AlfalfaGEDB | Msa0465790

M. sativa cultivar zhongmu-4 / Msa0465790

KEGG: -
GO: GO:0000229 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005829 GO:0009295 GO:0009507 GO:0009508 GO:0009532 GO:0009536 GO:0009570 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0465790	ACJ85722.1	98.068	207	3	1	1	206	201	407	4.28e-141	410

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0465790	sp\|F4JF21\|PTA10_ARATH	75.172	145	36	0	1	145	463	607	2.27e-69	226

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0465790	B7FLT9	98.068	207	3	1	1	206	201	407	2.04e-141	410

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004860	Msa0465790	0.803564	3.281906e-49	-8.615850e-47
Msa0004920	Msa0465790	0.807262	5.507386e-50	-8.615850e-47
Msa0004980	Msa0465790	0.806818	6.837326e-50	-8.615850e-47
Msa0011960	Msa0465790	0.809830	1.558709e-50	-8.615850e-47
Msa0012040	Msa0465790	0.816243	6.113400e-52	-8.615850e-47
Msa0012240	Msa0465790	0.820805	5.648113e-53	-8.615850e-47
Msa0013050	Msa0465790	-0.878121	3.629383e-69	-8.615850e-47
Msa0025730	Msa0465790	0.810886	9.222676e-51	-8.615850e-47
Msa0027540	Msa0465790	0.845140	4.888318e-59	-8.615850e-47
Msa0030380	Msa0465790	0.865184	7.097799e-65	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0465790	MtrunA17_Chr3g0116321	98.551	207	2	1	1	206	462	668	1.25e-142	412

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0465790	AT3G48500.1	75.172	145	36	0	1	145	463	607	2.30e-70	226
Msa0465790	AT3G48500.2	75.172	145	36	0	1	145	492	636	4.02e-70	226

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Find 49 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCATATTATCTGTCT+CGG	0.477319	3_3:-66257520	Msa0465790:three_prime_UTR
AACAAATCAATTGTGGGCAA+GGG	0.585346	3_3:-66257879	Msa0465790:CDS
ACCCATAACAAATCAATTGT+GGG	0.524675	3_3:-66257885	Msa0465790:CDS
ACTTCTAGATTGTCAGATGA+AGG	0.543319	3_3:-66257666	Msa0465790:CDS
ATGAATATGATTTCATGCAT+TGG	0.539326	3_3:-66258195	Msa0465790:CDS
ATTAACATGAATTTGATCCG+AGG	0.664175	3_3:+66257698	None:intergenic
ATTGAAGCGCAATATTGAGA+TGG	0.601634	3_3:-66258218	Msa0465790:CDS
ATTGACACCAACGATAGGCT+AGG	0.620208	3_3:+66257455	None:intergenic
CAATAGTCATAGCGATACAG+AGG	0.690983	3_3:+66257957	None:intergenic
CAGAAAAGAGCAGGAAAGAG+AGG	0.542840	3_3:-66257917	Msa0465790:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTCATGCAGAGAATAAT+TGG	+	chr3_3:66257633-66257652	None:intergenic	30.0%
AAAAATCAACGCATCATAAC+AGG	+	chr3_3:66258128-66258147	None:intergenic	30.0%
TACCCATAACAAATCAATTG+TGG	-	chr3_3:66258331-66258350	Msa0465790:intron	30.0%
ACCCATAACAAATCAATTGT+GGG	-	chr3_3:66258332-66258351	Msa0465790:intron	30.0%
ATTAACATGAATTTGATCCG+AGG	+	chr3_3:66258522-66258541	None:intergenic	30.0%
TCGGATCAAATTCATGTTAA+TGG	-	chr3_3:66258521-66258540	Msa0465790:intron	30.0%
CGGATCAAATTCATGTTAAT+GGG	-	chr3_3:66258522-66258541	Msa0465790:intron	30.0%
TGAGTAAAATGTGTACAGTT+AGG	-	chr3_3:66258606-66258625	Msa0465790:intron	30.0%
AAACTCATGCAGAGAATAAT+TGG	+	chr3_3:66257633-66257652	None:intergenic	30.0%
AAAAATCAACGCATCATAAC+AGG	+	chr3_3:66258128-66258147	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	66257469	66258770	66257469	ID=Msa0465790;Name=Msa0465790
chr3_3	mRNA	66257469	66258770	66257469	ID=Msa0465790-mRNA-1;Parent=Msa0465790;Name=Msa0465790-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|1\|0.66\|1\|1\|1\|3\|181\|206
chr3_3	exon	66257469	66258067	66257469	ID=Msa0465790-mRNA-1:exon:14974;Parent=Msa0465790-mRNA-1
chr3_3	exon	66258148	66258299	66258148	ID=Msa0465790-mRNA-1:exon:14973;Parent=Msa0465790-mRNA-1
chr3_3	exon	66258720	66258770	66258720	ID=Msa0465790-mRNA-1:exon:14972;Parent=Msa0465790-mRNA-1
chr3_3	CDS	66258720	66258770	66258720	ID=Msa0465790-mRNA-1:cds;Parent=Msa0465790-mRNA-1
chr3_3	CDS	66258148	66258299	66258148	ID=Msa0465790-mRNA-1:cds;Parent=Msa0465790-mRNA-1
chr3_3	CDS	66257650	66258067	66257650	ID=Msa0465790-mRNA-1:cds;Parent=Msa0465790-mRNA-1
chr3_3	three_prime_UTR	66257469	66257649	66257469	ID=Msa0465790-mRNA-1:three_prime_utr;Parent=Msa0465790-mRNA-1

Gene Sequence

>Msa0465790

AAAACAAGTGTTAAAGAGCTGGACTTAGAGGCTGCACTTGCTGAGCGTGAGCTCCATAAGAAACTATGGAAGGAAGCAAAGGATAGAGGTGAGGACTACAAAATCACTACATTGAAGCGCAATATTGAGATGGATGAATATGATTTCATGCATTGGCGTAGATCATTTGAAGAAAGAGAAGCATTGATCAGAGACATCAGCTGTCGTAAAACTCTTGGTCTGCCATTGGAAGAGCCAGGAAGGTATGTTGATGCTAGTTTTTTTGGTAAAGACCAGTATGATCCTGAAAGTCCTCTGTATCGCTATGACTATTGGGGGGAACCCAAGAATTCAGAAAAGAGCAGGAAAGAGAGGATGACAGATACCCATAACAAATCAATTGTGGGCAAGGGTACTGTTTGGTGTGAAATGCCGTACGAAGATAGCGTAAAACATCAGTCAAAAGAAGTTGACGAGTATTCAAAGCAAGGTGAAGCTGCCGAAGAAGAAGAGGACGATGACGATGATGATGACTTTGACTTCAGCATTCTGAGCAGTCTTGGTACTAATGCCTCGGATCAAATTCATGTTAATGGGACTGAGACTTCTAGATTGTCAGATGAAGGTGTGTTTGAGGACTGA

Protein sequence

>Msa0465790

KTSVKELDLEAALAERELHKKLWKEAKDRGEDYKITTLKRNIEMDEYDFMHWRRSFEEREALIRDISCRKTLGLPLEEPGRYVDASFFGKDQYDPESPLYRYDYWGEPKNSEKSRKERMTDTHNKSIVGKGTVWCEMPYEDSVKHQSKEVDEYSKQGEAAEEEEDDDDDDDFDFSILSSLGTNASDQIHVNGTETSRLSDEGVFED*