Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1337450 | AES92349.2 | 89.474 | 247 | 6 | 1 | 1 | 227 | 1 | 247 | 1.73e-157 | 449 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1337450 | sp|Q38910|XTH23_ARATH | 62.992 | 254 | 56 | 3 | 8 | 225 | 5 | 256 | 4.14e-108 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1337450 | G7JD11 | 89.474 | 247 | 6 | 1 | 1 | 227 | 1 | 247 | 8.27e-158 | 449 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0614200 | Msa1337450 | 0.816003 | 6.916032e-52 | -8.615850e-47 |
| Msa0638680 | Msa1337450 | 0.802253 | 6.124670e-49 | -8.615850e-47 |
| Msa0654420 | Msa1337450 | 0.815988 | 6.970393e-52 | -8.615850e-47 |
| Msa0654480 | Msa1337450 | 0.828607 | 8.183464e-55 | -8.615850e-47 |
| Msa0719020 | Msa1337450 | 0.815645 | 8.313448e-52 | -8.615850e-47 |
| Msa0719740 | Msa1337450 | 0.869760 | 2.431670e-66 | -8.615850e-47 |
| Msa0801150 | Msa1337450 | 0.806132 | 9.540506e-50 | -8.615850e-47 |
| Msa0802750 | Msa1337450 | 0.868021 | 8.895978e-66 | -8.615850e-47 |
| Msa0839770 | Msa1337450 | 0.814258 | 1.688465e-51 | -8.615850e-47 |
| Msa0841060 | Msa1337450 | 0.860321 | 2.240393e-63 | -8.615850e-47 |
| Msa0192470 | Msa1337450 | 0.859216 | 4.821945e-63 | -8.615850e-47 |
| Msa0207680 | Msa1337450 | 0.865744 | 4.727818e-65 | -8.615850e-47 |
| Msa0207690 | Msa1337450 | 0.821057 | 4.941549e-53 | -8.615850e-47 |
| Msa0209360 | Msa1337450 | 0.833876 | 4.146357e-56 | -8.615850e-47 |
| Msa1234420 | Msa1337450 | 0.808953 | 2.403314e-50 | -8.615850e-47 |
| Msa1236860 | Msa1337450 | -0.808200 | 3.480113e-50 | -8.615850e-47 |
| Msa1253210 | Msa1337450 | 0.824066 | 9.872620e-54 | -8.615850e-47 |
| Msa1265290 | Msa1337450 | 0.865578 | 5.336500e-65 | -8.615850e-47 |
| Msa1315520 | Msa1337450 | 0.816491 | 5.380898e-52 | -8.615850e-47 |
| Msa1317240 | Msa1337450 | -0.803090 | 4.114739e-49 | -8.615850e-47 |
| Msa1337450 | Msa1337460 | 0.841217 | 5.433836e-58 | -8.615850e-47 |
| Msa1337450 | Msa1338240 | 0.815462 | 9.130823e-52 | -8.615850e-47 |
| Msa1337450 | Msa1432830 | 0.822178 | 2.721336e-53 | -8.615850e-47 |
| Msa0373060 | Msa1337450 | 0.803069 | 4.155470e-49 | -8.615850e-47 |
| Msa1031180 | Msa1337450 | 0.803519 | 3.354422e-49 | -8.615850e-47 |
| Msa1035450 | Msa1337450 | 0.805983 | 1.025763e-49 | -8.615850e-47 |
| Msa1070360 | Msa1337450 | 0.800318 | 1.524916e-48 | -8.615850e-47 |
| Msa1075320 | Msa1337450 | 0.830689 | 2.549823e-55 | -8.615850e-47 |
| Msa1088160 | Msa1337450 | 0.806443 | 8.206699e-50 | -8.615850e-47 |
| Msa0267400 | Msa1337450 | 0.844026 | 9.754052e-59 | -8.615850e-47 |
| Msa0272840 | Msa1337450 | 0.856013 | 4.286697e-62 | -8.615850e-47 |
| Msa0295680 | Msa1337450 | 0.814726 | 1.330291e-51 | -8.615850e-47 |
| Msa0301750 | Msa1337450 | 0.831200 | 1.909773e-55 | -8.615850e-47 |
| Msa0334320 | Msa1337450 | 0.805864 | 1.086699e-49 | -8.615850e-47 |
| Msa1116610 | Msa1337450 | 0.819837 | 9.415765e-53 | -8.615850e-47 |
| Msa1119430 | Msa1337450 | 0.800577 | 1.350289e-48 | -8.615850e-47 |
| Msa1162750 | Msa1337450 | 0.851803 | 6.997186e-61 | -8.615850e-47 |
| Msa1200270 | Msa1337450 | 0.871481 | 6.611371e-67 | -8.615850e-47 |
| Msa1200290 | Msa1337450 | 0.861857 | 7.638725e-64 | -8.615850e-47 |
| Msa1221290 | Msa1337450 | 0.909780 | 3.901567e-82 | -8.615850e-47 |
| Msa1221300 | Msa1337450 | 0.801448 | 8.963613e-49 | -8.615850e-47 |
| Msa1221310 | Msa1337450 | 0.871759 | 5.351146e-67 | -8.615850e-47 |
| Msa0510120 | Msa1337450 | 0.843977 | 1.005022e-58 | -8.615850e-47 |
| Msa0545820 | Msa1337450 | 0.819314 | 1.239764e-52 | -8.615850e-47 |
| Msa0559660 | Msa1337450 | 0.830775 | 2.429297e-55 | -8.615850e-47 |
| Msa0576180 | Msa1337450 | 0.802758 | 4.818100e-49 | -8.615850e-47 |
| Msa0581370 | Msa1337450 | 0.925327 | 2.132051e-90 | -8.615850e-47 |
| Msa0581380 | Msa1337450 | 0.873176 | 1.800360e-67 | -8.615850e-47 |
| Msa0601700 | Msa1337450 | 0.823508 | 1.334060e-53 | -8.615850e-47 |
| Msa0930210 | Msa1337450 | 0.844431 | 7.592873e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1337450 | MtrunA17_Chr7g0258911 | 71.311 | 244 | 36 | 2 | 16 | 225 | 9 | 252 | 1.45e-122 | 351 |
| Msa1337450 | MtrunA17_Chr4g0072611 | 70.082 | 244 | 39 | 2 | 16 | 225 | 10 | 253 | 8.91e-120 | 344 |
| Msa1337450 | MtrunA17_Chr4g0072671 | 71.308 | 237 | 30 | 2 | 27 | 225 | 22 | 258 | 4.18e-114 | 330 |
| Msa1337450 | MtrunA17_Chr4g0072601 | 61.024 | 254 | 64 | 3 | 6 | 225 | 4 | 256 | 1.86e-107 | 313 |
| Msa1337450 | MtrunA17_Chr2g0299061 | 70.755 | 212 | 42 | 1 | 14 | 205 | 9 | 220 | 3.64e-104 | 305 |
| Msa1337450 | MtrunA17_Chr3g0122021 | 62.451 | 253 | 64 | 4 | 1 | 225 | 1 | 250 | 3.99e-103 | 301 |
| Msa1337450 | MtrunA17_Chr8g0377841 | 61.753 | 251 | 65 | 3 | 4 | 225 | 6 | 254 | 8.57e-103 | 301 |
| Msa1337450 | MtrunA17_Chr3g0122031 | 64.050 | 242 | 58 | 3 | 12 | 225 | 10 | 250 | 2.94e-102 | 299 |
| Msa1337450 | MtrunA17_Chr4g0071341 | 64.530 | 234 | 48 | 2 | 27 | 225 | 21 | 254 | 1.01e-101 | 298 |
| Msa1337450 | MtrunA17_Chr8g0389641 | 66.000 | 200 | 43 | 3 | 6 | 185 | 9 | 203 | 1.70e-86 | 258 |
| Msa1337450 | MtrunA17_Chr4g0072681 | 61.574 | 216 | 41 | 3 | 52 | 225 | 1 | 216 | 1.16e-84 | 253 |
| Msa1337450 | MtrunA17_Chr5g0443391 | 51.174 | 213 | 84 | 1 | 12 | 204 | 9 | 221 | 9.03e-70 | 217 |
| Msa1337450 | MtrunA17_Chr6g0486581 | 50.455 | 220 | 86 | 3 | 13 | 211 | 7 | 224 | 1.28e-69 | 216 |
| Msa1337450 | MtrunA17_Chr6g0461761 | 45.946 | 259 | 102 | 4 | 5 | 225 | 3 | 261 | 6.88e-69 | 215 |
| Msa1337450 | MtrunA17_Chr6g0461731 | 46.124 | 258 | 98 | 5 | 6 | 225 | 30 | 284 | 2.66e-68 | 214 |
| Msa1337450 | MtrunA17_Chr3g0096651 | 52.174 | 207 | 79 | 1 | 24 | 210 | 23 | 229 | 2.31e-67 | 211 |
| Msa1337450 | MtrunA17_Chr7g0252621 | 45.276 | 254 | 103 | 5 | 7 | 225 | 9 | 261 | 1.30e-66 | 209 |
| Msa1337450 | MtrunA17_Chr7g0252601 | 49.554 | 224 | 89 | 3 | 12 | 211 | 11 | 234 | 1.76e-66 | 209 |
| Msa1337450 | MtrunA17_Chr7g0252631 | 47.826 | 230 | 85 | 4 | 31 | 225 | 32 | 261 | 3.37e-66 | 208 |
| Msa1337450 | MtrunA17_Chr2g0323161 | 49.296 | 213 | 86 | 3 | 10 | 202 | 4 | 214 | 4.44e-66 | 207 |
| Msa1337450 | MtrunA17_Chr4g0054451 | 44.889 | 225 | 102 | 3 | 2 | 205 | 6 | 229 | 7.35e-66 | 207 |
| Msa1337450 | MtrunA17_Chr4g0023961 | 47.685 | 216 | 88 | 4 | 7 | 202 | 6 | 216 | 9.94e-65 | 204 |
| Msa1337450 | MtrunA17_Chr4g0054431 | 45.370 | 216 | 96 | 3 | 12 | 205 | 12 | 227 | 1.26e-63 | 201 |
| Msa1337450 | MtrunA17_Chr1g0206681 | 44.643 | 224 | 100 | 3 | 6 | 205 | 5 | 228 | 9.34e-61 | 194 |
| Msa1337450 | MtrunA17_Chr4g0072641 | 97.701 | 87 | 2 | 0 | 141 | 227 | 37 | 123 | 5.44e-58 | 182 |
| Msa1337450 | MtrunA17_Chr1g0206081 | 38.550 | 262 | 130 | 4 | 16 | 246 | 12 | 273 | 1.49e-55 | 181 |
| Msa1337450 | MtrunA17_Chr4g0072631 | 97.436 | 78 | 2 | 0 | 1 | 78 | 1 | 78 | 2.52e-50 | 161 |
| Msa1337450 | MtrunA17_Chr8g0390201 | 53.676 | 136 | 43 | 1 | 96 | 211 | 15 | 150 | 1.43e-45 | 152 |
| Msa1337450 | MtrunA17_Chr8g0340001 | 44.048 | 168 | 73 | 2 | 62 | 209 | 8 | 174 | 2.24e-40 | 140 |
| Msa1337450 | MtrunA17_Chr2g0303861 | 39.000 | 200 | 97 | 5 | 31 | 209 | 29 | 224 | 3.97e-36 | 130 |
| Msa1337450 | MtrunA17_Chr7g0264731 | 37.143 | 210 | 99 | 6 | 30 | 211 | 36 | 240 | 4.48e-35 | 127 |
| Msa1337450 | MtrunA17_Chr2g0303721 | 37.391 | 230 | 109 | 8 | 13 | 219 | 10 | 227 | 2.93e-33 | 122 |
| Msa1337450 | MtrunA17_Chr1g0180451 | 36.190 | 210 | 101 | 6 | 30 | 211 | 39 | 243 | 4.74e-33 | 122 |
| Msa1337450 | MtrunA17_Chr4g0028221 | 32.740 | 281 | 143 | 9 | 5 | 244 | 12 | 287 | 1.44e-32 | 121 |
| Msa1337450 | MtrunA17_Chr7g0235541 | 44.937 | 158 | 58 | 6 | 78 | 210 | 1 | 154 | 2.76e-32 | 118 |
| Msa1337450 | MtrunA17_Chr8g0375981 | 32.599 | 227 | 127 | 5 | 1 | 202 | 1 | 226 | 3.64e-32 | 120 |
| Msa1337450 | MtrunA17_Chr1g0161951 | 34.513 | 226 | 114 | 6 | 10 | 202 | 4 | 228 | 5.44e-32 | 120 |
| Msa1337450 | MtrunA17_Chr2g0327411 | 34.146 | 246 | 125 | 9 | 30 | 244 | 53 | 292 | 1.59e-30 | 116 |
| Msa1337450 | MtrunA17_Chr8g0365231 | 33.333 | 189 | 100 | 4 | 35 | 198 | 50 | 237 | 1.82e-28 | 110 |
| Msa1337450 | MtrunA17_Chr5g0410621 | 33.333 | 189 | 100 | 4 | 39 | 202 | 50 | 237 | 1.46e-27 | 108 |
| Msa1337450 | MtrunA17_Chr8g0382041 | 32.836 | 201 | 100 | 7 | 31 | 201 | 34 | 229 | 1.83e-24 | 100 |
| Msa1337450 | MtrunA17_Chr8g0390181 | 47.191 | 89 | 43 | 2 | 12 | 98 | 7 | 93 | 7.24e-18 | 77.0 |
| Msa1337450 | MtrunA17_Chr8g0374231 | 36.250 | 80 | 51 | 0 | 167 | 246 | 1 | 80 | 4.54e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1337450 | AT4G25810.1 | 62.992 | 254 | 56 | 3 | 8 | 225 | 5 | 256 | 4.21e-109 | 317 |
| Msa1337450 | AT5G57560.1 | 61.417 | 254 | 60 | 3 | 9 | 225 | 2 | 254 | 1.02e-106 | 311 |
| Msa1337450 | AT4G30270.1 | 63.519 | 233 | 63 | 2 | 13 | 225 | 8 | 238 | 6.80e-106 | 308 |
| Msa1337450 | AT5G57550.1 | 60.956 | 251 | 62 | 3 | 11 | 225 | 5 | 255 | 8.99e-105 | 306 |
| Msa1337450 | AT4G25820.1 | 55.926 | 270 | 91 | 4 | 22 | 267 | 21 | 286 | 6.15e-97 | 286 |
| Msa1337450 | AT5G57540.1 | 56.343 | 268 | 87 | 5 | 28 | 271 | 23 | 284 | 6.01e-96 | 284 |
| Msa1337450 | AT5G57530.1 | 55.762 | 269 | 89 | 5 | 27 | 271 | 23 | 285 | 1.27e-95 | 283 |
| Msa1337450 | AT3G23730.1 | 63.556 | 225 | 59 | 3 | 11 | 213 | 8 | 231 | 3.51e-94 | 280 |
| Msa1337450 | AT4G14130.1 | 61.161 | 224 | 66 | 2 | 8 | 211 | 6 | 228 | 3.91e-94 | 279 |
| Msa1337450 | AT2G18800.1 | 59.174 | 218 | 69 | 1 | 8 | 205 | 5 | 222 | 9.55e-94 | 279 |
| Msa1337450 | AT5G48070.1 | 53.200 | 250 | 86 | 3 | 7 | 225 | 5 | 254 | 4.59e-92 | 274 |
| Msa1337450 | AT4G30290.1 | 55.466 | 247 | 78 | 4 | 10 | 225 | 4 | 249 | 8.27e-86 | 258 |
| Msa1337450 | AT4G30280.1 | 53.386 | 251 | 86 | 3 | 6 | 225 | 4 | 254 | 6.12e-85 | 256 |
| Msa1337450 | AT1G65310.2 | 56.769 | 229 | 68 | 4 | 28 | 225 | 48 | 276 | 1.08e-82 | 251 |
| Msa1337450 | AT1G65310.1 | 56.769 | 229 | 68 | 4 | 28 | 225 | 26 | 254 | 1.32e-82 | 250 |
| Msa1337450 | AT4G28850.1 | 50.667 | 225 | 87 | 3 | 1 | 205 | 1 | 221 | 2.73e-71 | 221 |
| Msa1337450 | AT5G13870.2 | 47.059 | 255 | 95 | 4 | 11 | 225 | 7 | 261 | 5.99e-68 | 213 |
| Msa1337450 | AT5G13870.1 | 47.059 | 255 | 95 | 4 | 11 | 225 | 7 | 261 | 5.99e-68 | 213 |
| Msa1337450 | AT5G13870.3 | 47.059 | 255 | 95 | 4 | 11 | 225 | 7 | 261 | 5.99e-68 | 213 |
| Msa1337450 | AT5G65730.1 | 45.701 | 221 | 94 | 4 | 7 | 205 | 14 | 230 | 5.96e-67 | 210 |
| Msa1337450 | AT4G37800.1 | 47.442 | 215 | 90 | 4 | 14 | 205 | 15 | 229 | 2.39e-64 | 204 |
| Msa1337450 | AT2G06850.1 | 47.826 | 230 | 85 | 3 | 31 | 225 | 35 | 264 | 4.29e-64 | 203 |
| Msa1337450 | AT4G03210.1 | 45.116 | 215 | 96 | 3 | 11 | 205 | 9 | 221 | 1.88e-62 | 199 |
| Msa1337450 | AT2G06850.2 | 49.254 | 201 | 67 | 3 | 61 | 226 | 5 | 205 | 1.05e-58 | 187 |
| Msa1337450 | AT4G03210.2 | 53.179 | 173 | 58 | 3 | 53 | 205 | 24 | 193 | 1.18e-58 | 188 |
| Msa1337450 | AT2G14620.1 | 42.791 | 215 | 103 | 1 | 11 | 205 | 17 | 231 | 1.41e-58 | 189 |
| Msa1337450 | AT1G11545.1 | 39.405 | 269 | 135 | 5 | 6 | 246 | 10 | 278 | 1.58e-57 | 186 |
| Msa1337450 | AT4G13090.1 | 40.807 | 223 | 111 | 2 | 9 | 211 | 10 | 231 | 2.92e-52 | 172 |
| Msa1337450 | AT3G25050.1 | 44.271 | 192 | 84 | 3 | 31 | 202 | 35 | 223 | 1.91e-50 | 168 |
| Msa1337450 | AT2G14620.2 | 46.988 | 166 | 68 | 1 | 62 | 207 | 18 | 183 | 9.10e-49 | 162 |
| Msa1337450 | AT4G13080.1 | 42.786 | 201 | 93 | 3 | 31 | 211 | 39 | 237 | 3.59e-48 | 162 |
| Msa1337450 | AT2G14620.3 | 47.771 | 157 | 62 | 1 | 71 | 207 | 16 | 172 | 6.31e-47 | 157 |
| Msa1337450 | AT2G36870.1 | 37.931 | 203 | 93 | 6 | 30 | 204 | 42 | 239 | 3.52e-33 | 123 |
| Msa1337450 | AT3G44990.1 | 37.500 | 200 | 92 | 7 | 31 | 202 | 39 | 233 | 9.34e-33 | 122 |
| Msa1337450 | AT1G14720.1 | 32.579 | 221 | 114 | 5 | 13 | 199 | 4 | 223 | 4.32e-31 | 118 |
| Msa1337450 | AT2G01850.1 | 32.143 | 224 | 117 | 5 | 10 | 199 | 1 | 223 | 7.24e-31 | 117 |
| Msa1337450 | AT1G10550.1 | 34.536 | 194 | 101 | 4 | 42 | 210 | 52 | 244 | 4.06e-29 | 112 |
| Msa1337450 | AT1G32170.1 | 30.435 | 230 | 134 | 4 | 4 | 208 | 5 | 233 | 2.62e-28 | 111 |
| Msa1337450 | AT4G18990.1 | 32.447 | 188 | 101 | 4 | 39 | 201 | 48 | 234 | 1.89e-24 | 101 |
| Msa1337450 | AT3G48580.2 | 38.776 | 147 | 82 | 4 | 30 | 176 | 37 | 175 | 9.91e-23 | 94.7 |
| Msa1337450 | AT2G36870.2 | 39.394 | 132 | 66 | 4 | 30 | 153 | 42 | 167 | 1.17e-20 | 87.0 |
| Msa1337450 | AT3G48580.1 | 34.132 | 167 | 82 | 5 | 30 | 176 | 37 | 195 | 1.90e-18 | 83.2 |
| Msa1337450 | AT4G18990.2 | 33.333 | 120 | 57 | 3 | 104 | 201 | 42 | 160 | 1.01e-16 | 78.6 |
| Msa1337450 | AT3G48580.3 | 32.353 | 136 | 69 | 3 | 61 | 176 | 4 | 136 | 3.01e-13 | 67.8 |
Find 59 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTGTCCTCTTATCTCTAT+TGG | 0.164509 | tig0001526:+110076 | Msa1337450:CDS |
| ATCCTCATTGGTTGATTCTT+TGG | 0.185511 | tig0001526:-110788 | None:intergenic |
| ATGTTCTTGAATTCTCTTAT+TGG | 0.197118 | tig0001526:-110743 | None:intergenic |
| CGAAATTGACTTTGAATTCT+TGG | 0.204236 | tig0001526:+110474 | Msa1337450:CDS |
| CTCGACAAAGCCTCTGGTTC+TGG | 0.236949 | tig0001526:+110215 | Msa1337450:CDS |
| TGTCATCAAAAGGATCAAAT+TGG | 0.258251 | tig0001526:+110449 | Msa1337450:CDS |
| CTCCATTCACTGCATCTTAT+AGG | 0.269112 | tig0001526:+110882 | Msa1337450:CDS |
| GAGAGCAACAATTCCATCTT+TGG | 0.288359 | tig0001526:+110560 | Msa1337450:CDS |
| GAAATTGACTTTGAATTCTT+GGG | 0.344493 | tig0001526:+110475 | Msa1337450:CDS |
| TGAGGATATACTCAAGTCTA+TGG | 0.355078 | tig0001526:+110804 | Msa1337450:CDS |
| ACTTGTTGAATCCAACTCTT+GGG | 0.425232 | tig0001526:-110945 | None:intergenic |
| AGACTTGAGTATATCCTCAT+TGG | 0.432038 | tig0001526:-110800 | None:intergenic |
| GTCTATGGAATGCTGATGAT+TGG | 0.434923 | tig0001526:+110819 | Msa1337450:CDS |
| TTGACCGTTGTCGAGTATCT+TGG | 0.435436 | tig0001526:-110177 | None:intergenic |
| GACTTGTTGAATCCAACTCT+TGG | 0.435704 | tig0001526:-110946 | None:intergenic |
| GTCATCAAAAGGATCAAATT+GGG | 0.453646 | tig0001526:+110450 | Msa1337450:CDS |
| CTTTCCCTCGACAAAGCCTC+TGG | 0.461846 | tig0001526:+110209 | Msa1337450:CDS |
| ACAGTGCCTGCAGAGTTTCC+AGG | 0.474176 | tig0001526:-110296 | None:intergenic |
| GTATGCCATGGTTGATTTGA+AGG | 0.476513 | tig0001526:-110033 | None:intergenic |
| ATGCAGCTCAAGCTTGTACC+TGG | 0.480284 | tig0001526:+110278 | Msa1337450:CDS |
| ACGTTACATTTCAGCTCAGC+CGG | 0.484755 | tig0001526:-111820 | None:intergenic |
| GGCATGCAGTTGTCATCAAA+AGG | 0.488525 | tig0001526:+110439 | Msa1337450:intron |
| GAATTCTTGGGGAATGTAAG+TGG | 0.491509 | tig0001526:+110487 | Msa1337450:CDS |
| CAATTCTGTTGTCAGTTCCT+CGG | 0.492666 | tig0001526:-111773 | None:intergenic |
| TTCAAGAACATGGAATCAAA+AGG | 0.493604 | tig0001526:+110755 | Msa1337450:CDS |
| CAGTTGGATCAAACCAAAGA+TGG | 0.493971 | tig0001526:-110573 | None:intergenic |
| TTCCTATAAGATGCAGTGAA+TGG | 0.501342 | tig0001526:-110884 | None:intergenic |
| GCGGTCTTGTCAAGACAGAT+TGG | 0.512024 | tig0001526:+110852 | Msa1337450:CDS |
| TTCATTACAACATATGCAGC+AGG | 0.518113 | tig0001526:+110110 | Msa1337450:CDS |
| AATGTGTTTAGTCAAGGAAA+AGG | 0.525149 | tig0001526:+110532 | Msa1337450:CDS |
| ATCAGAACTTTGATATAACA+TGG | 0.536100 | tig0001526:+110141 | Msa1337450:CDS |
| TCTATGGAATGCTGATGATT+GGG | 0.538637 | tig0001526:+110820 | Msa1337450:CDS |
| CTTGTACCTGGAAACTCTGC+AGG | 0.539694 | tig0001526:+110290 | Msa1337450:CDS |
| CACACCAATGTGTTTAGTCA+AGG | 0.543031 | tig0001526:+110526 | Msa1337450:CDS |
| CAACAGAATTGCAGCGCGTG+TGG | 0.548886 | tig0001526:+111785 | Msa1337450:CDS |
| AAATTGACTTTGAATTCTTG+GGG | 0.553955 | tig0001526:+110476 | Msa1337450:CDS |
| ACATTGGTGTGAAGAGTGTA+TGG | 0.556406 | tig0001526:-110514 | None:intergenic |
| CGTTACATTTCAGCTCAGCC+GGG | 0.564269 | tig0001526:-111819 | None:intergenic |
| GTGTATGTATATATATAGCT+TGG | 0.570622 | tig0001526:-110011 | None:intergenic |
| TTTGATATAACATGGGGAGA+TGG | 0.571234 | tig0001526:+110149 | Msa1337450:CDS |
| AAACTACTTCATCTAATGCA+TGG | 0.572457 | tig0001526:+110918 | Msa1337450:CDS |
| CGTGTGGACTAAACTTGTCC+CGG | 0.592286 | tig0001526:+111801 | Msa1337450:CDS |
| TCAGAACTTTGATATAACAT+GGG | 0.603368 | tig0001526:+110142 | Msa1337450:CDS |
| TGCATATGTTGTAATGAAAG+TGG | 0.604062 | tig0001526:-110105 | None:intergenic |
| ATACATAATACAGCAGGCCG+AGG | 0.605887 | tig0001526:+111756 | Msa1337450:CDS |
| GGACACATACATAATACAGC+AGG | 0.609180 | tig0001526:+111750 | Msa1337450:CDS |
| AATAAGAGAATTCAAGAACA+TGG | 0.612760 | tig0001526:+110745 | Msa1337450:CDS |
| GATGATTGGGCAACAAGAGG+CGG | 0.625561 | tig0001526:+110833 | Msa1337450:CDS |
| GCTGATGATTGGGCAACAAG+AGG | 0.626727 | tig0001526:+110830 | Msa1337450:CDS |
| CAGAACCAGAGGCTTTGTCG+AGG | 0.627145 | tig0001526:-110214 | None:intergenic |
| AGAACCAGAGGCTTTGTCGA+GGG | 0.631194 | tig0001526:-110213 | None:intergenic |
| TTCCAAAGAATCAACCAATG+AGG | 0.645428 | tig0001526:+110786 | Msa1337450:CDS |
| GGATTGAAATCCAGAACCAG+AGG | 0.649236 | tig0001526:-110225 | None:intergenic |
| AAGTCAACAAAGATTGAGTG+AGG | 0.654429 | tig0001526:+110964 | Msa1337450:CDS |
| CAGAACTTTGATATAACATG+GGG | 0.655512 | tig0001526:+110143 | Msa1337450:CDS |
| GGTCTGGTATAGCAGACCGC+GGG | 0.658733 | tig0001526:+111700 | Msa1337450:intron |
| ATACACCTTCAAATCAACCA+TGG | 0.690813 | tig0001526:+110028 | Msa1337450:exon |
| GCAATTATGAGTGTATGCCA+TGG | 0.758165 | tig0001526:-110045 | None:intergenic |
| CGTGCCAAGATACTCGACAA+CGG | 0.804801 | tig0001526:+110173 | Msa1337450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTAATTATTTTTACTATA+TGG | + | tig0001526:110418-110437 | Msa1337450:intron | 10.0% |
| !!! | CTTTTAAAAAAAAAATCAAT+TGG | + | tig0001526:110655-110674 | Msa1337450:intron | 10.0% |
| !! | ATGCAAAAAAAAAAAAAATA+CGG | + | tig0001526:111315-111334 | Msa1337450:intron | 10.0% |
| !!! | TGTTAATTATTTTTACTATA+TGG | + | tig0001526:110418-110437 | Msa1337450:intron | 10.0% |
| !!! | CTTTTAAAAAAAAAATCAAT+TGG | + | tig0001526:110655-110674 | Msa1337450:intron | 10.0% |
| !! | ATGCAAAAAAAAAAAAAATA+CGG | + | tig0001526:111315-111334 | Msa1337450:intron | 10.0% |
| !! | AATAATATATAAACATGTGA+CGG | + | tig0001526:110610-110629 | Msa1337450:intron | 15.0% |
| !! | GGAATATAGAATTATTAATT+AGG | - | tig0001526:111071-111090 | None:intergenic | 15.0% |
| !! | ACAAGTAAAATAAATTGAAT+AGG | - | tig0001526:111133-111152 | None:intergenic | 15.0% |
| !! | AATAATATATAAACATGTGA+CGG | + | tig0001526:110610-110629 | Msa1337450:intron | 15.0% |
| !! | GGAATATAGAATTATTAATT+AGG | - | tig0001526:111071-111090 | None:intergenic | 15.0% |
| !! | ACAAGTAAAATAAATTGAAT+AGG | - | tig0001526:111133-111152 | None:intergenic | 15.0% |
| !! | GTCACATGTTTATATATTAT+TGG | - | tig0001526:110611-110630 | None:intergenic | 20.0% |
| !! | TCATCAATAATCAATTCATT+GGG | - | tig0001526:110682-110701 | None:intergenic | 20.0% |
| !! | TTCATCAATAATCAATTCAT+TGG | - | tig0001526:110683-110702 | None:intergenic | 20.0% |
| !! | TTGTAGATTTATTCTTTCTT+AGG | + | tig0001526:111107-111126 | Msa1337450:intron | 20.0% |
| !!! | ATAAGAGTTAAGTTTTATTC+TGG | + | tig0001526:111360-111379 | Msa1337450:intron | 20.0% |
| !! | TTGCATTTACAATATTTAGT+AGG | + | tig0001526:111549-111568 | Msa1337450:intron | 20.0% |
| !!! | GTTTTTATGATATTTTGTGA+GGG | - | tig0001526:111616-111635 | None:intergenic | 20.0% |
| !! | GTCACATGTTTATATATTAT+TGG | - | tig0001526:110611-110630 | None:intergenic | 20.0% |
| !! | TCATCAATAATCAATTCATT+GGG | - | tig0001526:110682-110701 | None:intergenic | 20.0% |
| !! | TTCATCAATAATCAATTCAT+TGG | - | tig0001526:110683-110702 | None:intergenic | 20.0% |
| !! | TTGTAGATTTATTCTTTCTT+AGG | + | tig0001526:111107-111126 | Msa1337450:intron | 20.0% |
| !!! | ATAAGAGTTAAGTTTTATTC+TGG | + | tig0001526:111360-111379 | Msa1337450:intron | 20.0% |
| !! | TTGCATTTACAATATTTAGT+AGG | + | tig0001526:111549-111568 | Msa1337450:intron | 20.0% |
| !!! | GTTTTTATGATATTTTGTGA+GGG | - | tig0001526:111616-111635 | None:intergenic | 20.0% |
| ! | GTGTATGTATATATATAGCT+TGG | - | tig0001526:110014-110033 | None:intergenic | 25.0% |
| ! | ATCAGAACTTTGATATAACA+TGG | + | tig0001526:110141-110160 | Msa1337450:CDS | 25.0% |
| ! | TCAGAACTTTGATATAACAT+GGG | + | tig0001526:110142-110161 | Msa1337450:CDS | 25.0% |
| !! | TCCAAGAATGAATATCTTTT+TGG | + | tig0001526:110245-110264 | Msa1337450:CDS | 25.0% |
| ! | GAAAGTTCAAATTATACTGT+AGG | - | tig0001526:110376-110395 | None:intergenic | 25.0% |
| !! | GAAATTGACTTTGAATTCTT+GGG | + | tig0001526:110475-110494 | Msa1337450:CDS | 25.0% |
| !! | AAATTGACTTTGAATTCTTG+GGG | + | tig0001526:110476-110495 | Msa1337450:CDS | 25.0% |
| ! | ATGTTCTTGAATTCTCTTAT+TGG | - | tig0001526:110746-110765 | None:intergenic | 25.0% |
| ! | AATAAGAGAATTCAAGAACA+TGG | + | tig0001526:110745-110764 | Msa1337450:CDS | 25.0% |
| ! | TACAACTATATAGTTGCTAT+TGG | - | tig0001526:111092-111111 | None:intergenic | 25.0% |
| ! | TCAGCAAATTATATTAAGCT+TGG | - | tig0001526:111222-111241 | None:intergenic | 25.0% |
| ! | TTAAAATGTCAAGACCTATT+GGG | - | tig0001526:111293-111312 | None:intergenic | 25.0% |
| !! | TTTAAAATGTCAAGACCTAT+TGG | - | tig0001526:111294-111313 | None:intergenic | 25.0% |
| ! | CAAATTCAGTGATTATTACA+TGG | + | tig0001526:111504-111523 | Msa1337450:intron | 25.0% |
| !! | GGTTTTTATGATATTTTGTG+AGG | - | tig0001526:111617-111636 | None:intergenic | 25.0% |
| ! | AATATCATAAAAACCCAGTA+TGG | + | tig0001526:111622-111641 | Msa1337450:intron | 25.0% |
| ! | GTGTATGTATATATATAGCT+TGG | - | tig0001526:110014-110033 | None:intergenic | 25.0% |
| ! | ATCAGAACTTTGATATAACA+TGG | + | tig0001526:110141-110160 | Msa1337450:CDS | 25.0% |
| ! | TCAGAACTTTGATATAACAT+GGG | + | tig0001526:110142-110161 | Msa1337450:CDS | 25.0% |
| !! | TCCAAGAATGAATATCTTTT+TGG | + | tig0001526:110245-110264 | Msa1337450:CDS | 25.0% |
| ! | GAAAGTTCAAATTATACTGT+AGG | - | tig0001526:110376-110395 | None:intergenic | 25.0% |
| !! | GAAATTGACTTTGAATTCTT+GGG | + | tig0001526:110475-110494 | Msa1337450:CDS | 25.0% |
| !! | AAATTGACTTTGAATTCTTG+GGG | + | tig0001526:110476-110495 | Msa1337450:CDS | 25.0% |
| ! | ATGTTCTTGAATTCTCTTAT+TGG | - | tig0001526:110746-110765 | None:intergenic | 25.0% |
| ! | AATAAGAGAATTCAAGAACA+TGG | + | tig0001526:110745-110764 | Msa1337450:CDS | 25.0% |
| ! | TACAACTATATAGTTGCTAT+TGG | - | tig0001526:111092-111111 | None:intergenic | 25.0% |
| ! | TCAGCAAATTATATTAAGCT+TGG | - | tig0001526:111222-111241 | None:intergenic | 25.0% |
| ! | TTAAAATGTCAAGACCTATT+GGG | - | tig0001526:111293-111312 | None:intergenic | 25.0% |
| !! | TTTAAAATGTCAAGACCTAT+TGG | - | tig0001526:111294-111313 | None:intergenic | 25.0% |
| ! | CAAATTCAGTGATTATTACA+TGG | + | tig0001526:111504-111523 | Msa1337450:intron | 25.0% |
| !! | GGTTTTTATGATATTTTGTG+AGG | - | tig0001526:111617-111636 | None:intergenic | 25.0% |
| ! | AATATCATAAAAACCCAGTA+TGG | + | tig0001526:111622-111641 | Msa1337450:intron | 25.0% |
| CAAAAACCAATAGAGATAAG+AGG | - | tig0001526:110085-110104 | None:intergenic | 30.0% | |
| TGCATATGTTGTAATGAAAG+TGG | - | tig0001526:110108-110127 | None:intergenic | 30.0% | |
| CAGAACTTTGATATAACATG+GGG | + | tig0001526:110143-110162 | Msa1337450:CDS | 30.0% | |
| GCCAAAAAGATATTCATTCT+TGG | - | tig0001526:110249-110268 | None:intergenic | 30.0% | |
| ! | ATACTGTAGGATTAGCATTA+AGG | - | tig0001526:110363-110382 | None:intergenic | 30.0% |
| TGTCATCAAAAGGATCAAAT+TGG | + | tig0001526:110449-110468 | Msa1337450:CDS | 30.0% | |
| GTCATCAAAAGGATCAAATT+GGG | + | tig0001526:110450-110469 | Msa1337450:CDS | 30.0% | |
| ! | CGAAATTGACTTTGAATTCT+TGG | + | tig0001526:110474-110493 | Msa1337450:CDS | 30.0% |
| ! | TTTTCCTTGACTAAACACAT+TGG | - | tig0001526:110533-110552 | None:intergenic | 30.0% |
| AATGTGTTTAGTCAAGGAAA+AGG | + | tig0001526:110532-110551 | Msa1337450:CDS | 30.0% | |
| ! | AATTGAATGCAGTTTTTCTG+TGG | + | tig0001526:110712-110731 | Msa1337450:intron | 30.0% |
| TTCAAGAACATGGAATCAAA+AGG | + | tig0001526:110755-110774 | Msa1337450:CDS | 30.0% | |
| AAACTACTTCATCTAATGCA+TGG | + | tig0001526:110918-110937 | Msa1337450:CDS | 30.0% | |
| ! | ATATGTCAATTTTGCCCAAT+AGG | + | tig0001526:111276-111295 | Msa1337450:intron | 30.0% |
| !!! | CCGATTTTCTTTTTTGGTAA+GGG | - | tig0001526:111453-111472 | None:intergenic | 30.0% |
| CCCTTACCAAAAAAGAAAAT+CGG | + | tig0001526:111450-111469 | Msa1337450:intron | 30.0% | |
| !!! | TCCGATTTTCTTTTTTGGTA+AGG | - | tig0001526:111454-111473 | None:intergenic | 30.0% |
| ! | ACTGTTCCGATTTTCTTTTT+TGG | - | tig0001526:111459-111478 | None:intergenic | 30.0% |
| TCGCACTGTAAAAAAATGAA+AGG | + | tig0001526:111580-111599 | Msa1337450:intron | 30.0% | |
| CAAAAACCAATAGAGATAAG+AGG | - | tig0001526:110085-110104 | None:intergenic | 30.0% | |
| TGCATATGTTGTAATGAAAG+TGG | - | tig0001526:110108-110127 | None:intergenic | 30.0% | |
| CAGAACTTTGATATAACATG+GGG | + | tig0001526:110143-110162 | Msa1337450:CDS | 30.0% | |
| GCCAAAAAGATATTCATTCT+TGG | - | tig0001526:110249-110268 | None:intergenic | 30.0% | |
| ! | ATACTGTAGGATTAGCATTA+AGG | - | tig0001526:110363-110382 | None:intergenic | 30.0% |
| TGTCATCAAAAGGATCAAAT+TGG | + | tig0001526:110449-110468 | Msa1337450:CDS | 30.0% | |
| GTCATCAAAAGGATCAAATT+GGG | + | tig0001526:110450-110469 | Msa1337450:CDS | 30.0% | |
| ! | CGAAATTGACTTTGAATTCT+TGG | + | tig0001526:110474-110493 | Msa1337450:CDS | 30.0% |
| ! | TTTTCCTTGACTAAACACAT+TGG | - | tig0001526:110533-110552 | None:intergenic | 30.0% |
| AATGTGTTTAGTCAAGGAAA+AGG | + | tig0001526:110532-110551 | Msa1337450:CDS | 30.0% | |
| ! | AATTGAATGCAGTTTTTCTG+TGG | + | tig0001526:110712-110731 | Msa1337450:intron | 30.0% |
| TTCAAGAACATGGAATCAAA+AGG | + | tig0001526:110755-110774 | Msa1337450:CDS | 30.0% | |
| AAACTACTTCATCTAATGCA+TGG | + | tig0001526:110918-110937 | Msa1337450:CDS | 30.0% | |
| ! | ATATGTCAATTTTGCCCAAT+AGG | + | tig0001526:111276-111295 | Msa1337450:intron | 30.0% |
| !!! | CCGATTTTCTTTTTTGGTAA+GGG | - | tig0001526:111453-111472 | None:intergenic | 30.0% |
| CCCTTACCAAAAAAGAAAAT+CGG | + | tig0001526:111450-111469 | Msa1337450:intron | 30.0% | |
| !!! | TCCGATTTTCTTTTTTGGTA+AGG | - | tig0001526:111454-111473 | None:intergenic | 30.0% |
| ! | ACTGTTCCGATTTTCTTTTT+TGG | - | tig0001526:111459-111478 | None:intergenic | 30.0% |
| TCGCACTGTAAAAAAATGAA+AGG | + | tig0001526:111580-111599 | Msa1337450:intron | 30.0% | |
| ATACACCTTCAAATCAACCA+TGG | + | tig0001526:110028-110047 | Msa1337450:exon | 35.0% | |
| TTCATTACAACATATGCAGC+AGG | + | tig0001526:110110-110129 | Msa1337450:CDS | 35.0% | |
| TTTGATATAACATGGGGAGA+TGG | + | tig0001526:110149-110168 | Msa1337450:CDS | 35.0% | |
| TTCCAAAGAATCAACCAATG+AGG | + | tig0001526:110786-110805 | Msa1337450:CDS | 35.0% | |
| ! | ATCCTCATTGGTTGATTCTT+TGG | - | tig0001526:110791-110810 | None:intergenic | 35.0% |
| AGACTTGAGTATATCCTCAT+TGG | - | tig0001526:110803-110822 | None:intergenic | 35.0% | |
| TGAGGATATACTCAAGTCTA+TGG | + | tig0001526:110804-110823 | Msa1337450:CDS | 35.0% | |
| TCTATGGAATGCTGATGATT+GGG | + | tig0001526:110820-110839 | Msa1337450:CDS | 35.0% | |
| TTCCTATAAGATGCAGTGAA+TGG | - | tig0001526:110887-110906 | None:intergenic | 35.0% | |
| ! | ACTTGTTGAATCCAACTCTT+GGG | - | tig0001526:110948-110967 | None:intergenic | 35.0% |
| AAGTCAACAAAGATTGAGTG+AGG | + | tig0001526:110964-110983 | Msa1337450:CDS | 35.0% | |
| AGCTAGTCCCTCATAAAAAA+AGG | + | tig0001526:111407-111426 | Msa1337450:intron | 35.0% | |
| GCTAGTCCCTCATAAAAAAA+GGG | + | tig0001526:111408-111427 | Msa1337450:intron | 35.0% | |
| CTAGTCCCTCATAAAAAAAG+GGG | + | tig0001526:111409-111428 | Msa1337450:intron | 35.0% | |
| TAGTCCCTCATAAAAAAAGG+GGG | + | tig0001526:111410-111429 | Msa1337450:intron | 35.0% | |
| TAGTGAAACAAAGACCAGTT+TGG | + | tig0001526:111666-111685 | Msa1337450:intron | 35.0% | |
| ATACACCTTCAAATCAACCA+TGG | + | tig0001526:110028-110047 | Msa1337450:exon | 35.0% | |
| TTCATTACAACATATGCAGC+AGG | + | tig0001526:110110-110129 | Msa1337450:CDS | 35.0% | |
| TTTGATATAACATGGGGAGA+TGG | + | tig0001526:110149-110168 | Msa1337450:CDS | 35.0% | |
| TTCCAAAGAATCAACCAATG+AGG | + | tig0001526:110786-110805 | Msa1337450:CDS | 35.0% | |
| ! | ATCCTCATTGGTTGATTCTT+TGG | - | tig0001526:110791-110810 | None:intergenic | 35.0% |
| AGACTTGAGTATATCCTCAT+TGG | - | tig0001526:110803-110822 | None:intergenic | 35.0% | |
| TGAGGATATACTCAAGTCTA+TGG | + | tig0001526:110804-110823 | Msa1337450:CDS | 35.0% | |
| TCTATGGAATGCTGATGATT+GGG | + | tig0001526:110820-110839 | Msa1337450:CDS | 35.0% | |
| TTCCTATAAGATGCAGTGAA+TGG | - | tig0001526:110887-110906 | None:intergenic | 35.0% | |
| ! | ACTTGTTGAATCCAACTCTT+GGG | - | tig0001526:110948-110967 | None:intergenic | 35.0% |
| AAGTCAACAAAGATTGAGTG+AGG | + | tig0001526:110964-110983 | Msa1337450:CDS | 35.0% | |
| AGCTAGTCCCTCATAAAAAA+AGG | + | tig0001526:111407-111426 | Msa1337450:intron | 35.0% | |
| GCTAGTCCCTCATAAAAAAA+GGG | + | tig0001526:111408-111427 | Msa1337450:intron | 35.0% | |
| CTAGTCCCTCATAAAAAAAG+GGG | + | tig0001526:111409-111428 | Msa1337450:intron | 35.0% | |
| TAGTCCCTCATAAAAAAAGG+GGG | + | tig0001526:111410-111429 | Msa1337450:intron | 35.0% | |
| TAGTGAAACAAAGACCAGTT+TGG | + | tig0001526:111666-111685 | Msa1337450:intron | 35.0% | |
| !! | GTATGCCATGGTTGATTTGA+AGG | - | tig0001526:110036-110055 | None:intergenic | 40.0% |
| GCAATTATGAGTGTATGCCA+TGG | - | tig0001526:110048-110067 | None:intergenic | 40.0% | |
| CACTGTCCTCTTATCTCTAT+TGG | + | tig0001526:110076-110095 | Msa1337450:CDS | 40.0% | |
| ! | TGTAGGATTAGCATTAAGGC+AGG | - | tig0001526:110359-110378 | None:intergenic | 40.0% |
| GAATTCTTGGGGAATGTAAG+TGG | + | tig0001526:110487-110506 | Msa1337450:CDS | 40.0% | |
| ! | ACATTGGTGTGAAGAGTGTA+TGG | - | tig0001526:110517-110536 | None:intergenic | 40.0% |
| CACACCAATGTGTTTAGTCA+AGG | + | tig0001526:110526-110545 | Msa1337450:CDS | 40.0% | |
| GAGAGCAACAATTCCATCTT+TGG | + | tig0001526:110560-110579 | Msa1337450:CDS | 40.0% | |
| CAGTTGGATCAAACCAAAGA+TGG | - | tig0001526:110576-110595 | None:intergenic | 40.0% | |
| TTGGTGTGAAAATCAGCAGT+TGG | - | tig0001526:110592-110611 | None:intergenic | 40.0% | |
| ! | GAATGCAGTTTTTCTGTGGA+TGG | + | tig0001526:110716-110735 | Msa1337450:intron | 40.0% |
| GTCTATGGAATGCTGATGAT+TGG | + | tig0001526:110819-110838 | Msa1337450:CDS | 40.0% | |
| CTCCATTCACTGCATCTTAT+AGG | + | tig0001526:110882-110901 | Msa1337450:CDS | 40.0% | |
| !! | GACTTGTTGAATCCAACTCT+TGG | - | tig0001526:110949-110968 | None:intergenic | 40.0% |
| AGTCCCTCATAAAAAAAGGG+GGG | + | tig0001526:111411-111430 | Msa1337450:intron | 40.0% | |
| !!! | TTCCCCCCCTTTTTTTATGA+GGG | - | tig0001526:111417-111436 | None:intergenic | 40.0% |
| ! | CTTTGTTTCACTATCGAAGG+TGG | - | tig0001526:111659-111678 | None:intergenic | 40.0% |
| ! | GGTCTTTGTTTCACTATCGA+AGG | - | tig0001526:111662-111681 | None:intergenic | 40.0% |
| !! | ACCAGTTTGGTCTTAAAAGC+CGG | + | tig0001526:111679-111698 | Msa1337450:intron | 40.0% |
| GGACACATACATAATACAGC+AGG | + | tig0001526:111750-111769 | Msa1337450:CDS | 40.0% | |
| CAATTCTGTTGTCAGTTCCT+CGG | - | tig0001526:111776-111795 | None:intergenic | 40.0% | |
| !! | GTATGCCATGGTTGATTTGA+AGG | - | tig0001526:110036-110055 | None:intergenic | 40.0% |
| GCAATTATGAGTGTATGCCA+TGG | - | tig0001526:110048-110067 | None:intergenic | 40.0% | |
| CACTGTCCTCTTATCTCTAT+TGG | + | tig0001526:110076-110095 | Msa1337450:CDS | 40.0% | |
| ! | TGTAGGATTAGCATTAAGGC+AGG | - | tig0001526:110359-110378 | None:intergenic | 40.0% |
| GAATTCTTGGGGAATGTAAG+TGG | + | tig0001526:110487-110506 | Msa1337450:CDS | 40.0% | |
| ! | ACATTGGTGTGAAGAGTGTA+TGG | - | tig0001526:110517-110536 | None:intergenic | 40.0% |
| CACACCAATGTGTTTAGTCA+AGG | + | tig0001526:110526-110545 | Msa1337450:CDS | 40.0% | |
| GAGAGCAACAATTCCATCTT+TGG | + | tig0001526:110560-110579 | Msa1337450:CDS | 40.0% | |
| CAGTTGGATCAAACCAAAGA+TGG | - | tig0001526:110576-110595 | None:intergenic | 40.0% | |
| TTGGTGTGAAAATCAGCAGT+TGG | - | tig0001526:110592-110611 | None:intergenic | 40.0% | |
| ! | GAATGCAGTTTTTCTGTGGA+TGG | + | tig0001526:110716-110735 | Msa1337450:intron | 40.0% |
| GTCTATGGAATGCTGATGAT+TGG | + | tig0001526:110819-110838 | Msa1337450:CDS | 40.0% | |
| CTCCATTCACTGCATCTTAT+AGG | + | tig0001526:110882-110901 | Msa1337450:CDS | 40.0% | |
| !! | GACTTGTTGAATCCAACTCT+TGG | - | tig0001526:110949-110968 | None:intergenic | 40.0% |
| AGTCCCTCATAAAAAAAGGG+GGG | + | tig0001526:111411-111430 | Msa1337450:intron | 40.0% | |
| !!! | TTCCCCCCCTTTTTTTATGA+GGG | - | tig0001526:111417-111436 | None:intergenic | 40.0% |
| ! | CTTTGTTTCACTATCGAAGG+TGG | - | tig0001526:111659-111678 | None:intergenic | 40.0% |
| ! | GGTCTTTGTTTCACTATCGA+AGG | - | tig0001526:111662-111681 | None:intergenic | 40.0% |
| !! | ACCAGTTTGGTCTTAAAAGC+CGG | + | tig0001526:111679-111698 | Msa1337450:intron | 40.0% |
| GGACACATACATAATACAGC+AGG | + | tig0001526:111750-111769 | Msa1337450:CDS | 40.0% | |
| CAATTCTGTTGTCAGTTCCT+CGG | - | tig0001526:111776-111795 | None:intergenic | 40.0% | |
| TTGACCGTTGTCGAGTATCT+TGG | - | tig0001526:110180-110199 | None:intergenic | 45.0% | |
| GGATTGAAATCCAGAACCAG+AGG | - | tig0001526:110228-110247 | None:intergenic | 45.0% | |
| GGCATGCAGTTGTCATCAAA+AGG | + | tig0001526:110439-110458 | Msa1337450:intron | 45.0% | |
| ! | TGCATGGTTTTCCCAAGAGT+TGG | + | tig0001526:110934-110953 | Msa1337450:CDS | 45.0% |
| GACCTCAAAAGATTTCCCCA+AGG | + | tig0001526:111022-111041 | Msa1337450:intron | 45.0% | |
| ATGCAGTGCACTCTATTGGA+AGG | - | tig0001526:111048-111067 | None:intergenic | 45.0% | |
| TAGGATGCAGTGCACTCTAT+TGG | - | tig0001526:111052-111071 | None:intergenic | 45.0% | |
| GTCCCTCATAAAAAAAGGGG+GGG | + | tig0001526:111412-111431 | Msa1337450:intron | 45.0% | |
| !!! | GTTCCCCCCCTTTTTTTATG+AGG | - | tig0001526:111418-111437 | None:intergenic | 45.0% |
| CTATCGAAGGTGGATCAAGA+GGG | - | tig0001526:111649-111668 | None:intergenic | 45.0% | |
| ACTATCGAAGGTGGATCAAG+AGG | - | tig0001526:111650-111669 | None:intergenic | 45.0% | |
| !!! | ACCGGCTTTTAAGACCAAAC+TGG | - | tig0001526:111683-111702 | None:intergenic | 45.0% |
| !! | TTTGGTCTTAAAAGCCGGTC+TGG | + | tig0001526:111684-111703 | Msa1337450:intron | 45.0% |
| ATACATAATACAGCAGGCCG+AGG | + | tig0001526:111756-111775 | Msa1337450:CDS | 45.0% | |
| ACGTTACATTTCAGCTCAGC+CGG | - | tig0001526:111823-111842 | None:intergenic | 45.0% | |
| TTGACCGTTGTCGAGTATCT+TGG | - | tig0001526:110180-110199 | None:intergenic | 45.0% | |
| GGATTGAAATCCAGAACCAG+AGG | - | tig0001526:110228-110247 | None:intergenic | 45.0% | |
| GGCATGCAGTTGTCATCAAA+AGG | + | tig0001526:110439-110458 | Msa1337450:intron | 45.0% | |
| ! | TGCATGGTTTTCCCAAGAGT+TGG | + | tig0001526:110934-110953 | Msa1337450:CDS | 45.0% |
| GACCTCAAAAGATTTCCCCA+AGG | + | tig0001526:111022-111041 | Msa1337450:intron | 45.0% | |
| ATGCAGTGCACTCTATTGGA+AGG | - | tig0001526:111048-111067 | None:intergenic | 45.0% | |
| TAGGATGCAGTGCACTCTAT+TGG | - | tig0001526:111052-111071 | None:intergenic | 45.0% | |
| GTCCCTCATAAAAAAAGGGG+GGG | + | tig0001526:111412-111431 | Msa1337450:intron | 45.0% | |
| !!! | GTTCCCCCCCTTTTTTTATG+AGG | - | tig0001526:111418-111437 | None:intergenic | 45.0% |
| CTATCGAAGGTGGATCAAGA+GGG | - | tig0001526:111649-111668 | None:intergenic | 45.0% | |
| ACTATCGAAGGTGGATCAAG+AGG | - | tig0001526:111650-111669 | None:intergenic | 45.0% | |
| !!! | ACCGGCTTTTAAGACCAAAC+TGG | - | tig0001526:111683-111702 | None:intergenic | 45.0% |
| !! | TTTGGTCTTAAAAGCCGGTC+TGG | + | tig0001526:111684-111703 | Msa1337450:intron | 45.0% |
| ATACATAATACAGCAGGCCG+AGG | + | tig0001526:111756-111775 | Msa1337450:CDS | 45.0% | |
| ACGTTACATTTCAGCTCAGC+CGG | - | tig0001526:111823-111842 | None:intergenic | 45.0% | |
| CGTGCCAAGATACTCGACAA+CGG | + | tig0001526:110173-110192 | Msa1337450:CDS | 50.0% | |
| ! | AGAACCAGAGGCTTTGTCGA+GGG | - | tig0001526:110216-110235 | None:intergenic | 50.0% |
| ATGCAGCTCAAGCTTGTACC+TGG | + | tig0001526:110278-110297 | Msa1337450:CDS | 50.0% | |
| CTTGTACCTGGAAACTCTGC+AGG | + | tig0001526:110290-110309 | Msa1337450:CDS | 50.0% | |
| GCTGATGATTGGGCAACAAG+AGG | + | tig0001526:110830-110849 | Msa1337450:CDS | 50.0% | |
| GATGATTGGGCAACAAGAGG+CGG | + | tig0001526:110833-110852 | Msa1337450:CDS | 50.0% | |
| ! | GCGGTCTTGTCAAGACAGAT+TGG | + | tig0001526:110852-110871 | Msa1337450:CDS | 50.0% |
| ! | GGCCTTGGGGAAATCTTTTG+AGG | - | tig0001526:111027-111046 | None:intergenic | 50.0% |
| CACTCTATTGGAAGGCCTTG+GGG | - | tig0001526:111040-111059 | None:intergenic | 50.0% | |
| GCACTCTATTGGAAGGCCTT+GGG | - | tig0001526:111041-111060 | None:intergenic | 50.0% | |
| TGCACTCTATTGGAAGGCCT+TGG | - | tig0001526:111042-111061 | None:intergenic | 50.0% | |
| GGATCAAGAGGGACCATACT+GGG | - | tig0001526:111638-111657 | None:intergenic | 50.0% | |
| TGGATCAAGAGGGACCATAC+TGG | - | tig0001526:111639-111658 | None:intergenic | 50.0% | |
| ! | CGTGTGGACTAAACTTGTCC+CGG | + | tig0001526:111801-111820 | Msa1337450:CDS | 50.0% |
| CGTTACATTTCAGCTCAGCC+GGG | - | tig0001526:111822-111841 | None:intergenic | 50.0% | |
| CGTGCCAAGATACTCGACAA+CGG | + | tig0001526:110173-110192 | Msa1337450:CDS | 50.0% | |
| ! | AGAACCAGAGGCTTTGTCGA+GGG | - | tig0001526:110216-110235 | None:intergenic | 50.0% |
| ATGCAGCTCAAGCTTGTACC+TGG | + | tig0001526:110278-110297 | Msa1337450:CDS | 50.0% | |
| CTTGTACCTGGAAACTCTGC+AGG | + | tig0001526:110290-110309 | Msa1337450:CDS | 50.0% | |
| GCTGATGATTGGGCAACAAG+AGG | + | tig0001526:110830-110849 | Msa1337450:CDS | 50.0% | |
| GATGATTGGGCAACAAGAGG+CGG | + | tig0001526:110833-110852 | Msa1337450:CDS | 50.0% | |
| ! | GCGGTCTTGTCAAGACAGAT+TGG | + | tig0001526:110852-110871 | Msa1337450:CDS | 50.0% |
| ! | GGCCTTGGGGAAATCTTTTG+AGG | - | tig0001526:111027-111046 | None:intergenic | 50.0% |
| CACTCTATTGGAAGGCCTTG+GGG | - | tig0001526:111040-111059 | None:intergenic | 50.0% | |
| GCACTCTATTGGAAGGCCTT+GGG | - | tig0001526:111041-111060 | None:intergenic | 50.0% | |
| TGCACTCTATTGGAAGGCCT+TGG | - | tig0001526:111042-111061 | None:intergenic | 50.0% | |
| GGATCAAGAGGGACCATACT+GGG | - | tig0001526:111638-111657 | None:intergenic | 50.0% | |
| TGGATCAAGAGGGACCATAC+TGG | - | tig0001526:111639-111658 | None:intergenic | 50.0% | |
| ! | CGTGTGGACTAAACTTGTCC+CGG | + | tig0001526:111801-111820 | Msa1337450:CDS | 50.0% |
| CGTTACATTTCAGCTCAGCC+GGG | - | tig0001526:111822-111841 | None:intergenic | 50.0% | |
| CTTTCCCTCGACAAAGCCTC+TGG | + | tig0001526:110209-110228 | Msa1337450:CDS | 55.0% | |
| ! | CAGAACCAGAGGCTTTGTCG+AGG | - | tig0001526:110217-110236 | None:intergenic | 55.0% |
| ! | CTCGACAAAGCCTCTGGTTC+TGG | + | tig0001526:110215-110234 | Msa1337450:CDS | 55.0% |
| ACAGTGCCTGCAGAGTTTCC+AGG | - | tig0001526:110299-110318 | None:intergenic | 55.0% | |
| ! | CGCATTTTTCATGCTGCCCG+CGG | - | tig0001526:111719-111738 | None:intergenic | 55.0% |
| GAAAAATGCGCTGCAGCAGC+AGG | + | tig0001526:111729-111748 | Msa1337450:CDS | 55.0% | |
| CAACAGAATTGCAGCGCGTG+TGG | + | tig0001526:111785-111804 | Msa1337450:CDS | 55.0% | |
| CTTTCCCTCGACAAAGCCTC+TGG | + | tig0001526:110209-110228 | Msa1337450:CDS | 55.0% | |
| ! | CAGAACCAGAGGCTTTGTCG+AGG | - | tig0001526:110217-110236 | None:intergenic | 55.0% |
| ! | CTCGACAAAGCCTCTGGTTC+TGG | + | tig0001526:110215-110234 | Msa1337450:CDS | 55.0% |
| ACAGTGCCTGCAGAGTTTCC+AGG | - | tig0001526:110299-110318 | None:intergenic | 55.0% | |
| ! | CGCATTTTTCATGCTGCCCG+CGG | - | tig0001526:111719-111738 | None:intergenic | 55.0% |
| GAAAAATGCGCTGCAGCAGC+AGG | + | tig0001526:111729-111748 | Msa1337450:CDS | 55.0% | |
| CAACAGAATTGCAGCGCGTG+TGG | + | tig0001526:111785-111804 | Msa1337450:CDS | 55.0% | |
| CGCGGTCTGCTATACCAGAC+CGG | - | tig0001526:111701-111720 | None:intergenic | 60.0% | |
| CGGTCTGGTATAGCAGACCG+CGG | + | tig0001526:111699-111718 | Msa1337450:intron | 60.0% | |
| GGTCTGGTATAGCAGACCGC+GGG | + | tig0001526:111700-111719 | Msa1337450:intron | 60.0% | |
| CGCGGTCTGCTATACCAGAC+CGG | - | tig0001526:111701-111720 | None:intergenic | 60.0% | |
| CGGTCTGGTATAGCAGACCG+CGG | + | tig0001526:111699-111718 | Msa1337450:intron | 60.0% | |
| GGTCTGGTATAGCAGACCGC+GGG | + | tig0001526:111700-111719 | Msa1337450:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0001526 | gene | 109988 | 111867 | 109988 | ID=Msa1337450;Name=Msa1337450 |
| tig0001526 | mRNA | 109988 | 111867 | 109988 | ID=Msa1337450-mRNA-1;Parent=Msa1337450;Name=Msa1337450-mRNA-1;_AED=0.66;_eAED=0.66;_QI=59|0.33|0.25|0.75|1|1|4|0|277 |
| tig0001526 | exon | 109988 | 110331 | 109988 | ID=Msa1337450-mRNA-1:exon:1171;Parent=Msa1337450-mRNA-1 |
| tig0001526 | exon | 110448 | 110581 | 110448 | ID=Msa1337450-mRNA-1:exon:1172;Parent=Msa1337450-mRNA-1 |
| tig0001526 | exon | 110724 | 110985 | 110724 | ID=Msa1337450-mRNA-1:exon:1173;Parent=Msa1337450-mRNA-1 |
| tig0001526 | exon | 111715 | 111867 | 111715 | ID=Msa1337450-mRNA-1:exon:1174;Parent=Msa1337450-mRNA-1 |
| tig0001526 | five_prime_UTR | 109988 | 110046 | 109988 | ID=Msa1337450-mRNA-1:five_prime_utr;Parent=Msa1337450-mRNA-1 |
| tig0001526 | CDS | 110047 | 110331 | 110047 | ID=Msa1337450-mRNA-1:cds;Parent=Msa1337450-mRNA-1 |
| tig0001526 | CDS | 110448 | 110581 | 110448 | ID=Msa1337450-mRNA-1:cds;Parent=Msa1337450-mRNA-1 |
| tig0001526 | CDS | 110724 | 110985 | 110724 | ID=Msa1337450-mRNA-1:cds;Parent=Msa1337450-mRNA-1 |
| tig0001526 | CDS | 111715 | 111867 | 111715 | ID=Msa1337450-mRNA-1:cds;Parent=Msa1337450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
