Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0638680 | XP_013457178.1 | 62.121 | 132 | 31 | 4 | 115 | 237 | 1 | 122 | 1.60e-13 | 75.9 |
| Msa0638680 | XP_013457178.1 | 84.615 | 130 | 12 | 1 | 1 | 130 | 1 | 122 | 8.52e-40 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0638680 | A0A072UN30 | 62.121 | 132 | 31 | 4 | 115 | 237 | 1 | 122 | 7.64e-14 | 75.9 |
| Msa0638680 | A0A072UN30 | 84.615 | 130 | 12 | 1 | 1 | 130 | 1 | 122 | 4.07e-40 | 144 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0614200 | Msa0638680 | 0.906631 | 1.207262e-80 | -8.615850e-47 |
| Msa0638650 | Msa0638680 | 0.842455 | 2.559861e-58 | -8.615850e-47 |
| Msa0638680 | Msa0697350 | 0.827195 | 1.788972e-54 | -8.615850e-47 |
| Msa0638680 | Msa1221300 | 0.801201 | 1.007000e-48 | -8.615850e-47 |
| Msa0638680 | Msa1337450 | 0.802253 | 6.124670e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0638680 | MtrunA17_Chr4g0050141 | 84.615 | 130 | 12 | 1 | 1 | 130 | 1 | 122 | 7.83e-44 | 144 |
| Msa0638680 | MtrunA17_Chr4g0050141 | 62.121 | 132 | 31 | 4 | 115 | 237 | 1 | 122 | 1.47e-17 | 75.9 |
| Msa0638680 | MtrunA17_Chr4g0050091 | 75.862 | 116 | 15 | 4 | 1 | 114 | 1 | 105 | 2.47e-28 | 103 |
| Msa0638680 | MtrunA17_Chr4g0050091 | 66.667 | 111 | 27 | 4 | 115 | 221 | 1 | 105 | 5.50e-22 | 87.8 |
| Msa0638680 | MtrunA17_Chr4g0050131 | 79.630 | 108 | 21 | 1 | 115 | 221 | 1 | 108 | 1.68e-21 | 86.3 |
| Msa0638680 | MtrunA17_Chr4g0050131 | 79.310 | 116 | 14 | 3 | 1 | 114 | 1 | 108 | 2.01e-16 | 73.2 |
| Msa0638680 | MtrunA17_Chr4g0050101 | 67.290 | 107 | 23 | 4 | 1 | 102 | 1 | 100 | 9.76e-21 | 86.7 |
| Msa0638680 | MtrunA17_Chr4g0050101 | 53.465 | 101 | 41 | 3 | 115 | 211 | 1 | 99 | 1.26e-12 | 64.7 |
| Msa0638680 | MtrunA17_Chr4g0050061 | 73.729 | 118 | 25 | 3 | 121 | 237 | 7 | 119 | 5.72e-17 | 74.3 |
| Msa0638680 | MtrunA17_Chr4g0050061 | 71.212 | 132 | 23 | 3 | 1 | 130 | 1 | 119 | 1.58e-16 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 95 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAACAGATTCACCTTTGC+TGG | 0.277357 | 4_3:-34202383 | Msa0638680:CDS |
| TTGAACAGATTCACCTTTGC+CGG | 0.313088 | 4_3:-34198254 | Msa0638680:CDS |
| AGGAGATGGTGGAGAGTTGA+TGG | 0.321290 | 4_3:+34198376 | None:intergenic |
| AGGAGATGGTGGAGAGTTGA+TGG | 0.321290 | 4_3:+34202514 | None:intergenic |
| AGGTGTTGCAACAGGGGATA+TGG | 0.362150 | 4_3:+34198478 | None:intergenic |
| GTGATCGCAGGTGTTGCAAC+AGG | 0.378772 | 4_3:+34198470 | None:intergenic |
| AACCACAACAGCAGCAGATC+CGG | 0.381665 | 4_3:+34198235 | None:intergenic |
| TGGAGTGGCAACCGGTGATA+TGG | 0.388096 | 4_3:+34202631 | None:intergenic |
| CACAGTTGTGTTGATGTTTG+TGG | 0.412350 | 4_3:-34202705 | Msa0638680:CDS |
| GATGTTTGTGGCTACACTAT+TGG | 0.415229 | 4_3:-34202693 | Msa0638680:CDS |
| GGAGGAGTGGAGATCGATGA+TGG | 0.427396 | 4_3:+34198308 | None:intergenic |
| AGATGGTGCCTGAGAGGACT+TGG | 0.427679 | 4_3:+34202607 | None:intergenic |
| GCGGGAGAGTCGGAGGAAGC+AGG | 0.432793 | 4_3:+34198350 | None:intergenic |
| ATCTCCTTCCGCTGTCTCAC+CGG | 0.436937 | 4_3:-34202588 | Msa0638680:CDS |
| GGAGTAGTAGAGATGGATGA+TGG | 0.440924 | 4_3:+34202446 | None:intergenic |
| GAAGCAGGAGGAGGAGATGG+TGG | 0.444045 | 4_3:+34202503 | None:intergenic |
| GACTTGGGTGGAGTGGCAAC+CGG | 0.450462 | 4_3:+34202623 | None:intergenic |
| GGAGCGTTCTTCACAGGTAC+TGG | 0.455392 | 4_3:+34202554 | None:intergenic |
| CACTCCACCCAAGTCCTCTC+AGG | 0.464764 | 4_3:-34202615 | Msa0638680:CDS |
| CACTCCCTCCGCTGACGCAC+CGG | 0.469292 | 4_3:-34198450 | Msa0638680:CDS |
| GGAGAGGGAGCGCTCTTCAC+AGG | 0.474938 | 4_3:+34198410 | None:intergenic |
| TGCCGGATCTGCTGCTGTTG+TGG | 0.475100 | 4_3:-34198237 | Msa0638680:CDS |
| GAAGCAGGAGAAGGAGATGG+TGG | 0.477690 | 4_3:+34198365 | None:intergenic |
| GTTCAAAGCGGCGCCGTTTG+CGG | 0.484242 | 4_3:+34198271 | None:intergenic |
| TTGAGAAGGAGTAGTAGAGA+TGG | 0.490041 | 4_3:+34202439 | None:intergenic |
| TGAAGATGGAGATTGAGCGA+AGG | 0.494303 | 4_3:+34198508 | None:intergenic |
| AGGAGAGACAGCGGGAGAGT+CGG | 0.494556 | 4_3:+34198340 | None:intergenic |
| GATGGCAGATGGTGAAGGAG+AGG | 0.497114 | 4_3:+34198394 | None:intergenic |
| GGAGCGCTCTTCACAGGTAC+GGG | 0.499222 | 4_3:+34198416 | None:intergenic |
| TGCTGGATCTGCTGCCGTTG+TGG | 0.503471 | 4_3:-34202366 | Msa0638680:CDS |
| GCGGGAGAGTCGGATGAAGC+AGG | 0.506808 | 4_3:+34202488 | None:intergenic |
| AGGAGAGACAGCGGGAGAGT+CGG | 0.511796 | 4_3:+34202478 | None:intergenic |
| TCTGAAGGTCCTTCCGCAAA+CGG | 0.511949 | 4_3:-34198284 | Msa0638680:CDS |
| AGAGACAGCGGGAGAGTCGG+AGG | 0.517005 | 4_3:+34198343 | None:intergenic |
| ATCTCCACTCCTCCTTCTGA+AGG | 0.524319 | 4_3:-34198299 | Msa0638680:CDS |
| TCAGCGGAGGGAGTGATCGC+AGG | 0.525650 | 4_3:+34198458 | None:intergenic |
| ATCGATGATGGAGTAACGGC+AGG | 0.528907 | 4_3:+34198320 | None:intergenic |
| ATGGATGATGGAGTAACAGC+AGG | 0.530730 | 4_3:+34202458 | None:intergenic |
| GAGTCGGATGAAGCAGGAGG+AGG | 0.537705 | 4_3:+34202494 | None:intergenic |
| GATGAAGCAGGAGGAGGAGA+TGG | 0.538341 | 4_3:+34202500 | None:intergenic |
| TCCCTCCGCTGACGCACCGG+TGG | 0.539268 | 4_3:-34198447 | Msa0638680:CDS |
| GAGTCGGAGGAAGCAGGAGA+AGG | 0.544934 | 4_3:+34198356 | None:intergenic |
| GGGAGCGCTCTTCACAGGTA+CGG | 0.546719 | 4_3:+34198415 | None:intergenic |
| AAAGCGGCGCCGTTTGCGGA+AGG | 0.548917 | 4_3:+34198275 | None:intergenic |
| TGCCACCGGTGCGTCAGCGG+AGG | 0.548965 | 4_3:+34198445 | None:intergenic |
| AGTAACAGCAGGAGAGACAG+CGG | 0.550973 | 4_3:+34202469 | None:intergenic |
| AGTAACGGCAGGAGAGACAG+CGG | 0.553356 | 4_3:+34198331 | None:intergenic |
| AGATGCCACCGGTGCGTCAG+CGG | 0.556554 | 4_3:+34198442 | None:intergenic |
| GAAGGAGAAGGTGCTTGAGA+AGG | 0.556810 | 4_3:+34202425 | None:intergenic |
| ATGGCAGATGGTGAAGGAGA+TGG | 0.559733 | 4_3:+34202533 | None:intergenic |
| GGTGAGACAGCGGAAGGAGA+TGG | 0.565932 | 4_3:+34202590 | None:intergenic |
| AGGACCTTCAGAAGGAGGAG+TGG | 0.568330 | 4_3:+34198295 | None:intergenic |
| GCCACCGGTGCGTCAGCGGA+GGG | 0.574641 | 4_3:+34198446 | None:intergenic |
| ATCATCTCCAACCATATCAC+CGG | 0.577596 | 4_3:-34202642 | Msa0638680:CDS |
| TCCTTCCGCTGTCTCACCGG+TGG | 0.578332 | 4_3:-34202585 | Msa0638680:CDS |
| GAATCTGTTCAAAGCGGCGG+CGG | 0.582032 | 4_3:+34202394 | None:intergenic |
| GTAACGGCAGGAGAGACAGC+GGG | 0.589547 | 4_3:+34198332 | None:intergenic |
| GTAACAGCAGGAGAGACAGC+GGG | 0.589547 | 4_3:+34202470 | None:intergenic |
| ATGGCAGATGGTGAAGGAGA+GGG | 0.589863 | 4_3:+34198395 | None:intergenic |
| CTGAGAGGACTTGGGTGGAG+TGG | 0.594704 | 4_3:+34202616 | None:intergenic |
| GCGGAAGGACCTTCAGAAGG+AGG | 0.598477 | 4_3:+34198290 | None:intergenic |
| GAGGAAGCAGGAGAAGGAGA+TGG | 0.598923 | 4_3:+34198362 | None:intergenic |
| GATATGGTAGGAGATGAAGA+TGG | 0.601445 | 4_3:+34198494 | None:intergenic |
| GATGGTGCCTGAGAGGACTT+GGG | 0.602114 | 4_3:+34202608 | None:intergenic |
| GGAGATCGATGATGGAGTAA+CGG | 0.602999 | 4_3:+34198316 | None:intergenic |
| GCCACCGGTGAGACAGCGGA+AGG | 0.606446 | 4_3:+34202584 | None:intergenic |
| GAGTTGATGGCAGATGGTGA+AGG | 0.608419 | 4_3:+34198389 | None:intergenic |
| GAGTTGATGGCAGATGGTGA+AGG | 0.608419 | 4_3:+34202527 | None:intergenic |
| GGTGGAGAGTTGATGGCAGA+TGG | 0.609584 | 4_3:+34198383 | None:intergenic |
| GGTGGAGAGTTGATGGCAGA+TGG | 0.609584 | 4_3:+34202521 | None:intergenic |
| TTTGCGGAAGGACCTTCAGA+AGG | 0.615822 | 4_3:+34198287 | None:intergenic |
| GCGCTCTTCACAGGTACGGG+TGG | 0.617846 | 4_3:+34198419 | None:intergenic |
| AGATGCCACCGGTGAGACAG+CGG | 0.622483 | 4_3:+34202580 | None:intergenic |
| TGAAGGAGATTGAGCAATGG+TGG | 0.623656 | 4_3:+34202664 | None:intergenic |
| TGATCGCAGGTGTTGCAACA+GGG | 0.625086 | 4_3:+34198471 | None:intergenic |
| AACAGCAGCAGATCCGGCAA+AGG | 0.628293 | 4_3:+34198241 | None:intergenic |
| GGAAGGAGATGGTGCCTGAG+AGG | 0.629137 | 4_3:+34202601 | None:intergenic |
| GTTGCAACAGGGGATATGGT+AGG | 0.629950 | 4_3:+34198482 | None:intergenic |
| GATCGCAGGTGTTGCAACAG+GGG | 0.630287 | 4_3:+34198472 | None:intergenic |
| GTGGCAACCGGTGATATGGT+TGG | 0.632011 | 4_3:+34202635 | None:intergenic |
| GGTACGGGTGGAGATGCCAC+CGG | 0.637472 | 4_3:+34198431 | None:intergenic |
| GCGGCGGCGGAGTTATCAGA+AGG | 0.638923 | 4_3:+34202407 | None:intergenic |
| GGAGAGTCGGATGAAGCAGG+AGG | 0.644433 | 4_3:+34202491 | None:intergenic |
| GCGGAGTTATCAGAAGGAGA+AGG | 0.651532 | 4_3:+34202413 | None:intergenic |
| GGTACTGGAGGAGATGCCAC+CGG | 0.659674 | 4_3:+34202569 | None:intergenic |
| AACGGCAGCAGATCCAGCAA+AGG | 0.662930 | 4_3:+34202370 | None:intergenic |
| GCGTTCTTCACAGGTACTGG+AGG | 0.664174 | 4_3:+34202557 | None:intergenic |
| GATATGGTTGGAGATGATGA+AGG | 0.665449 | 4_3:+34202647 | None:intergenic |
| GGTGAATCTGTTCAAAGCGG+CGG | 0.668579 | 4_3:+34202391 | None:intergenic |
| AGCAGCAGCGAAAACCACAA+CGG | 0.677280 | 4_3:+34202352 | None:intergenic |
| AACTCTCTACAGCATCAAAG+CGG | 0.677293 | 4_3:+34198205 | None:intergenic |
| TGATGAAGGAGATTGAGCAA+TGG | 0.691682 | 4_3:+34202661 | None:intergenic |
| AAAGGTGAATCTGTTCAAAG+CGG | 0.702492 | 4_3:+34198259 | None:intergenic |
| AAAGGTGAATCTGTTCAAAG+CGG | 0.711618 | 4_3:+34202388 | None:intergenic |
| GGTGCCTGAGAGGACTTGGG+TGG | 0.711883 | 4_3:+34202611 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTAGTACTATTTAAA+GGG | - | chr4_3:34198875-34198894 | Msa0638680:intron | 10.0% |
| !!! | AAAAATATGAATTTTACATA+GGG | + | chr4_3:34200618-34200637 | None:intergenic | 10.0% |
| !!! | AAAAAATATGAATTTTACAT+AGG | + | chr4_3:34200619-34200638 | None:intergenic | 10.0% |
| !! | ATCAAATGAAATAAAAAAAT+AGG | + | chr4_3:34201356-34201375 | None:intergenic | 10.0% |
| !! | AAAATCAATTGAAAAAAAAT+AGG | + | chr4_3:34201382-34201401 | None:intergenic | 10.0% |
| !!! | ATTTCTTTTAACAAAATTTA+AGG | + | chr4_3:34201834-34201853 | None:intergenic | 10.0% |
| !!! | TTAATATTTTTACATAAACT+CGG | + | chr4_3:34201944-34201963 | None:intergenic | 10.0% |
| !!! | TTTTATTTTAGATTAATATC+AGG | + | chr4_3:34202129-34202148 | None:intergenic | 10.0% |
| !! | GTAAAATTAGTACTATTTAA+AGG | - | chr4_3:34198874-34198893 | Msa0638680:intron | 15.0% |
| !!! | AAAATAGAAGAAAATTTTAG+AGG | + | chr4_3:34200132-34200151 | None:intergenic | 15.0% |
| !!! | AAAATATGAATTTTACATAG+GGG | + | chr4_3:34200617-34200636 | None:intergenic | 15.0% |
| !! | CTACAGATAAAAATTTATTA+TGG | - | chr4_3:34200647-34200666 | Msa0638680:intron | 15.0% |
| !! | AAATAAAATGTGAGAATAAA+AGG | + | chr4_3:34201309-34201328 | None:intergenic | 15.0% |
| !! | AAAATATTCTGTCAATTAAA+AGG | + | chr4_3:34202018-34202037 | None:intergenic | 15.0% |
| !! | AATAAAAAGATAACAATGAT+TGG | - | chr4_3:34202142-34202161 | Msa0638680:intron | 15.0% |
| !! | TTATTAATCACGAATTTACA+TGG | - | chr4_3:34198651-34198670 | Msa0638680:intron | 20.0% |
| !!! | ACTAATTTTACTTTTGTGTT+TGG | + | chr4_3:34198865-34198884 | None:intergenic | 20.0% |
| !! | GTTAATTAATCAAACTTCAT+GGG | - | chr4_3:34199121-34199140 | Msa0638680:intron | 20.0% |
| !! | AAAATAAAGAGATACAAGAT+CGG | + | chr4_3:34200000-34200019 | None:intergenic | 20.0% |
| !!! | TCAGTTTTTTTTGTTTTGTT+CGG | - | chr4_3:34200557-34200576 | Msa0638680:intron | 20.0% |
| !!! | TATGAATTTTATATTTTCCG+CGG | - | chr4_3:34200722-34200741 | Msa0638680:intron | 20.0% |
| !!! | TAAATATGAATTTTTAACCG+CGG | + | chr4_3:34200742-34200761 | None:intergenic | 20.0% |
| !! | TGAAAAAAAAAAAGTCTGTT+AGG | - | chr4_3:34200992-34201011 | Msa0638680:intron | 20.0% |
| !! | AACTAAAACTCAAACTTAAA+AGG | + | chr4_3:34201285-34201304 | None:intergenic | 20.0% |
| !!! | AATTTTTTTTTCTAGCTTGT+TGG | - | chr4_3:34201488-34201507 | Msa0638680:intron | 20.0% |
| !!! | ACATTGAAATATGATTTTCA+AGG | + | chr4_3:34201793-34201812 | None:intergenic | 20.0% |
| !!! | GAGTAATATTTTTGTTTTTG+AGG | + | chr4_3:34201896-34201915 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGTTGAAAGAAAG+AGG | - | chr4_3:34202081-34202100 | Msa0638680:intron | 20.0% |
| ! | TAATCGACTAATAAATTGCA+AGG | + | chr4_3:34198818-34198837 | None:intergenic | 25.0% |
| ! | AAACAAAACCAAAATTCACT+TGG | + | chr4_3:34198921-34198940 | None:intergenic | 25.0% |
| !!! | AAGTGAATTTTGGTTTTGTT+TGG | - | chr4_3:34198920-34198939 | Msa0638680:intron | 25.0% |
| ! | ATTAAAATACCTAACCTGAA+GGG | + | chr4_3:34199067-34199086 | None:intergenic | 25.0% |
| ! | AATTAAAATACCTAACCTGA+AGG | + | chr4_3:34199068-34199087 | None:intergenic | 25.0% |
| ! | GGTTAATTAATCAAACTTCA+TGG | - | chr4_3:34199120-34199139 | Msa0638680:intron | 25.0% |
| !! | TTTTCAATGATTGTCAAACT+TGG | - | chr4_3:34199167-34199186 | Msa0638680:intron | 25.0% |
| ! | ATAAAAGCTCTTTCGAAAAA+CGG | + | chr4_3:34199430-34199449 | None:intergenic | 25.0% |
| ! | AAATCAAATCAACTTAACCT+AGG | + | chr4_3:34199927-34199946 | None:intergenic | 25.0% |
| ! | ATACGAGCTTAGTTAAAAAT+AGG | + | chr4_3:34200190-34200209 | None:intergenic | 25.0% |
| ! | TAAGCTCGTATGTAAAATTA+GGG | - | chr4_3:34200199-34200218 | Msa0638680:intron | 25.0% |
| ! | ATTTAGCAAACAAATCAGTT+CGG | + | chr4_3:34200258-34200277 | None:intergenic | 25.0% |
| ! | GACAATGCATAATATATGTA+AGG | + | chr4_3:34200354-34200373 | None:intergenic | 25.0% |
| !! | CTGAACTGAACAATTATTTT+TGG | - | chr4_3:34200385-34200404 | Msa0638680:intron | 25.0% |
| ! | GTGTGTGAATTTAATTCTAA+TGG | + | chr4_3:34201049-34201068 | None:intergenic | 25.0% |
| ! | TAAATGTTAGACATTGAGAT+GGG | + | chr4_3:34201553-34201572 | None:intergenic | 25.0% |
| ! | TTAAATGTTAGACATTGAGA+TGG | + | chr4_3:34201554-34201573 | None:intergenic | 25.0% |
| !! | TTTTGTGATGACAATTTTGA+TGG | - | chr4_3:34201576-34201595 | Msa0638680:intron | 25.0% |
| ! | AACAATTTATAAAACCCACT+TGG | - | chr4_3:34201627-34201646 | Msa0638680:intron | 25.0% |
| ! | ACAATTTATAAAACCCACTT+GGG | - | chr4_3:34201628-34201647 | Msa0638680:intron | 25.0% |
| !! | AATTTAAGGTGAGTTATGTT+TGG | + | chr4_3:34201820-34201839 | None:intergenic | 25.0% |
| !! | CTAGCTAATTTTGTCAAAAA+AGG | + | chr4_3:34201920-34201939 | None:intergenic | 25.0% |
| !! | TGAAGGAGAATGAAATTTTA+GGG | + | chr4_3:34202331-34202350 | None:intergenic | 25.0% |
| !! | ATGAAGGAGAATGAAATTTT+AGG | + | chr4_3:34202332-34202351 | None:intergenic | 25.0% |
| ! | CCATTGTAAAAATTTGATGA+AGG | + | chr4_3:34202348-34202367 | None:intergenic | 25.0% |
| !! | CCTTCATCAAATTTTTACAA+TGG | - | chr4_3:34202345-34202364 | Msa0638680:CDS | 25.0% |
| ! | AAACTGAACCAAGTGAATTT+TGG | - | chr4_3:34198910-34198929 | Msa0638680:intron | 30.0% |
| ACTTCACTTTACTTTACTCT+AGG | + | chr4_3:34198979-34198998 | None:intergenic | 30.0% | |
| AGTAAAGTAAAGTGAAGTCA+AGG | - | chr4_3:34198981-34199000 | Msa0638680:intron | 30.0% | |
| GTAAAGTAAAGTGAAGTCAA+GGG | - | chr4_3:34198982-34199001 | Msa0638680:intron | 30.0% | |
| AAGGGAGATTCATAAGTTAA+TGG | - | chr4_3:34199000-34199019 | Msa0638680:intron | 30.0% | |
| AGGGAGATTCATAAGTTAAT+GGG | - | chr4_3:34199001-34199020 | Msa0638680:intron | 30.0% | |
| TTAAAATACCTAACCTGAAG+GGG | + | chr4_3:34199066-34199085 | None:intergenic | 30.0% | |
| GTTTCCTCACTAAATAAGAT+GGG | - | chr4_3:34199093-34199112 | Msa0638680:intron | 30.0% | |
| ! | GAAGCTAGAAAATGTTTTTC+AGG | - | chr4_3:34199205-34199224 | Msa0638680:intron | 30.0% |
| ! | TGTCTTTTCATCACTTCAAA+TGG | - | chr4_3:34199337-34199356 | Msa0638680:intron | 30.0% |
| ! | TGTTTTGTGATACGTGAATT+TGG | - | chr4_3:34199449-34199468 | Msa0638680:intron | 30.0% |
| AAGAAACAGAGTTTGAACTA+GGG | + | chr4_3:34199500-34199519 | None:intergenic | 30.0% | |
| TAAGAAACAGAGTTTGAACT+AGG | + | chr4_3:34199501-34199520 | None:intergenic | 30.0% | |
| ! | TAGTTCAAACTCTGTTTCTT+AGG | - | chr4_3:34199500-34199519 | Msa0638680:intron | 30.0% |
| ! | AGTTCAAACTCTGTTTCTTA+GGG | - | chr4_3:34199501-34199520 | Msa0638680:intron | 30.0% |
| GATTTATCAAGCGAATTCTT+CGG | - | chr4_3:34199531-34199550 | Msa0638680:intron | 30.0% | |
| ATTTATCAAGCGAATTCTTC+GGG | - | chr4_3:34199532-34199551 | Msa0638680:intron | 30.0% | |
| AAAAATTGTGTCTTTCACCA+AGG | - | chr4_3:34199555-34199574 | Msa0638680:intron | 30.0% | |
| TTACTCGAAATCTCACTTAT+AGG | + | chr4_3:34199584-34199603 | None:intergenic | 30.0% | |
| ATTGATATTGACACATCTGA+GGG | - | chr4_3:34199661-34199680 | Msa0638680:intron | 30.0% | |
| GTATCCGAACTGAATTATTT+CGG | - | chr4_3:34199838-34199857 | Msa0638680:intron | 30.0% | |
| TATCCGAACTGAATTATTTC+GGG | - | chr4_3:34199839-34199858 | Msa0638680:intron | 30.0% | |
| TAACCCGAAATAATTCAGTT+CGG | + | chr4_3:34199845-34199864 | None:intergenic | 30.0% | |
| !! | ACTGAATTATTTCGGGTTAA+AGG | - | chr4_3:34199846-34199865 | Msa0638680:intron | 30.0% |
| TAACCTAGGTACAATTCAAA+CGG | + | chr4_3:34199913-34199932 | None:intergenic | 30.0% | |
| TAACCTAGGTACAATTCAAA+CGG | + | chr4_3:34199913-34199932 | None:intergenic | 30.0% | |
| GAGCTTAGTTAAAAATAGGA+AGG | + | chr4_3:34200186-34200205 | None:intergenic | 30.0% | |
| CTAAGCTCGTATGTAAAATT+AGG | - | chr4_3:34200198-34200217 | Msa0638680:intron | 30.0% | |
| AAGCTCGTATGTAAAATTAG+GGG | - | chr4_3:34200200-34200219 | Msa0638680:intron | 30.0% | |
| !!! | TGTTTCGAACTGAACTTTTT+TGG | - | chr4_3:34200303-34200322 | Msa0638680:intron | 30.0% |
| CATAATATATGTAAGGTTCG+AGG | + | chr4_3:34200347-34200366 | None:intergenic | 30.0% | |
| GAAACTGAACTGAAACAATT+CGG | + | chr4_3:34200519-34200538 | None:intergenic | 30.0% | |
| AGTTTCAGAATTGTCAGTAA+TGG | - | chr4_3:34200533-34200552 | Msa0638680:intron | 30.0% | |
| ! | TATGAATTTTACATAGGGGT+GGG | + | chr4_3:34200613-34200632 | None:intergenic | 30.0% |
| ! | ATATGAATTTTACATAGGGG+TGG | + | chr4_3:34200614-34200633 | None:intergenic | 30.0% |
| !!! | TCCTAGATTTTTAGTCTGTT+AGG | - | chr4_3:34200961-34200980 | Msa0638680:intron | 30.0% |
| TCCTAACAGACTAAAAATCT+AGG | + | chr4_3:34200965-34200984 | None:intergenic | 30.0% | |
| GGTTTATCAATTCATCTAAG+AGG | + | chr4_3:34201028-34201047 | None:intergenic | 30.0% | |
| TAAATTCACACACAACTGTA+AGG | - | chr4_3:34201056-34201075 | Msa0638680:intron | 30.0% | |
| TTTGTAAATCAGCATTTGCT+AGG | - | chr4_3:34201112-34201131 | Msa0638680:intron | 30.0% | |
| CTTAGAATAATAAGAACCGT+TGG | + | chr4_3:34201181-34201200 | None:intergenic | 30.0% | |
| AAAATAGAATACCGTTGAGT+TGG | + | chr4_3:34201261-34201280 | None:intergenic | 30.0% | |
| ! | AATATTTTTCTGCACCAACA+AGG | - | chr4_3:34202030-34202049 | Msa0638680:intron | 30.0% |
| CAATGATTGGAAAAGATCAA+CGG | - | chr4_3:34202155-34202174 | Msa0638680:intron | 30.0% | |
| AAAGGTGAATCTGTTCAAAG+CGG | + | chr4_3:34198542-34198561 | None:intergenic | 35.0% | |
| ACTTTACTTTACTCTAGGCT+GGG | + | chr4_3:34198974-34198993 | None:intergenic | 35.0% | |
| GGGAGATTCATAAGTTAATG+GGG | - | chr4_3:34199002-34199021 | Msa0638680:intron | 35.0% | |
| CACTAACTAGGAATCAAAGA+AGG | + | chr4_3:34199029-34199048 | None:intergenic | 35.0% | |
| TAAAATACCTAACCTGAAGG+GGG | + | chr4_3:34199065-34199084 | None:intergenic | 35.0% | |
| CGTTTCCTCACTAAATAAGA+TGG | - | chr4_3:34199092-34199111 | Msa0638680:intron | 35.0% | |
| TTCATACGTCTGATTTCATG+TGG | - | chr4_3:34199372-34199391 | Msa0638680:intron | 35.0% | |
| ! | CGTGAATTTGGTTTCTATGT+TGG | - | chr4_3:34199461-34199480 | Msa0638680:intron | 35.0% |
| ATCTCACTTATAGGATTCCT+TGG | + | chr4_3:34199575-34199594 | None:intergenic | 35.0% | |
| CTCAGATGTGTCAATATCAA+TGG | + | chr4_3:34199662-34199681 | None:intergenic | 35.0% | |
| CATTGATATTGACACATCTG+AGG | - | chr4_3:34199660-34199679 | Msa0638680:intron | 35.0% | |
| CTTATCCTTCTTCTTGTTAC+CGG | - | chr4_3:34199701-34199720 | Msa0638680:intron | 35.0% | |
| TCCATCATACATGATTGAGT+TGG | - | chr4_3:34199799-34199818 | Msa0638680:intron | 35.0% | |
| TCCAACTCAATCATGTATGA+TGG | + | chr4_3:34199803-34199822 | None:intergenic | 35.0% | |
| !! | GATTGAGTTGGAAAAACTTC+TGG | - | chr4_3:34199811-34199830 | Msa0638680:intron | 35.0% |
| AGTTGGAAAAACTTCTGGAT+AGG | - | chr4_3:34199816-34199835 | Msa0638680:intron | 35.0% | |
| AACCTAGGTACAATTCAAAC+GGG | + | chr4_3:34199912-34199931 | None:intergenic | 35.0% | |
| GATGACATTAGACTTAACCT+AGG | + | chr4_3:34199978-34199997 | None:intergenic | 35.0% | |
| ! | GTGAAGATGGAAAACTTTTG+AGG | + | chr4_3:34200159-34200178 | None:intergenic | 35.0% |
| ATAGGAAGGAAAAGTGAAGA+TGG | + | chr4_3:34200172-34200191 | None:intergenic | 35.0% | |
| TCGTATGTAAAATTAGGGGA+GGG | - | chr4_3:34200204-34200223 | Msa0638680:intron | 35.0% | |
| AAGTTCAGTTCGAAACAGTT+CGG | + | chr4_3:34200300-34200319 | None:intergenic | 35.0% | |
| !!! | TTCGAACTGAACTTTTTTGG+TGG | - | chr4_3:34200306-34200325 | Msa0638680:intron | 35.0% |
| GTTCAGTTCAGTTCAAAACA+GGG | + | chr4_3:34200376-34200395 | None:intergenic | 35.0% | |
| TGTTCAGTTCAGTTCAAAAC+AGG | + | chr4_3:34200377-34200396 | None:intergenic | 35.0% | |
| ! | CAGTTCGATTTGAAACAGTT+CGG | + | chr4_3:34200479-34200498 | None:intergenic | 35.0% |
| TGAACTGAAACAATTCGGTT+CGG | + | chr4_3:34200514-34200533 | None:intergenic | 35.0% | |
| ! | TTCTAAGAAACTTACCAGCT+TGG | - | chr4_3:34201194-34201213 | Msa0638680:intron | 35.0% |
| TTTATAAAACCCACTTGGGT+TGG | - | chr4_3:34201632-34201651 | Msa0638680:intron | 35.0% | |
| GATTCTCACTGATGTCAATT+TGG | - | chr4_3:34201704-34201723 | Msa0638680:intron | 35.0% | |
| ! | AGGATTGTTTGAGATTGTTG+TGG | + | chr4_3:34202260-34202279 | None:intergenic | 35.0% |
| TGTAGAAGAATTGAGAGAGT+AGG | + | chr4_3:34202280-34202299 | None:intergenic | 35.0% | |
| AAAGGTGAATCTGTTCAAAG+CGG | + | chr4_3:34198542-34198561 | None:intergenic | 35.0% | |
| ! | CACAGTTGTGTTGATGTTTG+TGG | - | chr4_3:34198222-34198241 | Msa0638680:CDS | 40.0% |
| GATGTTTGTGGCTACACTAT+TGG | - | chr4_3:34198234-34198253 | Msa0638680:CDS | 40.0% | |
| TGATGAAGGAGATTGAGCAA+TGG | + | chr4_3:34198269-34198288 | None:intergenic | 40.0% | |
| GATATGGTTGGAGATGATGA+AGG | + | chr4_3:34198283-34198302 | None:intergenic | 40.0% | |
| ATCATCTCCAACCATATCAC+CGG | - | chr4_3:34198285-34198304 | Msa0638680:CDS | 40.0% | |
| TTGAGAAGGAGTAGTAGAGA+TGG | + | chr4_3:34198491-34198510 | None:intergenic | 40.0% | |
| TTGAACAGATTCACCTTTGC+TGG | - | chr4_3:34198544-34198563 | Msa0638680:intron | 40.0% | |
| CTTTACTTTACTCTAGGCTG+GGG | + | chr4_3:34198973-34198992 | None:intergenic | 40.0% | |
| CACTTTACTTTACTCTAGGC+TGG | + | chr4_3:34198975-34198994 | None:intergenic | 40.0% | |
| CAAGGAAAGAGACACTAACT+AGG | + | chr4_3:34199041-34199060 | None:intergenic | 40.0% | |
| CTAGTTAGTGTCTCTTTCCT+TGG | - | chr4_3:34199039-34199058 | Msa0638680:intron | 40.0% | |
| ! | AGAGCCCATCTTATTTAGTG+AGG | + | chr4_3:34199100-34199119 | None:intergenic | 40.0% |
| ! | TCACTAAATAAGATGGGCTC+TGG | - | chr4_3:34199099-34199118 | Msa0638680:intron | 40.0% |
| CTCGAAGTTGGAGAAATGTT+TGG | + | chr4_3:34199276-34199295 | None:intergenic | 40.0% | |
| GAAAACATCTCACTCGAAGT+TGG | + | chr4_3:34199288-34199307 | None:intergenic | 40.0% | |
| ! | TCGAGTGAGATGTTTTCTTG+TGG | - | chr4_3:34199291-34199310 | Msa0638680:intron | 40.0% |
| CGTCTGATTTCATGTGGAAT+AGG | - | chr4_3:34199378-34199397 | Msa0638680:intron | 40.0% | |
| TTCGAAAAACGGTATCAGAG+TGG | + | chr4_3:34199419-34199438 | None:intergenic | 40.0% | |
| ACAGAGTTTGAACTAGGGAA+TGG | + | chr4_3:34199495-34199514 | None:intergenic | 40.0% | |
| CGGTAACAAGAAGAAGGATA+AGG | + | chr4_3:34199703-34199722 | None:intergenic | 40.0% | |
| GATATCCGGTAACAAGAAGA+AGG | + | chr4_3:34199709-34199728 | None:intergenic | 40.0% | |
| ATGTGTCTGAACGAGATATC+CGG | + | chr4_3:34199723-34199742 | None:intergenic | 40.0% | |
| !! | CTCGTTGCTCTGAAACAATT+AGG | - | chr4_3:34199877-34199896 | Msa0638680:intron | 40.0% |
| TTCCCGTTTGAATTGTACCT+AGG | - | chr4_3:34199958-34199977 | Msa0638680:intron | 40.0% | |
| CTCGTATGTAAAATTAGGGG+AGG | - | chr4_3:34200203-34200222 | Msa0638680:intron | 40.0% | |
| GCAAACAAATCAGTTCGGTT+CGG | + | chr4_3:34200253-34200272 | None:intergenic | 40.0% | |
| !!! | GAACTGAACTTTTTTGGTGG+AGG | - | chr4_3:34200309-34200328 | Msa0638680:intron | 40.0% |
| !!! | AACTTTTTTGGTGGAGGTCA+GGG | - | chr4_3:34200315-34200334 | Msa0638680:intron | 40.0% |
| TTCGGTTCAGTTCAACAGTT+CGG | - | chr4_3:34200575-34200594 | Msa0638680:intron | 40.0% | |
| TTCAGTTCAACAGTTCGGTT+CGG | - | chr4_3:34200580-34200599 | Msa0638680:intron | 40.0% | |
| AATAGCAACCATCTGTCCAA+CGG | - | chr4_3:34201162-34201181 | Msa0638680:intron | 40.0% | |
| AATAAGAACCGTTGGACAGA+TGG | + | chr4_3:34201173-34201192 | None:intergenic | 40.0% | |
| !! | CTAGCTTGTTGGTGTTGATT+TGG | - | chr4_3:34201499-34201518 | Msa0638680:intron | 40.0% |
| !! | TGGTGTTGATTTGGTGATGT+TGG | - | chr4_3:34201508-34201527 | Msa0638680:intron | 40.0% |
| ATCGAATTAAGACCTCGAGA+AGG | + | chr4_3:34201687-34201706 | None:intergenic | 40.0% | |
| GAATCCTTGCTAATCCTTGT+TGG | + | chr4_3:34202047-34202066 | None:intergenic | 40.0% | |
| GAAAAGATCAACGGCTCATA+AGG | - | chr4_3:34202164-34202183 | Msa0638680:intron | 40.0% | |
| GATATGGTAGGAGATGAAGA+TGG | + | chr4_3:34202436-34202455 | None:intergenic | 40.0% | |
| TTGAACAGATTCACCTTTGC+CGG | - | chr4_3:34198544-34198563 | Msa0638680:intron | 40.0% | |
| TGAAGGAGATTGAGCAATGG+TGG | + | chr4_3:34198266-34198285 | None:intergenic | 45.0% | |
| !! | ATGGATGATGGAGTAACAGC+AGG | + | chr4_3:34198472-34198491 | None:intergenic | 45.0% |
| GGAGTAGTAGAGATGGATGA+TGG | + | chr4_3:34198484-34198503 | None:intergenic | 45.0% | |
| GAAAAACGGTATCAGAGTGG+AGG | + | chr4_3:34199416-34199435 | None:intergenic | 45.0% | |
| ! | GCACGTGTGCGAAGATATTT+TGG | - | chr4_3:34199625-34199644 | Msa0638680:intron | 45.0% |
| TCGCCGTTTGAATTGTACCT+AGG | - | chr4_3:34199907-34199926 | Msa0638680:intron | 45.0% | |
| !!! | GAACTTTTTTGGTGGAGGTC+AGG | - | chr4_3:34200314-34200333 | Msa0638680:intron | 45.0% |
| CAAAGTCTGATGTCGTAACC+TGG | + | chr4_3:34201096-34201115 | None:intergenic | 45.0% | |
| ! | TCAGCATTTGCTAGGTCTCT+TGG | - | chr4_3:34201120-34201139 | Msa0638680:intron | 45.0% |
| ! | CAGCATTTGCTAGGTCTCTT+GGG | - | chr4_3:34201121-34201140 | Msa0638680:intron | 45.0% |
| ATGAATGAGCAAGTCCAAGC+TGG | + | chr4_3:34201211-34201230 | None:intergenic | 45.0% | |
| !! | TTGGTCCAGTGGTATTGGTT+TGG | - | chr4_3:34201651-34201670 | Msa0638680:intron | 45.0% |
| !! | TGGTCCAGTGGTATTGGTTT+GGG | - | chr4_3:34201652-34201671 | Msa0638680:intron | 45.0% |
| AGATCCCAAACCAATACCAC+TGG | + | chr4_3:34201659-34201678 | None:intergenic | 45.0% | |
| CTCACTGATGTCAATTTGGC+TGG | - | chr4_3:34201708-34201727 | Msa0638680:intron | 45.0% | |
| ! | TGCACCAACAAGGATTAGCA+AGG | - | chr4_3:34202040-34202059 | Msa0638680:intron | 45.0% |
| ! | TTGTTGTGGAAGAAGAGCAC+AGG | + | chr4_3:34202246-34202265 | None:intergenic | 45.0% |
| ! | CACAGTTGTGTTGATGCTTG+TGG | - | chr4_3:34202375-34202394 | Msa0638680:CDS | 45.0% |
| GATGCTTGTGGCTACACTAT+TGG | - | chr4_3:34202387-34202406 | Msa0638680:CDS | 45.0% | |
| TGAAGATGGAGATTGAGCGA+AGG | + | chr4_3:34202422-34202441 | None:intergenic | 45.0% | |
| !! | GGAGATCGATGATGGAGTAA+CGG | + | chr4_3:34202614-34202633 | None:intergenic | 45.0% |
| !! | ATATATAATATTATGTTTAA+TGG | - | chr4_3:34200050-34200069 | Msa0638680:intron | 5.0% |
| !! | ACTAAAATAAAATAAAAAAT+TGG | + | chr4_3:34200108-34200127 | None:intergenic | 5.0% |
| !!! | GATTTTTTATAATTTTTTAA+AGG | + | chr4_3:34200413-34200432 | None:intergenic | 5.0% |
| !!! | AAAATATTCTAATTATTTTT+AGG | + | chr4_3:34200684-34200703 | None:intergenic | 5.0% |
| !! | TTAAAATAACTAAAATAAAA+CGG | - | chr4_3:34200907-34200926 | Msa0638680:intron | 5.0% |
| ATGGCAGATGGTGAAGGAGA+TGG | + | chr4_3:34198397-34198416 | None:intergenic | 50.0% | |
| !! | GAGTTGATGGCAGATGGTGA+AGG | + | chr4_3:34198403-34198422 | None:intergenic | 50.0% |
| !! | AGGAGATGGTGGAGAGTTGA+TGG | + | chr4_3:34198416-34198435 | None:intergenic | 50.0% |
| AGTAACAGCAGGAGAGACAG+CGG | + | chr4_3:34198461-34198480 | None:intergenic | 50.0% | |
| !! | GAAGGAGAAGGTGCTTGAGA+AGG | + | chr4_3:34198505-34198524 | None:intergenic | 50.0% |
| GCGGAGTTATCAGAAGGAGA+AGG | + | chr4_3:34198517-34198536 | None:intergenic | 50.0% | |
| GGTGAATCTGTTCAAAGCGG+CGG | + | chr4_3:34198539-34198558 | None:intergenic | 50.0% | |
| AGCAGCAGCGAAAACCACAA+CGG | + | chr4_3:34198578-34198597 | None:intergenic | 50.0% | |
| ACTTCAAATGGCCGCGATCT+GGG | - | chr4_3:34199349-34199368 | Msa0638680:intron | 50.0% | |
| AGACGTATGAACCCAGATCG+CGG | + | chr4_3:34199363-34199382 | None:intergenic | 50.0% | |
| TGTAAAATTAGGGGAGGGCG+TGG | - | chr4_3:34200209-34200228 | Msa0638680:intron | 50.0% | |
| CACACACAACTGTAAGGTCC+CGG | - | chr4_3:34201062-34201081 | Msa0638680:intron | 50.0% | |
| ACACACAACTGTAAGGTCCC+GGG | - | chr4_3:34201063-34201082 | Msa0638680:intron | 50.0% | |
| TCGTAACCTGGATTCGAACC+CGG | + | chr4_3:34201084-34201103 | None:intergenic | 50.0% | |
| GAAGAGGCAACAAGCTGGTA+GGG | + | chr4_3:34201235-34201254 | None:intergenic | 50.0% | |
| TGAAGAGGCAACAAGCTGGT+AGG | + | chr4_3:34201236-34201255 | None:intergenic | 50.0% | |
| !! | TTGGGTTGGTCCAGTGGTAT+TGG | - | chr4_3:34201646-34201665 | Msa0638680:intron | 50.0% |
| ! | GTGGAAGAAGAGCACAGGAT+TGG | + | chr4_3:34202241-34202260 | None:intergenic | 50.0% |
| GTTGCAACAGGGGATATGGT+AGG | + | chr4_3:34202448-34202467 | None:intergenic | 50.0% | |
| ! | AGGTGTTGCAACAGGGGATA+TGG | + | chr4_3:34202452-34202471 | None:intergenic | 50.0% |
| ! | TGATCGCAGGTGTTGCAACA+GGG | + | chr4_3:34202459-34202478 | None:intergenic | 50.0% |
| ATGGCAGATGGTGAAGGAGA+GGG | + | chr4_3:34198397-34198416 | None:intergenic | 50.0% | |
| !! | GAGTTGATGGCAGATGGTGA+AGG | + | chr4_3:34198403-34198422 | None:intergenic | 50.0% |
| !! | AGGAGATGGTGGAGAGTTGA+TGG | + | chr4_3:34198416-34198435 | None:intergenic | 50.0% |
| !! | ATCGATGATGGAGTAACGGC+AGG | + | chr4_3:34202610-34202629 | None:intergenic | 50.0% |
| ATCTCCACTCCTCCTTCTGA+AGG | - | chr4_3:34202628-34202647 | Msa0638680:CDS | 50.0% | |
| TTTGCGGAAGGACCTTCAGA+AGG | + | chr4_3:34202643-34202662 | None:intergenic | 50.0% | |
| TCTGAAGGTCCTTCCGCAAA+CGG | - | chr4_3:34202643-34202662 | Msa0638680:CDS | 50.0% | |
| AACCACAACAGCAGCAGATC+CGG | + | chr4_3:34202695-34202714 | None:intergenic | 50.0% | |
| GTGGCAACCGGTGATATGGT+TGG | + | chr4_3:34198295-34198314 | None:intergenic | 55.0% | |
| TGGAGTGGCAACCGGTGATA+TGG | + | chr4_3:34198299-34198318 | None:intergenic | 55.0% | |
| GATGGTGCCTGAGAGGACTT+GGG | + | chr4_3:34198322-34198341 | None:intergenic | 55.0% | |
| AGATGGTGCCTGAGAGGACT+TGG | + | chr4_3:34198323-34198342 | None:intergenic | 55.0% | |
| ATCTCCTTCCGCTGTCTCAC+CGG | - | chr4_3:34198339-34198358 | Msa0638680:CDS | 55.0% | |
| !! | GCGTTCTTCACAGGTACTGG+AGG | + | chr4_3:34198373-34198392 | None:intergenic | 55.0% |
| ! | GGAGCGTTCTTCACAGGTAC+TGG | + | chr4_3:34198376-34198395 | None:intergenic | 55.0% |
| ! | GGAGATGGAGCGTTCTTCAC+AGG | + | chr4_3:34198382-34198401 | None:intergenic | 55.0% |
| !! | GGTGGAGAGTTGATGGCAGA+TGG | + | chr4_3:34198409-34198428 | None:intergenic | 55.0% |
| GATGAAGCAGGAGGAGGAGA+TGG | + | chr4_3:34198430-34198449 | None:intergenic | 55.0% | |
| GTAACAGCAGGAGAGACAGC+GGG | + | chr4_3:34198460-34198479 | None:intergenic | 55.0% | |
| GAATCTGTTCAAAGCGGCGG+CGG | + | chr4_3:34198536-34198555 | None:intergenic | 55.0% | |
| AACGGCAGCAGATCCAGCAA+AGG | + | chr4_3:34198560-34198579 | None:intergenic | 55.0% | |
| CACTTCAAATGGCCGCGATC+TGG | - | chr4_3:34199348-34199367 | Msa0638680:intron | 55.0% | |
| ! | AATTAGGGGAGGGCGTGGTT+TGG | - | chr4_3:34200214-34200233 | Msa0638680:intron | 55.0% |
| CGTAACCTGGATTCGAACCC+GGG | + | chr4_3:34201083-34201102 | None:intergenic | 55.0% | |
| GCCTCTTCACGCCAACTCAA+CGG | - | chr4_3:34201247-34201266 | Msa0638680:intron | 55.0% | |
| !! | ACCGTTGAGTTGGCGTGAAG+AGG | + | chr4_3:34201251-34201270 | None:intergenic | 55.0% |
| ACCACTGGACCAACCCAAGT+GGG | + | chr4_3:34201644-34201663 | None:intergenic | 55.0% | |
| TACCACTGGACCAACCCAAG+TGG | + | chr4_3:34201645-34201664 | None:intergenic | 55.0% | |
| ACGCGTGTAGACGCGTTTCT+AGG | + | chr4_3:34202196-34202215 | None:intergenic | 55.0% | |
| ! | GATCGCAGGTGTTGCAACAG+GGG | + | chr4_3:34202458-34202477 | None:intergenic | 55.0% |
| ! | GTGATCGCAGGTGTTGCAAC+AGG | + | chr4_3:34202460-34202479 | None:intergenic | 55.0% |
| GATGGCAGATGGTGAAGGAG+AGG | + | chr4_3:34198398-34198417 | None:intergenic | 55.0% | |
| !! | GGTGGAGAGTTGATGGCAGA+TGG | + | chr4_3:34198409-34198428 | None:intergenic | 55.0% |
| GAAGCAGGAGAAGGAGATGG+TGG | + | chr4_3:34202565-34202584 | None:intergenic | 55.0% | |
| GAGGAAGCAGGAGAAGGAGA+TGG | + | chr4_3:34202568-34202587 | None:intergenic | 55.0% | |
| AGTAACGGCAGGAGAGACAG+CGG | + | chr4_3:34202599-34202618 | None:intergenic | 55.0% | |
| GGAGGAGTGGAGATCGATGA+TGG | + | chr4_3:34202622-34202641 | None:intergenic | 55.0% | |
| AGGACCTTCAGAAGGAGGAG+TGG | + | chr4_3:34202635-34202654 | None:intergenic | 55.0% | |
| AACAGCAGCAGATCCGGCAA+AGG | + | chr4_3:34202689-34202708 | None:intergenic | 55.0% | |
| GACTTGGGTGGAGTGGCAAC+CGG | + | chr4_3:34198307-34198326 | None:intergenic | 60.0% | |
| CTGAGAGGACTTGGGTGGAG+TGG | + | chr4_3:34198314-34198333 | None:intergenic | 60.0% | |
| CACTCCACCCAAGTCCTCTC+AGG | - | chr4_3:34198312-34198331 | Msa0638680:CDS | 60.0% | |
| GGAAGGAGATGGTGCCTGAG+AGG | + | chr4_3:34198329-34198348 | None:intergenic | 60.0% | |
| GGTGAGACAGCGGAAGGAGA+TGG | + | chr4_3:34198340-34198359 | None:intergenic | 60.0% | |
| AGATGCCACCGGTGAGACAG+CGG | + | chr4_3:34198350-34198369 | None:intergenic | 60.0% | |
| ! | GGTACTGGAGGAGATGCCAC+CGG | + | chr4_3:34198361-34198380 | None:intergenic | 60.0% |
| GAAGCAGGAGGAGGAGATGG+TGG | + | chr4_3:34198427-34198446 | None:intergenic | 60.0% | |
| GAGTCGGATGAAGCAGGAGG+AGG | + | chr4_3:34198436-34198455 | None:intergenic | 60.0% | |
| GGAGAGTCGGATGAAGCAGG+AGG | + | chr4_3:34198439-34198458 | None:intergenic | 60.0% | |
| AGGAGAGACAGCGGGAGAGT+CGG | + | chr4_3:34198452-34198471 | None:intergenic | 60.0% | |
| TGCTGGATCTGCTGCCGTTG+TGG | - | chr4_3:34198561-34198580 | Msa0638680:intron | 60.0% | |
| CTCTTTCCTTGGCCCCCTTC+AGG | - | chr4_3:34199050-34199069 | Msa0638680:intron | 60.0% | |
| ! | TCCTTGGCCCCCTTCAGGTT+AGG | - | chr4_3:34199055-34199074 | Msa0638680:intron | 60.0% |
| ACCTAACCTGAAGGGGGCCA+AGG | + | chr4_3:34199059-34199078 | None:intergenic | 60.0% | |
| AAGGTCCCGGGTTCGAATCC+AGG | - | chr4_3:34201075-34201094 | Msa0638680:intron | 60.0% | |
| GGCGTGAAGAGGCAACAAGC+TGG | + | chr4_3:34201240-34201259 | None:intergenic | 60.0% | |
| !! | ACCCACTTGGGTTGGTCCAG+TGG | - | chr4_3:34201640-34201659 | Msa0638680:intron | 60.0% |
| GGGATCTGTGCTCCTTCTCG+AGG | - | chr4_3:34201672-34201691 | Msa0638680:intron | 60.0% | |
| ! | GGAGCGCTCTTCACAGGTAC+GGG | + | chr4_3:34202514-34202533 | None:intergenic | 60.0% |
| !! | GGGAGCGCTCTTCACAGGTA+CGG | + | chr4_3:34202515-34202534 | None:intergenic | 60.0% |
| GAGTCGGAGGAAGCAGGAGA+AGG | + | chr4_3:34202574-34202593 | None:intergenic | 60.0% | |
| AGGAGAGACAGCGGGAGAGT+CGG | + | chr4_3:34198452-34198471 | None:intergenic | 60.0% | |
| GTAACGGCAGGAGAGACAGC+GGG | + | chr4_3:34202598-34202617 | None:intergenic | 60.0% | |
| GCGGAAGGACCTTCAGAAGG+AGG | + | chr4_3:34202640-34202659 | None:intergenic | 60.0% | |
| GTTCAAAGCGGCGCCGTTTG+CGG | + | chr4_3:34202659-34202678 | None:intergenic | 60.0% | |
| TGCCGGATCTGCTGCTGTTG+TGG | - | chr4_3:34202690-34202709 | Msa0638680:CDS | 60.0% | |
| GGTGCCTGAGAGGACTTGGG+TGG | + | chr4_3:34198319-34198338 | None:intergenic | 65.0% | |
| TCCTTCCGCTGTCTCACCGG+TGG | - | chr4_3:34198342-34198361 | Msa0638680:CDS | 65.0% | |
| GCGGGAGAGTCGGATGAAGC+AGG | + | chr4_3:34198442-34198461 | None:intergenic | 65.0% | |
| GCGGCGGCGGAGTTATCAGA+AGG | + | chr4_3:34198523-34198542 | None:intergenic | 65.0% | |
| TCAGCGGAGGGAGTGATCGC+AGG | + | chr4_3:34202472-34202491 | None:intergenic | 65.0% | |
| AGATGCCACCGGTGCGTCAG+CGG | + | chr4_3:34202488-34202507 | None:intergenic | 65.0% | |
| GGTACGGGTGGAGATGCCAC+CGG | + | chr4_3:34202499-34202518 | None:intergenic | 65.0% | |
| GCGCTCTTCACAGGTACGGG+TGG | + | chr4_3:34202511-34202530 | None:intergenic | 65.0% | |
| !! | GGAGAGGGAGCGCTCTTCAC+AGG | + | chr4_3:34202520-34202539 | None:intergenic | 65.0% |
| AGAGACAGCGGGAGAGTCGG+AGG | + | chr4_3:34198449-34198468 | None:intergenic | 65.0% | |
| AAAGCGGCGCCGTTTGCGGA+AGG | + | chr4_3:34202655-34202674 | None:intergenic | 65.0% | |
| GCCACCGGTGAGACAGCGGA+AGG | + | chr4_3:34198346-34198365 | None:intergenic | 70.0% | |
| ! | GGGGAGGGCGTGGTTTGGCT+CGG | - | chr4_3:34200219-34200238 | Msa0638680:intron | 70.0% |
| ! | GGGAGGGCGTGGTTTGGCTC+GGG | - | chr4_3:34200220-34200239 | Msa0638680:intron | 70.0% |
| CACTCCCTCCGCTGACGCAC+CGG | - | chr4_3:34202477-34202496 | Msa0638680:CDS | 70.0% | |
| GCGGGAGAGTCGGAGGAAGC+AGG | + | chr4_3:34202580-34202599 | None:intergenic | 70.0% | |
| TCCCTCCGCTGACGCACCGG+TGG | - | chr4_3:34202480-34202499 | Msa0638680:CDS | 75.0% | |
| GCCACCGGTGCGTCAGCGGA+GGG | + | chr4_3:34202484-34202503 | None:intergenic | 75.0% | |
| TGCCACCGGTGCGTCAGCGG+AGG | + | chr4_3:34202485-34202504 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 34198211 | 34202738 | 34198211 | ID=Msa0638680;Name=Msa0638680 |
| chr4_3 | mRNA | 34198211 | 34202738 | 34198211 | ID=Msa0638680-mRNA-1;Parent=Msa0638680;Name=Msa0638680-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|0|0|3|0|237 |
| chr4_3 | exon | 34202568 | 34202738 | 34202568 | ID=Msa0638680-mRNA-1:exon:7879;Parent=Msa0638680-mRNA-1 |
| chr4_3 | exon | 34202344 | 34202561 | 34202344 | ID=Msa0638680-mRNA-1:exon:7878;Parent=Msa0638680-mRNA-1 |
| chr4_3 | exon | 34198211 | 34198535 | 34198211 | ID=Msa0638680-mRNA-1:exon:7877;Parent=Msa0638680-mRNA-1 |
| chr4_3 | CDS | 34202568 | 34202738 | 34202568 | ID=Msa0638680-mRNA-1:cds;Parent=Msa0638680-mRNA-1 |
| chr4_3 | CDS | 34202344 | 34202561 | 34202344 | ID=Msa0638680-mRNA-1:cds;Parent=Msa0638680-mRNA-1 |
| chr4_3 | CDS | 34198211 | 34198535 | 34198211 | ID=Msa0638680-mRNA-1:cds;Parent=Msa0638680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
