AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1362840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1362840 MtrunA17_Chr4g0014841 93.153 555 38 0 1 555 1 555 0.0 1038
Msa1362840 MtrunA17_Chr4g0014791 87.814 558 62 3 1 555 1 555 0.0 979
Msa1362840 MtrunA17_Chr4g0014781 86.715 557 72 1 1 555 1 557 0.0 978
Msa1362840 MtrunA17_Chr4g0014801 87.253 557 69 1 1 555 1 557 0.0 976
Msa1362840 MtrunA17_Chr4g0014871 84.079 559 85 3 1 555 1 559 0.0 974
Msa1362840 MtrunA17_Chr4g0014861 85.023 434 62 2 125 555 1 434 0.0 764
Msa1362840 MtrunA17_Chr3g0077151 65.556 540 177 4 13 550 12 544 0.0 707
Msa1362840 MtrunA17_Chr8g0353031 48.250 543 247 7 30 549 19 550 1.04e-167 488
Msa1362840 MtrunA17_Chr8g0375311 42.606 568 286 9 10 546 21 579 5.40e-161 471
Msa1362840 MtrunA17_Chr7g0241741 41.135 564 305 8 8 548 1 560 2.37e-156 459
Msa1362840 MtrunA17_Chr8g0375291 42.190 557 292 8 10 540 21 573 1.10e-153 452
Msa1362840 MtrunA17_Chr4g0005901 40.780 564 307 7 10 550 13 572 4.44e-152 448
Msa1362840 MtrunA17_Chr7g0261811 40.827 556 303 6 17 549 15 567 5.33e-152 449
Msa1362840 MtrunA17_Chr3g0104011 41.593 565 301 9 10 549 3 563 2.44e-151 446
Msa1362840 MtrunA17_Chr4g0008651 39.677 557 305 7 17 550 22 570 5.38e-149 441
Msa1362840 MtrunA17_Chr3g0112671 39.076 563 304 8 10 549 14 560 9.99e-149 439
Msa1362840 MtrunA17_Chr3g0114501 39.928 556 311 5 17 551 10 563 1.47e-147 437
Msa1362840 MtrunA17_Chr8g0375341 40.395 557 300 8 17 546 28 579 2.00e-146 434
Msa1362840 MtrunA17_Chr3g0112611 39.474 570 311 8 3 549 11 569 2.89e-146 434
Msa1362840 MtrunA17_Chr8g0375351 40.820 561 300 7 17 550 28 583 1.47e-145 431
Msa1362840 MtrunA17_Chr7g0261881 38.129 556 318 6 17 549 15 567 1.49e-143 427
Msa1362840 MtrunA17_Chr7g0261791 39.497 557 310 5 17 549 17 570 2.28e-143 427
Msa1362840 MtrunA17_Chr7g0240381 38.489 556 307 8 17 550 17 559 1.31e-142 424
Msa1362840 MtrunA17_Chr1g0166791 39.568 556 308 7 17 548 12 563 1.91e-142 424
Msa1362840 MtrunA17_Chr8g0375361 39.721 574 312 8 1 546 11 578 5.73e-141 420
Msa1362840 MtrunA17_Chr7g0261771 38.849 556 314 6 17 549 19 571 4.62e-140 418
Msa1362840 MtrunA17_Chr8g0375321 39.677 557 304 8 17 546 25 576 4.65e-140 417
Msa1362840 MtrunA17_Chr1g0166711 40.360 555 304 8 17 548 13 563 8.55e-140 417
Msa1362840 MtrunA17_Chr8g0375331 39.616 573 309 9 1 546 1 563 9.57e-140 416
Msa1362840 MtrunA17_Chr1g0187241 38.129 556 316 7 17 548 14 565 1.75e-136 409
Msa1362840 MtrunA17_Chr1g0166741 38.476 538 294 8 17 529 15 540 1.56e-131 395
Msa1362840 MtrunA17_Chr5g0399061 38.004 571 321 8 12 553 10 576 6.56e-128 386
Msa1362840 MtrunA17_Chr3g0082631 44.568 451 214 9 131 552 21 464 3.46e-127 380
Msa1362840 MtrunA17_Chr7g0261851 37.230 556 323 6 17 549 16 568 3.54e-127 385
Msa1362840 MtrunA17_Chr4g0056431 39.168 577 313 8 8 551 4 575 4.18e-126 382
Msa1362840 MtrunA17_Chr5g0399071 38.502 574 318 8 8 551 4 572 1.28e-123 375
Msa1362840 MtrunA17_Chr1g0166771 39.020 510 274 8 48 532 10 507 2.62e-122 370
Msa1362840 MtrunA17_Chr5g0422881 37.209 559 312 10 28 552 19 572 1.60e-121 370
Msa1362840 MtrunA17_Chr6g0451841 36.364 539 305 9 36 550 12 536 5.50e-118 359
Msa1362840 MtrunA17_Chr3g0142101 36.380 558 320 9 9 543 15 560 5.02e-117 358
Msa1362840 MtrunA17_Chr7g0217461 36.380 569 329 10 10 548 5 570 1.60e-116 357
Msa1362840 MtrunA17_Chr7g0255621 36.413 552 316 10 29 551 20 565 3.60e-116 357
Msa1362840 MtrunA17_Chr7g0255611 34.884 559 329 10 10 539 12 564 4.55e-115 353
Msa1362840 MtrunA17_Chr7g0214461 34.608 549 325 9 23 546 72 611 2.98e-112 347
Msa1362840 MtrunA17_Chr5g0400371 35.652 575 334 10 3 546 86 655 3.15e-111 346
Msa1362840 MtrunA17_Chr7g0255601 34.206 573 344 9 9 552 7 575 6.23e-109 338
Msa1362840 MtrunA17_Chr4g0054891 34.982 566 327 10 10 544 91 646 1.01e-106 334
Msa1362840 MtrunA17_Chr2g0276751 35.294 561 326 9 10 549 19 563 4.28e-105 328
Msa1362840 MtrunA17_Chr3g0142091 35.326 552 320 10 20 546 17 556 1.49e-104 326
Msa1362840 MtrunA17_Chr4g0063591 38.628 554 305 9 16 543 9 553 1.71e-104 325
Msa1362840 MtrunA17_Chr5g0415961 34.024 579 340 10 11 554 6 577 2.73e-104 325
Msa1362840 MtrunA17_Chr5g0415791 34.595 555 323 9 29 549 29 577 4.33e-104 325
Msa1362840 MtrunA17_Chr1g0166731 39.254 456 250 8 116 548 9 460 4.95e-104 321
Msa1362840 MtrunA17_Chr8g0362711 35.263 570 326 9 18 552 13 574 1.17e-103 323
Msa1362840 MtrunA17_Chr7g0218851 33.514 555 325 11 23 546 40 581 1.74e-103 324
Msa1362840 MtrunA17_Chr1g0213711 33.945 545 326 8 27 546 19 554 2.26e-103 323
Msa1362840 MtrunA17_Chr2g0284701 32.997 594 349 12 2 552 4 591 3.02e-102 320
Msa1362840 MtrunA17_Chr7g0261661 37.281 456 260 5 117 549 1 453 4.39e-102 317
Msa1362840 MtrunA17_Chr7g0261751 35.759 481 247 6 17 438 19 496 3.17e-99 310
Msa1362840 MtrunA17_Chr3g0133341 33.455 550 332 10 25 549 10 550 1.68e-96 305
Msa1362840 MtrunA17_Chr4g0059971 33.333 552 326 10 35 550 40 585 2.39e-96 305
Msa1362840 MtrunA17_Chr5g0439381 35.993 564 321 9 17 555 16 564 8.19e-96 303
Msa1362840 MtrunA17_Chr8g0379971 33.559 590 339 13 15 552 6 594 9.57e-96 303
Msa1362840 MtrunA17_Chr1g0157601 33.026 542 328 8 33 546 19 553 1.23e-94 300
Msa1362840 MtrunA17_Chr8g0362781 32.028 562 341 9 23 548 24 580 1.41e-94 300
Msa1362840 MtrunA17_Chr1g0157611 32.977 561 339 9 16 546 1 554 3.02e-94 299
Msa1362840 MtrunA17_Chr4g0059991 32.620 561 333 10 21 548 24 572 5.32e-94 299
Msa1362840 MtrunA17_Chr4g0011041 31.930 570 343 12 17 553 24 581 2.81e-92 294
Msa1362840 MtrunA17_Chr8g0390331 32.721 544 337 10 28 546 14 553 8.73e-92 293
Msa1362840 MtrunA17_Chr7g0214731 31.495 562 340 11 30 553 62 616 1.53e-91 293
Msa1362840 MtrunA17_Chr4g0069581 34.845 485 285 11 87 550 44 518 1.44e-89 286
Msa1362840 MtrunA17_Chr1g0147631 32.168 572 342 12 4 546 10 564 1.65e-89 287
Msa1362840 MtrunA17_Chr4g0059981 32.762 583 343 12 3 550 14 582 3.70e-89 286
Msa1362840 MtrunA17_Chr1g0157621 32.887 523 319 8 50 546 1 517 1.03e-88 284
Msa1362840 MtrunA17_Chr4g0060001 31.059 557 347 8 27 553 27 576 3.06e-86 279
Msa1362840 MtrunA17_Chr7g0240271 28.496 565 362 8 17 547 12 568 3.94e-85 275
Msa1362840 MtrunA17_Chr4g0011471 31.818 528 321 10 50 546 37 556 4.56e-85 275
Msa1362840 MtrunA17_Chr7g0271221 31.365 542 343 9 29 551 17 548 1.33e-84 274
Msa1362840 MtrunA17_Chr8g0379991 33.571 560 306 11 58 552 9 567 4.95e-84 272
Msa1362840 MtrunA17_Chr2g0331521 30.660 561 351 12 17 546 10 563 5.98e-84 272
Msa1362840 MtrunA17_Chr1g0193391 30.216 556 357 11 17 551 3 548 1.30e-83 272
Msa1362840 MtrunA17_Chr4g0003761 31.646 553 339 12 25 548 27 569 1.84e-83 271
Msa1362840 MtrunA17_Chr2g0331471 32.753 574 339 17 10 548 68 629 1.02e-82 272
Msa1362840 MtrunA17_Chr2g0331481 31.065 573 351 14 10 548 4 566 1.66e-81 267
Msa1362840 MtrunA17_Chr2g0331511 29.101 567 364 9 10 546 4 562 1.77e-77 256
Msa1362840 MtrunA17_Chr7g0240281 29.264 557 350 8 27 547 22 570 2.62e-77 255
Msa1362840 MtrunA17_Chr8g0362801 34.389 442 264 7 133 555 31 465 1.58e-76 249
Msa1362840 MtrunA17_Chr7g0261731 38.554 332 179 4 17 325 19 348 3.12e-75 243
Msa1362840 MtrunA17_Chr1g0177591 30.258 542 343 12 25 548 40 564 4.47e-75 248
Msa1362840 MtrunA17_Chr2g0331461 30.070 572 358 13 10 548 4 566 1.06e-74 249
Msa1362840 MtrunA17_Chr3g0112631 42.449 245 140 1 305 549 29 272 1.17e-73 236
Msa1362840 MtrunA17_Chr5g0415841 31.746 441 277 6 128 549 24 459 1.15e-71 236
Msa1362840 MtrunA17_Chr2g0326211 31.119 572 333 13 16 550 1 548 1.60e-69 233
Msa1362840 MtrunA17_Chr2g0325951 30.123 571 340 12 16 550 1 548 1.08e-68 231
Msa1362840 MtrunA17_Chr2g0325961 30.662 574 334 14 16 550 1 549 1.36e-68 231
Msa1362840 MtrunA17_Chr7g0235521 29.754 447 280 7 127 547 19 457 2.05e-64 218
Msa1362840 MtrunA17_Chr4g0014851 83.065 124 20 1 1 123 1 124 5.74e-64 206
Msa1362840 MtrunA17_Chr7g0240181 29.530 447 281 7 127 547 19 457 5.08e-63 214
Msa1362840 MtrunA17_Chr7g0240131 29.530 447 281 7 127 547 19 457 5.13e-63 214
Msa1362840 MtrunA17_Chr7g0240211 29.530 447 281 7 127 547 19 457 5.76e-63 214
Msa1362840 MtrunA17_Chr4g0060071 38.745 271 161 4 280 549 32 298 2.21e-59 199
Msa1362840 MtrunA17_Chr1g0177611 28.667 450 288 10 117 548 1 435 5.10e-58 200
Msa1362840 MtrunA17_Chr7g0240151 28.412 447 268 8 127 547 19 439 2.27e-57 199
Msa1362840 MtrunA17_Chr3g0142111 38.662 269 154 3 9 268 26 292 5.36e-55 189
Msa1362840 MtrunA17_Chr1g0177631 28.000 450 291 10 117 548 1 435 1.96e-54 190
Msa1362840 MtrunA17_Chr3g0142121 37.698 252 147 4 292 543 21 262 4.12e-53 182
Msa1362840 MtrunA17_Chr7g0234181 28.966 435 280 7 119 546 1 413 8.69e-51 179
Msa1362840 MtrunA17_Chr7g0234381 28.995 438 282 8 116 546 3 418 6.36e-50 177
Msa1362840 MtrunA17_Chr7g0234151 28.995 438 282 7 116 546 3 418 9.01e-50 177
Msa1362840 MtrunA17_Chr7g0261721 40.500 200 118 1 350 549 3 201 1.15e-48 168
Msa1362840 MtrunA17_Chr3g0112651 39.490 157 78 4 116 261 21 171 1.96e-31 121
Msa1362840 MtrunA17_Chr3g0112661 47.525 101 53 0 15 115 17 117 2.58e-29 112
Msa1362840 MtrunA17_Chr1g0166721 46.903 113 55 1 17 129 13 120 7.98e-29 111
Msa1362840 MtrunA17_Chr7g0261671 44.444 99 55 0 17 115 20 118 2.46e-25 100
Msa1362840 MtrunA17_Chr1g0147591 30.000 200 118 8 141 322 3 198 3.86e-21 91.7
Msa1362840 MtrunA17_Chr3g0082621 52.778 72 34 0 44 115 1 72 2.04e-20 85.9
Msa1362840 MtrunA17_Chr4g0060061 35.537 121 75 2 132 249 8 128 6.51e-20 86.3
Msa1362840 MtrunA17_Chr2g0326221 26.423 246 149 4 304 549 10 223 7.52e-20 88.6
Msa1362840 MtrunA17_Chr7g0261831 30.460 174 102 3 251 405 3 176 2.72e-17 80.9
Msa1362840 MtrunA17_Chr1g0147581 36.283 113 64 2 412 523 11 116 1.49e-15 73.2
Msa1362840 MtrunA17_Chr4g0060051 33.981 103 68 0 10 112 3 105 7.03e-14 68.6
Msa1362840 MtrunA17_Chr7g0240221 27.273 99 72 0 17 115 15 113 3.50e-13 66.6
Msa1362840 MtrunA17_Chr7g0240191 27.273 99 72 0 17 115 15 113 3.50e-13 66.6
Msa1362840 MtrunA17_Chr7g0240161 27.273 99 72 0 17 115 15 113 3.50e-13 66.6
Msa1362840 MtrunA17_Chr7g0240141 26.263 99 73 0 17 115 15 113 1.32e-12 64.7
Msa1362840 MtrunA17_Chr7g0261821 44.444 63 35 0 487 549 1 63 5.91e-12 61.2
Msa1362840 MtrunA17_Chr8g0362791 37.662 77 48 0 35 111 42 118 3.42e-11 61.6
Msa1362840 MtrunA17_Chr7g0235511 25.743 101 73 1 17 115 15 115 8.25e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1362840 AT1G22540.1 63.437 547 186 4 10 547 9 550 0.0 676
Msa1362840 AT1G72125.1 55.575 565 236 6 1 554 1 561 0.0 611
Msa1362840 AT1G72140.1 56.307 547 213 4 16 549 19 552 0.0 609
Msa1362840 AT1G72120.1 57.092 557 228 6 1 550 1 553 0.0 608
Msa1362840 AT1G22550.1 55.221 565 231 6 1 550 3 560 0.0 601
Msa1362840 AT1G22570.1 55.515 553 222 7 16 550 15 561 0.0 578
Msa1362840 AT1G22570.2 55.028 527 213 7 42 550 4 524 0.0 544
Msa1362840 AT1G72130.1 54.631 529 218 6 29 551 23 535 0.0 541
Msa1362840 AT3G54450.1 43.750 544 271 8 29 549 11 542 1.03e-166 485
Msa1362840 AT2G02040.1 40.696 575 301 9 3 546 13 578 1.63e-151 447
Msa1362840 AT5G01180.2 41.293 557 299 8 17 549 11 563 1.37e-150 444
Msa1362840 AT5G01180.3 41.293 557 299 8 17 549 11 563 1.37e-150 444
Msa1362840 AT5G01180.1 41.293 557 299 8 17 549 11 563 1.37e-150 444
Msa1362840 AT3G54140.1 40.780 564 305 7 10 548 3 562 1.81e-150 444
Msa1362840 AT3G54140.2 40.780 564 305 7 10 548 3 562 1.81e-150 444
Msa1362840 AT1G72130.2 52.074 434 186 6 125 552 1 418 1.72e-146 428
Msa1362840 AT1G72130.3 52.074 434 186 6 125 552 1 418 1.72e-146 428
Msa1362840 AT2G37900.1 41.021 568 289 11 10 549 17 566 5.81e-143 425
Msa1362840 AT3G53960.1 38.660 582 312 10 3 549 2 573 2.43e-142 424
Msa1362840 AT1G62200.1 39.964 553 289 8 17 539 38 577 5.57e-141 420
Msa1362840 AT2G40460.1 40.323 558 308 7 11 549 4 555 3.38e-138 413
Msa1362840 AT2G02020.1 40.108 556 296 8 3 548 14 542 4.98e-138 411
Msa1362840 AT1G62200.2 37.973 582 289 8 17 539 38 606 3.42e-135 406
Msa1362840 AT1G62200.3 37.973 582 289 8 17 539 52 620 5.30e-135 406
Msa1362840 AT5G46040.1 38.692 535 303 6 17 529 13 544 1.19e-131 396
Msa1362840 AT5G46050.1 37.477 555 320 6 17 548 13 563 2.70e-129 390
Msa1362840 AT2G02020.2 38.669 556 283 9 3 548 14 521 2.01e-125 378
Msa1362840 AT5G14940.1 37.662 539 310 8 29 546 5 538 1.12e-123 375
Msa1362840 AT2G37900.2 41.071 504 251 11 74 549 2 487 1.03e-121 368
Msa1362840 AT3G01350.1 36.832 543 307 8 33 544 9 546 3.44e-117 358
Msa1362840 AT1G69870.1 37.251 553 310 10 28 549 48 594 2.87e-115 355
Msa1362840 AT1G68570.1 38.404 539 301 6 40 549 32 568 1.71e-113 350
Msa1362840 AT1G68570.2 38.390 534 298 6 45 549 7 538 4.31e-113 348
Msa1362840 AT1G32450.1 35.026 571 332 9 10 546 16 581 1.63e-110 343
Msa1362840 AT1G12110.1 35.567 582 325 12 3 551 7 571 8.05e-110 340
Msa1362840 AT4G21680.1 34.783 575 340 11 5 548 2 572 8.59e-107 332
Msa1362840 AT2G26690.1 36.937 555 312 11 16 543 9 552 6.68e-105 327
Msa1362840 AT1G69850.1 32.821 585 347 9 9 552 3 582 6.43e-101 317
Msa1362840 AT3G21670.1 36.396 555 312 10 21 549 19 558 1.20e-99 314
Msa1362840 AT1G27040.1 32.574 571 359 8 6 555 2 567 5.35e-99 311
Msa1362840 AT1G33440.1 35.714 574 315 11 7 546 14 567 7.23e-99 312
Msa1362840 AT1G59740.1 34.116 554 325 10 20 544 30 572 2.22e-98 310
Msa1362840 AT1G27040.2 32.857 560 350 8 17 555 9 563 2.43e-98 310
Msa1362840 AT1G18880.1 32.734 556 331 11 35 555 23 570 8.35e-96 303
Msa1362840 AT5G46050.2 36.123 454 263 6 119 549 3 452 3.10e-95 298
Msa1362840 AT2G26690.2 36.364 528 298 11 43 543 3 519 6.68e-95 300
Msa1362840 AT3G16180.1 33.034 557 331 11 25 546 16 565 4.22e-94 299
Msa1362840 AT1G52190.1 32.841 542 324 9 40 546 30 566 5.72e-94 300
Msa1362840 AT5G62730.1 31.625 566 356 9 1 548 32 584 2.04e-93 297
Msa1362840 AT1G27040.3 32.959 534 332 8 43 555 7 535 7.99e-92 291
Msa1362840 AT5G19640.1 33.456 544 311 13 32 546 60 581 1.79e-91 293
Msa1362840 AT2G26690.3 35.977 517 293 11 54 543 2 507 3.51e-90 287
Msa1362840 AT5G62680.1 32.240 549 335 10 35 549 47 592 1.31e-88 286
Msa1362840 AT5G13400.1 30.605 562 354 8 20 548 52 610 3.14e-87 282
Msa1362840 AT5G62730.2 31.638 531 338 8 37 549 3 526 5.79e-87 279
Msa1362840 AT1G27080.1 32.504 563 333 12 18 549 2 548 6.09e-87 280
Msa1362840 AT3G47960.1 32.058 549 334 11 35 549 65 608 8.35e-85 276
Msa1362840 AT1G69860.1 32.110 545 325 11 35 550 22 550 9.03e-80 261
Msa1362840 AT5G28470.2 29.910 555 348 13 28 551 14 558 1.53e-79 260
Msa1362840 AT3G25280.1 31.903 536 330 11 21 546 11 521 2.09e-79 259
Msa1362840 AT1G27080.2 32.370 519 305 11 62 549 3 506 1.23e-78 257
Msa1362840 AT5G28470.1 29.730 555 347 14 28 551 14 556 5.18e-77 254
Msa1362840 AT3G25260.1 30.571 543 340 11 12 546 2 515 1.71e-74 246
Msa1362840 AT3G45710.1 30.672 551 325 12 31 550 21 545 3.95e-68 230
Msa1362840 AT3G45680.1 30.541 573 338 16 11 553 2 544 6.84e-68 229
Msa1362840 AT3G45650.1 28.980 559 354 13 17 553 8 545 2.24e-67 228
Msa1362840 AT3G45660.1 29.787 517 318 10 58 550 48 543 1.08e-65 224
Msa1362840 AT3G45660.3 29.787 517 318 10 58 550 48 543 1.08e-65 224
Msa1362840 AT3G45660.2 29.787 517 318 10 58 550 69 564 2.05e-65 223
Msa1362840 AT3G45700.1 29.650 543 336 11 30 550 15 533 4.84e-65 221
Msa1362840 AT5G11570.1 27.413 518 302 8 40 546 22 476 2.98e-63 215
Msa1362840 AT3G45650.2 27.959 583 355 13 17 553 8 571 7.64e-62 214
Msa1362840 AT3G45720.1 29.228 544 326 15 40 553 28 542 1.25e-60 210
Msa1362840 AT3G45690.1 29.456 533 293 15 30 538 17 490 5.17e-56 196
Msa1362840 AT2G38100.2 27.553 519 311 17 59 548 2 484 1.10e-43 162
Msa1362840 AT2G38100.3 27.553 519 311 17 59 548 24 506 1.98e-43 162
Msa1362840 AT2G38100.1 27.553 519 311 17 59 548 18 500 2.36e-43 162

Find 118 sgRNAs with CRISPR-Local

Find 399 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTAGTTCCTCTCTGTTTAT+TGG 0.148337 tig0017934:-21830 Msa1362840:three_prime_UTR
CTTTCTTTCTTTCTTTATTA+AGG 0.152623 tig0017934:+28305 None:intergenic
TGGGCTACAACTTTGGTTTA+TGG 0.167031 tig0017934:-22697 Msa1362840:CDS
CTAGAAGCTCATTCTTTAAT+TGG 0.184688 tig0017934:-23395 Msa1362840:CDS
AAACCTTGTGTTCAAGCTTT+TGG 0.192944 tig0017934:-23459 Msa1362840:CDS
TACTAAGGTTGGTTCCAATT+TGG 0.203651 tig0017934:-22717 Msa1362840:CDS
GATAACTATAGTTGGATTCT+TGG 0.220654 tig0017934:-23312 Msa1362840:CDS
CTAGTTCCTCTCTGTTTATT+GGG 0.237782 tig0017934:-21829 Msa1362840:three_prime_UTR
CCCATGCTTCTTAGTTCATT+TGG 0.244157 tig0017934:+22247 None:intergenic
TACCATCGTTAGACCTTATA+AGG 0.245141 tig0017934:+21783 None:intergenic
CACAAATATCCGGTCGTAGA+TGG 0.247206 tig0017934:+22540 None:intergenic
GCAGAGAGGATATCATATTT+TGG 0.269709 tig0017934:-27212 Msa1362840:CDS
TATAGTTGGATTCTTGGATT+TGG 0.272236 tig0017934:-23306 Msa1362840:CDS
GACATATAGGTTTAACATTA+AGG 0.274752 tig0017934:-23229 Msa1362840:CDS
CCATGCTTCTTAGTTCATTT+GGG 0.297304 tig0017934:+22248 None:intergenic
ACCAAAGTTGTAGCCCAAAT+TGG 0.299132 tig0017934:+22703 None:intergenic
TCCAATTTGGGCTACAACTT+TGG 0.299380 tig0017934:-22704 Msa1362840:CDS
ACTACAAGTCTCGTCTTCTT+TGG 0.301060 tig0017934:+22768 None:intergenic
ACTAAGGTTGGTTCCAATTT+GGG 0.303752 tig0017934:-22716 Msa1362840:CDS
CGCATTGGAACAGTTGCATT+TGG 0.309636 tig0017934:+22361 None:intergenic
ATCACATTGCTTCAAAGAAT+TGG 0.335669 tig0017934:-22481 Msa1362840:CDS
GCTCAATTAGCTATTGTTGA+TGG 0.341902 tig0017934:-28147 Msa1362840:CDS
TGCTTCTCTTATCTACATAT+TGG 0.348865 tig0017934:-27027 Msa1362840:intron
GCACTCTATTTGAGTATTGT+TGG 0.352342 tig0017934:-22220 Msa1362840:CDS
TTAGGTCCAAATCTGGTTAC+TGG 0.355892 tig0017934:-28095 Msa1362840:CDS
AAAGAAGTGAATTATTGAAT+AGG 0.357324 tig0017934:-28208 Msa1362840:five_prime_UTR
CAACTGTTCCAATGCGTATA+TGG 0.357493 tig0017934:-22354 Msa1362840:CDS
ATGCAGAAAACAATAGTTCC+TGG 0.369097 tig0017934:-22625 Msa1362840:CDS
TTCAATATCCGCTGTTGATA+AGG 0.369755 tig0017934:+23137 None:intergenic
TCGTTGCAGCTGTAAGAAAT+TGG 0.371085 tig0017934:-23167 Msa1362840:CDS
GCTTCTCTACTTCCTCTGTT+AGG 0.391870 tig0017934:-27098 Msa1362840:CDS
CCAGTGATGGCTCCCTTATA+AGG 0.393860 tig0017934:-21796 Msa1362840:three_prime_UTR
TGATCTCCAGTAACCAGATT+TGG 0.395595 tig0017934:+28089 None:intergenic
CTGCATAGAACTCCCTTGCT+TGG 0.411271 tig0017934:+22642 None:intergenic
TATTGAATAGGTTTGTTTGA+TGG 0.413794 tig0017934:-28196 Msa1362840:exon
TCGTCTTCTTTGGATCCCTT+TGG 0.422330 tig0017934:+22778 None:intergenic
AACTTGATATCATATCTAAC+AGG 0.425289 tig0017934:-27179 Msa1362840:CDS
ACAAATATCCGGTCGTAGAT+GGG 0.426366 tig0017934:+22541 None:intergenic
AGATCAGCTTGGTTTATCAT+AGG 0.426721 tig0017934:-28072 Msa1362840:intron
GTTCTGTGACAATATCAATA+AGG 0.432594 tig0017934:-22122 Msa1362840:CDS
CTTGCTGGATTAAGTGTCAT+GGG 0.435853 tig0017934:-22073 Msa1362840:CDS
TGCTTGGAACAAGGACATAT+AGG 0.436907 tig0017934:-23242 Msa1362840:CDS
ATATTCAAGATAACTATAGT+TGG 0.443049 tig0017934:-23320 Msa1362840:CDS
CACAAAGGTATCATCTCATA+AGG 0.449090 tig0017934:-22007 Msa1362840:exon
CTGCTAAGAATGTCAATGTT+TGG 0.449566 tig0017934:-27130 Msa1362840:CDS
CCTTATAAGGGAGCCATCAC+TGG 0.460056 tig0017934:+21796 None:intergenic
TTGCTAGTGGCACAAATATC+CGG 0.464706 tig0017934:+22530 None:intergenic
AGCTTCTAACAACACTTCGT+TGG 0.473548 tig0017934:+28167 None:intergenic
GAAGCTCATTCTTTAATTGG+TGG 0.474451 tig0017934:-23392 Msa1362840:CDS
TCTTTCTTTCTTTATTAAGG+TGG 0.474504 tig0017934:+28308 None:intergenic
TCTACATTCTTCACCAAGCA+AGG 0.478008 tig0017934:-22655 Msa1362840:CDS
AAGAATGTCAATGTTTGGTC+TGG 0.481539 tig0017934:-27125 Msa1362840:CDS
CCTGCCGTTAGGTCCAAATC+TGG 0.487726 tig0017934:-28102 Msa1362840:CDS
ACTTGCTGGATTAAGTGTCA+TGG 0.493666 tig0017934:-22074 Msa1362840:CDS
CTGGTTACTGGAGATCAGCT+TGG 0.496420 tig0017934:-28083 Msa1362840:CDS
ACAAAATTCTAACACGTGCT+TGG 0.503075 tig0017934:+21922 None:intergenic
GTTATCGTTTGAAGAGAGGC+AGG 0.510826 tig0017934:+22589 None:intergenic
GTAAAGATGGTCATGAAAGT+TGG 0.510870 tig0017934:-22144 Msa1362840:CDS
TCACTCTATCTAGTTGCCAT+TGG 0.515187 tig0017934:-23495 Msa1362840:CDS
TACTATGGTTGCAGGTGCCA+CGG 0.515339 tig0017934:-23364 Msa1362840:CDS
CTTCTAGCTATATGCTCCTC+GGG 0.515744 tig0017934:+23411 None:intergenic
GTTGCAGTGCTTTGTTTGAG+TGG 0.521993 tig0017934:+27155 None:intergenic
TAATATAATTTACAGGGACT+AGG 0.523704 tig0017934:-23594 Msa1362840:intron
ACCATCGTTAGACCTTATAA+GGG 0.524874 tig0017934:+21784 None:intergenic
ACAGAGGACAACCTGCCGTT+AGG 0.526080 tig0017934:-28113 Msa1362840:CDS
AAAGAAAACAATGGCGACAT+TGG 0.528764 tig0017934:+22567 None:intergenic
GTTATGTTTAGGTGTGGAAG+TGG 0.532182 tig0017934:-27234 Msa1362840:intron
ACACGGCCGATTCTAAGAAA+AGG 0.535424 tig0017934:+23192 None:intergenic
TTGCTTCAAAGAATTGGCAC+TGG 0.536263 tig0017934:-22475 Msa1362840:CDS
CCCAAATGAACTAAGAAGCA+TGG 0.542573 tig0017934:-22248 Msa1362840:CDS
TATTTGAGTATTGTTGGTGT+TGG 0.547399 tig0017934:-22214 Msa1362840:CDS
AAGAAGCAAAGGCAGTACTA+AGG 0.553947 tig0017934:-22732 Msa1362840:CDS
ATTATCACTGGAAAACCCTC+AGG 0.554862 tig0017934:-22505 Msa1362840:CDS
ATCAACCACCATATACGCAT+TGG 0.557984 tig0017934:+22346 None:intergenic
TTACAGCTGCAACGAATACA+CGG 0.559250 tig0017934:+23175 None:intergenic
CCAGTGATAATTCTTGCTAG+TGG 0.559402 tig0017934:+22517 None:intergenic
CAGTGAGATCGAAGAAGCAA+AGG 0.559693 tig0017934:-22743 Msa1362840:CDS
GCCCCAAAAGCTTGAACACA+AGG 0.560276 tig0017934:+23456 None:intergenic
AGCAAAGGCAGTACTAAGGT+TGG 0.564362 tig0017934:-22728 Msa1362840:CDS
CCACTAGCAAGAATTATCAC+TGG 0.568272 tig0017934:-22517 Msa1362840:CDS
GCTTCTAGCTATATGCTCCT+CGG 0.569783 tig0017934:+23410 None:intergenic
TCTTTAGCCCCATCTACGAC+CGG 0.571252 tig0017934:-22549 Msa1362840:CDS
CAAGGGCAGGTTCCTCAACA+TGG 0.573606 tig0017934:-22812 Msa1362840:intron
GGTGTTGGAAGCTTTCTAAG+TGG 0.575161 tig0017934:-22199 Msa1362840:CDS
TTGCTGGATTAAGTGTCATG+GGG 0.576133 tig0017934:-22072 Msa1362840:CDS
TTTATGTCCACCTTGTCCAA+TGG 0.576173 tig0017934:+23479 None:intergenic
GTAGAACAAGATGTGAGTGA+AGG 0.576984 tig0017934:+23546 None:intergenic
ACTCCAAACAGAAAATATTG+AGG 0.578463 tig0017934:+22322 None:intergenic
CCAGATTTGGACCTAACGGC+AGG 0.579651 tig0017934:+28102 None:intergenic
CCAAATGAACTAAGAAGCAT+GGG 0.579849 tig0017934:-22247 Msa1362840:CDS
ACAGCGGATATTGAAGAGGA+TGG 0.580451 tig0017934:-23129 Msa1362840:CDS
GGGTTGATCCACACCAGTGA+TGG 0.580568 tig0017934:-21809 Msa1362840:three_prime_UTR
ATTGGTTATCGTTTGAAGAG+AGG 0.586290 tig0017934:+22585 None:intergenic
TATCTAGTTGCCATTGGACA+AGG 0.587068 tig0017934:-23489 Msa1362840:CDS
CTACATTCTTCACCAAGCAA+GGG 0.587319 tig0017934:-22654 Msa1362840:CDS
ATGGCATTGCTAAAACCAAA+GGG 0.587457 tig0017934:-22793 Msa1362840:CDS
CAAATATCCGGTCGTAGATG+GGG 0.603716 tig0017934:+22542 None:intergenic
TCTTGAATATAAGTCAAGAT+CGG 0.606815 tig0017934:+23333 None:intergenic
CATGGCATTGCTAAAACCAA+AGG 0.607241 tig0017934:-22794 Msa1362840:CDS
TAAGGGAGCCATCACTGGTG+TGG 0.608663 tig0017934:+21801 None:intergenic
TGAAGCAATGTGATGCCTGA+GGG 0.609507 tig0017934:+22490 None:intergenic
TAGGTGTGGAAGTGGCAGAG+AGG 0.610679 tig0017934:-27226 Msa1362840:CDS
ATCAACAGCGGATATTGAAG+AGG 0.620450 tig0017934:-23133 Msa1362840:CDS
GTAACCAGATTTGGACCTAA+CGG 0.634400 tig0017934:+28098 None:intergenic
CAAGATCGGAAGTGTTGCCG+TGG 0.640514 tig0017934:+23347 None:intergenic
TTGAAGCAATGTGATGCCTG+AGG 0.641335 tig0017934:+22489 None:intergenic
GCAGGAGGTATGTCGAAACC+AGG 0.642425 tig0017934:+22607 None:intergenic
TCTTACATTTATAATCACAA+AGG 0.646420 tig0017934:-22022 Msa1362840:CDS
GAGAAGCAAGTATGATTGTG+CGG 0.648087 tig0017934:+27042 None:intergenic
CTAGTTGCCATTGGACAAGG+TGG 0.650474 tig0017934:-23486 Msa1362840:CDS
GCAATGAAAGCACCTAACAG+AGG 0.656054 tig0017934:+27086 None:intergenic
ATCGTTTGAAGAGAGGCAGG+AGG 0.679134 tig0017934:+22592 None:intergenic
GATGGGGCTAAAGAAAACAA+TGG 0.689663 tig0017934:+22558 None:intergenic
TCCCTTATAAGGTCTAACGA+TGG 0.694307 tig0017934:-21785 Msa1362840:three_prime_UTR
CTGTTCCAATGCGTATATGG+TGG 0.698612 tig0017934:-22351 Msa1362840:CDS
GCGAAACACCTTATCAACAG+CGG 0.714560 tig0017934:-23145 Msa1362840:CDS
GATGGAGTCGTTGACTACAG+AGG 0.727981 tig0017934:-28129 Msa1362840:CDS
GATCAACCCAATAAACAGAG+AGG 0.744196 tig0017934:+21823 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATTAATCCATATTAAAA+TGG + tig0017934:22508-22527 None:intergenic 10.0%
!!! ATTTTGTTTATATTTCATAT+CGG + tig0017934:23549-23568 None:intergenic 10.0%
!!! ATTTATACTATATTTTATTC+CGG - tig0017934:23797-23816 Msa1362840:intron 10.0%
!! CAAAAAAAAAAAAAAAAAAG+TGG + tig0017934:23983-24002 None:intergenic 10.0%
!!! CTTTTTTTTTTTTTTTTTTG+AGG - tig0017934:23983-24002 Msa1362840:intron 10.0%
!! TAATTAATAGTGACAATAAT+TGG - tig0017934:22065-22084 Msa1362840:CDS 15.0%
!! AAGATGATATAAAATTGATT+TGG + tig0017934:22468-22487 None:intergenic 15.0%
!!! TTTTGGTTTTTTTAATTGTT+GGG - tig0017934:22678-22697 Msa1362840:CDS 15.0%
!! ATGTGAAAAGTAAATATATA+GGG + tig0017934:22795-22814 None:intergenic 15.0%
!! AATGTGAAAAGTAAATATAT+AGG + tig0017934:22796-22815 None:intergenic 15.0%
!!! ATATCATATTTTGGAATTAA+GGG - tig0017934:22886-22905 Msa1362840:intron 15.0%
!! CTATAATAATGTTATATTGT+TGG + tig0017934:23431-23450 None:intergenic 15.0%
!! CAACAATATAACATTATTAT+AGG - tig0017934:23429-23448 Msa1362840:CDS 15.0%
!! ATTATAGGAAAATATGTTTA+AGG - tig0017934:23444-23463 Msa1362840:CDS 15.0%
!! TTATAGGAAAATATGTTTAA+GGG - tig0017934:23445-23464 Msa1362840:CDS 15.0%
!!! TTTTGTTTATATTTCATATC+GGG + tig0017934:23548-23567 None:intergenic 15.0%
!!! TTTTTGCAACAAATAATTTA+AGG + tig0017934:24155-24174 None:intergenic 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG + tig0017934:24881-24900 None:intergenic 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG + tig0017934:24984-25003 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG + tig0017934:25008-25027 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG - tig0017934:25007-25026 Msa1362840:intron 15.0%
!! AATGATTAAAAGAAAAAGAA+TGG + tig0017934:25041-25060 None:intergenic 15.0%
!!! GTCACTTATTTTAAAATAAA+AGG - tig0017934:25175-25194 Msa1362840:intron 15.0%
!! AAAAAAAAAAACAATGTAGA+TGG + tig0017934:25301-25320 None:intergenic 15.0%
!! ATGTATGTTTAGAAATTATT+CGG - tig0017934:25524-25543 Msa1362840:intron 15.0%
!! ATAACATAGATAATTAATTG+TGG + tig0017934:26389-26408 None:intergenic 15.0%
!! CAATTAATTATCTATGTTAT+AGG - tig0017934:26389-26408 Msa1362840:intron 15.0%
!! TTTCACATACATTAAAAAAA+AGG - tig0017934:26423-26442 Msa1362840:intron 15.0%
!! TTCACATACATTAAAAAAAA+GGG - tig0017934:26424-26443 Msa1362840:intron 15.0%
!!! TCTTTACTCAATTTTTTTTA+AGG + tig0017934:28219-28238 None:intergenic 15.0%
!! CTTTCTTTCTTTCTTTATTA+AGG + tig0017934:21787-21806 None:intergenic 20.0%
!! AAAGAAGTGAATTATTGAAT+AGG - tig0017934:21881-21900 Msa1362840:three_prime_UTR 20.0%
!! TAACAAAATTTAGTTGAGTT+GGG + tig0017934:22405-22424 None:intergenic 20.0%
!!! ATGATATAAAATTGATTTGG+TGG + tig0017934:22465-22484 None:intergenic 20.0%
!!! TGAATTAGTCCATTTTAATA+TGG - tig0017934:22496-22515 Msa1362840:CDS 20.0%
!!! TTTTGAAAAGTATTTCAAAC+AGG + tig0017934:22582-22601 None:intergenic 20.0%
!!! GTTTTGGTTTTTTTAATTGT+TGG - tig0017934:22677-22696 Msa1362840:CDS 20.0%
!! AATTCTCATCACAATTTAAA+AGG + tig0017934:22819-22838 None:intergenic 20.0%
!!! GATATCATATTTTGGAATTA+AGG - tig0017934:22885-22904 Msa1362840:intron 20.0%
!! TCAATACAAAATGATAACTA+TGG + tig0017934:23355-23374 None:intergenic 20.0%
!! TTTGTTTATATTTCATATCG+GGG + tig0017934:23547-23566 None:intergenic 20.0%
!! GAAATATAAACGTAAAAAGT+AGG + tig0017934:23647-23666 None:intergenic 20.0%
!! TTTACGTTTATATTTCATTC+CGG - tig0017934:23651-23670 Msa1362840:intron 20.0%
!! GAATATTGTATATTATATGC+AGG + tig0017934:24083-24102 None:intergenic 20.0%
!! TGCATTTACAAAACAAAATT+AGG + tig0017934:24216-24235 None:intergenic 20.0%
!! GTAAATGCAAGTAAAAAAAA+AGG - tig0017934:24227-24246 Msa1362840:intron 20.0%
!!! ACATAGTATTTTAATGTGAA+AGG + tig0017934:24280-24299 None:intergenic 20.0%
!! TTCAAAATTGTAGTATTCAA+AGG - tig0017934:24299-24318 Msa1362840:intron 20.0%
!! TGCATTTACAAAACAAAATT+AGG + tig0017934:24216-24235 None:intergenic 20.0%
!! GTAAATGCAAGTAAAAAAAA+AGG - tig0017934:24227-24246 Msa1362840:intron 20.0%
!!! ACATAGTATTTTAATGTGAA+AGG + tig0017934:24280-24299 None:intergenic 20.0%
!! TTCAAAATTGTAGTATTCAA+AGG - tig0017934:24299-24318 Msa1362840:intron 20.0%
!! GAGTATTAATTAAAGACAAA+TGG + tig0017934:24829-24848 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + tig0017934:24921-24940 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG - tig0017934:24998-25017 Msa1362840:intron 20.0%
!!! TTTTTACTTATAACAGTCAT+CGG + tig0017934:25227-25246 None:intergenic 20.0%
!!! AGGTTAATTAGTTTGTTATT+TGG + tig0017934:25463-25482 None:intergenic 20.0%
!!! ATTGGCTTAATATAATTTAC+AGG - tig0017934:26488-26507 Msa1362840:intron 20.0%
!! TTGGCTTAATATAATTTACA+GGG - tig0017934:26489-26508 Msa1362840:intron 20.0%
!! ATATTCAAGATAACTATAGT+TGG - tig0017934:26769-26788 Msa1362840:intron 20.0%
!!! TTTGATTGTATTTTCAACAA+GGG - tig0017934:27260-27279 Msa1362840:intron 20.0%
!!! TCTTTGATAGAATATTTTAG+TGG - tig0017934:27923-27942 Msa1362840:intron 20.0%
!! TCTTACATTTATAATCACAA+AGG - tig0017934:28067-28086 Msa1362840:intron 20.0%
!! AAAAAAATTGAGTAAAGATG+TGG - tig0017934:28221-28240 Msa1362840:five_prime_UTR 20.0%
! TCTTTCTTTCTTTATTAAGG+TGG + tig0017934:21784-21803 None:intergenic 25.0%
!! TATTGAATAGGTTTGTTTGA+TGG - tig0017934:21893-21912 Msa1362840:three_prime_UTR 25.0%
!! TGATTTTCTCAAACTAGTAT+CGG + tig0017934:22157-22176 None:intergenic 25.0%
! GTAACAAAATTTAGTTGAGT+TGG + tig0017934:22406-22425 None:intergenic 25.0%
!! CAATTTTATATCATCTTCTG+CGG - tig0017934:22471-22490 Msa1362840:CDS 25.0%
!!! ATAAGTTTTGAAGAGAGTTT+TGG - tig0017934:22661-22680 Msa1362840:CDS 25.0%
! AATTGTGATGAGAATTGAAA+TGG - tig0017934:22823-22842 Msa1362840:intron 25.0%
! GGATTATGAATGTTATGTTT+AGG - tig0017934:22844-22863 Msa1362840:intron 25.0%
! AACTTGATATCATATCTAAC+AGG - tig0017934:22910-22929 Msa1362840:intron 25.0%
! ACAAAGAAAATAGCATGTTT+CGG + tig0017934:23497-23516 None:intergenic 25.0%
! TTGTTTATATTTCATATCGG+GGG + tig0017934:23546-23565 None:intergenic 25.0%
! TCGATAATTTATACTTCTTC+CGG + tig0017934:23673-23692 None:intergenic 25.0%
! TCGATAATTTATACTTCTTC+CGG + tig0017934:23673-23692 None:intergenic 25.0%
!! GTGTCTTTAAAAAATATCAC+TGG - tig0017934:23956-23975 Msa1362840:intron 25.0%
!!! TATTTTAATGTGAAAGGTCT+AGG + tig0017934:24274-24293 None:intergenic 25.0%
! AAAATTGTAGTATTCAAAGG+AGG - tig0017934:24302-24321 Msa1362840:intron 25.0%
!!! TATTTTAATGTGAAAGGTCT+AGG + tig0017934:24274-24293 None:intergenic 25.0%
! AAAATTGTAGTATTCAAAGG+AGG - tig0017934:24302-24321 Msa1362840:intron 25.0%
!! TGGCTAAAATTCACATTTTA+AGG - tig0017934:25336-25355 Msa1362840:intron 25.0%
! GACATTGCATAATATATGTT+GGG + tig0017934:25397-25416 None:intergenic 25.0%
!!! TTTGTTATTTGGATTTGTCA+AGG + tig0017934:25452-25471 None:intergenic 25.0%
!! TAGAGAATTTGATTTAAGTG+AGG + tig0017934:25483-25502 None:intergenic 25.0%
!! ATCATAATCTGGTGAATTTT+AGG - tig0017934:25964-25983 Msa1362840:intron 25.0%
!! TCATAATCTGGTGAATTTTA+GGG - tig0017934:25965-25984 Msa1362840:intron 25.0%
! GTTAGGATATGTAGAATAAA+GGG + tig0017934:26179-26198 None:intergenic 25.0%
! TGTTAGGATATGTAGAATAA+AGG + tig0017934:26180-26199 None:intergenic 25.0%
! CATTAAATGAGTGATGTATA+TGG - tig0017934:26271-26290 Msa1362840:intron 25.0%
!!! TTTTTGTTTATAACAGTGAC+CGG - tig0017934:26336-26355 Msa1362840:intron 25.0%
! AGTATGATATATCAATCAAG+TGG - tig0017934:26363-26382 Msa1362840:intron 25.0%
! TAATATAATTTACAGGGACT+AGG - tig0017934:26495-26514 Msa1362840:intron 25.0%
!!! TAATTGGTGGTATTTTACTA+TGG - tig0017934:26710-26729 Msa1362840:intron 25.0%
! TCTTGAATATAAGTCAAGAT+CGG + tig0017934:26759-26778 None:intergenic 25.0%
! GACATATAGGTTTAACATTA+AGG - tig0017934:26860-26879 Msa1362840:intron 25.0%
!! TGAATTGTTCAGATTTTTGA+CGG + tig0017934:26995-27014 None:intergenic 25.0%
! CATTCTGTTTATTTCCATTT+GGG + tig0017934:27214-27233 None:intergenic 25.0%
! ACATTCTGTTTATTTCCATT+TGG + tig0017934:27215-27234 None:intergenic 25.0%
!! CTTTGATTGTATTTTCAACA+AGG - tig0017934:27259-27278 Msa1362840:intron 25.0%
!! TAGTCTTTTAATCTCAACAA+AGG + tig0017934:27675-27694 None:intergenic 25.0%
!! ATTCCTCAATATTTTCTGTT+TGG - tig0017934:27764-27783 Msa1362840:intron 25.0%
!!! GAATATTTTAGTGGTAAAGA+TGG - tig0017934:27932-27951 Msa1362840:intron 25.0%
!!! CACATCTTGATTACTTTTAT+TGG - tig0017934:27990-28009 Msa1362840:intron 25.0%
ATACCTATGAAGCACAAATA+CGG - tig0017934:22107-22126 Msa1362840:CDS 30.0%
GATATATAATCGTTTAGCAG+CGG + tig0017934:22314-22333 None:intergenic 30.0%
GCTCTTTGAACTTTGATATT+TGG - tig0017934:22355-22374 Msa1362840:CDS 30.0%
! GAAACAGGTAAATTGTGTTT+TGG - tig0017934:22713-22732 Msa1362840:CDS 30.0%
ATGAATGTTATGTTTAGGTG+TGG - tig0017934:22849-22868 Msa1362840:intron 30.0%
!!! TTCATTGCTGATTCTTTTCT+TGG - tig0017934:23018-23037 Msa1362840:intron 30.0%
TGCTTCTCTTATCTACATAT+TGG - tig0017934:23062-23081 Msa1362840:intron 30.0%
TCTCTTATCTACATATTGGT+TGG - tig0017934:23066-23085 Msa1362840:intron 30.0%
AGTTGAAAAGTCAATGTACA+TGG - tig0017934:23589-23608 Msa1362840:intron 30.0%
!! AGAACTCACACATTTTAATG+TGG - tig0017934:24024-24043 Msa1362840:intron 30.0%
TATATTATATGCAGGAGTTG+GGG + tig0017934:24075-24094 None:intergenic 30.0%
GTATATTATATGCAGGAGTT+GGG + tig0017934:24076-24095 None:intergenic 30.0%
TGTATATTATATGCAGGAGT+TGG + tig0017934:24077-24096 None:intergenic 30.0%
! TTTAAGGCAATGATAACAAG+TGG + tig0017934:24139-24158 None:intergenic 30.0%
TCTATTTGATGAAATTCACG+TGG - tig0017934:24377-24396 Msa1362840:intron 30.0%
CTATTTGATGAAATTCACGT+GGG - tig0017934:24378-24397 Msa1362840:intron 30.0%
TCTATTTGATGAAATTCACG+TGG - tig0017934:24377-24396 Msa1362840:intron 30.0%
CTATTTGATGAAATTCACGT+GGG - tig0017934:24378-24397 Msa1362840:intron 30.0%
! TGGGTATCAAACTTTGAAAA+TGG - tig0017934:24615-24634 Msa1362840:intron 30.0%
CTTTGAATGCAAGAAATGTT+AGG + tig0017934:24724-24743 None:intergenic 30.0%
CAAATGGTCAAGTATATCAA+AGG + tig0017934:24813-24832 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + tig0017934:25089-25108 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG - tig0017934:25090-25109 Msa1362840:intron 30.0%
!!! TTTTTTGTCAAGTAGTCTAG+TGG - tig0017934:25316-25335 Msa1362840:intron 30.0%
!!! GTGAACAAGTGAGTTTTTTA+GGG - tig0017934:25358-25377 Msa1362840:intron 30.0%
CATAATATATGTTGGGATCA+GGG + tig0017934:25390-25409 None:intergenic 30.0%
GGACATTGCATAATATATGT+TGG + tig0017934:25398-25417 None:intergenic 30.0%
! TAAGTTTACCTCAGTTGATA+AGG + tig0017934:25419-25438 None:intergenic 30.0%
CATGTACAATTGTCATGATA+AGG + tig0017934:25849-25868 None:intergenic 30.0%
ATCATGACAATTGTACATGT+TGG - tig0017934:25850-25869 Msa1362840:intron 30.0%
TATCACATGGTTAATAGACT+CGG - tig0017934:26004-26023 Msa1362840:intron 30.0%
! GACAATCAATTTTCTTGTTC+CGG + tig0017934:26069-26088 None:intergenic 30.0%
ATAATGAAAGATCGTGTGTT+AGG + tig0017934:26196-26215 None:intergenic 30.0%
AGCTAATAACAATGACAAGA+GGG + tig0017934:26232-26251 None:intergenic 30.0%
TAGCTAATAACAATGACAAG+AGG + tig0017934:26233-26252 None:intergenic 30.0%
CTAGAAGCTCATTCTTTAAT+TGG - tig0017934:26694-26713 Msa1362840:intron 30.0%
GATAACTATAGTTGGATTCT+TGG - tig0017934:26777-26796 Msa1362840:intron 30.0%
TATAGTTGGATTCTTGGATT+TGG - tig0017934:26783-26802 Msa1362840:intron 30.0%
! AAGAGTCCTTTTCTTAGAAT+CGG - tig0017934:26891-26910 Msa1362840:intron 30.0%
AAATACATCAATGTCCCAAA+TGG - tig0017934:27197-27216 Msa1362840:CDS 30.0%
ATCACATTGCTTCAAAGAAT+TGG - tig0017934:27608-27627 Msa1362840:intron 30.0%
ACTCCAAACAGAAAATATTG+AGG + tig0017934:27770-27789 None:intergenic 30.0%
!!! AGTTTCTGAGGTTTTTACTA+TGG - tig0017934:27787-27806 Msa1362840:intron 30.0%
! TATTTGAGTATTGTTGGTGT+TGG - tig0017934:27875-27894 Msa1362840:intron 30.0%
GTTCTGTGACAATATCAATA+AGG - tig0017934:27967-27986 Msa1362840:intron 30.0%
GCTCAATTAGCTATTGTTGA+TGG - tig0017934:21942-21961 Msa1362840:three_prime_UTR 35.0%
AGATCAGCTTGGTTTATCAT+AGG - tig0017934:22017-22036 Msa1362840:CDS 35.0%
!! TCTCAAACTAGTATCGGTAT+GGG + tig0017934:22151-22170 None:intergenic 35.0%
!! TTCTCAAACTAGTATCGGTA+TGG + tig0017934:22152-22171 None:intergenic 35.0%
GTATGACTCAGATGAAACTT+TGG - tig0017934:22377-22396 Msa1362840:CDS 35.0%
GGGAACTAAAAAACTGAAAC+AGG - tig0017934:22698-22717 Msa1362840:CDS 35.0%
! GCAGAGAGGATATCATATTT+TGG - tig0017934:22877-22896 Msa1362840:intron 35.0%
CTGCTAAGAATGTCAATGTT+TGG - tig0017934:22959-22978 Msa1362840:intron 35.0%
AAGAATGTCAATGTTTGGTC+TGG - tig0017934:22964-22983 Msa1362840:intron 35.0%
!! CACATTTTAATGTGGAGAAG+TGG - tig0017934:24032-24051 Msa1362840:intron 35.0%
!! ACTAGAGAGTGTTAGAAAGA+AGG + tig0017934:24341-24360 None:intergenic 35.0%
!! ACTAGAGAGTGTTAGAAAGA+AGG + tig0017934:24341-24360 None:intergenic 35.0%
TACGTCTAACGACTTTATGT+GGG + tig0017934:24643-24662 None:intergenic 35.0%
ATAAAGTCGTTAGACGTACA+TGG - tig0017934:24645-24664 Msa1362840:intron 35.0%
! TCGACAATGTCACCTATTTT+GGG + tig0017934:24759-24778 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + tig0017934:24855-24874 None:intergenic 35.0%
! TGTGCAGAGTATTAATTGGA+GGG + tig0017934:24955-24974 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG + tig0017934:24959-24978 None:intergenic 35.0%
GAGGGAGTAGTAGAAAAATA+TGG - tig0017934:25112-25131 Msa1362840:intron 35.0%
TACTTATAACAGTCATCGGA+GGG + tig0017934:25223-25242 None:intergenic 35.0%
TTACTTATAACAGTCATCGG+AGG + tig0017934:25224-25243 None:intergenic 35.0%
!!! GGTGAACAAGTGAGTTTTTT+AGG - tig0017934:25357-25376 Msa1362840:intron 35.0%
GCATAATATATGTTGGGATC+AGG + tig0017934:25391-25410 None:intergenic 35.0%
! ATTATTCGGTTTGACCTAAG+AGG - tig0017934:25538-25557 Msa1362840:intron 35.0%
CTGAGATGATAACTTTAGTG+AGG - tig0017934:25643-25662 Msa1362840:intron 35.0%
GATGATAACTTTAGTGAGGT+TGG - tig0017934:25647-25666 Msa1362840:intron 35.0%
CTAAGGCCTAGGTATATATA+GGG - tig0017934:25799-25818 Msa1362840:intron 35.0%
CCTAAACCCTATATATACCT+AGG + tig0017934:25808-25827 None:intergenic 35.0%
CCTAGGTATATATAGGGTTT+AGG - tig0017934:25805-25824 Msa1362840:intron 35.0%
TATAGGGTTTAGGTACAACT+TGG - tig0017934:25815-25834 Msa1362840:intron 35.0%
GACAATTGTACATGTTGGTA+CGG - tig0017934:25855-25874 Msa1362840:intron 35.0%
AATTCACCAGATTATGATGC+AGG + tig0017934:25962-25981 None:intergenic 35.0%
ATCACATGGTTAATAGACTC+GGG - tig0017934:26005-26024 Msa1362840:intron 35.0%
AATGTGAGATCTTGTGTTGA+GGG + tig0017934:26151-26170 None:intergenic 35.0%
TAATGTGAGATCTTGTGTTG+AGG + tig0017934:26152-26171 None:intergenic 35.0%
TTGATATATCATACTGCCTC+CGG + tig0017934:26358-26377 None:intergenic 35.0%
CATCAAAACATGAGCCAATA+TGG + tig0017934:26462-26481 None:intergenic 35.0%
!!! ATTGGCTCATGTTTTGATGT+TGG - tig0017934:26463-26482 Msa1362840:intron 35.0%
!!! CATGTTTTGATGTTGGTCAT+TGG - tig0017934:26470-26489 Msa1362840:intron 35.0%
! AAACCTTGTGTTCAAGCTTT+TGG - tig0017934:26630-26649 Msa1362840:intron 35.0%
! AACCTTGTGTTCAAGCTTTT+GGG - tig0017934:26631-26650 Msa1362840:intron 35.0%
GAAGCTCATTCTTTAATTGG+TGG - tig0017934:26697-26716 Msa1362840:intron 35.0%
! TGGTATTTTACTATGGTTGC+AGG - tig0017934:26717-26736 Msa1362840:intron 35.0%
! GCTTTGATTGTTTTCTTGCT+TGG - tig0017934:26831-26850 Msa1362840:intron 35.0%
! TTGTTTTCTTGCTTGGAACA+AGG - tig0017934:26838-26857 Msa1362840:intron 35.0%
TTCAATATCCGCTGTTGATA+AGG + tig0017934:26955-26974 None:intergenic 35.0%
! ATTGTATTTTCAACAAGGGC+AGG - tig0017934:27264-27283 Msa1362840:intron 35.0%
ATGGCATTGCTAAAACCAAA+GGG - tig0017934:27296-27315 Msa1362840:intron 35.0%
! TACTAAGGTTGGTTCCAATT+TGG - tig0017934:27372-27391 Msa1362840:intron 35.0%
! ACTAAGGTTGGTTCCAATTT+GGG - tig0017934:27373-27392 Msa1362840:intron 35.0%
ATGCAGAAAACAATAGTTCC+TGG - tig0017934:27464-27483 Msa1362840:intron 35.0%
ATTGGTTATCGTTTGAAGAG+AGG + tig0017934:27507-27526 None:intergenic 35.0%
AAAGAAAACAATGGCGACAT+TGG + tig0017934:27525-27544 None:intergenic 35.0%
CTAAAAATAGCACAAGAGCA+TGG - tig0017934:27692-27711 Msa1362840:intron 35.0%
!! TTTTCTGTTTGGAGTTTCTG+AGG - tig0017934:27775-27794 Msa1362840:intron 35.0%
!! TCTGAGGTTTTTACTATGGT+TGG - tig0017934:27791-27810 Msa1362840:intron 35.0%
!!! TTTTACTATGGTTGGTCTTC+AGG - tig0017934:27799-27818 Msa1362840:intron 35.0%
CCATGCTTCTTAGTTCATTT+GGG + tig0017934:27844-27863 None:intergenic 35.0%
! CCAAATGAACTAAGAAGCAT+GGG - tig0017934:27842-27861 Msa1362840:intron 35.0%
! GCACTCTATTTGAGTATTGT+TGG - tig0017934:27869-27888 Msa1362840:intron 35.0%
GTAAAGATGGTCATGAAAGT+TGG - tig0017934:27945-27964 Msa1362840:intron 35.0%
!! TACTTTTATTGGCTACTTGC+TGG - tig0017934:28001-28020 Msa1362840:intron 35.0%
!! CACAAAGGTATCATCTCATA+AGG - tig0017934:28082-28101 Msa1362840:CDS 35.0%
ACAAAATTCTAACACGTGCT+TGG + tig0017934:28170-28189 None:intergenic 35.0%
! TCTAGTTCCTCTCTGTTTAT+TGG - tig0017934:28259-28278 Msa1362840:five_prime_UTR 35.0%
CTAGTTCCTCTCTGTTTATT+GGG - tig0017934:28260-28279 Msa1362840:five_prime_UTR 35.0%
ACCATCGTTAGACCTTATAA+GGG + tig0017934:28308-28327 None:intergenic 35.0%
TACCATCGTTAGACCTTATA+AGG + tig0017934:28309-28328 None:intergenic 35.0%
AGCTTCTAACAACACTTCGT+TGG + tig0017934:21925-21944 None:intergenic 40.0%
GTAACCAGATTTGGACCTAA+CGG + tig0017934:21994-22013 None:intergenic 40.0%
TTAGGTCCAAATCTGGTTAC+TGG - tig0017934:21994-22013 Msa1362840:exon 40.0%
TGATCTCCAGTAACCAGATT+TGG + tig0017934:22003-22022 None:intergenic 40.0%
CAACCGTATTTGTGCTTCAT+AGG + tig0017934:22113-22132 None:intergenic 40.0%
TGAAGCACAAATACGGTTGT+TGG - tig0017934:22114-22133 Msa1362840:CDS 40.0%
ATATAATCGTTTAGCAGCGG+CGG + tig0017934:22311-22330 None:intergenic 40.0%
!! GATTCTAGTTCCTAACACAC+TGG - tig0017934:22539-22558 Msa1362840:CDS 40.0%
ACACTGGAAAGTGGACAATA+TGG - tig0017934:22555-22574 Msa1362840:CDS 40.0%
CACTGGAAAGTGGACAATAT+GGG - tig0017934:22556-22575 Msa1362840:CDS 40.0%
GTTATGTTTAGGTGTGGAAG+TGG - tig0017934:22855-22874 Msa1362840:intron 40.0%
GAGAAGCAAGTATGATTGTG+CGG + tig0017934:23050-23069 None:intergenic 40.0%
GTACGTCTAACGACTTTATG+TGG + tig0017934:24644-24663 None:intergenic 40.0%
!! CAATGTCACCTATTTTGGGA+CGG + tig0017934:24755-24774 None:intergenic 40.0%
! GTCGACAATGTCACCTATTT+TGG + tig0017934:24760-24779 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + tig0017934:25094-25113 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG + tig0017934:24956-24975 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - tig0017934:25094-25113 Msa1362840:intron 40.0%
TGCAATGTCCTTATCAACTG+AGG - tig0017934:25408-25427 Msa1362840:intron 40.0%
GCAAACGACGAATAGATCAA+CGG + tig0017934:25604-25623 None:intergenic 40.0%
CATGAACCTCTCACTTACTT+GGG + tig0017934:25731-25750 None:intergenic 40.0%
TCATGAACCTCTCACTTACT+TGG + tig0017934:25732-25751 None:intergenic 40.0%
AAGTAAGTGAGAGGTTCATG+AGG - tig0017934:25731-25750 Msa1362840:intron 40.0%
GCTAAGGCCTAGGTATATAT+AGG - tig0017934:25798-25817 Msa1362840:intron 40.0%
TTGTTTATAACAGTGACCGG+AGG - tig0017934:26339-26358 Msa1362840:intron 40.0%
GGATAGACAGATAGCCATAT+TGG - tig0017934:26445-26464 Msa1362840:intron 40.0%
GTAGAACAAGATGTGAGTGA+AGG + tig0017934:26546-26565 None:intergenic 40.0%
TCACTCTATCTAGTTGCCAT+TGG - tig0017934:26594-26613 Msa1362840:intron 40.0%
TATCTAGTTGCCATTGGACA+AGG - tig0017934:26600-26619 Msa1362840:intron 40.0%
TTTATGTCCACCTTGTCCAA+TGG + tig0017934:26613-26632 None:intergenic 40.0%
! ACCTTGTGTTCAAGCTTTTG+GGG - tig0017934:26632-26651 Msa1362840:intron 40.0%
ATTCGACGAAAAATATCCCG+AGG - tig0017934:26662-26681 Msa1362840:intron 40.0%
TGCTTGGAACAAGGACATAT+AGG - tig0017934:26847-26866 Msa1362840:intron 40.0%
TTACAGCTGCAACGAATACA+CGG + tig0017934:26917-26936 None:intergenic 40.0%
TCGTTGCAGCTGTAAGAAAT+TGG - tig0017934:26922-26941 Msa1362840:intron 40.0%
ATCAACAGCGGATATTGAAG+AGG - tig0017934:26956-26975 Msa1362840:intron 40.0%
!! GTTTTAGCAATGCCATGTTG+AGG + tig0017934:27292-27311 None:intergenic 40.0%
CATGGCATTGCTAAAACCAA+AGG - tig0017934:27295-27314 Msa1362840:intron 40.0%
ACTACAAGTCTCGTCTTCTT+TGG + tig0017934:27324-27343 None:intergenic 40.0%
AAGAAGCAAAGGCAGTACTA+AGG - tig0017934:27357-27376 Msa1362840:intron 40.0%
TCCAATTTGGGCTACAACTT+TGG - tig0017934:27385-27404 Msa1362840:intron 40.0%
ACCAAAGTTGTAGCCCAAAT+TGG + tig0017934:27389-27408 None:intergenic 40.0%
! TGGGCTACAACTTTGGTTTA+TGG - tig0017934:27392-27411 Msa1362840:intron 40.0%
TCTACATTCTTCACCAAGCA+AGG - tig0017934:27434-27453 Msa1362840:intron 40.0%
CTACATTCTTCACCAAGCAA+GGG - tig0017934:27435-27454 Msa1362840:intron 40.0%
GATGGGGCTAAAGAAAACAA+TGG + tig0017934:27534-27553 None:intergenic 40.0%
ACAAATATCCGGTCGTAGAT+GGG + tig0017934:27551-27570 None:intergenic 40.0%
TTGCTAGTGGCACAAATATC+CGG + tig0017934:27562-27581 None:intergenic 40.0%
CCAGTGATAATTCTTGCTAG+TGG + tig0017934:27575-27594 None:intergenic 40.0%
CCACTAGCAAGAATTATCAC+TGG - tig0017934:27572-27591 Msa1362840:intron 40.0%
ATTATCACTGGAAAACCCTC+AGG - tig0017934:27584-27603 Msa1362840:intron 40.0%
TTGCTTCAAAGAATTGGCAC+TGG - tig0017934:27614-27633 Msa1362840:intron 40.0%
CAACTGTTCCAATGCGTATA+TGG - tig0017934:27735-27754 Msa1362840:intron 40.0%
ATCAACCACCATATACGCAT+TGG + tig0017934:27746-27765 None:intergenic 40.0%
CCCAAATGAACTAAGAAGCA+TGG - tig0017934:27841-27860 Msa1362840:intron 40.0%
CCCATGCTTCTTAGTTCATT+TGG + tig0017934:27845-27864 None:intergenic 40.0%
! ACTTGCTGGATTAAGTGTCA+TGG - tig0017934:28015-28034 Msa1362840:intron 40.0%
CTTGCTGGATTAAGTGTCAT+GGG - tig0017934:28016-28035 Msa1362840:intron 40.0%
TTGCTGGATTAAGTGTCATG+GGG - tig0017934:28017-28036 Msa1362840:intron 40.0%
GATCAACCCAATAAACAGAG+AGG + tig0017934:28269-28288 None:intergenic 40.0%
TCCCTTATAAGGTCTAACGA+TGG - tig0017934:28304-28323 Msa1362840:five_prime_UTR 40.0%
AATGAAGCACATCCACTCCT+CGG + tig0017934:22250-22269 None:intergenic 45.0%
GTTCCTAACACACTGGAAAG+TGG - tig0017934:22546-22565 Msa1362840:CDS 45.0%
TGTCCACTTTCCAGTGTGTT+AGG + tig0017934:22552-22571 None:intergenic 45.0%
!! GTTGCAGTGCTTTGTTTGAG+TGG + tig0017934:22937-22956 None:intergenic 45.0%
GCTTCTCTACTTCCTCTGTT+AGG - tig0017934:22991-23010 Msa1362840:intron 45.0%
!! GCAATGAAAGCACCTAACAG+AGG + tig0017934:23006-23025 None:intergenic 45.0%
! TTTGAGGTCAAGTAGCCTAG+TGG - tig0017934:23999-24018 Msa1362840:intron 45.0%
! ATGTGTGAGTTCTAGCCACT+AGG + tig0017934:24017-24036 None:intergenic 45.0%
TACCAACTGAGCTAAGCTCA+CGG - tig0017934:24104-24123 Msa1362840:intron 45.0%
ATACCACTCCGTCCCAAAAT+AGG - tig0017934:24744-24763 Msa1362840:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + tig0017934:25093-25112 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - tig0017934:25093-25112 Msa1362840:intron 45.0%
! TTCGGTTTGACCTAAGAGGA+TGG - tig0017934:25542-25561 Msa1362840:intron 45.0%
AGTAGCTCAACCATCCTCTT+AGG + tig0017934:25555-25574 None:intergenic 45.0%
AAGAGGATGGTTGAGCTACT+TGG - tig0017934:25555-25574 Msa1362840:intron 45.0%
!! AACGGATTAACCCCAACAGA+CGG + tig0017934:25586-25605 None:intergenic 45.0%
TGATCTATTCGTCGTTTGCC+TGG - tig0017934:25605-25624 Msa1362840:intron 45.0%
TATTCGTCGTTTGCCTGGTT+CGG - tig0017934:25610-25629 Msa1362840:intron 45.0%
! GAAGTGTCATACCTGACCTA+AGG - tig0017934:25776-25795 Msa1362840:intron 45.0%
TCATACCTGACCTAAGGCTA+AGG - tig0017934:25782-25801 Msa1362840:intron 45.0%
! TATACCTAGGCCTTAGCCTT+AGG + tig0017934:25795-25814 None:intergenic 45.0%
TGTACATGTTGGTACGGATG+TGG - tig0017934:25861-25880 Msa1362840:intron 45.0%
GTACATGTTGGTACGGATGT+GGG - tig0017934:25862-25881 Msa1362840:intron 45.0%
CATGGTTAATAGACTCGGGT+CGG - tig0017934:26009-26028 Msa1362840:intron 45.0%
!! TTGTGTTCAAGCTTTTGGGG+CGG - tig0017934:26635-26654 Msa1362840:intron 45.0%
! CTTCTAGCTATATGCTCCTC+GGG + tig0017934:26681-26700 None:intergenic 45.0%
! GCTTCTAGCTATATGCTCCT+CGG + tig0017934:26682-26701 None:intergenic 45.0%
! ACACGGCCGATTCTAAGAAA+AGG + tig0017934:26900-26919 None:intergenic 45.0%
GCGAAACACCTTATCAACAG+CGG - tig0017934:26944-26963 Msa1362840:intron 45.0%
ACAGCGGATATTGAAGAGGA+TGG - tig0017934:26960-26979 Msa1362840:intron 45.0%
TCGTCTTCTTTGGATCCCTT+TGG + tig0017934:27314-27333 None:intergenic 45.0%
CAGTGAGATCGAAGAAGCAA+AGG - tig0017934:27346-27365 Msa1362840:intron 45.0%
AGCAAAGGCAGTACTAAGGT+TGG - tig0017934:27361-27380 Msa1362840:intron 45.0%
GTTATCGTTTGAAGAGAGGC+AGG + tig0017934:27503-27522 None:intergenic 45.0%
CAAATATCCGGTCGTAGATG+GGG + tig0017934:27550-27569 None:intergenic 45.0%
CACAAATATCCGGTCGTAGA+TGG + tig0017934:27552-27571 None:intergenic 45.0%
TGAAGCAATGTGATGCCTGA+GGG + tig0017934:27602-27621 None:intergenic 45.0%
TTGAAGCAATGTGATGCCTG+AGG + tig0017934:27603-27622 None:intergenic 45.0%
CGCATTGGAACAGTTGCATT+TGG + tig0017934:27731-27750 None:intergenic 45.0%
CTGTTCCAATGCGTATATGG+TGG - tig0017934:27738-27757 Msa1362840:intron 45.0%
! GGTGTTGGAAGCTTTCTAAG+TGG - tig0017934:27890-27909 Msa1362840:intron 45.0%
!!! TAAATAAAGATTTATTTTTT+TGG - tig0017934:23721-23740 Msa1362840:intron 5.0%
!!! TAAATAAAGATTTATTTTTT+TGG - tig0017934:23721-23740 Msa1362840:intron 5.0%
! GATGGAGTCGTTGACTACAG+AGG - tig0017934:21960-21979 Msa1362840:three_prime_UTR 50.0%
CTGGTTACTGGAGATCAGCT+TGG - tig0017934:22006-22025 Msa1362840:exon 50.0%
ACCAATGCGTGTCCAACATC+AGG - tig0017934:22213-22232 Msa1362840:CDS 50.0%
TCCTGATGTTGGACACGCAT+TGG + tig0017934:22217-22236 None:intergenic 50.0%
GATAAGGCGTGTCCTGATGT+TGG + tig0017934:22228-22247 None:intergenic 50.0%
! ATGTGGAGAAGTGGAGTGTC+CGG - tig0017934:24041-24060 Msa1362840:intron 50.0%
AGGAGTTGGGGTTTGAATCC+CGG + tig0017934:24063-24082 None:intergenic 50.0%
GTGAGCTTAGCTCAGTTGGT+AGG + tig0017934:24105-24124 None:intergenic 50.0%
!!! TCACCTATTTTGGGACGGAG+TGG + tig0017934:24750-24769 None:intergenic 50.0%
!! TACTTGGTTCTGCCGTCTGT+TGG - tig0017934:25571-25590 Msa1362840:intron 50.0%
!! ACTTGGTTCTGCCGTCTGTT+GGG - tig0017934:25572-25591 Msa1362840:intron 50.0%
TCAGTCCCTGGTAGAGACAA+AGG - tig0017934:25677-25696 Msa1362840:intron 50.0%
CAGTCCCTGGTAGAGACAAA+GGG - tig0017934:25678-25697 Msa1362840:intron 50.0%
AGTCCCTGGTAGAGACAAAG+GGG - tig0017934:25679-25698 Msa1362840:intron 50.0%
AACCCCCTTTGTCTCTACCA+GGG + tig0017934:25685-25704 None:intergenic 50.0%
AGTGAGAGGTTCATGAGGAG+AGG - tig0017934:25736-25755 Msa1362840:intron 50.0%
GGGTTTAGGTACAACTTGGC+TGG - tig0017934:25819-25838 Msa1362840:intron 50.0%
ATGTGGGTAACCCTTAGTCC+TGG - tig0017934:25878-25897 Msa1362840:intron 50.0%
TGTGGGTAACCCTTAGTCCT+GGG - tig0017934:25879-25898 Msa1362840:intron 50.0%
CAGATTATGATGCAGGCCGA+GGG + tig0017934:25955-25974 None:intergenic 50.0%
! TTTAGGGTGTGCTCGTCGTA+TGG - tig0017934:25981-26000 Msa1362840:intron 50.0%
GCTCGTCGTATGGTATCACA+TGG - tig0017934:25991-26010 Msa1362840:intron 50.0%
GATCTGAGCGGAATCGGATT+GGG - tig0017934:26031-26050 Msa1362840:intron 50.0%
TCTTGTTCCGGACTGAGCTA+AGG + tig0017934:26057-26076 None:intergenic 50.0%
CTAGTTGCCATTGGACAAGG+TGG - tig0017934:26603-26622 Msa1362840:intron 50.0%
GCCCCAAAAGCTTGAACACA+AGG + tig0017934:26636-26655 None:intergenic 50.0%
TACTATGGTTGCAGGTGCCA+CGG - tig0017934:26725-26744 Msa1362840:intron 50.0%
CTGCATAGAACTCCCTTGCT+TGG + tig0017934:27450-27469 None:intergenic 50.0%
ATCGTTTGAAGAGAGGCAGG+AGG + tig0017934:27500-27519 None:intergenic 50.0%
TCTTTAGCCCCATCTACGAC+CGG - tig0017934:27540-27559 Msa1362840:intron 50.0%
CCTTATAAGGGAGCCATCAC+TGG + tig0017934:28296-28315 None:intergenic 50.0%
CCAGTGATGGCTCCCTTATA+AGG - tig0017934:28293-28312 Msa1362840:five_prime_UTR 50.0%
ACAGAGGACAACCTGCCGTT+AGG - tig0017934:21976-21995 Msa1362840:three_prime_UTR 55.0%
CCAGATTTGGACCTAACGGC+AGG + tig0017934:21990-22009 None:intergenic 55.0%
CCTGCCGTTAGGTCCAAATC+TGG - tig0017934:21987-22006 Msa1362840:three_prime_UTR 55.0%
ATCAGGACACGCCTTATCCG+AGG - tig0017934:22230-22249 Msa1362840:CDS 55.0%
GCACATCCACTCCTCGGATA+AGG + tig0017934:22244-22263 None:intergenic 55.0%
TAGGTGTGGAAGTGGCAGAG+AGG - tig0017934:22863-22882 Msa1362840:intron 55.0%
! TGTGGAGAAGTGGAGTGTCC+GGG - tig0017934:24042-24061 Msa1362840:intron 55.0%
!! CTTGGTTCTGCCGTCTGTTG+GGG - tig0017934:25573-25592 Msa1362840:intron 55.0%
CAGCACTGTTCAACCGAACC+AGG + tig0017934:25626-25645 None:intergenic 55.0%
GTTGGTTGATCGTCAGTCCC+TGG - tig0017934:25665-25684 Msa1362840:intron 55.0%
GTCCCTGGTAGAGACAAAGG+GGG - tig0017934:25680-25699 Msa1362840:intron 55.0%
CAACCCCCTTTGTCTCTACC+AGG + tig0017934:25686-25705 None:intergenic 55.0%
GGTAGAGACAAAGGGGGTTG+TGG - tig0017934:25686-25705 Msa1362840:intron 55.0%
CCTCTCACTTACTTGGGCGT+CGG + tig0017934:25725-25744 None:intergenic 55.0%
!! CTAGGCCTTAGCCTTAGGTC+AGG + tig0017934:25790-25809 None:intergenic 55.0%
CTGACCTAAGGCTAAGGCCT+AGG - tig0017934:25788-25807 Msa1362840:intron 55.0%
GTGGGTAACCCTTAGTCCTG+GGG - tig0017934:25880-25899 Msa1362840:intron 55.0%
AGGTAGCTCCCCAGGACTAA+GGG + tig0017934:25891-25910 None:intergenic 55.0%
AAGGTAGCTCCCCAGGACTA+AGG + tig0017934:25892-25911 None:intergenic 55.0%
TAGTCCTGGGGAGCTACCTT+CGG - tig0017934:25892-25911 Msa1362840:intron 55.0%
CCAGATTATGATGCAGGCCG+AGG + tig0017934:25956-25975 None:intergenic 55.0%
CCTCGGCCTGCATCATAATC+TGG - tig0017934:25953-25972 Msa1362840:intron 55.0%
GGATCTGAGCGGAATCGGAT+TGG - tig0017934:26030-26049 Msa1362840:intron 55.0%
GATTGGGCCTTAGCTCAGTC+CGG - tig0017934:26047-26066 Msa1362840:intron 55.0%
!! CAAGATCGGAAGTGTTGCCG+TGG + tig0017934:26745-26764 None:intergenic 55.0%
CAAGGGCAGGTTCCTCAACA+TGG - tig0017934:27277-27296 Msa1362840:intron 55.0%
! GCAGGAGGTATGTCGAAACC+AGG + tig0017934:27485-27504 None:intergenic 55.0%
! GGGTTGATCCACACCAGTGA+TGG - tig0017934:28280-28299 Msa1362840:five_prime_UTR 55.0%
TAAGGGAGCCATCACTGGTG+TGG + tig0017934:28291-28310 None:intergenic 55.0%
GACACGCCTTATCCGAGGAG+TGG - tig0017934:22235-22254 Msa1362840:CDS 60.0%
CGCCGTGAGCTTAGCTCAGT+TGG + tig0017934:24109-24128 None:intergenic 60.0%
CCGACGCCCAAGTAAGTGAG+AGG - tig0017934:25722-25741 Msa1362840:intron 60.0%
CGTGGTCAACCCTCGAACCT+CGG - tig0017934:25925-25944 Msa1362840:intron 60.0%
GTGGTCAACCCTCGAACCTC+GGG - tig0017934:25926-25945 Msa1362840:intron 60.0%
GAGGGTTACCCGAGGTTCGA+GGG + tig0017934:25937-25956 None:intergenic 60.0%
CTCGAACCTCGGGTAACCCT+CGG - tig0017934:25936-25955 Msa1362840:intron 60.0%
AGACTCGGGTCGGATCTGAG+CGG - tig0017934:26019-26038 Msa1362840:intron 60.0%
GGGTCGGATCTGAGCGGAAT+CGG - tig0017934:26025-26044 Msa1362840:intron 60.0%
CGTTTAGCAGCGGCGGCTGT+AGG + tig0017934:22304-22323 None:intergenic 65.0%
AGGGTTGACCACGCTCACGC+AGG + tig0017934:25918-25937 None:intergenic 65.0%
CGAGGGTTACCCGAGGTTCG+AGG + tig0017934:25938-25957 None:intergenic 65.0%
CAGGCCGAAGGTAGCTCCCC+AGG + tig0017934:25899-25918 None:intergenic 70.0%
ACCTTCGGCCTGCGTGAGCG+TGG - tig0017934:25907-25926 Msa1362840:intron 70.0%
ACCACGCTCACGCAGGCCGA+AGG + tig0017934:25911-25930 None:intergenic 70.0%
TGCAGGCCGAGGGTTACCCG+AGG + tig0017934:25945-25964 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0017934 gene 21770 28341 21770 ID=Msa1362840;Name=Msa1362840
tig0017934 mRNA 21770 28341 21770 ID=Msa1362840-mRNA-1;Parent=Msa1362840;Name=Msa1362840-mRNA-1;_AED=0.29;_eAED=0.29;_QI=142|1|1|1|1|0.75|4|239|555
tig0017934 exon 21770 22825 21770 ID=Msa1362840-mRNA-1:exon:13269;Parent=Msa1362840-mRNA-1
tig0017934 exon 23096 23601 23096 ID=Msa1362840-mRNA-1:exon:13268;Parent=Msa1362840-mRNA-1
tig0017934 exon 27028 27245 27028 ID=Msa1362840-mRNA-1:exon:13267;Parent=Msa1362840-mRNA-1
tig0017934 exon 28073 28341 28073 ID=Msa1362840-mRNA-1:exon:13266;Parent=Msa1362840-mRNA-1
tig0017934 five_prime_UTR 28200 28341 28200 ID=Msa1362840-mRNA-1:five_prime_utr;Parent=Msa1362840-mRNA-1
tig0017934 CDS 28073 28199 28073 ID=Msa1362840-mRNA-1:cds;Parent=Msa1362840-mRNA-1
tig0017934 CDS 27028 27245 27028 ID=Msa1362840-mRNA-1:cds;Parent=Msa1362840-mRNA-1
tig0017934 CDS 23096 23601 23096 ID=Msa1362840-mRNA-1:cds;Parent=Msa1362840-mRNA-1
tig0017934 CDS 22009 22825 22009 ID=Msa1362840-mRNA-1:cds;Parent=Msa1362840-mRNA-1
tig0017934 three_prime_UTR 21770 22008 21770 ID=Msa1362840-mRNA-1:three_prime_utr;Parent=Msa1362840-mRNA-1
Gene Sequence

>Msa1362840

ATGGCAGAATCCAACGAAGTGTTGTTAGAAGCTCAATTAGCTATTGTTGATGGAGTCGTTGACTACAGAGGACAACCTGCCGTTAGGTCCAAATCTGGTTACTGGAGATCAGCTTGGTTTATCATAGGTGTGGAAGTGGCAGAGAGGATATCATATTTTGGAATTAAGGGAAACTTGATATCATATCTAACAGGACCACTCAAACAAAGCACTGCAACAGCTGCTAAGAATGTCAATGTTTGGTCTGGAACAGCTTCTCTACTTCCTCTGTTAGGTGCTTTCATTGCTGATTCTTTTCTTGGACGCTACCGCACAATCATACTTGCTTCTCTTATCTACATATTGGGACTAGGCTTGTTAACATTTTCAACTATGCTTCCTTCACTCACATCTTGTTCTACTCAATCACAAGTAATCTTATTCTTCATCTCACTCTATCTAGTTGCCATTGGACAAGGTGGACATAAACCTTGTGTTCAAGCTTTTGGGGCGGATCAATTCGACGAAAAATATCCCGAGGAGCATATAGCTAGAAGCTCATTCTTTAATTGGTGGTATTTTACTATGGTTGCAGGTGCCACGGCAACACTTCCGATCTTGACTTATATTCAAGATAACTATAGTTGGATTCTTGGATTTGGAATCTCTTGTGTTGTAATGATCATTGCTTTGATTGTTTTCTTGCTTGGAACAAGGACATATAGGTTTAACATTAAGGATAATAATAAGAGTCCTTTTCTTAGAATCGGCCGTGTATTCGTTGCAGCTGTAAGAAATTGGCGAAACACCTTATCAACAGCGGATATTGAAGAGGATGGACTACTTCGCCGTCAAAAATCTGAACAATTCAAGTTCCTCAACATGGCATTGCTAAAACCAAAGGGATCCAAAGAAGACGAGACTTGTAGTCACAGTGAGATCGAAGAAGCAAAGGCAGTACTAAGGTTGGTTCCAATTTGGGCTACAACTTTGGTTTATGGCATTGTCTTTGCTCAAGTTTCTACATTCTTCACCAAGCAAGGGAGTTCTATGCAGAAAACAATAGTTCCTGGTTTCGACATACCTCCTGCCTCTCTTCAAACGATAACCAATGTCGCCATTGTTTTCTTTAGCCCCATCTACGACCGGATATTTGTGCCACTAGCAAGAATTATCACTGGAAAACCCTCAGGCATCACATTGCTTCAAAGAATTGGCACTGGAATTTTCATATCAATATTCACAGTAGTATTTGCAGCCTTTGTTGAGATTAAAAGACTAAAAATAGCACAAGAGCATGGTCTTGTTGATGATCCAAATGCAACTGTTCCAATGCGTATATGGTGGTTGATTCCTCAATATTTTCTGTTTGGAGTTTCTGAGGTTTTTACTATGGTTGGTCTTCAGGAATTTTTCTATGATCAAGTCCCAAATGAACTAAGAAGCATGGGACTTGCACTCTATTTGAGTATTGTTGGTGTTGGAAGCTTTCTAAGTGGCTTTCTCATTTCTTTGATAGAATATTTTAGTGGTAAAGATGGTCATGAAAGTTGGTTCTGTGACAATATCAATAAGGCACATCTTGATTACTTTTATTGGCTACTTGCTGGATTAAGTGTCATGGGGTTTACTTTGTTCGTTTACTTTGCAAAATCTTACATTTATAATCACAAAGGTATCATCTCATAA
Protein sequence

>Msa1362840

MAESNEVLLEAQLAIVDGVVDYRGQPAVRSKSGYWRSAWFIIGVEVAERISYFGIKGNLISYLTGPLKQSTATAAKNVNVWSGTASLLPLLGAFIADSFLGRYRTIILASLIYILGLGLLTFSTMLPSLTSCSTQSQVILFFISLYLVAIGQGGHKPCVQAFGADQFDEKYPEEHIARSSFFNWWYFTMVAGATATLPILTYIQDNYSWILGFGISCVVMIIALIVFLLGTRTYRFNIKDNNKSPFLRIGRVFVAAVRNWRNTLSTADIEEDGLLRRQKSEQFKFLNMALLKPKGSKEDETCSHSEIEEAKAVLRLVPIWATTLVYGIVFAQVSTFFTKQGSSMQKTIVPGFDIPPASLQTITNVAIVFFSPIYDRIFVPLARIITGKPSGITLLQRIGTGIFISIFTVVFAAFVEIKRLKIAQEHGLVDDPNATVPMRIWWLIPQYFLFGVSEVFTMVGLQEFFYDQVPNELRSMGLALYLSIVGVGSFLSGFLISLIEYFSGKDGHESWFCDNINKAHLDYFYWLLAGLSVMGFTLFVYFAKSYIYNHKGIIS*