCAAGAATTCAGAAAAGAGCAGGAAAGAGAGGATGACAGATACCCATAACAAATCAATTGTGGGCAAGGGTACTGTTTGGTGTGAAATGCCGTACGAAGATAGCGTAAAACATCAGTCAAAAGAAGTTGACGAGTATTCAAAGCAAGGTGAAGCTGCCGAAGAAGAAGAGGACGATGACGATGATGATGACTTTGACTTCAGCATTCTGAGCAGTCTTGGTACTAATGCCTCGGATCAAATTCATGTTAATGGGACTGAGACTTCTAGATTGTCAGATGAAGGTGTGTTTGAGGACTGA

Protein sequence

>Msa0465790

KTSVKELDLEAALAERELHKKLWKEAKDRGEDYKITTLKRNIEMDEYDFMHWRRSFEEREALIRDISCRKTLGLPLEEPGRYVDASFFGKDQYDPESPLYRYDYWGEPKNSEKSRKERMTDTHNKSIVGKGTVWCEMPYEDSVKHQSKEVDEYSKQGEAAEEEEDDDDDDDFDFSILSSLGTNASDQIHVNGTETSRLSDEGVFED*