AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0257500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0257500 MtrunA17_Chr2g0319571 97.973 296 5 1 1 295 1 296 0.0 582
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0257500 AT4G27120.2 64.262 305 92 5 1 295 1 298 5.79e-97 288
Msa0257500 AT4G27120.1 64.262 305 92 5 1 295 1 298 5.79e-97 288
Msa0257500 AT4G27120.3 75.000 228 47 4 76 295 4 229 6.11e-86 257

Find 78 sgRNAs with CRISPR-Local

Find 403 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTATATATTCAACAAAAT+TGG 0.202421 2_2:-53465564 None:intergenic
GGTTTGATTTACTAGCTAAA+TGG 0.210956 2_2:-53468192 None:intergenic
TTCTGCAGCAAGATCTTCTA+AGG 0.265042 2_2:-53465787 None:intergenic
ATTGTTCTTCTTCGGTTTGC+AGG 0.293947 2_2:-53462517 None:intergenic
AATAAACCTTGTTGCGTTGC+AGG 0.302830 2_2:-53462892 None:intergenic
TCCTCAGCATAATGAGTCTT+TGG 0.336486 2_2:-53468232 None:intergenic
TACTTCCATCTGTCTGAAAC+TGG 0.338899 2_2:-53468568 None:intergenic
GGCCAAAGCATCAAAGAAAA+AGG 0.344496 2_2:+53463747 Msa0257500:CDS
CGGTTTCTATTGTTCTTCTT+CGG 0.362300 2_2:-53462525 None:intergenic
TTCCTCCGAAGAATCTCTTC+AGG 0.362853 2_2:+53462689 Msa0257500:CDS
CTTTGACTGCCGAGCTTCTT+CGG 0.373097 2_2:-53465256 None:intergenic
GGATGAAGAGCGTGAGGCGC+AGG 0.375726 2_2:+53465311 Msa0257500:CDS
TTTCGGGTGTCATGGATGAT+AGG 0.388749 2_2:+53468089 Msa0257500:CDS
GTTTGATTTACTAGCTAAAT+GGG 0.400098 2_2:-53468191 None:intergenic
TATCAATCGCATCACATCTC+TGG 0.405277 2_2:+53467618 Msa0257500:CDS
AATCAAAATATCTATCTTTG+CGG 0.413487 2_2:-53462545 None:intergenic
TTGGCTCTAAATCAATGAAC+TGG 0.430161 2_2:-53468213 None:intergenic
AGAGGAAGCCAAAGCTCAAA+AGG 0.449793 2_2:+53465430 Msa0257500:CDS
CGTCGGAGAACGGTTGCGTC+TGG 0.451265 2_2:+53462847 Msa0257500:CDS
CACTAATTCCACTCTACCTA+TGG 0.452049 2_2:+53462631 Msa0257500:CDS
AATCTTGTCTTGCTATGAAA+AGG 0.456615 2_2:-53468641 None:intergenic
GTAGCGGTGGCACGTGCAGC+AGG 0.458752 2_2:-53462814 None:intergenic
AGAAATAGAATGCACTGATC+TGG 0.464960 2_2:+53468337 Msa0257500:three_prime_UTR
AGGAACTCAAAAGGCAAGAG+AGG 0.466995 2_2:+53463767 Msa0257500:CDS
GCAAACCTGAAGAGATTCTT+CGG 0.475006 2_2:-53462694 None:intergenic
TTCAGAAATGCGGAGGTTGA+AGG 0.477745 2_2:+53465290 Msa0257500:CDS
CCGCTACTCGCCGCATGCGT+CGG 0.483491 2_2:+53462830 Msa0257500:CDS
TCGCCGCATGCGTCGGAGAA+CGG 0.485918 2_2:+53462837 Msa0257500:CDS
CGTGCAGCAGGTTCTCTGAC+TGG 0.487359 2_2:-53462802 None:intergenic
AGGTCGGCTTTCGGGTGTCA+TGG 0.491989 2_2:+53468081 Msa0257500:intron
AGCTCAAAAGGCTAGGGAAG+AGG 0.494792 2_2:+53465442 Msa0257500:CDS
TGAAACCAGTTTCAGACAGA+TGG 0.501893 2_2:+53468563 Msa0257500:three_prime_UTR
AAATTAATTGAGAAATTACA+TGG 0.504193 2_2:-53468541 None:intergenic
ACCTCCGCATTTCTGAATAA+CGG 0.508197 2_2:-53465284 None:intergenic
TTCGGGTGTCATGGATGATA+GGG 0.512596 2_2:+53468090 Msa0257500:CDS
CATCACATCTCTGGAAAGCA+TGG 0.517076 2_2:+53467627 Msa0257500:CDS
AATCGCGATGGCGTTTCCAT+AGG 0.517904 2_2:-53462647 None:intergenic
AAGCCAAAGCTCAAAAGGCT+AGG 0.524157 2_2:+53465435 Msa0257500:CDS
AAAATTCATTTACATCTCAC+AGG 0.525131 2_2:+53468114 Msa0257500:CDS
ATGAAATTGGAGTAATGCTA+AGG 0.533723 2_2:-53468393 None:intergenic
AGGTACACTTGAAGAGGAGC+AGG 0.538791 2_2:+53465520 Msa0257500:CDS
TGAGGCGCAGGAGCGTAAGT+TGG 0.547553 2_2:+53465323 Msa0257500:CDS
TTTGAAAGGCCGAAGAAGCT+CGG 0.559088 2_2:+53465247 Msa0257500:intron
AGCCAAAGCTCAAAAGGCTA+GGG 0.560451 2_2:+53465436 Msa0257500:CDS
CCGACGCATGCGGCGAGTAG+CGG 0.568591 2_2:-53462830 None:intergenic
TTTCTTTACATCATCAACGA+TGG 0.575763 2_2:+53462566 Msa0257500:exon
GCTCCGCCTGCAACGCAACA+AGG 0.578148 2_2:+53462886 Msa0257500:CDS
TTCGGAGGAAGATGAAGATG+AGG 0.579662 2_2:-53462676 None:intergenic
TTATATTAAGCGACAAGGGA+GGG 0.582545 2_2:+53468159 Msa0257500:CDS
ACGCATGCGGCGAGTAGCGG+TGG 0.584210 2_2:-53462827 None:intergenic
AGAGAGGGAAGCTCGACGGC+AGG 0.585418 2_2:+53463783 Msa0257500:CDS
GGCAAGAGAGGGAAGCTCGA+CGG 0.594227 2_2:+53463779 Msa0257500:CDS
TGATGAAGGTACACTTGAAG+AGG 0.595506 2_2:+53465514 Msa0257500:CDS
GGAACTCAAAAGGCAAGAGA+GGG 0.598128 2_2:+53463768 Msa0257500:CDS
TGCTGAGGACATTAGTAACA+TGG 0.604243 2_2:+53468246 Msa0257500:CDS
CAACCGTTCTCCGACGCATG+CGG 0.605145 2_2:-53462840 None:intergenic
TGGCGTTTCCATAGGTAGAG+TGG 0.606502 2_2:-53462639 None:intergenic
ACCGTTATTCAGAAATGCGG+AGG 0.609223 2_2:+53465283 Msa0257500:CDS
AGAATTTAAATTGCGCACAC+AGG 0.611949 2_2:+53465806 Msa0257500:CDS
TTAGAGTTTGACAAGTGGAA+AGG 0.613934 2_2:+53465476 Msa0257500:CDS
ATTATATTAAGCGACAAGGG+AGG 0.616619 2_2:+53468158 Msa0257500:CDS
GAAAGTGACAATGAAGCTGC+TGG 0.617304 2_2:+53463712 Msa0257500:CDS
ATCACATCTCTGGAAAGCAT+GGG 0.618886 2_2:+53467628 Msa0257500:CDS
TCTGCAGCAAGATCTTCTAA+GGG 0.619289 2_2:-53465786 None:intergenic
AAACCTTGTTGCGTTGCAGG+CGG 0.623759 2_2:-53462889 None:intergenic
CTGCGTTAGAGTTTGACAAG+TGG 0.625306 2_2:+53465471 Msa0257500:CDS
GAGATAACTGTCAACTGACA+TGG 0.625384 2_2:+53468271 Msa0257500:exon
CTGATTATATTAAGCGACAA+GGG 0.630907 2_2:+53468155 Msa0257500:CDS
CTGCAATGAGAAGTGTAGAG+AGG 0.643472 2_2:-53462608 None:intergenic
TCGGGTGTCATGGATGATAG+GGG 0.647827 2_2:+53468091 Msa0257500:CDS
GTTGAAGGATGAAGAGCGTG+AGG 0.648299 2_2:+53465305 Msa0257500:CDS
ATGAGGATTGAGAATCGCGA+TGG 0.648606 2_2:-53462659 None:intergenic
GCTGATTATATTAAGCGACA+AGG 0.652115 2_2:+53468154 Msa0257500:CDS
GCCAAAGACTCATTATGCTG+AGG 0.657399 2_2:+53468231 Msa0257500:CDS
AGCTGCTGGTGATGAGCATG+AGG 0.671214 2_2:+53463726 Msa0257500:CDS
AAGACCGTTATTCAGAAATG+CGG 0.686615 2_2:+53465280 Msa0257500:CDS
AACCTGAAGAGATTCTTCGG+AGG 0.717248 2_2:-53462691 None:intergenic
TGAGGACATTAGTAACATGG+AGG 0.752094 2_2:+53468249 Msa0257500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAATAATATTTTAGATAAA+GGG + chr2_2:53464303-53464322 Msa0257500:intron 10.0%
!!! AAATAATATTTTAGATAAAG+GGG + chr2_2:53464304-53464323 Msa0257500:intron 10.0%
!! ATAAATATTCTATAAACTTA+AGG - chr2_2:53467082-53467101 None:intergenic 10.0%
!! TTATAGAATATTTATATACA+AGG + chr2_2:53467087-53467106 Msa0257500:intron 10.0%
!!! AGTAATATATTTTTCATTTT+CGG + chr2_2:53467557-53467576 Msa0257500:intron 10.0%
!!! GATTTAATTTTATTTGTGTT+TGG + chr2_2:53462935-53462954 Msa0257500:intron 15.0%
!! TAATTGAATTAATTCTTGTT+TGG + chr2_2:53462999-53463018 Msa0257500:intron 15.0%
!!! AGACTTTTTTGAAAAATAAA+AGG + chr2_2:53464281-53464300 Msa0257500:intron 15.0%
!!! GGAAATAATATTTTAGATAA+AGG + chr2_2:53464302-53464321 Msa0257500:intron 15.0%
!!! AATAATATTTTAGATAAAGG+GGG + chr2_2:53464305-53464324 Msa0257500:intron 15.0%
!! CTTTATATATTCAACAAAAT+TGG - chr2_2:53465567-53465586 None:intergenic 15.0%
!!! CAATTTTGTTGAATATATAA+AGG + chr2_2:53465565-53465584 Msa0257500:CDS 15.0%
!! AATAGAATATAAAAAAGAAG+AGG - chr2_2:53465886-53465905 None:intergenic 15.0%
!! ATATAAATCATTAAACATAC+TGG - chr2_2:53465995-53466014 None:intergenic 15.0%
!!! TTTTATCTTACATTTTGTAA+TGG + chr2_2:53466425-53466444 Msa0257500:intron 15.0%
!!! GTAATATATTTTTCATTTTC+GGG + chr2_2:53467558-53467577 Msa0257500:intron 15.0%
!!! TAATATATTTTTCATTTTCG+GGG + chr2_2:53467559-53467578 Msa0257500:intron 15.0%
!!! TATATATTTCTTTTGATAGA+TGG - chr2_2:53467688-53467707 None:intergenic 15.0%
!! AAGAAATATTTGACATAATT+GGG + chr2_2:53467840-53467859 Msa0257500:intron 15.0%
!!! AATGATTTATTTATTTTGTC+AGG + chr2_2:53468061-53468080 Msa0257500:intron 15.0%
!!! ATACAGTAAATATATTTTTG+CGG - chr2_2:53468422-53468441 None:intergenic 15.0%
!! AAATTAATTGAGAAATTACA+TGG - chr2_2:53468544-53468563 None:intergenic 15.0%
!! AATCAAAATATCTATCTTTG+CGG - chr2_2:53462548-53462567 None:intergenic 20.0%
!!! GTTGTTTTTATAAGTTATCA+TGG + chr2_2:53463131-53463150 Msa0257500:intron 20.0%
!! ATAAAATTCCATTAATCAGA+TGG - chr2_2:53463301-53463320 None:intergenic 20.0%
!! TTAAATTTGACTAACCAAAA+TGG + chr2_2:53463949-53463968 Msa0257500:intron 20.0%
!!! ATAATATTTTAGATAAAGGG+GGG + chr2_2:53464306-53464325 Msa0257500:intron 20.0%
!! AGATAATACAAAGGATAATT+TGG + chr2_2:53464358-53464377 Msa0257500:intron 20.0%
!!! AATAGTTTAATTTTGTTCTC+AGG + chr2_2:53464715-53464734 Msa0257500:intron 20.0%
!! TCATCACTCATTATTAAAAA+TGG + chr2_2:53464738-53464757 Msa0257500:intron 20.0%
!! CATCACTCATTATTAAAAAT+GGG + chr2_2:53464739-53464758 Msa0257500:intron 20.0%
!! ATCAAATAACAAGTAAGAAA+AGG - chr2_2:53464899-53464918 None:intergenic 20.0%
!! AAAAGTTTATTTATGTCCAT+AGG + chr2_2:53465649-53465668 Msa0257500:intron 20.0%
!! AAAGTTTATTTATGTCCATA+GGG + chr2_2:53465650-53465669 Msa0257500:intron 20.0%
!! CAAACAATATAAAAAAGAAG+AGG - chr2_2:53465919-53465938 None:intergenic 20.0%
!! AAAAGAAGTTAGATATTAGT+GGG - chr2_2:53466298-53466317 None:intergenic 20.0%
!!! TTTTCCCAAACATTATTAAT+TGG + chr2_2:53466314-53466333 Msa0257500:intron 20.0%
!! ACTTCCAATTAATAATGTTT+GGG - chr2_2:53466321-53466340 None:intergenic 20.0%
!! AACTTCCAATTAATAATGTT+TGG - chr2_2:53466322-53466341 None:intergenic 20.0%
!! ATAATCAATTGTTTAATTCG+TGG + chr2_2:53466553-53466572 Msa0257500:intron 20.0%
!! TAATCAATTGTTTAATTCGT+GGG + chr2_2:53466554-53466573 Msa0257500:intron 20.0%
!! AGAAACAATATCTTAAAGTT+TGG + chr2_2:53467115-53467134 Msa0257500:intron 20.0%
!! GAAACAATATCTTAAAGTTT+GGG + chr2_2:53467116-53467135 Msa0257500:intron 20.0%
!!! TCGACTACTTTATAATTTTA+TGG + chr2_2:53467200-53467219 Msa0257500:intron 20.0%
!! TTACTTAGAAACATTAGAAA+AGG - chr2_2:53467472-53467491 None:intergenic 20.0%
!!! TTTCTAATGTTTCTAAGTAA+TGG + chr2_2:53467472-53467491 Msa0257500:intron 20.0%
!! TAGATGGTAATTTAAAAGAA+AGG - chr2_2:53467672-53467691 None:intergenic 20.0%
!! TATGATGAAAAATAAACCAA+GGG - chr2_2:53467717-53467736 None:intergenic 20.0%
!! TGATTGTATATGAATTCAAA+AGG - chr2_2:53467768-53467787 None:intergenic 20.0%
!! GAAGAAATATTTGACATAAT+TGG + chr2_2:53467839-53467858 Msa0257500:intron 20.0%
!!! ATTTATTTATTTTGTCAGGT+CGG + chr2_2:53468065-53468084 Msa0257500:intron 20.0%
!!! TACAGTAAATATATTTTTGC+GGG - chr2_2:53468421-53468440 None:intergenic 20.0%
!!! AGAAAGTTATTCCATATTTT+TGG + chr2_2:53468479-53468498 Msa0257500:three_prime_UTR 20.0%
! GTTAAAATGTGGTGAAATTA+GGG - chr2_2:53462736-53462755 None:intergenic 25.0%
! TGTTAAAATGTGGTGAAATT+AGG - chr2_2:53462737-53462756 None:intergenic 25.0%
!!! CGAGTTTTATTGTTAAAATG+TGG - chr2_2:53462747-53462766 None:intergenic 25.0%
! TTAATTGTGAATGAATCATC+AGG + chr2_2:53462777-53462796 Msa0257500:intron 25.0%
! ATAGTGAAATGGAAAAGAAA+AGG - chr2_2:53463488-53463507 None:intergenic 25.0%
! ACTTGAACAAAATAGTGAAA+TGG - chr2_2:53463499-53463518 None:intergenic 25.0%
!! ACTATTTTGTTCAAGTGTTT+AGG + chr2_2:53463503-53463522 Msa0257500:intron 25.0%
!! CTATTTTGTTCAAGTGTTTA+GGG + chr2_2:53463504-53463523 Msa0257500:intron 25.0%
! AAGATGTTATGTGTATATGA+AGG + chr2_2:53463989-53464008 Msa0257500:intron 25.0%
! GTGTATATGAAGGTTTAATA+AGG + chr2_2:53463999-53464018 Msa0257500:intron 25.0%
!!! TAATATTTTAGATAAAGGGG+GGG + chr2_2:53464307-53464326 Msa0257500:intron 25.0%
! AAGGTTAATTGGTTAAAAGA+AGG - chr2_2:53464447-53464466 None:intergenic 25.0%
!!! CAGATTTTGATTTATGAGAT+GGG - chr2_2:53464612-53464631 None:intergenic 25.0%
!!! ACAGATTTTGATTTATGAGA+TGG - chr2_2:53464613-53464632 None:intergenic 25.0%
! ATAACAGAACAATAAACAAG+TGG + chr2_2:53464660-53464679 Msa0257500:intron 25.0%
! TAACAGAACAATAAACAAGT+GGG + chr2_2:53464661-53464680 Msa0257500:intron 25.0%
! TAAACAACACTATATTGTTG+CGG + chr2_2:53464771-53464790 Msa0257500:intron 25.0%
! TATTGCATAAAATAGAGTCA+TGG - chr2_2:53464797-53464816 None:intergenic 25.0%
!!! CTTACTTGTTATTTGATTTC+TGG + chr2_2:53464902-53464921 Msa0257500:intron 25.0%
! ACTAACTAATCATTTAACCA+GGG - chr2_2:53465124-53465143 None:intergenic 25.0%
! AACTAACTAATCATTTAACC+AGG - chr2_2:53465125-53465144 None:intergenic 25.0%
!! TTTTGGTACTTCTTTTTGAA+AGG + chr2_2:53465233-53465252 Msa0257500:intron 25.0%
!! AAACTTTTGACAACTTATCA+AGG - chr2_2:53465637-53465656 None:intergenic 25.0%
! CTACTTACATATTTAGTTGT+AGG + chr2_2:53466045-53466064 Msa0257500:intron 25.0%
! AAAACAAGTGAAAAGACAAT+GGG + chr2_2:53466089-53466108 Msa0257500:intron 25.0%
!! TGTTTGTTAATATAAACCGA+AGG - chr2_2:53466201-53466220 None:intergenic 25.0%
! AAACATGACTAGTATTATAC+AGG + chr2_2:53466216-53466235 Msa0257500:intron 25.0%
! AACATGACTAGTATTATACA+GGG + chr2_2:53466217-53466236 Msa0257500:intron 25.0%
! GAAAAGAAGTTAGATATTAG+TGG - chr2_2:53466299-53466318 None:intergenic 25.0%
! TATCATCTATGTTGAACATT+TGG - chr2_2:53466464-53466483 None:intergenic 25.0%
!!! ATCTTGTAGACAAGTTTTAT+CGG + chr2_2:53466494-53466513 Msa0257500:intron 25.0%
!!! CTCTCGATTTTTAAAACATT+GGG - chr2_2:53466628-53466647 None:intergenic 25.0%
!!! ACTCTCGATTTTTAAAACAT+TGG - chr2_2:53466629-53466648 None:intergenic 25.0%
! AAGAAACAATCTCTTAAGTT+TGG + chr2_2:53467053-53467072 Msa0257500:intron 25.0%
! AGAAACAATCTCTTAAGTTT+GGG + chr2_2:53467054-53467073 Msa0257500:intron 25.0%
! CTATGATGAAAAATAAACCA+AGG - chr2_2:53467718-53467737 None:intergenic 25.0%
!!! TAAAACCTAGCTATTTTTGT+AGG - chr2_2:53467954-53467973 None:intergenic 25.0%
! AAAATTCATTTACATCTCAC+AGG + chr2_2:53468114-53468133 Msa0257500:CDS 25.0%
!! GTTTGATTTACTAGCTAAAT+GGG - chr2_2:53468194-53468213 None:intergenic 25.0%
!!! AACAATTTTAGCACTTTTGA+AGG + chr2_2:53468508-53468527 Msa0257500:three_prime_UTR 25.0%
TTTCTTTACATCATCAACGA+TGG + chr2_2:53462566-53462585 Msa0257500:exon 30.0%
!!! TGAAATTAGGGTTTTGGATT+GGG - chr2_2:53462724-53462743 None:intergenic 30.0%
!! TGATGGTGTTTTATGATTGA+TGG + chr2_2:53462965-53462984 Msa0257500:intron 30.0%
ATTCCATAAGCTCTTTCAAA+CGG + chr2_2:53463222-53463241 Msa0257500:intron 30.0%
AAATTCCATTAATCAGATGG+TGG - chr2_2:53463298-53463317 None:intergenic 30.0%
! TGTGTAGTTTTCTTCTTGAA+AGG + chr2_2:53463409-53463428 Msa0257500:intron 30.0%
! GTGTAGTTTTCTTCTTGAAA+GGG + chr2_2:53463410-53463429 Msa0257500:intron 30.0%
AAAATTGAACTGCTGTAGTT+TGG + chr2_2:53463445-53463464 Msa0257500:intron 30.0%
AAATTGAACTGCTGTAGTTT+GGG + chr2_2:53463446-53463465 Msa0257500:intron 30.0%
! AACTACTTGCCATTGTTATT+TGG + chr2_2:53463553-53463572 Msa0257500:intron 30.0%
TTAAACTAGTACTGCTTTGT+GGG + chr2_2:53463606-53463625 Msa0257500:intron 30.0%
! GTATACTTTTAAACAGAGTC+TGG + chr2_2:53463685-53463704 Msa0257500:intron 30.0%
! TTCCTTTTTCTTTGATGCTT+TGG - chr2_2:53463752-53463771 None:intergenic 30.0%
CAAAGAAAAAGGAACTCAAA+AGG + chr2_2:53463758-53463777 Msa0257500:CDS 30.0%
CACTAAGATATTCATTTGTC+TGG + chr2_2:53463875-53463894 Msa0257500:intron 30.0%
CAGACATGATATTCAGATAT+TGG + chr2_2:53464108-53464127 Msa0257500:intron 30.0%
! TAATTGTCCGATACAGTTTT+GGG - chr2_2:53464161-53464180 None:intergenic 30.0%
! TTAATTGTCCGATACAGTTT+TGG - chr2_2:53464162-53464181 None:intergenic 30.0%
TGTTAGCAGAGAAATTCTAT+AGG - chr2_2:53464185-53464204 None:intergenic 30.0%
TAGAGATAGAGAAGAGAAAA+GGG - chr2_2:53464416-53464435 None:intergenic 30.0%
TTAGAGATAGAGAAGAGAAA+AGG - chr2_2:53464417-53464436 None:intergenic 30.0%
TTCATTCTAGTGAAGATCTT+TGG - chr2_2:53464589-53464608 None:intergenic 30.0%
TAAACTATTGATGTCCTCAT+AGG - chr2_2:53464704-53464723 None:intergenic 30.0%
TCTCGGATTACTAAACAATA+GGG - chr2_2:53464820-53464839 None:intergenic 30.0%
AAGAAAAGGCAACAAATTGA+TGG - chr2_2:53464885-53464904 None:intergenic 30.0%
! CTAAGTGGTTGATTAGATTT+TGG + chr2_2:53465216-53465235 Msa0257500:intron 30.0%
CTTTCTTATGGTCTATTGAT+CGG + chr2_2:53465385-53465404 Msa0257500:intron 30.0%
!!! GAATTTTCAGTTGATGATGA+AGG + chr2_2:53465500-53465519 Msa0257500:CDS 30.0%
CAACTTATCAAGGCAAAATA+AGG - chr2_2:53465627-53465646 None:intergenic 30.0%
AACCTAATGGAAATTAGCTA+AGG + chr2_2:53465679-53465698 Msa0257500:intron 30.0%
ACCTAATGGAAATTAGCTAA+GGG + chr2_2:53465680-53465699 Msa0257500:intron 30.0%
! AGATTGGTCAATTCAGAAAA+AGG - chr2_2:53465850-53465869 None:intergenic 30.0%
AAAAAAGAAGAGGTGATAGA+GGG - chr2_2:53465876-53465895 None:intergenic 30.0%
TAAAAAAGAAGAGGTGATAG+AGG - chr2_2:53465877-53465896 None:intergenic 30.0%
AAAAAAGAAGAGGTGATAGA+GGG - chr2_2:53465876-53465895 None:intergenic 30.0%
TAAAAAAGAAGAGGTGATAG+AGG - chr2_2:53465877-53465896 None:intergenic 30.0%
GAAAACAAGTGAAAAGACAA+TGG + chr2_2:53466088-53466107 Msa0257500:intron 30.0%
AAAAGACAATGGGAAAACAA+AGG + chr2_2:53466099-53466118 Msa0257500:intron 30.0%
AAAGACAATGGGAAAACAAA+GGG + chr2_2:53466100-53466119 Msa0257500:intron 30.0%
ATTCCACTATTTACAGAGAT+TGG + chr2_2:53466145-53466164 Msa0257500:intron 30.0%
TAACCAATCTCTGTAAATAG+TGG - chr2_2:53466151-53466170 None:intergenic 30.0%
TAAAAACATTCAATGTCCTC+AGG - chr2_2:53466380-53466399 None:intergenic 30.0%
!! TACATTTTGTAATGGAAGCT+AGG + chr2_2:53466433-53466452 Msa0257500:intron 30.0%
!! ACATTTTGTAATGGAAGCTA+GGG + chr2_2:53466434-53466453 Msa0257500:intron 30.0%
!! TCTTGTAGACAAGTTTTATC+GGG + chr2_2:53466495-53466514 Msa0257500:intron 30.0%
ATCATATCACAGATTCTGAT+AGG + chr2_2:53466691-53466710 Msa0257500:intron 30.0%
TCATATCACAGATTCTGATA+GGG + chr2_2:53466692-53466711 Msa0257500:intron 30.0%
! AGTTGATATTCATAGAGATG+AGG + chr2_2:53466744-53466763 Msa0257500:intron 30.0%
GCATATTAGCAAATATACCT+AGG - chr2_2:53466968-53466987 None:intergenic 30.0%
ACATGCACAAAAATCTCTTA+AGG + chr2_2:53467026-53467045 Msa0257500:intron 30.0%
! TTAAAGTTTGGGATTACGTA+AGG + chr2_2:53467127-53467146 Msa0257500:intron 30.0%
AACCTGAACCATATTTCAAT+AGG + chr2_2:53467169-53467188 Msa0257500:intron 30.0%
ATCCTATTGAAATATGGTTC+AGG - chr2_2:53467174-53467193 None:intergenic 30.0%
GACATCATCCTATTGAAATA+TGG - chr2_2:53467180-53467199 None:intergenic 30.0%
TGGTTTATGATAGAACGTTA+TGG + chr2_2:53467366-53467385 Msa0257500:intron 30.0%
TAAAAGAAAGGATACACGAA+AGG - chr2_2:53467660-53467679 None:intergenic 30.0%
GAAATATATACACTTTCCCT+TGG + chr2_2:53467698-53467717 Msa0257500:intron 30.0%
ATGAATTCAAAAGGAGTAGA+TGG - chr2_2:53467759-53467778 None:intergenic 30.0%
AGTTTCCTACAAAAATAGCT+AGG + chr2_2:53467946-53467965 Msa0257500:intron 30.0%
!! GGTTTTATAGGTGTATCAAA+TGG + chr2_2:53467996-53468015 Msa0257500:intron 30.0%
!!! ATGGAAGTTTTTTCTCACTT+TGG + chr2_2:53468015-53468034 Msa0257500:intron 30.0%
!!! TGGAAGTTTTTTCTCACTTT+GGG + chr2_2:53468016-53468035 Msa0257500:intron 30.0%
CTGATTATATTAAGCGACAA+GGG + chr2_2:53468155-53468174 Msa0257500:CDS 30.0%
! GGTTTGATTTACTAGCTAAA+TGG - chr2_2:53468195-53468214 None:intergenic 30.0%
!!! GATCTGGTTTTATTAGGATA+TGG + chr2_2:53468353-53468372 Msa0257500:three_prime_UTR 30.0%
ATGAAATTGGAGTAATGCTA+AGG - chr2_2:53468396-53468415 None:intergenic 30.0%
! ATTTTTGCGGGAAATGAAAT+TGG - chr2_2:53468409-53468428 None:intergenic 30.0%
TTGTTGTGAAGCCAAAAATA+TGG - chr2_2:53468493-53468512 None:intergenic 30.0%
! AATCTTGTCTTGCTATGAAA+AGG - chr2_2:53468644-53468663 None:intergenic 30.0%
CGGTTTCTATTGTTCTTCTT+CGG - chr2_2:53462528-53462547 None:intergenic 35.0%
!!! GTGAAATTAGGGTTTTGGAT+TGG - chr2_2:53462725-53462744 None:intergenic 35.0%
! ATGTGGTGAAATTAGGGTTT+TGG - chr2_2:53462730-53462749 None:intergenic 35.0%
TTGTGTTTGGTATTGCATGA+TGG + chr2_2:53462948-53462967 Msa0257500:intron 35.0%
TTTCTTCTTGAAAGGGTTGA+CGG + chr2_2:53463417-53463436 Msa0257500:intron 35.0%
AATTGAACTGCTGTAGTTTG+GGG + chr2_2:53463447-53463466 Msa0257500:intron 35.0%
! TTTTGTTCAAGTGTTTAGGG+TGG + chr2_2:53463507-53463526 Msa0257500:intron 35.0%
! TTAGGGTGGATTTCATAATG+TGG + chr2_2:53463521-53463540 Msa0257500:intron 35.0%
AACAGAGAGCCAAATAACAA+TGG - chr2_2:53463565-53463584 None:intergenic 35.0%
!!! GCTCTCTGTTTTTTGTTATG+CGG + chr2_2:53463575-53463594 Msa0257500:intron 35.0%
GTTAAACTAGTACTGCTTTG+TGG + chr2_2:53463605-53463624 Msa0257500:intron 35.0%
CTTTGTGGGAATAATGTTCA+TGG + chr2_2:53463620-53463639 Msa0257500:intron 35.0%
ATCATTATGCTCTTAGACAC+AGG - chr2_2:53463929-53463948 None:intergenic 35.0%
! TTTCGAGAAACTCTCCATTT+TGG - chr2_2:53463966-53463985 None:intergenic 35.0%
CACATGATAGGATTACTTTG+AGG + chr2_2:53464076-53464095 Msa0257500:intron 35.0%
ACATCATCCCAAAACTGTAT+CGG + chr2_2:53464151-53464170 Msa0257500:intron 35.0%
AACAACCAGTTAAAACCTGA+AGG + chr2_2:53464201-53464220 Msa0257500:intron 35.0%
ATGACACTCTCAAGGTTAAT+TGG - chr2_2:53464458-53464477 None:intergenic 35.0%
! TTTTGTACACAACAGAGCAA+AGG + chr2_2:53464632-53464651 Msa0257500:intron 35.0%
GTCTCGGATTACTAAACAAT+AGG - chr2_2:53464821-53464840 None:intergenic 35.0%
! TCTTAAACTAGTGTTTTCCC+TGG + chr2_2:53465104-53465123 Msa0257500:intron 35.0%
! GTTGTTGATTGAAGTCTAAG+TGG + chr2_2:53465201-53465220 Msa0257500:intron 35.0%
AAGACCGTTATTCAGAAATG+CGG + chr2_2:53465280-53465299 Msa0257500:CDS 35.0%
!! TCTCAGGATTAGCTTTCTTA+TGG + chr2_2:53465373-53465392 Msa0257500:intron 35.0%
TTAGAGTTTGACAAGTGGAA+AGG + chr2_2:53465476-53465495 Msa0257500:CDS 35.0%
ACCCTTAGCTAATTTCCATT+AGG - chr2_2:53465684-53465703 None:intergenic 35.0%
GGTTATAATTGTAACCGTGT+GGG + chr2_2:53465701-53465720 Msa0257500:intron 35.0%
GTTATAATTGTAACCGTGTG+GGG + chr2_2:53465702-53465721 Msa0257500:intron 35.0%
TTATAATTGTAACCGTGTGG+GGG + chr2_2:53465703-53465722 Msa0257500:intron 35.0%
AGAATTTAAATTGCGCACAC+AGG + chr2_2:53465806-53465825 Msa0257500:CDS 35.0%
! TGTTTGTTGCTGTTAGTTTG+TGG + chr2_2:53465933-53465952 Msa0257500:intron 35.0%
!! GTTTGTTGCTGTTAGTTTGT+GGG + chr2_2:53465934-53465953 Msa0257500:intron 35.0%
!!! GTAGGAATTTTTAGCAGTGT+TGG + chr2_2:53466063-53466082 Msa0257500:intron 35.0%
AACAAAGGGTGATGTAATAG+AGG + chr2_2:53466114-53466133 Msa0257500:intron 35.0%
TCTTATACTCCATAAGCCAT+CGG + chr2_2:53466242-53466261 Msa0257500:intron 35.0%
GAAGTTAGATATTAGTGGGA+TGG - chr2_2:53466294-53466313 None:intergenic 35.0%
!! CTTGTAGACAAGTTTTATCG+GGG + chr2_2:53466496-53466515 Msa0257500:intron 35.0%
TCTTGTGATTCTCAATTGCA+TGG + chr2_2:53466801-53466820 Msa0257500:intron 35.0%
GATTCAGTTAAACTAAGCCT+AGG + chr2_2:53466948-53466967 Msa0257500:intron 35.0%
! TTTTATGGCGTTAACATGAC+TGG + chr2_2:53467215-53467234 Msa0257500:intron 35.0%
!! GTTTCGACTGGGTTTTATAT+TGG + chr2_2:53467256-53467275 Msa0257500:intron 35.0%
ATGCATAATGAGGCTATCAT+AGG + chr2_2:53467330-53467349 Msa0257500:intron 35.0%
ATAATGAGGCTATCATAGGA+AGG + chr2_2:53467334-53467353 Msa0257500:intron 35.0%
! TCATAGGAAGGATTAGCATA+TGG + chr2_2:53467346-53467365 Msa0257500:intron 35.0%
TGTTCTTGAAACTGACTGAT+CGG + chr2_2:53467444-53467463 Msa0257500:intron 35.0%
! AAGTAATGGAGCCCTATTTA+CGG + chr2_2:53467486-53467505 Msa0257500:intron 35.0%
ATGACACTGTAAACTTATGC+AGG + chr2_2:53467591-53467610 Msa0257500:intron 35.0%
TCAAAAGGAGTAGATGGTAA+TGG - chr2_2:53467753-53467772 None:intergenic 35.0%
ACATGGCATCTAATCTAACA+TGG - chr2_2:53467796-53467815 None:intergenic 35.0%
TACCCTATTGTTGCAAGTTA+TGG + chr2_2:53467892-53467911 Msa0257500:intron 35.0%
ACCCTATTGTTGCAAGTTAT+GGG + chr2_2:53467893-53467912 Msa0257500:intron 35.0%
!! AGCATGTACGTAGGTTTTAT+AGG + chr2_2:53467984-53468003 Msa0257500:intron 35.0%
GCTGATTATATTAAGCGACA+AGG + chr2_2:53468154-53468173 Msa0257500:CDS 35.0%
ATTATATTAAGCGACAAGGG+AGG + chr2_2:53468158-53468177 Msa0257500:CDS 35.0%
TTATATTAAGCGACAAGGGA+GGG + chr2_2:53468159-53468178 Msa0257500:CDS 35.0%
!! TTGGCTCTAAATCAATGAAC+TGG - chr2_2:53468216-53468235 None:intergenic 35.0%
!!! TGTCAACTGACATGGTTTTT+TGG + chr2_2:53468279-53468298 Msa0257500:exon 35.0%
! AGAAATAGAATGCACTGATC+TGG + chr2_2:53468337-53468356 Msa0257500:three_prime_UTR 35.0%
!!! TGCACTGATCTGGTTTTATT+AGG + chr2_2:53468347-53468366 Msa0257500:three_prime_UTR 35.0%
! ATTGTTCTTCTTCGGTTTGC+AGG - chr2_2:53462520-53462539 None:intergenic 40.0%
CACTAATTCCACTCTACCTA+TGG + chr2_2:53462631-53462650 Msa0257500:CDS 40.0%
GCAAACCTGAAGAGATTCTT+CGG - chr2_2:53462697-53462716 None:intergenic 40.0%
AATAAACCTTGTTGCGTTGC+AGG - chr2_2:53462895-53462914 None:intergenic 40.0%
TCAACTTATACGAGCTCTCA+AGG - chr2_2:53463203-53463222 None:intergenic 40.0%
AGACCGTTTGAAAGAGCTTA+TGG - chr2_2:53463228-53463247 None:intergenic 40.0%
! TTCCATTAATCAGATGGTGG+TGG - chr2_2:53463295-53463314 None:intergenic 40.0%
TCAACACACGTTCACGTTAA+AGG + chr2_2:53463358-53463377 Msa0257500:intron 40.0%
ATTGAACTGCTGTAGTTTGG+GGG + chr2_2:53463448-53463467 Msa0257500:intron 40.0%
! GGCCAAAGCATCAAAGAAAA+AGG + chr2_2:53463747-53463766 Msa0257500:CDS 40.0%
AAATGAACCAGTTTGCAACG+TGG - chr2_2:53463824-53463843 None:intergenic 40.0%
CAAACTGTCATGCACATGAT+AGG + chr2_2:53464064-53464083 Msa0257500:intron 40.0%
!! CAGTTCCTTCAGGTTTTAAC+TGG - chr2_2:53464209-53464228 None:intergenic 40.0%
CAGTTAAAACCTGAAGGAAC+TGG + chr2_2:53464207-53464226 Msa0257500:intron 40.0%
TGGTCATGACCTGGTAAATA+CGG + chr2_2:53464227-53464246 Msa0257500:intron 40.0%
AATACGGACATTCACCTGTT+TGG + chr2_2:53464243-53464262 Msa0257500:intron 40.0%
AACATCAAACCGTTCCAAAC+AGG - chr2_2:53464260-53464279 None:intergenic 40.0%
GGGTAGGAGAGATAATACAA+AGG + chr2_2:53464349-53464368 Msa0257500:intron 40.0%
AGAGAAAAGGGTCTCAATCT+CGG - chr2_2:53464404-53464423 None:intergenic 40.0%
AGTAGAAAATCCACCAAGGA+GGG - chr2_2:53464486-53464505 None:intergenic 40.0%
GAACAGTAGAAAATCCACCA+AGG - chr2_2:53464490-53464509 None:intergenic 40.0%
CTTTGGCAAACAAACAGCTT+TGG - chr2_2:53464572-53464591 None:intergenic 40.0%
CAAATCATTGTGCAGAGTCT+CGG - chr2_2:53464837-53464856 None:intergenic 40.0%
!! TATGCCTGCTTGTTATTCGA+TGG + chr2_2:53465161-53465180 Msa0257500:intron 40.0%
!! ATGCCTGCTTGTTATTCGAT+GGG + chr2_2:53465162-53465181 Msa0257500:intron 40.0%
ACCTCCGCATTTCTGAATAA+CGG - chr2_2:53465287-53465306 None:intergenic 40.0%
! GGAAAAGCACACGTTCATAT+AGG + chr2_2:53465406-53465425 Msa0257500:intron 40.0%
! TGATGAAGGTACACTTGAAG+AGG + chr2_2:53465514-53465533 Msa0257500:CDS 40.0%
AAGGCAAAATAAGGAGAGCA+AGG - chr2_2:53465618-53465637 None:intergenic 40.0%
GGGTTATAATTGTAACCGTG+TGG + chr2_2:53465700-53465719 Msa0257500:intron 40.0%
ACAGTTATAAAACCCCCACA+CGG - chr2_2:53465718-53465737 None:intergenic 40.0%
TCTGCAGCAAGATCTTCTAA+GGG - chr2_2:53465789-53465808 None:intergenic 40.0%
TTCTGCAGCAAGATCTTCTA+AGG - chr2_2:53465790-53465809 None:intergenic 40.0%
AGGTGATAGAGGGAATAGAT+TGG - chr2_2:53465866-53465885 None:intergenic 40.0%
TCACACGATGAGTTATCCTT+CGG + chr2_2:53466182-53466201 Msa0257500:intron 40.0%
ACATTCAATGTCCTCAGGAT+AGG - chr2_2:53466375-53466394 None:intergenic 40.0%
!! TAGACAAGTTTTATCGGGGA+AGG + chr2_2:53466500-53466519 Msa0257500:intron 40.0%
!! AGACAAGTTTTATCGGGGAA+GGG + chr2_2:53466501-53466520 Msa0257500:intron 40.0%
CATGTCATAGAGTTTCGACT+GGG + chr2_2:53467245-53467264 Msa0257500:intron 40.0%
ATAGCCTCATTATGCATAGC+CGG - chr2_2:53467327-53467346 None:intergenic 40.0%
GCACCAACAAACCGTAAATA+GGG - chr2_2:53467500-53467519 None:intergenic 40.0%
AGCACCAACAAACCGTAAAT+AGG - chr2_2:53467501-53467520 None:intergenic 40.0%
TATCAATCGCATCACATCTC+TGG + chr2_2:53467618-53467637 Msa0257500:CDS 40.0%
! ATCACATCTCTGGAAAGCAT+GGG + chr2_2:53467628-53467647 Msa0257500:CDS 40.0%
! GCCCATAACTTGCAACAATA+GGG - chr2_2:53467897-53467916 None:intergenic 40.0%
! AGCCCATAACTTGCAACAAT+AGG - chr2_2:53467898-53467917 None:intergenic 40.0%
!! TATTTTGTCAGGTCGGCTTT+CGG + chr2_2:53468072-53468091 Msa0257500:intron 40.0%
TCCTCAGCATAATGAGTCTT+TGG - chr2_2:53468235-53468254 None:intergenic 40.0%
TGCTGAGGACATTAGTAACA+TGG + chr2_2:53468246-53468265 Msa0257500:CDS 40.0%
TGAGGACATTAGTAACATGG+AGG + chr2_2:53468249-53468268 Msa0257500:CDS 40.0%
GAGATAACTGTCAACTGACA+TGG + chr2_2:53468271-53468290 Msa0257500:exon 40.0%
TGAAACCAGTTTCAGACAGA+TGG + chr2_2:53468563-53468582 Msa0257500:three_prime_UTR 40.0%
! TACTTCCATCTGTCTGAAAC+TGG - chr2_2:53468571-53468590 None:intergenic 40.0%
! CTGCAATGAGAAGTGTAGAG+AGG - chr2_2:53462611-53462630 None:intergenic 45.0%
ATGAGGATTGAGAATCGCGA+TGG - chr2_2:53462662-53462681 None:intergenic 45.0%
TTCGGAGGAAGATGAAGATG+AGG - chr2_2:53462679-53462698 None:intergenic 45.0%
TTCCTCCGAAGAATCTCTTC+AGG + chr2_2:53462689-53462708 Msa0257500:CDS 45.0%
AACCTGAAGAGATTCTTCGG+AGG - chr2_2:53462694-53462713 None:intergenic 45.0%
!! CATTAATCAGATGGTGGTGG+TGG - chr2_2:53463292-53463311 None:intergenic 45.0%
CACCACCACCATCTGATTAA+TGG + chr2_2:53463290-53463309 Msa0257500:intron 45.0%
GAAAGTGACAATGAAGCTGC+TGG + chr2_2:53463712-53463731 Msa0257500:CDS 45.0%
AGGAACTCAAAAGGCAAGAG+AGG + chr2_2:53463767-53463786 Msa0257500:CDS 45.0%
GGAACTCAAAAGGCAAGAGA+GGG + chr2_2:53463768-53463787 Msa0257500:CDS 45.0%
GGTGAATGTCCGTATTTACC+AGG - chr2_2:53464239-53464258 None:intergenic 45.0%
GGACATTCACCTGTTTGGAA+CGG + chr2_2:53464248-53464267 Msa0257500:intron 45.0%
TTTAGATAAAGGGGGGGCAA+AGG + chr2_2:53464313-53464332 Msa0257500:intron 45.0%
!! GGGTTTTGATGACACTCTCA+AGG - chr2_2:53464466-53464485 None:intergenic 45.0%
AGTGTCATCAAAACCCTCCT+TGG + chr2_2:53464470-53464489 Msa0257500:intron 45.0%
CAGTAGAAAATCCACCAAGG+AGG - chr2_2:53464487-53464506 None:intergenic 45.0%
!! TGCCTGCTTGTTATTCGATG+GGG + chr2_2:53465163-53465182 Msa0257500:intron 45.0%
! TTGTTATTCGATGGGGGAGA+GGG + chr2_2:53465170-53465189 Msa0257500:intron 45.0%
TTTGAAAGGCCGAAGAAGCT+CGG + chr2_2:53465247-53465266 Msa0257500:intron 45.0%
ACCGTTATTCAGAAATGCGG+AGG + chr2_2:53465283-53465302 Msa0257500:CDS 45.0%
TTCAGAAATGCGGAGGTTGA+AGG + chr2_2:53465290-53465309 Msa0257500:CDS 45.0%
GTGAGTCAACATCCTTGTTC+TGG + chr2_2:53465345-53465364 Msa0257500:intron 45.0%
CCTGAGACTAAACCAGAACA+AGG - chr2_2:53465360-53465379 None:intergenic 45.0%
!! CCTTGTTCTGGTTTAGTCTC+AGG + chr2_2:53465357-53465376 Msa0257500:intron 45.0%
GCACACGTTCATATAGGAAG+AGG + chr2_2:53465412-53465431 Msa0257500:intron 45.0%
AGAGGAAGCCAAAGCTCAAA+AGG + chr2_2:53465430-53465449 Msa0257500:CDS 45.0%
AAGCCAAAGCTCAAAAGGCT+AGG + chr2_2:53465435-53465454 Msa0257500:CDS 45.0%
AGCCAAAGCTCAAAAGGCTA+GGG + chr2_2:53465436-53465455 Msa0257500:CDS 45.0%
!! TTCCCTAGCCTTTTGAGCTT+TGG - chr2_2:53465441-53465460 None:intergenic 45.0%
CTGCGTTAGAGTTTGACAAG+TGG + chr2_2:53465471-53465490 Msa0257500:CDS 45.0%
CATTAGGTTTCGATGCCCTA+TGG - chr2_2:53465668-53465687 None:intergenic 45.0%
!! CATAGGGCATCGAAACCTAA+TGG + chr2_2:53465666-53465685 Msa0257500:intron 45.0%
TTGTGGGAGAAACAGTGTCA+CGG + chr2_2:53465950-53465969 Msa0257500:intron 45.0%
ATGGCAGTGAGTGATGTAAG+TGG - chr2_2:53466268-53466287 None:intergenic 45.0%
CTTACATCACTCACTGCCAT+CGG + chr2_2:53466268-53466287 Msa0257500:intron 45.0%
AGAAAGATCAGCCTATCCTG+AGG + chr2_2:53466361-53466380 Msa0257500:intron 45.0%
CAGCAAGTAGTTAGACAGCT+TGG - chr2_2:53466918-53466937 None:intergenic 45.0%
CCAGTCGAAACTCTATGACA+TGG - chr2_2:53467247-53467266 None:intergenic 45.0%
CCATGTCATAGAGTTTCGAC+TGG + chr2_2:53467244-53467263 Msa0257500:intron 45.0%
TAAAAGGGGAGGGTTGTGTT+AGG - chr2_2:53467292-53467311 None:intergenic 45.0%
! ACACAACCCTCCCCTTTTAT+TGG + chr2_2:53467293-53467312 Msa0257500:intron 45.0%
! CACAACCCTCCCCTTTTATT+GGG + chr2_2:53467294-53467313 Msa0257500:intron 45.0%
GAGCCCTATTTACGGTTTGT+TGG + chr2_2:53467494-53467513 Msa0257500:intron 45.0%
! CATCACATCTCTGGAAAGCA+TGG + chr2_2:53467627-53467646 Msa0257500:CDS 45.0%
TTAGATGCCATGTCATTCGC+AGG + chr2_2:53467803-53467822 Msa0257500:intron 45.0%
TAGATGCCATGTCATTCGCA+GGG + chr2_2:53467804-53467823 Msa0257500:intron 45.0%
ACCTACGTACATGCTAGAGT+AGG - chr2_2:53467979-53467998 None:intergenic 45.0%
TTTCTCACTTTGGGCTGTCT+AGG + chr2_2:53468025-53468044 Msa0257500:intron 45.0%
TTCTCACTTTGGGCTGTCTA+GGG + chr2_2:53468026-53468045 Msa0257500:intron 45.0%
!! ATTTTGTCAGGTCGGCTTTC+GGG + chr2_2:53468073-53468092 Msa0257500:intron 45.0%
! TTTCGGGTGTCATGGATGAT+AGG + chr2_2:53468089-53468108 Msa0257500:CDS 45.0%
! TTCGGGTGTCATGGATGATA+GGG + chr2_2:53468090-53468109 Msa0257500:CDS 45.0%
GCCAAAGACTCATTATGCTG+AGG + chr2_2:53468231-53468250 Msa0257500:CDS 45.0%
!! AACAATTAAATAATATTTAA+TGG - chr2_2:53465045-53465064 None:intergenic 5.0%
TGGCGTTTCCATAGGTAGAG+TGG - chr2_2:53462642-53462661 None:intergenic 50.0%
AATCGCGATGGCGTTTCCAT+AGG - chr2_2:53462650-53462669 None:intergenic 50.0%
AAACCTTGTTGCGTTGCAGG+CGG - chr2_2:53462892-53462911 None:intergenic 50.0%
CCAGTTTGCAACGTGGAATG+AGG - chr2_2:53463817-53463836 None:intergenic 50.0%
CCTCATTCCACGTTGCAAAC+TGG + chr2_2:53463814-53463833 Msa0257500:intron 50.0%
AGGTCATGACCAGTTCCTTC+AGG - chr2_2:53464219-53464238 None:intergenic 50.0%
TGAAGGAACTGGTCATGACC+TGG + chr2_2:53464218-53464237 Msa0257500:intron 50.0%
GGCAAAGGAGGAGGAAGAAT+GGG + chr2_2:53464328-53464347 Msa0257500:intron 50.0%
GCAAAGGAGGAGGAAGAATG+GGG + chr2_2:53464329-53464348 Msa0257500:intron 50.0%
GTCATCAAAACCCTCCTTGG+TGG + chr2_2:53464473-53464492 Msa0257500:intron 50.0%
AAGGTTTCTGCTGGCACTCA+TGG - chr2_2:53464523-53464542 None:intergenic 50.0%
GAGCAGAAGAAGGTTTCTGC+TGG - chr2_2:53464532-53464551 None:intergenic 50.0%
AAGCGAGTGCAAGTCCTATG+AGG + chr2_2:53464687-53464706 Msa0257500:intron 50.0%
!! GCCTGCTTGTTATTCGATGG+GGG + chr2_2:53465164-53465183 Msa0257500:intron 50.0%
TCCCCCATCGAATAACAAGC+AGG - chr2_2:53465168-53465187 None:intergenic 50.0%
!! CTTGTTATTCGATGGGGGAG+AGG + chr2_2:53465169-53465188 Msa0257500:intron 50.0%
TGTTATTCGATGGGGGAGAG+GGG + chr2_2:53465171-53465190 Msa0257500:intron 50.0%
CTTTGACTGCCGAGCTTCTT+CGG - chr2_2:53465259-53465278 None:intergenic 50.0%
! GTTGAAGGATGAAGAGCGTG+AGG + chr2_2:53465305-53465324 Msa0257500:CDS 50.0%
AGCTCAAAAGGCTAGGGAAG+AGG + chr2_2:53465442-53465461 Msa0257500:CDS 50.0%
AGGTACACTTGAAGAGGAGC+AGG + chr2_2:53465520-53465539 Msa0257500:CDS 50.0%
TGTGGGAGAAACAGTGTCAC+GGG + chr2_2:53465951-53465970 Msa0257500:intron 50.0%
TGTAAGTGGCCGATGGCTTA+TGG - chr2_2:53466254-53466273 None:intergenic 50.0%
TGAGTGATGTAAGTGGCCGA+TGG - chr2_2:53466261-53466280 None:intergenic 50.0%
GATATTAGTGGGATGGCCGA+TGG - chr2_2:53466287-53466306 None:intergenic 50.0%
TCGAGAGTCTACGCAAGATC+AGG + chr2_2:53466641-53466660 Msa0257500:intron 50.0%
AGAGTCTACGCAAGATCAGG+AGG + chr2_2:53466644-53466663 Msa0257500:intron 50.0%
TGACAGCTGACATCTCAGCT+AGG - chr2_2:53466877-53466896 None:intergenic 50.0%
CCAAGCCCAATAAAAGGGGA+GGG - chr2_2:53467302-53467321 None:intergenic 50.0%
! CCTCCCCTTTTATTGGGCTT+GGG + chr2_2:53467300-53467319 Msa0257500:intron 50.0%
GGTCCCAAGCCCAATAAAAG+GGG - chr2_2:53467306-53467325 None:intergenic 50.0%
CGGTCCCAAGCCCAATAAAA+GGG - chr2_2:53467307-53467326 None:intergenic 50.0%
! CCTTTTATTGGGCTTGGGAC+CGG + chr2_2:53467305-53467324 Msa0257500:intron 50.0%
ACTAAGTGGGGTCGGCTATA+TGG - chr2_2:53467403-53467422 None:intergenic 50.0%
ATATAGCCGACCCCACTTAG+TGG + chr2_2:53467402-53467421 Msa0257500:intron 50.0%
TATAGCCGACCCCACTTAGT+GGG + chr2_2:53467403-53467422 Msa0257500:intron 50.0%
! AAGCCTTGTCCCACTAAGTG+GGG - chr2_2:53467415-53467434 None:intergenic 50.0%
! CAAGCCTTGTCCCACTAAGT+GGG - chr2_2:53467416-53467435 None:intergenic 50.0%
TTCAAGCCCTGCGAATGACA+TGG - chr2_2:53467813-53467832 None:intergenic 50.0%
GCCTACTCTAGCATGTACGT+AGG + chr2_2:53467975-53467994 Msa0257500:intron 50.0%
TCTCACTTTGGGCTGTCTAG+GGG + chr2_2:53468027-53468046 Msa0257500:intron 50.0%
! TCGGGTGTCATGGATGATAG+GGG + chr2_2:53468091-53468110 Msa0257500:CDS 50.0%
! AGCTGCTGGTGATGAGCATG+AGG + chr2_2:53463726-53463745 Msa0257500:CDS 55.0%
AGATAAAGGGGGGGCAAAGG+AGG + chr2_2:53464316-53464335 Msa0257500:intron 55.0%
GGGCAAAGGAGGAGGAAGAA+TGG + chr2_2:53464327-53464346 Msa0257500:intron 55.0%
AGGAGGAGGAAGAATGGGGT+AGG + chr2_2:53464333-53464352 Msa0257500:intron 55.0%
TCTCGGCTGAGAGGCTACAA+TGG - chr2_2:53464387-53464406 None:intergenic 55.0%
GCTCGAGAGTGAGCAGAAGA+AGG - chr2_2:53464542-53464561 None:intergenic 55.0%
GTTATTCGATGGGGGAGAGG+GGG + chr2_2:53465172-53465191 Msa0257500:intron 55.0%
TTATTCGATGGGGGAGAGGG+GGG + chr2_2:53465173-53465192 Msa0257500:intron 55.0%
GTCTACGCAAGATCAGGAGG+TGG + chr2_2:53466647-53466666 Msa0257500:intron 55.0%
! CCCTCCCCTTTTATTGGGCT+TGG + chr2_2:53467299-53467318 Msa0257500:intron 55.0%
CCCAAGCCCAATAAAAGGGG+AGG - chr2_2:53467303-53467322 None:intergenic 55.0%
CCGGTCCCAAGCCCAATAAA+AGG - chr2_2:53467308-53467327 None:intergenic 55.0%
GGGACCGGCTATGCATAATG+AGG + chr2_2:53467320-53467339 Msa0257500:intron 55.0%
CTTGTCCCACTAAGTGGGGT+CGG - chr2_2:53467411-53467430 None:intergenic 55.0%
! CCAAGCCTTGTCCCACTAAG+TGG - chr2_2:53467417-53467436 None:intergenic 55.0%
CCACTTAGTGGGACAAGGCT+TGG + chr2_2:53467414-53467433 Msa0257500:intron 55.0%
CGTGCAGCAGGTTCTCTGAC+TGG - chr2_2:53462805-53462824 None:intergenic 60.0%
CAACCGTTCTCCGACGCATG+CGG - chr2_2:53462843-53462862 None:intergenic 60.0%
GGCAAGAGAGGGAAGCTCGA+CGG + chr2_2:53463779-53463798 Msa0257500:CDS 60.0%
TAAAGGGGGGGCAAAGGAGG+AGG + chr2_2:53464319-53464338 Msa0257500:intron 60.0%
GGGTCTCAATCTCGGCTGAG+AGG - chr2_2:53464396-53464415 None:intergenic 60.0%
! TGAGGCGCAGGAGCGTAAGT+TGG + chr2_2:53465323-53465342 Msa0257500:CDS 60.0%
CGACCCCACTTAGTGGGACA+AGG + chr2_2:53467409-53467428 Msa0257500:intron 60.0%
! AGGTCGGCTTTCGGGTGTCA+TGG + chr2_2:53468081-53468100 Msa0257500:intron 60.0%
TCGCCGCATGCGTCGGAGAA+CGG + chr2_2:53462837-53462856 Msa0257500:CDS 65.0%
CGTCGGAGAACGGTTGCGTC+TGG + chr2_2:53462847-53462866 Msa0257500:CDS 65.0%
GCTCCGCCTGCAACGCAACA+AGG + chr2_2:53462886-53462905 Msa0257500:CDS 65.0%
AGAGAGGGAAGCTCGACGGC+AGG + chr2_2:53463783-53463802 Msa0257500:CDS 65.0%
! GGATGAAGAGCGTGAGGCGC+AGG + chr2_2:53465311-53465330 Msa0257500:CDS 65.0%
GTAGCGGTGGCACGTGCAGC+AGG - chr2_2:53462817-53462836 None:intergenic 70.0%
ACGCATGCGGCGAGTAGCGG+TGG - chr2_2:53462830-53462849 None:intergenic 70.0%
CCGACGCATGCGGCGAGTAG+CGG - chr2_2:53462833-53462852 None:intergenic 70.0%
CCGCTACTCGCCGCATGCGT+CGG + chr2_2:53462830-53462849 Msa0257500:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 53462489 53468670 53462489 ID=Msa0257500;Name=Msa0257500
chr2_2 mRNA 53462489 53468670 53462489 ID=Msa0257500-mRNA-1;Parent=Msa0257500;Name=Msa0257500-mRNA-1;_AED=0.03;_eAED=0.03;_QI=96|1|1|1|1|1|8|382|295
chr2_2 exon 53462489 53462710 53462489 ID=Msa0257500-mRNA-1:exon:16035;Parent=Msa0257500-mRNA-1
chr2_2 exon 53462799 53462907 53462799 ID=Msa0257500-mRNA-1:exon:16036;Parent=Msa0257500-mRNA-1
chr2_2 exon 53463701 53463804 53463701 ID=Msa0257500-mRNA-1:exon:16037;Parent=Msa0257500-mRNA-1
chr2_2 exon 53465255 53465344 53465255 ID=Msa0257500-mRNA-1:exon:16038;Parent=Msa0257500-mRNA-1
chr2_2 exon 53465428 53465586 53465428 ID=Msa0257500-mRNA-1:exon:16039;Parent=Msa0257500-mRNA-1
chr2_2 exon 53465771 53465827 53465771 ID=Msa0257500-mRNA-1:exon:16040;Parent=Msa0257500-mRNA-1
chr2_2 exon 53467613 53467649 53467613 ID=Msa0257500-mRNA-1:exon:16041;Parent=Msa0257500-mRNA-1
chr2_2 exon 53468083 53468670 53468083 ID=Msa0257500-mRNA-1:exon:16042;Parent=Msa0257500-mRNA-1
chr2_2 five_prime_UTR 53462489 53462584 53462489 ID=Msa0257500-mRNA-1:five_prime_utr;Parent=Msa0257500-mRNA-1
chr2_2 CDS 53462585 53462710 53462585 ID=Msa0257500-mRNA-1:cds;Parent=Msa0257500-mRNA-1
chr2_2 CDS 53462799 53462907 53462799 ID=Msa0257500-mRNA-1:cds;Parent=Msa0257500-mRNA-1
chr2_2 CDS 53463701 53463804 53463701 ID=Msa0257500-mRNA-1:cds;Parent=Msa0257500-mRNA-1
chr2_2 CDS 53465255 53465344 53465255 ID=Msa0257500-mRNA-1:cds;Parent=Msa0257500-mRNA-1
chr2_2 CDS 53465428 53465586 53465428 ID=Msa0257500-mRNA-1:cds;Parent=Msa0257500-mRNA-1
chr2_2 CDS 53465771 53465827 53465771 ID=Msa0257500-mRNA-1:cds;Parent=Msa0257500-mRNA-1
chr2_2 CDS 53467613 53467649 53467613 ID=Msa0257500-mRNA-1:cds;Parent=Msa0257500-mRNA-1
chr2_2 CDS 53468083 53468288 53468083 ID=Msa0257500-mRNA-1:cds;Parent=Msa0257500-mRNA-1
chr2_2 three_prime_UTR 53468289 53468670 53468289 ID=Msa0257500-mRNA-1:three_prime_utr;Parent=Msa0257500-mRNA-1
Gene Sequence

>Msa0257500

ATGGATGATTTTTTCGTAGCAATCCTCTCTACACTTCTCATTGCAGCACTAATTCCACTCTACCTATGGAAACGCCATCGCGATTCTCAATCCTCATCTTCATCTTCCTCCGAAGAATCTCTTCAGGCTCCAGTCAGAGAACCTGCTGCACGTGCCACCGCTACTCGCCGCATGCGTCGGAGAACGGTTGCGTCTGGTGCTAGCTCTTCATCAGCTCCGCCTGCAACGCAACAAGAGTCTGGAGATGAAAGTGACAATGAAGCTGCTGGTGATGAGCATGAGGCCAAAGCATCAAAGAAAAAGGAACTCAAAAGGCAAGAGAGGGAAGCTCGACGGCAGGCCGAAGAAGCTCGGCAGTCAAAGCAAGACCGTTATTCAGAAATGCGGAGGTTGAAGGATGAAGAGCGTGAGGCGCAGGAGCGTAAGTTGGAAGAGGAAGCCAAAGCTCAAAAGGCTAGGGAAGAGGAAGCTGCTGCGTTAGAGTTTGACAAGTGGAAAGGTGAATTTTCAGTTGATGATGAAGGTACACTTGAAGAGGAGCAGGATAAAACTGAAGATTTGCTTACCAATTTTGTTGAATATATAAAGAAGCACAAATGTGTTCCCTTAGAAGATCTTGCTGCAGAATTTAAATTGCGCACACAGGAATGTATCAATCGCATCACATCTCTGGAAAGCATGGGTCGGCTTTCGGGTGTCATGGATGATAGGGGAAAATTCATTTACATCTCACAGGAAGAGATGAAAGCTGTTGCTGATTATATTAAGCGACAAGGGAGGGTTAGCATTTCCCATTTAGCTAGTAAATCAAACCAGTTCATTGATTTAGAGCCAAAGACTCATTATGCTGAGGACATTAGTAACATGGAGGAGATAACTGTCAACTGA

Protein sequence

>Msa0257500

MDDFFVAILSTLLIAALIPLYLWKRHRDSQSSSSSSSEESLQAPVREPAARATATRRMRRRTVASGASSSSAPPATQQESGDESDNEAAGDEHEAKASKKKELKRQEREARRQAEEARQSKQDRYSEMRRLKDEEREAQERKLEEEAKAQKAREEEAAALEFDKWKGEFSVDDEGTLEEEQDKTEDLLTNFVEYIKKHKCVPLEDLAAEFKLRTQECINRITSLESMGRLSGVMDDRGKFIYISQEEMKAVADYIKRQGRVSISHLASKSNQFIDLEPKTHYAEDISNMEEITVN*