Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641010 | XP_013455731.1 | 95.390 | 282 | 12 | 1 | 1 | 282 | 1 | 281 | 0.0 | 548 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641010 | A0A072UJ96 | 95.390 | 282 | 12 | 1 | 1 | 282 | 1 | 281 | 0.0 | 548 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0641010 | Msa1362840 | 0.824529 | 7.685143e-54 | -8.615850e-47 |
| Msa0257500 | Msa0641010 | 0.800204 | 1.608435e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641010 | MtrunA17_Chr4g0025511 | 95.390 | 282 | 12 | 1 | 1 | 282 | 1 | 281 | 0.0 | 548 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641010 | AT5G22120.1 | 52.157 | 255 | 107 | 6 | 29 | 282 | 143 | 383 | 4.73e-82 | 252 |
Find 70 sgRNAs with CRISPR-Local
Find 315 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTTTGCTGAGGTGGTTTC+AGG | 0.103251 | 4_3:+40645864 | None:intergenic |
| TTCCCCTTCCACGCCGCTTT+GGG | 0.188822 | 4_3:+40648290 | None:intergenic |
| CCGCTTTGGGGTTGGACTTT+TGG | 0.198425 | 4_3:+40648303 | None:intergenic |
| TGTAACAGCAACGTCGTAAT+TGG | 0.296832 | 4_3:+40650321 | None:intergenic |
| CTGCGATTTCCTTTCTCCAT+TGG | 0.304967 | 4_3:+40650382 | None:intergenic |
| GTAGTTAACGAAATAATTTA+AGG | 0.305070 | 4_3:-40645568 | Msa0641010:three_prime_UTR |
| GTTCATTTAATATGAGTATT+GGG | 0.319929 | 4_3:-40646939 | Msa0641010:CDS |
| CCCTCCCCGAGCCGCGTGAC+AGG | 0.328088 | 4_3:-40645782 | Msa0641010:CDS |
| GTTCCCCTTCCACGCCGCTT+TGG | 0.330904 | 4_3:+40648289 | None:intergenic |
| TGCGATTTCCTTTCTCCATT+GGG | 0.338693 | 4_3:+40650383 | None:intergenic |
| CTTCCACGCCGCTTTGGGGT+TGG | 0.348974 | 4_3:+40648295 | None:intergenic |
| GGGACCCTGTCACGCGGCTC+GGG | 0.349417 | 4_3:+40645777 | None:intergenic |
| GTTCGATTATTGATGATGTT+GGG | 0.365130 | 4_3:-40648219 | Msa0641010:CDS |
| AATAGATTCTATGCTTTGTC+TGG | 0.366516 | 4_3:-40645604 | Msa0641010:three_prime_UTR |
| TGTTCATTTAATATGAGTAT+TGG | 0.375587 | 4_3:-40646940 | Msa0641010:CDS |
| TATAGTGATCGGTTACTTGA+TGG | 0.383715 | 4_3:-40648241 | Msa0641010:CDS |
| CAGGGTCCCGAGAACATAAA+AGG | 0.392402 | 4_3:-40645763 | Msa0641010:CDS |
| GCTTTGTCTGGTAATTTGTA+AGG | 0.397566 | 4_3:-40645592 | Msa0641010:three_prime_UTR |
| CTCAGTTCAATTAAAGCAAA+TGG | 0.397843 | 4_3:-40646892 | Msa0641010:intron |
| CGGGACCCTGTCACGCGGCT+CGG | 0.401103 | 4_3:+40645776 | None:intergenic |
| TCAATAGAATCTTGTGAAGC+AGG | 0.424057 | 4_3:+40650283 | None:intergenic |
| GGTTCGATTATTGATGATGT+TGG | 0.430653 | 4_3:-40648220 | Msa0641010:CDS |
| ATAGAATCTATTGAATGTTA+TGG | 0.433806 | 4_3:+40645615 | None:intergenic |
| CAACCCCAAAGCGGCGTGGA+AGG | 0.449688 | 4_3:-40648294 | Msa0641010:CDS |
| CCCTGTCACGCGGCTCGGGG+AGG | 0.460253 | 4_3:+40645781 | None:intergenic |
| ACCCCAAAGCGGCGTGGAAG+GGG | 0.466974 | 4_3:-40648292 | Msa0641010:CDS |
| TGGACTCTTTCTTCACAACT+AGG | 0.470098 | 4_3:+40650341 | None:intergenic |
| AATTACCTTCTGCAGGAGTT+CGG | 0.480079 | 4_3:+40647761 | None:intergenic |
| CCTGTCACGCGGCTCGGGGA+GGG | 0.483074 | 4_3:+40645782 | None:intergenic |
| AAGTCTGTTGTTCTAGTGCT+TGG | 0.486163 | 4_3:+40647862 | None:intergenic |
| AAGATAAACTTTATAGTGAT+CGG | 0.492732 | 4_3:-40648252 | Msa0641010:CDS |
| AGAATCTTGTGAAGCAGGAT+TGG | 0.494273 | 4_3:+40650288 | None:intergenic |
| TAGTTAACGAAATAATTTAA+GGG | 0.496517 | 4_3:-40645567 | Msa0641010:three_prime_UTR |
| AGGAAATCGCAGTGAAGACT+TGG | 0.513959 | 4_3:-40650371 | Msa0641010:CDS |
| TCCCCTTCCACGCCGCTTTG+GGG | 0.517075 | 4_3:+40648291 | None:intergenic |
| AACCCCAAAGCGGCGTGGAA+GGG | 0.517415 | 4_3:-40648293 | Msa0641010:CDS |
| CCTCCCCGAGCCGCGTGACA+GGG | 0.518059 | 4_3:-40645781 | Msa0641010:CDS |
| ACGATGGGCACTAACTTGTC+AGG | 0.527220 | 4_3:+40648373 | None:intergenic |
| GGGTTCGATCTCAGAAGGAA+TGG | 0.530337 | 4_3:+40650403 | None:intergenic |
| AGATCGAACCCAATGGAGAA+AGG | 0.532519 | 4_3:-40650391 | Msa0641010:exon |
| AAAAGTTGAAAGATGAAGCA+TGG | 0.536060 | 4_3:-40645703 | Msa0641010:CDS |
| AGACAACAGAAGAACATGAT+TGG | 0.536931 | 4_3:+40647894 | None:intergenic |
| GGACCCTGTCACGCGGCTCG+GGG | 0.538389 | 4_3:+40645778 | None:intergenic |
| GGACTCTTTCTTCACAACTA+GGG | 0.542021 | 4_3:+40650342 | None:intergenic |
| AATGTTATGGATACAATGAA+TGG | 0.555301 | 4_3:+40645628 | None:intergenic |
| TCTTGTGAAGCAGGATTGGT+AGG | 0.565072 | 4_3:+40650292 | None:intergenic |
| AATTCTTCTTCTGCTGATGA+CGG | 0.565819 | 4_3:-40650259 | Msa0641010:intron |
| AAAGTTGAAAGATGAAGCAT+GGG | 0.566291 | 4_3:-40645702 | Msa0641010:CDS |
| CCATTGGGTTCGATCTCAGA+AGG | 0.568240 | 4_3:+40650398 | None:intergenic |
| ATAAAAGGCACGAAGATACA+AGG | 0.576376 | 4_3:-40645748 | Msa0641010:CDS |
| AAGCACTAGAACAACAGACT+TGG | 0.578002 | 4_3:-40647860 | Msa0641010:CDS |
| TTCGATTATTGATGATGTTG+GGG | 0.580377 | 4_3:-40648218 | Msa0641010:CDS |
| GAGGATGATTGCTAACAGCA+TGG | 0.596808 | 4_3:-40645816 | Msa0641010:CDS |
| GTATTCCGAACTCCTGCAGA+AGG | 0.603236 | 4_3:-40647766 | Msa0641010:intron |
| AGGATGATTGCTAACAGCAT+GGG | 0.607772 | 4_3:-40645815 | Msa0641010:CDS |
| CCTCTGTGCTGCTGTAGCCG+AGG | 0.626723 | 4_3:+40645835 | None:intergenic |
| CCTTCTGAGATCGAACCCAA+TGG | 0.628641 | 4_3:-40650398 | Msa0641010:exon |
| GAAAGTGAGAGTGTGTTGAC+CGG | 0.637741 | 4_3:-40650433 | Msa0641010:five_prime_UTR |
| GAAGCAGGATTGGTAGGTGA+TGG | 0.643557 | 4_3:+40650298 | None:intergenic |
| TAGAACAACAGACTTGGAGA+AGG | 0.647403 | 4_3:-40647854 | Msa0641010:CDS |
| TAAAATGTCTGAAGACACGA+TGG | 0.647729 | 4_3:+40648357 | None:intergenic |
| AGTCCAACCCCAAAGCGGCG+TGG | 0.660689 | 4_3:-40648298 | Msa0641010:CDS |
| CCAAAAGTCCAACCCCAAAG+CGG | 0.688632 | 4_3:-40648303 | Msa0641010:CDS |
| AAGGCACGAAGATACAAGGA+GGG | 0.706836 | 4_3:-40645744 | Msa0641010:CDS |
| AAAGGCACGAAGATACAAGG+AGG | 0.713389 | 4_3:-40645745 | Msa0641010:CDS |
| AAAATGTCTGAAGACACGAT+GGG | 0.717090 | 4_3:+40648358 | None:intergenic |
| GTTCTCGGGACCCTGTCACG+CGG | 0.733590 | 4_3:+40645771 | None:intergenic |
| CCTCGGCTACAGCAGCACAG+AGG | 0.740424 | 4_3:-40645835 | Msa0641010:CDS |
| GGGGACGAAGAAACTAATCG+TGG | 0.740827 | 4_3:-40648199 | Msa0641010:CDS |
| AAGTTGAAAGATGAAGCATG+GGG | 0.762760 | 4_3:-40645701 | Msa0641010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CGAAAAATATATATTTCAAT+TGG | - | chr4_3:40645994-40646013 | Msa0641010:intron | 15.0% |
| !! | AAAATATATATTTCAATTGG+AGG | - | chr4_3:40645997-40646016 | Msa0641010:intron | 15.0% |
| !!! | AAAGAAAAGAATATGATTTT+TGG | - | chr4_3:40646077-40646096 | Msa0641010:intron | 15.0% |
| !! | ACAGTAATCAAAATATTATT+GGG | + | chr4_3:40646356-40646375 | None:intergenic | 15.0% |
| !!! | AACACTTTTATTAAGAAAAT+AGG | - | chr4_3:40646713-40646732 | Msa0641010:intron | 15.0% |
| !!! | ACATTAGTTATTTTAAATGT+GGG | - | chr4_3:40647934-40647953 | Msa0641010:intron | 15.0% |
| !! | TATTTGTTTATGTATTATGA+TGG | - | chr4_3:40648315-40648334 | Msa0641010:CDS | 15.0% |
| !! | TTCTTAATGATGATAAATAT+GGG | + | chr4_3:40648552-40648571 | None:intergenic | 15.0% |
| !! | TAGTTAACGAAATAATTTAA+GGG | - | chr4_3:40650427-40650446 | Msa0641010:five_prime_UTR | 15.0% |
| !! | CACAGTAATCAAAATATTAT+TGG | + | chr4_3:40646357-40646376 | None:intergenic | 20.0% |
| !! | GATTAAGAATCAATTCTAAA+TGG | + | chr4_3:40646398-40646417 | None:intergenic | 20.0% |
| !! | ATAAGTTAGTTACAATAGTA+AGG | - | chr4_3:40646441-40646460 | Msa0641010:intron | 20.0% |
| !! | AAAAACATAAATCATTTACG+CGG | + | chr4_3:40647540-40647559 | None:intergenic | 20.0% |
| !! | AAGATAAACTTTATAGTGAT+CGG | - | chr4_3:40647742-40647761 | Msa0641010:intron | 20.0% |
| !! | TGAAAAGATTAAACATAACA+AGG | + | chr4_3:40647859-40647878 | None:intergenic | 20.0% |
| !! | GATACAATACTAAAAAACTA+TGG | + | chr4_3:40647914-40647933 | None:intergenic | 20.0% |
| !!! | CACATTAGTTATTTTAAATG+TGG | - | chr4_3:40647933-40647952 | Msa0641010:intron | 20.0% |
| !!! | TATATTTTGTTGAAAACACT+TGG | - | chr4_3:40648037-40648056 | Msa0641010:intron | 20.0% |
| !! | TCTTAATGATGATAAATATG+GGG | + | chr4_3:40648551-40648570 | None:intergenic | 20.0% |
| !! | GTTCTTAATGATGATAAATA+TGG | + | chr4_3:40648553-40648572 | None:intergenic | 20.0% |
| !! | TTTACCATTATATGTAGATT+AGG | - | chr4_3:40648655-40648674 | Msa0641010:intron | 20.0% |
| !! | ATTAGTCATTATCAGATTAA+TGG | + | chr4_3:40648983-40649002 | None:intergenic | 20.0% |
| !! | TGTTCATTTAATATGAGTAT+TGG | - | chr4_3:40649054-40649073 | Msa0641010:intron | 20.0% |
| !! | GTTCATTTAATATGAGTATT+GGG | - | chr4_3:40649055-40649074 | Msa0641010:intron | 20.0% |
| !! | TAATATAGCAGAAAGATAAA+GGG | + | chr4_3:40649136-40649155 | None:intergenic | 20.0% |
| !! | TTTATCTTTCTGCTATATTA+GGG | - | chr4_3:40649136-40649155 | Msa0641010:intron | 20.0% |
| !!! | TTTACTTAGATAATTTTGTG+TGG | - | chr4_3:40649646-40649665 | Msa0641010:intron | 20.0% |
| !!! | AGTTTTGAAATTCATCTTTA+AGG | - | chr4_3:40649941-40649960 | Msa0641010:intron | 20.0% |
| !! | ATAGAATCTATTGAATGTTA+TGG | + | chr4_3:40650382-40650401 | None:intergenic | 20.0% |
| !! | GTAGTTAACGAAATAATTTA+AGG | - | chr4_3:40650426-40650445 | Msa0641010:five_prime_UTR | 20.0% |
| !!! | GCTTTTTGTATTTCTGTTTA+AGG | - | chr4_3:40646227-40646246 | Msa0641010:intron | 25.0% |
| !! | TTTAAGGAAAGTTGATTACA+CGG | - | chr4_3:40646243-40646262 | Msa0641010:intron | 25.0% |
| ! | AGATAAAGAAAAGAAAACAC+AGG | - | chr4_3:40646654-40646673 | Msa0641010:intron | 25.0% |
| ! | GATAAAGAAAAGAAAACACA+GGG | - | chr4_3:40646655-40646674 | Msa0641010:intron | 25.0% |
| ! | TCTTAATCAACACAAATTCT+TGG | + | chr4_3:40646691-40646710 | None:intergenic | 25.0% |
| !!! | AAGTTATTAGTTAATGGGTT+TGG | + | chr4_3:40646876-40646895 | None:intergenic | 25.0% |
| ! | TAGGGAAGTTATTAGTTAAT+GGG | + | chr4_3:40646881-40646900 | None:intergenic | 25.0% |
| ! | TTAGGGAAGTTATTAGTTAA+TGG | + | chr4_3:40646882-40646901 | None:intergenic | 25.0% |
| ! | TGTGATATTTGCAGTATTAT+TGG | - | chr4_3:40646969-40646988 | Msa0641010:CDS | 25.0% |
| ! | AAGAAAATAAAAGACAGAAG+TGG | - | chr4_3:40647215-40647234 | Msa0641010:intron | 25.0% |
| ! | AGAAAATAAAAGACAGAAGT+GGG | - | chr4_3:40647216-40647235 | Msa0641010:intron | 25.0% |
| ! | AGATTGATTGATATTCATGA+CGG | - | chr4_3:40647403-40647422 | Msa0641010:intron | 25.0% |
| !!! | TTATAGCCTCATTTTGATAT+TGG | - | chr4_3:40647473-40647492 | Msa0641010:intron | 25.0% |
| ! | ACAAATCCAATATCAAAATG+AGG | + | chr4_3:40647482-40647501 | None:intergenic | 25.0% |
| !!! | ATTTGTTTTCTAGTTGTTCA+TGG | - | chr4_3:40647496-40647515 | Msa0641010:intron | 25.0% |
| ! | TATTGTGAAATATTGCAGAT+TGG | - | chr4_3:40647577-40647596 | Msa0641010:intron | 25.0% |
| ! | ATTGTGAAATATTGCAGATT+GGG | - | chr4_3:40647578-40647597 | Msa0641010:intron | 25.0% |
| !! | TGGAGTGTCAAAAATTAAAT+TGG | - | chr4_3:40647662-40647681 | Msa0641010:intron | 25.0% |
| ! | AGTGTCAAAAATTAAATTGG+AGG | - | chr4_3:40647665-40647684 | Msa0641010:intron | 25.0% |
| ! | AACATGAAAATTATGATCAG+GGG | + | chr4_3:40647989-40648008 | None:intergenic | 25.0% |
| ! | GAACATGAAAATTATGATCA+GGG | + | chr4_3:40647990-40648009 | None:intergenic | 25.0% |
| ! | TTTCATGTTCCAGTATAATT+AGG | - | chr4_3:40648000-40648019 | Msa0641010:intron | 25.0% |
| !!! | TTTTTCAACTCAGTACAATA+TGG | - | chr4_3:40648075-40648094 | Msa0641010:intron | 25.0% |
| !! | TTTTCAACTCAGTACAATAT+GGG | - | chr4_3:40648076-40648095 | Msa0641010:intron | 25.0% |
| !! | TCGAAAAGTATAAACTTTAG+AGG | + | chr4_3:40648358-40648377 | None:intergenic | 25.0% |
| ! | TGACAAACATGATATTATGA+TGG | - | chr4_3:40648380-40648399 | Msa0641010:CDS | 25.0% |
| ! | TCATCCTAATCTACATATAA+TGG | + | chr4_3:40648662-40648681 | None:intergenic | 25.0% |
| ! | TGCAATATATGCATATAGAA+TGG | + | chr4_3:40648852-40648871 | None:intergenic | 25.0% |
| ! | TCATCAACTTTATAATGAAC+CGG | - | chr4_3:40648955-40648974 | Msa0641010:intron | 25.0% |
| ! | GTGCTGCATTATAAAATTAA+TGG | + | chr4_3:40649011-40649030 | None:intergenic | 25.0% |
| ! | AATATAGCAGAAAGATAAAG+GGG | + | chr4_3:40649135-40649154 | None:intergenic | 25.0% |
| ! | CTAATATAGCAGAAAGATAA+AGG | + | chr4_3:40649137-40649156 | None:intergenic | 25.0% |
| ! | CTTTATCTTTCTGCTATATT+AGG | - | chr4_3:40649135-40649154 | Msa0641010:intron | 25.0% |
| ! | TTGCTCAAAATAAAGTTTCT+TGG | - | chr4_3:40649170-40649189 | Msa0641010:intron | 25.0% |
| ! | GTAGATAAAGAAAGAGAATT+GGG | + | chr4_3:40649327-40649346 | None:intergenic | 25.0% |
| ! | AGCAATAAAATCAAGTTTGA+GGG | + | chr4_3:40649811-40649830 | None:intergenic | 25.0% |
| ! | TAGCAATAAAATCAAGTTTG+AGG | + | chr4_3:40649812-40649831 | None:intergenic | 25.0% |
| ! | TTCAATTCAATGAGTGTATA+AGG | + | chr4_3:40650014-40650033 | None:intergenic | 25.0% |
| ! | AATGTTATGGATACAATGAA+TGG | + | chr4_3:40650369-40650388 | None:intergenic | 25.0% |
| !! | ATTTTTGGATGATGTTTGCT+CGG | - | chr4_3:40646092-40646111 | Msa0641010:intron | 30.0% |
| TGAAAGTGATGTAAGAGATT+TGG | - | chr4_3:40646121-40646140 | Msa0641010:intron | 30.0% | |
| TTGATTACTGTGTATCTGAA+TGG | - | chr4_3:40646365-40646384 | Msa0641010:intron | 30.0% | |
| !! | TACAATAGTAAGGTCTTGTT+TGG | - | chr4_3:40646451-40646470 | Msa0641010:intron | 30.0% |
| !! | TTAGTTAATGGGTTTGGTAA+AGG | + | chr4_3:40646870-40646889 | None:intergenic | 30.0% |
| TGATAAGGAGGAGTTATTTA+GGG | + | chr4_3:40646899-40646918 | None:intergenic | 30.0% | |
| TTGATAAGGAGGAGTTATTT+AGG | + | chr4_3:40646900-40646919 | None:intergenic | 30.0% | |
| ! | GTTTGTTAGGATAGTTGATA+AGG | + | chr4_3:40646914-40646933 | None:intergenic | 30.0% |
| CAGTATTATTGGATATTGAG+AGG | - | chr4_3:40646980-40646999 | Msa0641010:intron | 30.0% | |
| !! | TGTTATAGTCTCATTTTGAC+AGG | - | chr4_3:40647017-40647036 | Msa0641010:intron | 30.0% |
| !! | GTTATAGTCTCATTTTGACA+GGG | - | chr4_3:40647018-40647037 | Msa0641010:intron | 30.0% |
| !! | TTATAGTCTCATTTTGACAG+GGG | - | chr4_3:40647019-40647038 | Msa0641010:intron | 30.0% |
| GATTGATTGATATTCATGAC+GGG | - | chr4_3:40647404-40647423 | Msa0641010:intron | 30.0% | |
| TAGGATAATAGGTTATTGAG+AGG | - | chr4_3:40647434-40647453 | Msa0641010:intron | 30.0% | |
| !!! | TTTTCTAGTTGTTCATGGAT+AGG | - | chr4_3:40647501-40647520 | Msa0641010:intron | 30.0% |
| !! | GTTCGATTATTGATGATGTT+GGG | - | chr4_3:40647775-40647794 | Msa0641010:CDS | 30.0% |
| !! | TTCGATTATTGATGATGTTG+GGG | - | chr4_3:40647776-40647795 | Msa0641010:CDS | 30.0% |
| GGAACATGAAAATTATGATC+AGG | + | chr4_3:40647991-40648010 | None:intergenic | 30.0% | |
| CTGACAAAACCTAATTATAC+TGG | + | chr4_3:40648012-40648031 | None:intergenic | 30.0% | |
| ! | ATTGTGATTTTGTGATTCGT+TGG | - | chr4_3:40648181-40648200 | Msa0641010:CDS | 30.0% |
| ! | TTGTGATTTTGTGATTCGTT+GGG | - | chr4_3:40648182-40648201 | Msa0641010:CDS | 30.0% |
| ! | ATTTTGTAATTACCTTCTGC+AGG | + | chr4_3:40648243-40648262 | None:intergenic | 30.0% |
| ! | TGTATTATGATGGTGAGTTA+TGG | - | chr4_3:40648325-40648344 | Msa0641010:CDS | 30.0% |
| ACACTCTACATATATTGCAA+AGG | + | chr4_3:40648585-40648604 | None:intergenic | 30.0% | |
| AATATATGTAGAGTGTGTCA+TGG | - | chr4_3:40648589-40648608 | Msa0641010:intron | 30.0% | |
| GTATGTTTGTCTAGATAAAG+TGG | + | chr4_3:40648739-40648758 | None:intergenic | 30.0% | |
| ATGCATATATTGCATCTTGT+TGG | - | chr4_3:40648858-40648877 | Msa0641010:intron | 30.0% | |
| ! | ATTTTATAATGCAGCACTAG+AGG | - | chr4_3:40649014-40649033 | Msa0641010:intron | 30.0% |
| CTCAGTTCAATTAAAGCAAA+TGG | - | chr4_3:40649102-40649121 | Msa0641010:intron | 30.0% | |
| TGCTATATTAGGGTGATATA+AGG | - | chr4_3:40649146-40649165 | Msa0641010:intron | 30.0% | |
| ACATAGACTTCCTAAAGTAA+AGG | + | chr4_3:40649201-40649220 | None:intergenic | 30.0% | |
| ! | TACTTTAGGAAGTCTATGTA+TGG | - | chr4_3:40649202-40649221 | Msa0641010:intron | 30.0% |
| GGTAGATAAAGAAAGAGAAT+TGG | + | chr4_3:40649328-40649347 | None:intergenic | 30.0% | |
| TAATAAATGTCACTCATACC+TGG | - | chr4_3:40649521-40649540 | Msa0641010:intron | 30.0% | |
| TCAGTGTATCAATATACCTA+TGG | - | chr4_3:40649575-40649594 | Msa0641010:intron | 30.0% | |
| CGACACTAAAATTTGCATAT+TGG | - | chr4_3:40649607-40649626 | Msa0641010:intron | 30.0% | |
| ! | TGTGTTTAGACTTGATAACA+TGG | - | chr4_3:40649743-40649762 | Msa0641010:intron | 30.0% |
| TGCAAAATATCATAGATCTC+AGG | + | chr4_3:40649867-40649886 | None:intergenic | 30.0% | |
| ! | AAATTCATCTTTAAGGAGCT+GGG | - | chr4_3:40649948-40649967 | Msa0641010:intron | 30.0% |
| ! | TCAGAAGTGCAATAAACAAT+GGG | + | chr4_3:40650044-40650063 | None:intergenic | 30.0% |
| ! | TTCAGAAGTGCAATAAACAA+TGG | + | chr4_3:40650045-40650064 | None:intergenic | 30.0% |
| TCAGTTAATGTTATCTCACA+TGG | - | chr4_3:40650081-40650100 | Msa0641010:intron | 30.0% | |
| GTCTGAATAAACAATGAAAC+AGG | + | chr4_3:40650111-40650130 | None:intergenic | 30.0% | |
| AAAAGTTGAAAGATGAAGCA+TGG | - | chr4_3:40650291-40650310 | Msa0641010:CDS | 30.0% | |
| AAAGTTGAAAGATGAAGCAT+GGG | - | chr4_3:40650292-40650311 | Msa0641010:CDS | 30.0% | |
| AATAGATTCTATGCTTTGTC+TGG | - | chr4_3:40650390-40650409 | Msa0641010:exon | 30.0% | |
| TCAATAGAATCTTGTGAAGC+AGG | + | chr4_3:40645714-40645733 | None:intergenic | 35.0% | |
| AATTCTTCTTCTGCTGATGA+CGG | - | chr4_3:40645735-40645754 | Msa0641010:CDS | 35.0% | |
| ! | TACGAATCTAAGACCTAAAG+AGG | + | chr4_3:40645849-40645868 | None:intergenic | 35.0% |
| !!! | CGCTTTTTTGGGCTTTAATT+GGG | - | chr4_3:40645904-40645923 | Msa0641010:intron | 35.0% |
| GTGTAAAAGAATTGCCATGT+TGG | - | chr4_3:40646019-40646038 | Msa0641010:intron | 35.0% | |
| ! | TCTTTGTTTCTCGTTGCTAA+CGG | + | chr4_3:40646189-40646208 | None:intergenic | 35.0% |
| GAACGTGAAAACTGAAATGT+AGG | - | chr4_3:40646586-40646605 | Msa0641010:intron | 35.0% | |
| AACTGCTAGTTACTCCTATT+AGG | - | chr4_3:40646613-40646632 | Msa0641010:intron | 35.0% | |
| AACACACACAATCACCTAAT+AGG | + | chr4_3:40646630-40646649 | None:intergenic | 35.0% | |
| AAAGAAAACACAGGGAAGTT+AGG | - | chr4_3:40646663-40646682 | Msa0641010:intron | 35.0% | |
| TGAAGTTACTGAGTTAGAGA+AGG | + | chr4_3:40646830-40646849 | None:intergenic | 35.0% | |
| !! | TGTTAGGATAGTTGATAAGG+AGG | + | chr4_3:40646911-40646930 | None:intergenic | 35.0% |
| ! | TTGACAGGGGATTTGTATTT+TGG | - | chr4_3:40647032-40647051 | Msa0641010:intron | 35.0% |
| !!! | AATGAGTCATGGTTGCTTTT+TGG | - | chr4_3:40647064-40647083 | Msa0641010:intron | 35.0% |
| !!! | ATGAGTCATGGTTGCTTTTT+GGG | - | chr4_3:40647065-40647084 | Msa0641010:intron | 35.0% |
| ! | TTTGGGTGATGTTTGAGATT+TGG | - | chr4_3:40647082-40647101 | Msa0641010:intron | 35.0% |
| ATGATGTGTGTGAAGTTACT+AGG | - | chr4_3:40647169-40647188 | Msa0641010:intron | 35.0% | |
| AAATAAAAGACAGAAGTGGG+CGG | - | chr4_3:40647219-40647238 | Msa0641010:intron | 35.0% | |
| CAAATAAACACAGCATCTAG+TGG | + | chr4_3:40647378-40647397 | None:intergenic | 35.0% | |
| CATAAATCATTTACGCGGTT+AGG | + | chr4_3:40647535-40647554 | None:intergenic | 35.0% | |
| AAAATGTCTGAAGACACGAT+GGG | + | chr4_3:40647639-40647658 | None:intergenic | 35.0% | |
| TAAAATGTCTGAAGACACGA+TGG | + | chr4_3:40647640-40647659 | None:intergenic | 35.0% | |
| !! | GTGTCTTCAGACATTTTAAC+TGG | - | chr4_3:40647642-40647661 | Msa0641010:intron | 35.0% |
| TATAGTGATCGGTTACTTGA+TGG | - | chr4_3:40647753-40647772 | Msa0641010:intron | 35.0% | |
| !! | GGTTCGATTATTGATGATGT+TGG | - | chr4_3:40647774-40647793 | Msa0641010:CDS | 35.0% |
| AGACAACAGAAGAACATGAT+TGG | + | chr4_3:40648103-40648122 | None:intergenic | 35.0% | |
| AGCGGAAGATCTATATAAAC+AGG | + | chr4_3:40648447-40648466 | None:intergenic | 35.0% | |
| TAGTGTAAACCAGTTTGAAG+CGG | - | chr4_3:40648511-40648530 | Msa0641010:intron | 35.0% | |
| TATATTGCAAAGGCAAGAGA+CGG | + | chr4_3:40648575-40648594 | None:intergenic | 35.0% | |
| CTAGATAAAGTGGTTGTCAT+GGG | + | chr4_3:40648729-40648748 | None:intergenic | 35.0% | |
| TCTAGATAAAGTGGTTGTCA+TGG | + | chr4_3:40648730-40648749 | None:intergenic | 35.0% | |
| CATTATCAGATTAATGGCAC+CGG | + | chr4_3:40648977-40648996 | None:intergenic | 35.0% | |
| CATCGTAAAGAGCTTAAACA+AGG | + | chr4_3:40649228-40649247 | None:intergenic | 35.0% | |
| TTTGTGTGGTCTCGTATATA+TGG | - | chr4_3:40649660-40649679 | Msa0641010:intron | 35.0% | |
| TCTAGAAAGTCTCGAAATAC+AGG | + | chr4_3:40649774-40649793 | None:intergenic | 35.0% | |
| ! | GAAATTCATCTTTAAGGAGC+TGG | - | chr4_3:40649947-40649966 | Msa0641010:intron | 35.0% |
| ! | ATAAAAGGCACGAAGATACA+AGG | - | chr4_3:40650246-40650265 | Msa0641010:intron | 35.0% |
| AAGTTGAAAGATGAAGCATG+GGG | - | chr4_3:40650293-40650312 | Msa0641010:CDS | 35.0% | |
| ! | GCTTTGTCTGGTAATTTGTA+AGG | - | chr4_3:40650402-40650421 | Msa0641010:five_prime_UTR | 35.0% |
| !! | CAGAAGGAATGGATTTTCAC+CGG | + | chr4_3:40645583-40645602 | None:intergenic | 40.0% |
| TGCGATTTCCTTTCTCCATT+GGG | + | chr4_3:40645614-40645633 | None:intergenic | 40.0% | |
| GGACTCTTTCTTCACAACTA+GGG | + | chr4_3:40645655-40645674 | None:intergenic | 40.0% | |
| TGGACTCTTTCTTCACAACT+AGG | + | chr4_3:40645656-40645675 | None:intergenic | 40.0% | |
| TGTAACAGCAACGTCGTAAT+TGG | + | chr4_3:40645676-40645695 | None:intergenic | 40.0% | |
| AGAATCTTGTGAAGCAGGAT+TGG | + | chr4_3:40645709-40645728 | None:intergenic | 40.0% | |
| GTATCTCGAGGTGATATGTT+GGG | - | chr4_3:40645866-40645885 | Msa0641010:CDS | 40.0% | |
| !!! | TCTATACAGCGCGCTTTTTT+GGG | - | chr4_3:40645893-40645912 | Msa0641010:intron | 40.0% |
| !!! | GCGCTTTTTTGGGCTTTAAT+TGG | - | chr4_3:40645903-40645922 | Msa0641010:intron | 40.0% |
| CTTTAATTGGGCCTTTCTAG+TGG | - | chr4_3:40645916-40645935 | Msa0641010:intron | 40.0% | |
| AAGGACCAACTACTAATCCT+GGG | + | chr4_3:40645957-40645976 | None:intergenic | 40.0% | |
| !!! | TTGCCATGTTGGTTTTTACG+AGG | - | chr4_3:40646030-40646049 | Msa0641010:intron | 40.0% |
| !!! | TGCCATGTTGGTTTTTACGA+GGG | - | chr4_3:40646031-40646050 | Msa0641010:intron | 40.0% |
| ATCCCTCGTAAAAACCAACA+TGG | + | chr4_3:40646036-40646055 | None:intergenic | 40.0% | |
| TTATTGGGCCTGTAAACGAA+GGG | + | chr4_3:40646341-40646360 | None:intergenic | 40.0% | |
| ATTATTGGGCCTGTAAACGA+AGG | + | chr4_3:40646342-40646361 | None:intergenic | 40.0% | |
| TAGCGACTCTATTGCAAAAG+GGG | + | chr4_3:40646773-40646792 | None:intergenic | 40.0% | |
| GTAGCGACTCTATTGCAAAA+GGG | + | chr4_3:40646774-40646793 | None:intergenic | 40.0% | |
| AGTAGCGACTCTATTGCAAA+AGG | + | chr4_3:40646775-40646794 | None:intergenic | 40.0% | |
| ! | AGGCTAACAAGGAGTTTGTT+AGG | + | chr4_3:40646927-40646946 | None:intergenic | 40.0% |
| TAGCAGGATATAGGCTAACA+AGG | + | chr4_3:40646938-40646957 | None:intergenic | 40.0% | |
| TTCCTCGTTTAGCAGGATAT+AGG | + | chr4_3:40646947-40646966 | None:intergenic | 40.0% | |
| GGTTATTCGTGAATGAGTCA+TGG | - | chr4_3:40647053-40647072 | Msa0641010:intron | 40.0% | |
| GCAGAATGTGCATATATGGA+TGG | - | chr4_3:40647288-40647307 | Msa0641010:intron | 40.0% | |
| ! | ATATGGATGGCTTGTCACAA+AGG | - | chr4_3:40647301-40647320 | Msa0641010:intron | 40.0% |
| AGCAATCAAAGCAGAGATGA+GGG | - | chr4_3:40647327-40647346 | Msa0641010:intron | 40.0% | |
| !! | GTGGAAAGGATTTTGAAGAG+TGG | - | chr4_3:40647352-40647371 | Msa0641010:intron | 40.0% |
| ! | ATTCATGACGGGATAGTTGT+AGG | - | chr4_3:40647415-40647434 | Msa0641010:intron | 40.0% |
| CGGGATAGTTGTAGGATAAT+AGG | - | chr4_3:40647423-40647442 | Msa0641010:intron | 40.0% | |
| TTGTTCATGGATAGGCATGT+TGG | - | chr4_3:40647509-40647528 | Msa0641010:intron | 40.0% | |
| AAGTCTGTTGTTCTAGTGCT+TGG | + | chr4_3:40648135-40648154 | None:intergenic | 40.0% | |
| AAGCACTAGAACAACAGACT+TGG | - | chr4_3:40648134-40648153 | Msa0641010:intron | 40.0% | |
| TAGAACAACAGACTTGGAGA+AGG | - | chr4_3:40648140-40648159 | Msa0641010:intron | 40.0% | |
| ! | AGACTTGGAGAAGGTTTTTG+AGG | - | chr4_3:40648149-40648168 | Msa0641010:intron | 40.0% |
| AATTACCTTCTGCAGGAGTT+CGG | + | chr4_3:40648236-40648255 | None:intergenic | 40.0% | |
| TGTTCAAGAGAGAACTGAAG+CGG | + | chr4_3:40648465-40648484 | None:intergenic | 40.0% | |
| CTGGTTTACACTACATGCTT+TGG | + | chr4_3:40648504-40648523 | None:intergenic | 40.0% | |
| ! | AGTGTAAACCAGTTTGAAGC+GGG | - | chr4_3:40648512-40648531 | Msa0641010:intron | 40.0% |
| ! | GACATACTGTTACCCCTTTT+CGG | - | chr4_3:40648764-40648783 | Msa0641010:intron | 40.0% |
| ! | ACATACTGTTACCCCTTTTC+GGG | - | chr4_3:40648765-40648784 | Msa0641010:intron | 40.0% |
| CTTTCTTTATCTACCAGACG+CGG | - | chr4_3:40649333-40649352 | Msa0641010:intron | 40.0% | |
| !! | GTTGAACTCTGAAACTAGCA+GGG | + | chr4_3:40649407-40649426 | None:intergenic | 40.0% |
| !! | TGTTGAACTCTGAAACTAGC+AGG | + | chr4_3:40649408-40649427 | None:intergenic | 40.0% |
| GTGTGTCCACAACTTATCTA+CGG | - | chr4_3:40649461-40649480 | Msa0641010:intron | 40.0% | |
| !! | TTTTCGAGCACTATACAGTC+TGG | - | chr4_3:40649688-40649707 | Msa0641010:intron | 40.0% |
| AAGTTTGAGGGAACAAGCAA+GGG | + | chr4_3:40649799-40649818 | None:intergenic | 40.0% | |
| TCAGCAAAGACCAAAAACCT+CGG | - | chr4_3:40650142-40650161 | Msa0641010:intron | 40.0% | |
| AGGATGATTGCTAACAGCAT+GGG | - | chr4_3:40650179-40650198 | Msa0641010:intron | 40.0% | |
| ! | TTCGTGCCTTTTATGTTCTC+GGG | + | chr4_3:40650240-40650259 | None:intergenic | 40.0% |
| ! | CTTCGTGCCTTTTATGTTCT+CGG | + | chr4_3:40650241-40650260 | None:intergenic | 40.0% |
| ! | GAAAGTGAGAGTGTGTTGAC+CGG | - | chr4_3:40645561-40645580 | Msa0641010:three_prime_UTR | 45.0% |
| AGATCGAACCCAATGGAGAA+AGG | - | chr4_3:40645603-40645622 | Msa0641010:three_prime_UTR | 45.0% | |
| CTGCGATTTCCTTTCTCCAT+TGG | + | chr4_3:40645615-40645634 | None:intergenic | 45.0% | |
| AGGAAATCGCAGTGAAGACT+TGG | - | chr4_3:40645623-40645642 | Msa0641010:three_prime_UTR | 45.0% | |
| ! | TCTTGTGAAGCAGGATTGGT+AGG | + | chr4_3:40645705-40645724 | None:intergenic | 45.0% |
| TTATGTAGCAAACCCAGCGT+TGG | - | chr4_3:40645788-40645807 | Msa0641010:CDS | 45.0% | |
| ! | TTGGGAGTGTGTTCCTCTTT+AGG | - | chr4_3:40645833-40645852 | Msa0641010:CDS | 45.0% |
| GGTCTTAGATTCGTATCTCG+AGG | - | chr4_3:40645854-40645873 | Msa0641010:CDS | 45.0% | |
| CGTATCTCGAGGTGATATGT+TGG | - | chr4_3:40645865-40645884 | Msa0641010:CDS | 45.0% | |
| !!! | GTCTATACAGCGCGCTTTTT+TGG | - | chr4_3:40645892-40645911 | Msa0641010:intron | 45.0% |
| ! | AATTGGGCCTTTCTAGTGGT+CGG | - | chr4_3:40645920-40645939 | Msa0641010:intron | 45.0% |
| AGGACCAACTACTAATCCTG+GGG | + | chr4_3:40645956-40645975 | None:intergenic | 45.0% | |
| CAAGGACCAACTACTAATCC+TGG | + | chr4_3:40645958-40645977 | None:intergenic | 45.0% | |
| ! | GGATTAGTAGTTGGTCCTTG+AGG | - | chr4_3:40645958-40645977 | Msa0641010:intron | 45.0% |
| TTAGTAGTTGGTCCTTGAGG+TGG | - | chr4_3:40645961-40645980 | Msa0641010:intron | 45.0% | |
| TTTGGATGATGTTTGCTCGG+TGG | - | chr4_3:40646095-40646114 | Msa0641010:intron | 45.0% | |
| TTGGATGATGTTTGCTCGGT+GGG | - | chr4_3:40646096-40646115 | Msa0641010:intron | 45.0% | |
| ! | GGAAAGTTGATTACACGGTG+TGG | - | chr4_3:40646248-40646267 | Msa0641010:intron | 45.0% |
| ! | GAGATTCCGTGTTTGAAACC+GGG | + | chr4_3:40646283-40646302 | None:intergenic | 45.0% |
| ! | CGAGATTCCGTGTTTGAAAC+CGG | + | chr4_3:40646284-40646303 | None:intergenic | 45.0% |
| GTTTCAAACACGGAATCTCG+CGG | - | chr4_3:40646284-40646303 | Msa0641010:intron | 45.0% | |
| TATTGGGCCTGTAAACGAAG+GGG | + | chr4_3:40646340-40646359 | None:intergenic | 45.0% | |
| TGAGAGAAAACTCTCCTCCA+AGG | - | chr4_3:40646743-40646762 | Msa0641010:intron | 45.0% | |
| ATTGCAAAAGGGGCAATCCT+TGG | + | chr4_3:40646763-40646782 | None:intergenic | 45.0% | |
| AGCCTATATCCTGCTAAACG+AGG | - | chr4_3:40646942-40646961 | Msa0641010:CDS | 45.0% | |
| TCACACTTTCCTCGTTTAGC+AGG | + | chr4_3:40646954-40646973 | None:intergenic | 45.0% | |
| GGAAAACTGGGAGAAGTAGA+TGG | - | chr4_3:40647249-40647268 | Msa0641010:intron | 45.0% | |
| GCTGGCAGAATGTGCATATA+TGG | - | chr4_3:40647284-40647303 | Msa0641010:intron | 45.0% | |
| GAGCAATCAAAGCAGAGATG+AGG | - | chr4_3:40647326-40647345 | Msa0641010:intron | 45.0% | |
| ! | GTGTAAACCAGTTTGAAGCG+GGG | - | chr4_3:40648513-40648532 | Msa0641010:intron | 45.0% |
| ACTATAACCCCGCTTCAAAC+TGG | + | chr4_3:40648523-40648542 | None:intergenic | 45.0% | |
| GTGTGTCATGGTAGCTGATT+TGG | - | chr4_3:40648601-40648620 | Msa0641010:intron | 45.0% | |
| !! | CTTGGTGCTGCCTTTACTTT+AGG | - | chr4_3:40649188-40649207 | Msa0641010:intron | 45.0% |
| AAAAAGAAACATGCCGCGTC+TGG | + | chr4_3:40649349-40649368 | None:intergenic | 45.0% | |
| ACACACTGCCAATACATCGT+CGG | + | chr4_3:40649447-40649466 | None:intergenic | 45.0% | |
| ACCTGGTCGATACATGTTGA+TGG | - | chr4_3:40649538-40649557 | Msa0641010:intron | 45.0% | |
| CAAGTTTGAGGGAACAAGCA+AGG | + | chr4_3:40649800-40649819 | None:intergenic | 45.0% | |
| ! | GGGTATTTTGCGTACTGAAC+AGG | - | chr4_3:40649968-40649987 | Msa0641010:intron | 45.0% |
| !!! | GTTTTTGGTCTTTGCTGAGG+TGG | + | chr4_3:40650140-40650159 | None:intergenic | 45.0% |
| !!! | GAGGTTTTTGGTCTTTGCTG+AGG | + | chr4_3:40650143-40650162 | None:intergenic | 45.0% |
| GAGGATGATTGCTAACAGCA+TGG | - | chr4_3:40650178-40650197 | Msa0641010:intron | 45.0% | |
| ! | AAAGGCACGAAGATACAAGG+AGG | - | chr4_3:40650249-40650268 | Msa0641010:intron | 45.0% |
| AAGGCACGAAGATACAAGGA+GGG | - | chr4_3:40650250-40650269 | Msa0641010:intron | 45.0% | |
| GGGTTCGATCTCAGAAGGAA+TGG | + | chr4_3:40645594-40645613 | None:intergenic | 50.0% | |
| CCATTGGGTTCGATCTCAGA+AGG | + | chr4_3:40645599-40645618 | None:intergenic | 50.0% | |
| !! | CCTTCTGAGATCGAACCCAA+TGG | - | chr4_3:40645596-40645615 | Msa0641010:three_prime_UTR | 50.0% |
| ! | GAAGCAGGATTGGTAGGTGA+TGG | + | chr4_3:40645699-40645718 | None:intergenic | 50.0% |
| CTGGTGTAGGCTTGAGACTT+GGG | - | chr4_3:40645815-40645834 | Msa0641010:CDS | 50.0% | |
| AATCCCACCGACCACTAGAA+AGG | + | chr4_3:40645930-40645949 | None:intergenic | 50.0% | |
| ! | TTTCTAGTGGTCGGTGGGAT+TGG | - | chr4_3:40645929-40645948 | Msa0641010:intron | 50.0% |
| ! | TGGTCCCCAGGATTAGTAGT+TGG | - | chr4_3:40645949-40645968 | Msa0641010:intron | 50.0% |
| CGAAACTCGTATCCACCTCA+AGG | + | chr4_3:40645976-40645995 | None:intergenic | 50.0% | |
| CCTTCACCCGGTTTCAAACA+CGG | - | chr4_3:40646274-40646293 | Msa0641010:intron | 50.0% | |
| GTGTTTGCCCCTTCGTTTAC+AGG | - | chr4_3:40646330-40646349 | Msa0641010:intron | 50.0% | |
| GGCGGATCTGAAGGAAAACT+GGG | - | chr4_3:40647237-40647256 | Msa0641010:intron | 50.0% | |
| !!! | AGATGGCTGTTTTAGTGCGC+TGG | - | chr4_3:40647266-40647285 | Msa0641010:intron | 50.0% |
| CAAAGCAGAGATGAGGGTAG+TGG | - | chr4_3:40647333-40647352 | Msa0641010:intron | 50.0% | |
| !! | CAGAGATGAGGGTAGTGGAA+AGG | - | chr4_3:40647338-40647357 | Msa0641010:intron | 50.0% |
| ! | ACGATGGGCACTAACTTGTC+AGG | + | chr4_3:40647624-40647643 | None:intergenic | 50.0% |
| CCAAAAGTCCAACCCCAAAG+CGG | - | chr4_3:40647691-40647710 | Msa0641010:intron | 50.0% | |
| GGGGACGAAGAAACTAATCG+TGG | - | chr4_3:40647795-40647814 | Msa0641010:CDS | 50.0% | |
| GTATTCCGAACTCCTGCAGA+AGG | - | chr4_3:40648228-40648247 | Msa0641010:CDS | 50.0% | |
| !! | TGTTACCCCTTTTCGGGAAG+TGG | - | chr4_3:40648771-40648790 | Msa0641010:intron | 50.0% |
| !! | GTTACCCCTTTTCGGGAAGT+GGG | - | chr4_3:40648772-40648791 | Msa0641010:intron | 50.0% |
| TCCAACCCACTTCCCGAAAA+GGG | + | chr4_3:40648780-40648799 | None:intergenic | 50.0% | |
| ATCCAACCCACTTCCCGAAA+AGG | + | chr4_3:40648781-40648800 | None:intergenic | 50.0% | |
| GACACGCCGTAGATAAGTTG+TGG | + | chr4_3:40649470-40649489 | None:intergenic | 50.0% | |
| ! | GCCATCAACATGTATCGACC+AGG | + | chr4_3:40649542-40649561 | None:intergenic | 50.0% |
| AGTGTCGTATCGTCGTCCAT+AGG | + | chr4_3:40649594-40649613 | None:intergenic | 50.0% | |
| GTCTTTGCTGAGGTGGTTTC+AGG | + | chr4_3:40650133-40650152 | None:intergenic | 50.0% | |
| CAGGGTCCCGAGAACATAAA+AGG | - | chr4_3:40650231-40650250 | Msa0641010:intron | 50.0% | |
| GCTGGTGTAGGCTTGAGACT+TGG | - | chr4_3:40645814-40645833 | Msa0641010:CDS | 55.0% | |
| ! | CCGTGTTTGAAACCGGGTGA+AGG | + | chr4_3:40646277-40646296 | None:intergenic | 55.0% |
| GCAAAAGGGGCAATCCTTGG+AGG | + | chr4_3:40646760-40646779 | None:intergenic | 55.0% | |
| ACAGAAGTGGGCGGATCTGA+AGG | - | chr4_3:40647228-40647247 | Msa0641010:intron | 55.0% | |
| GGGCGGATCTGAAGGAAAAC+TGG | - | chr4_3:40647236-40647255 | Msa0641010:intron | 55.0% | |
| !!! | CCGCTTTGGGGTTGGACTTT+TGG | + | chr4_3:40647694-40647713 | None:intergenic | 55.0% |
| CCAACCCACTTCCCGAAAAG+GGG | + | chr4_3:40648779-40648798 | None:intergenic | 55.0% | |
| !! | GCAGAGTGCCGACGATGTAT+TGG | - | chr4_3:40649436-40649455 | Msa0641010:intron | 55.0% |
| ACTTATCTACGGCGTGTCGC+AGG | - | chr4_3:40649472-40649491 | Msa0641010:intron | 55.0% | |
| ! | GCTGCTGTAGCCGAGGTTTT+TGG | + | chr4_3:40650155-40650174 | None:intergenic | 55.0% |
| TACACCAGCACGCCAACGCT+GGG | + | chr4_3:40645803-40645822 | None:intergenic | 60.0% | |
| ! | TGGGCCTTTCTAGTGGTCGG+TGG | - | chr4_3:40645923-40645942 | Msa0641010:intron | 60.0% |
| ! | GGGCCTTTCTAGTGGTCGGT+GGG | - | chr4_3:40645924-40645943 | Msa0641010:intron | 60.0% |
| ACGGTGTGGACACCTTCACC+CGG | - | chr4_3:40646262-40646281 | Msa0641010:intron | 60.0% | |
| AACCCCAAAGCGGCGTGGAA+GGG | - | chr4_3:40647701-40647720 | Msa0641010:intron | 60.0% | |
| ! | TTCCCCTTCCACGCCGCTTT+GGG | + | chr4_3:40647707-40647726 | None:intergenic | 60.0% |
| !! | CCCCTTTTCGGGAAGTGGGT+TGG | - | chr4_3:40648776-40648795 | Msa0641010:intron | 60.0% |
| ACATCGTCGGCACTCTGCAG+AGG | + | chr4_3:40649434-40649453 | None:intergenic | 60.0% | |
| !! | CAAACCCAGCGTTGGCGTGC+TGG | - | chr4_3:40645796-40645815 | Msa0641010:CDS | 65.0% |
| CTACACCAGCACGCCAACGC+TGG | + | chr4_3:40645804-40645823 | None:intergenic | 65.0% | |
| !! | CAGCGTTGGCGTGCTGGTGT+AGG | - | chr4_3:40645802-40645821 | Msa0641010:CDS | 65.0% |
| AGTCCAACCCCAAAGCGGCG+TGG | - | chr4_3:40647696-40647715 | Msa0641010:intron | 65.0% | |
| !! | CTTCCACGCCGCTTTGGGGT+TGG | + | chr4_3:40647702-40647721 | None:intergenic | 65.0% |
| CAACCCCAAAGCGGCGTGGA+AGG | - | chr4_3:40647700-40647719 | Msa0641010:intron | 65.0% | |
| ACCCCAAAGCGGCGTGGAAG+GGG | - | chr4_3:40647702-40647721 | Msa0641010:intron | 65.0% | |
| ! | TCCCCTTCCACGCCGCTTTG+GGG | + | chr4_3:40647706-40647725 | None:intergenic | 65.0% |
| GTTCCCCTTCCACGCCGCTT+TGG | + | chr4_3:40647708-40647727 | None:intergenic | 65.0% | |
| TCGTCGGCACTCTGCAGAGG+CGG | + | chr4_3:40649431-40649450 | None:intergenic | 65.0% | |
| ACGGCGTGTCGCAGGCGTAT+TGG | - | chr4_3:40649480-40649499 | Msa0641010:intron | 65.0% | |
| ! | CCTCTGTGCTGCTGTAGCCG+AGG | + | chr4_3:40650162-40650181 | None:intergenic | 65.0% |
| CCTCGGCTACAGCAGCACAG+AGG | - | chr4_3:40650159-40650178 | Msa0641010:intron | 65.0% | |
| GTTCTCGGGACCCTGTCACG+CGG | + | chr4_3:40650226-40650245 | None:intergenic | 65.0% | |
| !! | GGTCGGTGGGATTGGTCCCC+AGG | - | chr4_3:40645937-40645956 | Msa0641010:intron | 70.0% |
| ! | CCTGTCACGCGGCTCGGGGA+GGG | + | chr4_3:40650215-40650234 | None:intergenic | 75.0% |
| CCTCCCCGAGCCGCGTGACA+GGG | - | chr4_3:40650213-40650232 | Msa0641010:intron | 75.0% | |
| GGACCCTGTCACGCGGCTCG+GGG | + | chr4_3:40650219-40650238 | None:intergenic | 75.0% | |
| GGGACCCTGTCACGCGGCTC+GGG | + | chr4_3:40650220-40650239 | None:intergenic | 75.0% | |
| CGGGACCCTGTCACGCGGCT+CGG | + | chr4_3:40650221-40650240 | None:intergenic | 75.0% | |
| ! | CCCTCCCCGAGCCGCGTGAC+AGG | - | chr4_3:40650212-40650231 | Msa0641010:intron | 80.0% |
| !! | CCCTGTCACGCGGCTCGGGG+AGG | + | chr4_3:40650216-40650235 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 40645550 | 40650466 | 40645550 | ID=Msa0641010;Name=Msa0641010 |
| chr4_3 | mRNA | 40645550 | 40650466 | 40645550 | ID=Msa0641010-mRNA-1;Parent=Msa0641010;Name=Msa0641010-mRNA-1;_AED=0.03;_eAED=0.03;_QI=65|1|1|1|1|1|5|141|282 |
| chr4_3 | exon | 40645550 | 40645887 | 40645550 | ID=Msa0641010-mRNA-1:exon:9160;Parent=Msa0641010-mRNA-1 |
| chr4_3 | exon | 40646893 | 40646988 | 40646893 | ID=Msa0641010-mRNA-1:exon:9159;Parent=Msa0641010-mRNA-1 |
| chr4_3 | exon | 40647767 | 40647928 | 40647767 | ID=Msa0641010-mRNA-1:exon:9158;Parent=Msa0641010-mRNA-1 |
| chr4_3 | exon | 40648170 | 40648421 | 40648170 | ID=Msa0641010-mRNA-1:exon:9157;Parent=Msa0641010-mRNA-1 |
| chr4_3 | exon | 40650260 | 40650466 | 40650260 | ID=Msa0641010-mRNA-1:exon:9156;Parent=Msa0641010-mRNA-1 |
| chr4_3 | five_prime_UTR | 40650402 | 40650466 | 40650402 | ID=Msa0641010-mRNA-1:five_prime_utr;Parent=Msa0641010-mRNA-1 |
| chr4_3 | CDS | 40650260 | 40650401 | 40650260 | ID=Msa0641010-mRNA-1:cds;Parent=Msa0641010-mRNA-1 |
| chr4_3 | CDS | 40648170 | 40648421 | 40648170 | ID=Msa0641010-mRNA-1:cds;Parent=Msa0641010-mRNA-1 |
| chr4_3 | CDS | 40647767 | 40647928 | 40647767 | ID=Msa0641010-mRNA-1:cds;Parent=Msa0641010-mRNA-1 |
| chr4_3 | CDS | 40646893 | 40646988 | 40646893 | ID=Msa0641010-mRNA-1:cds;Parent=Msa0641010-mRNA-1 |
| chr4_3 | CDS | 40645691 | 40645887 | 40645691 | ID=Msa0641010-mRNA-1:cds;Parent=Msa0641010-mRNA-1 |
| chr4_3 | three_prime_UTR | 40645550 | 40645690 | 40645550 | ID=Msa0641010-mRNA-1:three_prime_utr;Parent=Msa0641010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
