Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0597510 | XP_013455479.1 | 78.682 | 258 | 13 | 4 | 1 | 217 | 1 | 257 | 5.29e-116 | 341 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0597510 | sp|P31230|AIMP1_MOUSE | 44.444 | 135 | 48 | 1 | 85 | 192 | 150 | 284 | 1.23e-29 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0597510 | A0A072UUH4 | 78.682 | 258 | 13 | 4 | 1 | 217 | 1 | 257 | 2.53e-116 | 341 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0088160 | Msa0597510 | 0.822347 | 2.486342e-53 | -8.615850e-47 |
| Msa0135200 | Msa0597510 | 0.822321 | 2.521746e-53 | -8.615850e-47 |
| Msa0597510 | Msa0641440 | 0.814639 | 1.390554e-51 | -8.615850e-47 |
| Msa0597510 | Msa0667650 | 0.830281 | 3.208345e-55 | -8.615850e-47 |
| Msa0597510 | Msa1030420 | 0.813404 | 2.604019e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0597510 | MtrunA17_Chr4g0019821 | 78.682 | 258 | 13 | 4 | 1 | 217 | 1 | 257 | 4.86e-120 | 341 |
| Msa0597510 | MtrunA17_Chr4g0068561 | 42.484 | 153 | 57 | 2 | 88 | 211 | 42 | 192 | 2.00e-32 | 116 |
| Msa0597510 | MtrunA17_Chr4g0039621 | 41.139 | 158 | 64 | 1 | 88 | 216 | 648 | 805 | 4.86e-30 | 117 |
| Msa0597510 | MtrunA17_Chr3g0128701 | 35.374 | 147 | 66 | 2 | 87 | 204 | 230 | 376 | 5.62e-18 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0597510 | AT3G59980.1 | 47.561 | 246 | 73 | 5 | 17 | 217 | 39 | 273 | 2.71e-64 | 201 |
| Msa0597510 | AT4G13780.1 | 38.889 | 162 | 70 | 1 | 84 | 216 | 635 | 796 | 4.11e-25 | 103 |
| Msa0597510 | AT2G40660.1 | 43.023 | 86 | 49 | 0 | 87 | 172 | 231 | 316 | 7.74e-17 | 78.6 |
Find 40 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGTGAGAGAAAAGGGAATT+TGG | 0.204168 | 4_2:-30001515 | None:intergenic |
| CTGCTGGGTTGCTTGATATA+AGG | 0.220534 | 4_2:+30001668 | Msa0597510:CDS |
| TCTCGCCCCAAAACCCTATC+TGG | 0.227022 | 4_2:+30001550 | Msa0597510:CDS |
| TTTGGGTAGGAATGAGTAAT+TGG | 0.272747 | 4_2:-30001497 | None:intergenic |
| GAAGAAGAAAGAGTGCAAAA+TGG | 0.289404 | 4_2:-30001580 | None:intergenic |
| AGACCACTGCAAATAATTCT+AGG | 0.337017 | 4_2:-30001772 | None:intergenic |
| AGAGAACCCAGATAGGGTTT+TGG | 0.349454 | 4_2:-30001557 | None:intergenic |
| AGTGAGAGAAAAGGGAATTT+GGG | 0.353893 | 4_2:-30001514 | None:intergenic |
| TGCTGGGTTGCTTGATATAA+GGG | 0.359660 | 4_2:+30001669 | Msa0597510:CDS |
| ATGCGTGGCGTCAAGTCTTC+AGG | 0.362081 | 4_2:+30004283 | Msa0597510:CDS |
| ATGAAGAGAGTGAGAGAAAA+GGG | 0.367952 | 4_2:-30001522 | None:intergenic |
| TATCCCACTTGAAAACCTTC+AGG | 0.369847 | 4_2:+30001804 | Msa0597510:CDS |
| GATGAAGAGAGTGAGAGAAA+AGG | 0.423994 | 4_2:-30001523 | None:intergenic |
| TATGTTGAAGAGGTTGATAT+TGG | 0.447688 | 4_2:+30001739 | Msa0597510:CDS |
| CAAGTCTTCAGGAATGTTGA+TGG | 0.466166 | 4_2:+30004294 | Msa0597510:CDS |
| CTGCAAATAATTCTAGGTTC+AGG | 0.473329 | 4_2:-30001766 | None:intergenic |
| GGTAGTATTAAAGATACTGC+TGG | 0.480884 | 4_2:+30001652 | Msa0597510:intron |
| CATGTTATGCGTACATCTGC+AGG | 0.488090 | 4_2:+30005740 | Msa0597510:CDS |
| AAAATGGAGAGAACCCAGAT+AGG | 0.491884 | 4_2:-30001564 | None:intergenic |
| TTGACGCCACGCATATTCCT+AGG | 0.498755 | 4_2:-30004274 | None:intergenic |
| TGAATCACTTTATGTTGAAG+AGG | 0.510641 | 4_2:+30001729 | Msa0597510:CDS |
| TATTTGCATTCTGCAAAGAC+TGG | 0.514661 | 4_2:-30005775 | None:intergenic |
| TTCTTTCGAATCTGAAGCCT+AGG | 0.542707 | 4_2:+30004257 | Msa0597510:CDS |
| CTCGCCCCAAAACCCTATCT+GGG | 0.545617 | 4_2:+30001551 | Msa0597510:CDS |
| AAATGGAGAGAACCCAGATA+GGG | 0.556896 | 4_2:-30001563 | None:intergenic |
| CAGCCTCATCTTAAAACAGA+TGG | 0.557780 | 4_2:+30005692 | Msa0597510:CDS |
| TTGGTCAGATTGTGAAAGCA+TGG | 0.562162 | 4_2:+30001692 | Msa0597510:CDS |
| TTCTTCTTCTGAGACAGTCA+CGG | 0.562195 | 4_2:+30001597 | Msa0597510:CDS |
| AGAGAAAAGGGAATTTGGGT+AGG | 0.575873 | 4_2:-30001510 | None:intergenic |
| GGTTCTTGTACTGCGATGCT+AGG | 0.576090 | 4_2:+30005713 | Msa0597510:CDS |
| AAAATGGCAAATGTATTGAA+GGG | 0.586744 | 4_2:+30001406 | None:intergenic |
| GTAGTATTAAAGATACTGCT+GGG | 0.601949 | 4_2:+30001653 | Msa0597510:intron |
| GAACCTAGAATTATTTGCAG+TGG | 0.609307 | 4_2:+30001769 | Msa0597510:CDS |
| GTTGAAAACAATGAGAAGAG+TGG | 0.622685 | 4_2:+30001631 | Msa0597510:CDS |
| GGGTTGCTTGATATAAGGGT+TGG | 0.626322 | 4_2:+30001673 | Msa0597510:CDS |
| GGGTAGGAATGAGTAATTGG+TGG | 0.632299 | 4_2:-30001494 | None:intergenic |
| GGCTGTTCGTGAGAGTGTTG+CGG | 0.644726 | 4_2:-30001473 | None:intergenic |
| ATGGCAAATGTATTGAAGGG+TGG | 0.656961 | 4_2:+30001409 | Msa0597510:CDS |
| CTGAAGCCTAGGAATATGCG+TGG | 0.681661 | 4_2:+30004268 | Msa0597510:CDS |
| TGTTCGTGAGAGTGTTGCGG+TGG | 0.704534 | 4_2:-30001470 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATATCTTTTACTAATAT+CGG | + | chr4_2:30003433-30003452 | Msa0597510:intron | 10.0% |
| !!! | ATTTTTATTAAATAACATGT+TGG | - | chr4_2:30003761-30003780 | None:intergenic | 10.0% |
| !!! | AATACTAATAAATTTGTTTA+AGG | + | chr4_2:30003951-30003970 | Msa0597510:intron | 10.0% |
| !!! | AAAAAGAATTTTTAATTTGA+AGG | - | chr4_2:30004513-30004532 | None:intergenic | 10.0% |
| !! | GTATATAAAAATATTCAATG+CGG | - | chr4_2:30002584-30002603 | None:intergenic | 15.0% |
| !!! | ATATTTTTATATACTTGATG+TGG | + | chr4_2:30002590-30002609 | Msa0597510:intron | 15.0% |
| !!! | TATTTTTATATACTTGATGT+GGG | + | chr4_2:30002591-30002610 | Msa0597510:intron | 15.0% |
| !! | ATATATGTGGTATATTTAAA+GGG | - | chr4_2:30002694-30002713 | None:intergenic | 15.0% |
| !! | TAAACATAAATTTAGAAATG+AGG | - | chr4_2:30003796-30003815 | None:intergenic | 15.0% |
| !! | GAAAAACATAACAAATATTA+AGG | - | chr4_2:30003826-30003845 | None:intergenic | 15.0% |
| !!! | TCTTTTTATTTAAATTATCC+AGG | - | chr4_2:30003931-30003950 | None:intergenic | 15.0% |
| !! | TTCAATATGGAATTTAATTG+TGG | + | chr4_2:30001906-30001925 | Msa0597510:intron | 20.0% |
| !! | AAATTCTCCAAAATAGTTTA+TGG | - | chr4_2:30002136-30002155 | None:intergenic | 20.0% |
| !! | CATATATGTGGTATATTTAA+AGG | - | chr4_2:30002695-30002714 | None:intergenic | 20.0% |
| !! | AACTAAATTTCAAAGAAATC+TGG | + | chr4_2:30003201-30003220 | Msa0597510:intron | 20.0% |
| !!! | TTTTATAAAAACAGTATCGA+AGG | - | chr4_2:30003417-30003436 | None:intergenic | 20.0% |
| !!! | TTGTTTTAATTGAAGATTTG+TGG | + | chr4_2:30003472-30003491 | Msa0597510:intron | 20.0% |
| !! | TAAGCATACAACAAATATTA+AGG | - | chr4_2:30003848-30003867 | None:intergenic | 20.0% |
| !! | ATGAAAAATTAACCATGAAT+AGG | - | chr4_2:30004040-30004059 | None:intergenic | 20.0% |
| !!! | TAATTTTTCATATGCAAAAC+TGG | + | chr4_2:30004049-30004068 | Msa0597510:intron | 20.0% |
| !! | ATTAAAATGTAAGTTCTATG+AGG | + | chr4_2:30004116-30004135 | Msa0597510:intron | 20.0% |
| !! | ATTAATTGCAAAACATAAAG+TGG | - | chr4_2:30004145-30004164 | None:intergenic | 20.0% |
| !!! | TGCAATTAATATATTTGTTG+AGG | + | chr4_2:30004155-30004174 | Msa0597510:intron | 20.0% |
| !! | TTACATTCAAAAAAGTTGAA+TGG | + | chr4_2:30004471-30004490 | Msa0597510:intron | 20.0% |
| !! | TTTGAAGGTTGAATTATTAA+GGG | - | chr4_2:30004498-30004517 | None:intergenic | 20.0% |
| !! | ATTTGAAGGTTGAATTATTA+AGG | - | chr4_2:30004499-30004518 | None:intergenic | 20.0% |
| !! | AATGAATTCACAAAGTAAAT+GGG | - | chr4_2:30004639-30004658 | None:intergenic | 20.0% |
| !! | AAATGAATTCACAAAGTAAA+TGG | - | chr4_2:30004640-30004659 | None:intergenic | 20.0% |
| !! | ATGTTATTAAAGAGTAACTA+TGG | + | chr4_2:30005051-30005070 | Msa0597510:intron | 20.0% |
| !! | ATCAAGTCTAATTTCAATTT+GGG | - | chr4_2:30005275-30005294 | None:intergenic | 20.0% |
| !! | TATCAAGTCTAATTTCAATT+TGG | - | chr4_2:30005276-30005295 | None:intergenic | 20.0% |
| !! | AAACTGTTAAGGAAAAAAAT+GGG | + | chr4_2:30005307-30005326 | Msa0597510:intron | 20.0% |
| !!! | AACTAGTTTTATACTCTATT+AGG | + | chr4_2:30005386-30005405 | Msa0597510:intron | 20.0% |
| !!! | ACTAGTTTTATACTCTATTA+GGG | + | chr4_2:30005387-30005406 | Msa0597510:intron | 20.0% |
| !!! | ACAATCACTCTTATTTTTAT+AGG | - | chr4_2:30005460-30005479 | None:intergenic | 20.0% |
| !! | ACTAATGAATTAACATGTTA+TGG | - | chr4_2:30005584-30005603 | None:intergenic | 20.0% |
| !! | CAAGAATATTAAGTTACATA+TGG | - | chr4_2:30005627-30005646 | None:intergenic | 20.0% |
| !! | AGATACAAAAGAAAAAGATA+TGG | + | chr4_2:30005660-30005679 | Msa0597510:intron | 20.0% |
| !! | GATACAAAAGAAAAAGATAT+GGG | + | chr4_2:30005661-30005680 | Msa0597510:intron | 20.0% |
| !! | TTTTTATTGGCGCATTTTAT+CGG | + | chr4_2:30001881-30001900 | Msa0597510:intron | 25.0% |
| !! | CATTTTATCGGATTTCAATA+TGG | + | chr4_2:30001893-30001912 | Msa0597510:intron | 25.0% |
| ! | AATTTAATTGTGGACCAAAT+TGG | + | chr4_2:30001916-30001935 | Msa0597510:intron | 25.0% |
| !!! | GTTGTTTCCATAAACTATTT+TGG | + | chr4_2:30002126-30002145 | Msa0597510:intron | 25.0% |
| ! | TTCATTCATCTATCAGTATT+TGG | + | chr4_2:30002415-30002434 | Msa0597510:intron | 25.0% |
| !! | TGCTGTATAGTATTTTTCTA+TGG | + | chr4_2:30003595-30003614 | Msa0597510:intron | 25.0% |
| ! | ACAGTTCAAATATTGAAGTT+TGG | - | chr4_2:30003691-30003710 | None:intergenic | 25.0% |
| ! | TAGCTTCATTTATGAACTTT+AGG | + | chr4_2:30003726-30003745 | Msa0597510:intron | 25.0% |
| ! | GTATGCTTATGTATTTAGAA+AGG | + | chr4_2:30003859-30003878 | Msa0597510:intron | 25.0% |
| ! | ACACAAAAACACAAATATGA+TGG | - | chr4_2:30004189-30004208 | None:intergenic | 25.0% |
| ! | ATGAATTCACAAAGTAAATG+GGG | - | chr4_2:30004638-30004657 | None:intergenic | 25.0% |
| !!! | GTTAATTTTACTTGCTAAGA+AGG | + | chr4_2:30004685-30004704 | Msa0597510:intron | 25.0% |
| !! | ATGTTTTCACAAAGTAAACA+TGG | + | chr4_2:30004912-30004931 | Msa0597510:intron | 25.0% |
| !!! | ATCTAACAATTTGCTATGTT+TGG | + | chr4_2:30005003-30005022 | Msa0597510:intron | 25.0% |
| ! | CAAACTGTTAAGGAAAAAAA+TGG | + | chr4_2:30005306-30005325 | Msa0597510:intron | 25.0% |
| ! | ACAAGGGAATACATAAAAAA+GGG | - | chr4_2:30005358-30005377 | None:intergenic | 25.0% |
| ! | AACATGTTATGGTAATTGAT+AGG | - | chr4_2:30005573-30005592 | None:intergenic | 25.0% |
| ! | AAAGAAAAAGATATGGGAAT+TGG | + | chr4_2:30005667-30005686 | Msa0597510:CDS | 25.0% |
| GTAGTATTAAAGATACTGCT+GGG | + | chr4_2:30001653-30001672 | Msa0597510:intron | 30.0% | |
| TGAATCACTTTATGTTGAAG+AGG | + | chr4_2:30001729-30001748 | Msa0597510:CDS | 30.0% | |
| !! | TATGTTGAAGAGGTTGATAT+TGG | + | chr4_2:30001739-30001758 | Msa0597510:CDS | 30.0% |
| ! | GGTAAGTTGTTAGAACTTTT+AGG | + | chr4_2:30001955-30001974 | Msa0597510:intron | 30.0% |
| ! | ATATGTTTTGTGACACTGTT+TGG | - | chr4_2:30002218-30002237 | None:intergenic | 30.0% |
| TGAAATAAAGCAATCCAAAC+AGG | + | chr4_2:30002252-30002271 | Msa0597510:intron | 30.0% | |
| TATGACTCAAATAAGTCACA+AGG | - | chr4_2:30002301-30002320 | None:intergenic | 30.0% | |
| AAGAATAAATGGCTATCACT+AGG | - | chr4_2:30002388-30002407 | None:intergenic | 30.0% | |
| AGTGATAGCCATTTATTCTT+TGG | + | chr4_2:30002388-30002407 | Msa0597510:intron | 30.0% | |
| ATTCATCTATCAGTATTTGG+TGG | + | chr4_2:30002418-30002437 | Msa0597510:intron | 30.0% | |
| ! | GCTTAATGGAATAGTCTTTT+GGG | - | chr4_2:30002538-30002557 | None:intergenic | 30.0% |
| CAAAAGACTATTCCATTAAG+CGG | + | chr4_2:30002537-30002556 | Msa0597510:intron | 30.0% | |
| AAAAGACTATTCCATTAAGC+GGG | + | chr4_2:30002538-30002557 | Msa0597510:intron | 30.0% | |
| AAATATTCAATGCGGTACTT+AGG | - | chr4_2:30002576-30002595 | None:intergenic | 30.0% | |
| GACTCATAACATAAGTAGAT+TGG | + | chr4_2:30002613-30002632 | Msa0597510:intron | 30.0% | |
| TGATTCAATTTCTGACTGAT+TGG | + | chr4_2:30002657-30002676 | Msa0597510:intron | 30.0% | |
| ATGTGGTATATTTAAAGGGT+TGG | - | chr4_2:30002690-30002709 | None:intergenic | 30.0% | |
| AATCTTCAAAAATGCATGTG+AGG | + | chr4_2:30002730-30002749 | Msa0597510:intron | 30.0% | |
| ! | AAATCTGGAATTCAAACACA+TGG | + | chr4_2:30003216-30003235 | Msa0597510:intron | 30.0% |
| ! | TCAGCTAATATTTGGAATGA+TGG | - | chr4_2:30003258-30003277 | None:intergenic | 30.0% |
| CTTTCACTTCAGCTAATATT+TGG | - | chr4_2:30003266-30003285 | None:intergenic | 30.0% | |
| ! | AATATTGAAGTTTGGAGTCT+TGG | - | chr4_2:30003683-30003702 | None:intergenic | 30.0% |
| TATATTATATCTCTCTCCCA+AGG | + | chr4_2:30003882-30003901 | Msa0597510:intron | 30.0% | |
| TAAGATACTCTTCCTATTCA+TGG | + | chr4_2:30004025-30004044 | Msa0597510:intron | 30.0% | |
| AACTGGAAAATAACTTATCC+AGG | + | chr4_2:30004066-30004085 | Msa0597510:intron | 30.0% | |
| GATACTTCATCAAGAAACAT+TGG | + | chr4_2:30004578-30004597 | Msa0597510:intron | 30.0% | |
| !!! | GAACAATTGTGTGCATTTTT+TGG | + | chr4_2:30004728-30004747 | Msa0597510:intron | 30.0% |
| CTTGAAGTGAATTATTGTGA+TGG | - | chr4_2:30004832-30004851 | None:intergenic | 30.0% | |
| !! | ACAATTTGCTATGTTTGGAT+TGG | + | chr4_2:30005008-30005027 | Msa0597510:intron | 30.0% |
| AACAGAAGGGTAAAGATTAT+TGG | + | chr4_2:30005170-30005189 | Msa0597510:intron | 30.0% | |
| ! | GTTTTCTCATATCTCACATA+AGG | + | chr4_2:30005192-30005211 | Msa0597510:intron | 30.0% |
| ! | ATTTGAAGCTCAAACTGTTA+AGG | + | chr4_2:30005296-30005315 | Msa0597510:intron | 30.0% |
| CACAAGGGAATACATAAAAA+AGG | - | chr4_2:30005359-30005378 | None:intergenic | 30.0% | |
| ATACTCTATTAGGGAGTAAT+AGG | + | chr4_2:30005396-30005415 | Msa0597510:intron | 30.0% | |
| TTTGGGTAGGAATGAGTAAT+TGG | - | chr4_2:30001500-30001519 | None:intergenic | 35.0% | |
| AGTGAGAGAAAAGGGAATTT+GGG | - | chr4_2:30001517-30001536 | None:intergenic | 35.0% | |
| ATGAAGAGAGTGAGAGAAAA+GGG | - | chr4_2:30001525-30001544 | None:intergenic | 35.0% | |
| ! | GAAGAAGAAAGAGTGCAAAA+TGG | - | chr4_2:30001583-30001602 | None:intergenic | 35.0% |
| ! | TCATTGTTTTCAACAGCGAT+GGG | - | chr4_2:30001625-30001644 | None:intergenic | 35.0% |
| GTTGAAAACAATGAGAAGAG+TGG | + | chr4_2:30001631-30001650 | Msa0597510:CDS | 35.0% | |
| GGTAGTATTAAAGATACTGC+TGG | + | chr4_2:30001652-30001671 | Msa0597510:intron | 35.0% | |
| CTGCAAATAATTCTAGGTTC+AGG | - | chr4_2:30001769-30001788 | None:intergenic | 35.0% | |
| GAACCTAGAATTATTTGCAG+TGG | + | chr4_2:30001769-30001788 | Msa0597510:CDS | 35.0% | |
| AGACCACTGCAAATAATTCT+AGG | - | chr4_2:30001775-30001794 | None:intergenic | 35.0% | |
| !!! | AAACCTGAAGGTTTTCAAGT+GGG | - | chr4_2:30001810-30001829 | None:intergenic | 35.0% |
| GTTCTAACAACTTACCATTG+AGG | - | chr4_2:30001951-30001970 | None:intergenic | 35.0% | |
| GATAGCCATTTATTCTTTGG+CGG | + | chr4_2:30002391-30002410 | Msa0597510:intron | 35.0% | |
| CGGGCTTAAGTAATAACAAT+TGG | - | chr4_2:30002502-30002521 | None:intergenic | 35.0% | |
| !! | AATGGAATAGTCTTTTGGGT+TGG | - | chr4_2:30002534-30002553 | None:intergenic | 35.0% |
| ! | CGCTTAATGGAATAGTCTTT+TGG | - | chr4_2:30002539-30002558 | None:intergenic | 35.0% |
| GATTGGATTTCTTAAGCACT+TGG | + | chr4_2:30002630-30002649 | Msa0597510:intron | 35.0% | |
| ACCACATATATGCTCAGAAA+AGG | + | chr4_2:30002703-30002722 | Msa0597510:intron | 35.0% | |
| ! | TCCTTTTCTGAGCATATATG+TGG | - | chr4_2:30002707-30002726 | None:intergenic | 35.0% |
| GTTTGAATCTCTTAAGCACA+TGG | + | chr4_2:30002770-30002789 | Msa0597510:intron | 35.0% | |
| ! | GTTCATGACTATGTTTCTGT+TGG | - | chr4_2:30002863-30002882 | None:intergenic | 35.0% |
| AAGTTTGCAATAAACCCAAC+AGG | + | chr4_2:30002911-30002930 | Msa0597510:intron | 35.0% | |
| ! | TGCTTTGAATAGTTAAGGTC+AGG | - | chr4_2:30003175-30003194 | None:intergenic | 35.0% |
| ! | TGCGATGCTTTGAATAGTTA+AGG | - | chr4_2:30003180-30003199 | None:intergenic | 35.0% |
| ATTCAGACTAGGAGTTATGA+TGG | - | chr4_2:30003394-30003413 | None:intergenic | 35.0% | |
| CCAATATCCTGTTATTCCTT+GGG | - | chr4_2:30003901-30003920 | None:intergenic | 35.0% | |
| ACCAATATCCTGTTATTCCT+TGG | - | chr4_2:30003902-30003921 | None:intergenic | 35.0% | |
| CTTTAGGCATATTTGTGTGA+TGG | + | chr4_2:30003989-30004008 | Msa0597510:intron | 35.0% | |
| CTGACATACATTAAGTAACC+TGG | - | chr4_2:30004087-30004106 | None:intergenic | 35.0% | |
| AACAGTAAGACACAAATGCA+GGG | + | chr4_2:30004220-30004239 | Msa0597510:intron | 35.0% | |
| ! | AAGAATATGGTTTGGATCTG+CGG | + | chr4_2:30004384-30004403 | Msa0597510:intron | 35.0% |
| AGTAGAGTTATTGCCTGATT+GGG | - | chr4_2:30004442-30004461 | None:intergenic | 35.0% | |
| AAGTAGAGTTATTGCCTGAT+TGG | - | chr4_2:30004443-30004462 | None:intergenic | 35.0% | |
| TGTGATTGCTTAGCTAAATG+CGG | + | chr4_2:30005124-30005143 | Msa0597510:intron | 35.0% | |
| ! | AATTTAGAGAGCACAACAGA+AGG | + | chr4_2:30005156-30005175 | Msa0597510:intron | 35.0% |
| ! | ATTTAGAGAGCACAACAGAA+GGG | + | chr4_2:30005157-30005176 | Msa0597510:intron | 35.0% |
| GATGCCTAGGATTATGTTAA+GGG | + | chr4_2:30005245-30005264 | Msa0597510:intron | 35.0% | |
| TCATCCCTTAACATAATCCT+AGG | - | chr4_2:30005252-30005271 | None:intergenic | 35.0% | |
| AGACAAAGACTTAAGCGATT+TGG | - | chr4_2:30005507-30005526 | None:intergenic | 35.0% | |
| ! | TTTTCCTTCGATCTTTTGTG+TGG | + | chr4_2:30005541-30005560 | Msa0597510:intron | 35.0% |
| TAAACCACACAAAAGATCGA+AGG | - | chr4_2:30005548-30005567 | None:intergenic | 35.0% | |
| !!! | GAACCATCTGTTTTAAGATG+AGG | - | chr4_2:30005698-30005717 | None:intergenic | 35.0% |
| TATTTGCATTCTGCAAAGAC+TGG | - | chr4_2:30005778-30005797 | None:intergenic | 35.0% | |
| ATGGCAAATGTATTGAAGGG+TGG | + | chr4_2:30001409-30001428 | Msa0597510:CDS | 40.0% | |
| AGAGAAAAGGGAATTTGGGT+AGG | - | chr4_2:30001513-30001532 | None:intergenic | 40.0% | |
| GAGTGAGAGAAAAGGGAATT+TGG | - | chr4_2:30001518-30001537 | None:intergenic | 40.0% | |
| GATGAAGAGAGTGAGAGAAA+AGG | - | chr4_2:30001526-30001545 | None:intergenic | 40.0% | |
| AAATGGAGAGAACCCAGATA+GGG | - | chr4_2:30001566-30001585 | None:intergenic | 40.0% | |
| AAAATGGAGAGAACCCAGAT+AGG | - | chr4_2:30001567-30001586 | None:intergenic | 40.0% | |
| !! | TTCTTCTTCTGAGACAGTCA+CGG | + | chr4_2:30001597-30001616 | Msa0597510:CDS | 40.0% |
| ! | CTCATTGTTTTCAACAGCGA+TGG | - | chr4_2:30001626-30001645 | None:intergenic | 40.0% |
| TGCTGGGTTGCTTGATATAA+GGG | + | chr4_2:30001669-30001688 | Msa0597510:CDS | 40.0% | |
| TTGGTCAGATTGTGAAAGCA+TGG | + | chr4_2:30001692-30001711 | Msa0597510:CDS | 40.0% | |
| TATCCCACTTGAAAACCTTC+AGG | + | chr4_2:30001804-30001823 | Msa0597510:CDS | 40.0% | |
| !! | GAAACCTGAAGGTTTTCAAG+TGG | - | chr4_2:30001811-30001830 | None:intergenic | 40.0% |
| AGAAAGAGAGTGAAACCTGA+AGG | - | chr4_2:30001822-30001841 | None:intergenic | 40.0% | |
| ! | TAGAACTTTTAGGCGCAATG+CGG | + | chr4_2:30001965-30001984 | Msa0597510:intron | 40.0% |
| TGAAGCCGCCAAAGAATAAA+TGG | - | chr4_2:30002399-30002418 | None:intergenic | 40.0% | |
| AAATGCATGTGAGGATAGTC+TGG | + | chr4_2:30002739-30002758 | Msa0597510:intron | 40.0% | |
| TGATTTCTGACATGCAAAGC+AGG | + | chr4_2:30002802-30002821 | Msa0597510:intron | 40.0% | |
| AAAGCAGGTAAACGATGTTG+TGG | + | chr4_2:30002817-30002836 | Msa0597510:intron | 40.0% | |
| ATTCAACTCACTGTCCTGTT+GGG | - | chr4_2:30002928-30002947 | None:intergenic | 40.0% | |
| AATTCAACTCACTGTCCTGT+TGG | - | chr4_2:30002929-30002948 | None:intergenic | 40.0% | |
| GGTTTCAACACATGAGAGTT+AGG | - | chr4_2:30002954-30002973 | None:intergenic | 40.0% | |
| CAATTCAGCTCAATAGAGCT+AGG | - | chr4_2:30002975-30002994 | None:intergenic | 40.0% | |
| AACAAGGCTCTTTGAGTGAT+AGG | - | chr4_2:30003294-30003313 | None:intergenic | 40.0% | |
| TTGCCTATCAACATGCAACA+AGG | - | chr4_2:30003310-30003329 | None:intergenic | 40.0% | |
| ! | TTGTTGCATGTTGATAGGCA+AGG | + | chr4_2:30003309-30003328 | Msa0597510:intron | 40.0% |
| ! | GAGTTATGATGGTGTTTGAG+GGG | - | chr4_2:30003383-30003402 | None:intergenic | 40.0% |
| ! | GGAGTTATGATGGTGTTTGA+GGG | - | chr4_2:30003384-30003403 | None:intergenic | 40.0% |
| ! | AGGAGTTATGATGGTGTTTG+AGG | - | chr4_2:30003385-30003404 | None:intergenic | 40.0% |
| ! | AGTATCGAAGGATTCAGACT+AGG | - | chr4_2:30003405-30003424 | None:intergenic | 40.0% |
| GGCTCTCAGAAGAACAAAAA+AGG | + | chr4_2:30003649-30003668 | Msa0597510:intron | 40.0% | |
| CCCAAGGAATAACAGGATAT+TGG | + | chr4_2:30003898-30003917 | Msa0597510:intron | 40.0% | |
| GCCAATCATATGCTCACTTT+AGG | + | chr4_2:30003973-30003992 | Msa0597510:intron | 40.0% | |
| GCCTAAAGTGAGCATATGAT+TGG | - | chr4_2:30003977-30003996 | None:intergenic | 40.0% | |
| CTGCATTTGTGTCTTACTGT+TGG | - | chr4_2:30004221-30004240 | None:intergenic | 40.0% | |
| CAACAGTAAGACACAAATGC+AGG | + | chr4_2:30004219-30004238 | Msa0597510:intron | 40.0% | |
| ! | TTCTTTCGAATCTGAAGCCT+AGG | + | chr4_2:30004257-30004276 | Msa0597510:CDS | 40.0% |
| CAAGTCTTCAGGAATGTTGA+TGG | + | chr4_2:30004294-30004313 | Msa0597510:CDS | 40.0% | |
| CAACTCCTGGTGAAAGAATA+TGG | + | chr4_2:30004371-30004390 | Msa0597510:intron | 40.0% | |
| CCAAACCATATTCTTTCACC+AGG | - | chr4_2:30004379-30004398 | None:intergenic | 40.0% | |
| CCTGGTGAAAGAATATGGTT+TGG | + | chr4_2:30004376-30004395 | Msa0597510:intron | 40.0% | |
| AGAAAAGGACAATCAACCTG+AGG | + | chr4_2:30004408-30004427 | Msa0597510:intron | 40.0% | |
| AGTTATTGCCTGATTGGGTT+TGG | - | chr4_2:30004437-30004456 | None:intergenic | 40.0% | |
| ACGCACACACATATATGATG+AGG | - | chr4_2:30005103-30005122 | None:intergenic | 40.0% | |
| TTGACAGAGACTGTTGAGAA+TGG | + | chr4_2:30005221-30005240 | Msa0597510:intron | 40.0% | |
| CGATGCCTAGGATTATGTTA+AGG | + | chr4_2:30005244-30005263 | Msa0597510:intron | 40.0% | |
| !! | AACTAGTTCTGCAGTCACAA+GGG | - | chr4_2:30005374-30005393 | None:intergenic | 40.0% |
| !! | AAACTAGTTCTGCAGTCACA+AGG | - | chr4_2:30005375-30005394 | None:intergenic | 40.0% |
| CAGCCTCATCTTAAAACAGA+TGG | + | chr4_2:30005692-30005711 | Msa0597510:CDS | 40.0% | |
| GGGTAGGAATGAGTAATTGG+TGG | - | chr4_2:30001497-30001516 | None:intergenic | 45.0% | |
| ! | AGAACCCAGATAGGGTTTTG+GGG | - | chr4_2:30001558-30001577 | None:intergenic | 45.0% |
| ! | GAGAACCCAGATAGGGTTTT+GGG | - | chr4_2:30001559-30001578 | None:intergenic | 45.0% |
| ! | AGAGAACCCAGATAGGGTTT+TGG | - | chr4_2:30001560-30001579 | None:intergenic | 45.0% |
| CTGCTGGGTTGCTTGATATA+AGG | + | chr4_2:30001668-30001687 | Msa0597510:CDS | 45.0% | |
| GGGTTGCTTGATATAAGGGT+TGG | + | chr4_2:30001673-30001692 | Msa0597510:CDS | 45.0% | |
| TGAGGCAGACAACACCAATT+TGG | - | chr4_2:30001933-30001952 | None:intergenic | 45.0% | |
| !! | ATTGGTGTTGTCTGCCTCAA+TGG | + | chr4_2:30001934-30001953 | Msa0597510:intron | 45.0% |
| AAGTTTCTTATCCAGACGCC+TGG | - | chr4_2:30002016-30002035 | None:intergenic | 45.0% | |
| ATCGGCGACTTTCACTCTAT+CGG | + | chr4_2:30002350-30002369 | Msa0597510:intron | 45.0% | |
| ACTACGTACAGGCTGGATTA+GGG | - | chr4_2:30002448-30002467 | None:intergenic | 45.0% | |
| CTACAGAAACGACTACGTAC+AGG | - | chr4_2:30002459-30002478 | None:intergenic | 45.0% | |
| !!! | TTTTGGGTTGGCTCTCAACA+CGG | - | chr4_2:30002522-30002541 | None:intergenic | 45.0% |
| TCTCTTAAGCACATGGTCAG+TGG | + | chr4_2:30002777-30002796 | Msa0597510:intron | 45.0% | |
| !! | TTGAATCTAGCTCTCCAACG+AGG | + | chr4_2:30002992-30003011 | Msa0597510:intron | 45.0% |
| AAGAGTCTCTGCAAACTCGT+GGG | - | chr4_2:30003040-30003059 | None:intergenic | 45.0% | |
| !! | GAGCCTTGTTGCATGTTGAT+AGG | + | chr4_2:30003304-30003323 | Msa0597510:intron | 45.0% |
| ! | TGTTGATAGGCAAGGAAGTG+TGG | + | chr4_2:30003317-30003336 | Msa0597510:intron | 45.0% |
| GTACTGTGATTTCTGACCAG+TGG | + | chr4_2:30003628-30003647 | Msa0597510:intron | 45.0% | |
| ! | TTTGTTCTTCTGAGAGCCAC+TGG | - | chr4_2:30003647-30003666 | None:intergenic | 45.0% |
| TCTCTCTCCCAAGGAATAAC+AGG | + | chr4_2:30003891-30003910 | Msa0597510:intron | 45.0% | |
| GTTTGGATCTGCGGAAGAAA+AGG | + | chr4_2:30004393-30004412 | Msa0597510:intron | 45.0% | |
| AGAGTGATTGTCGTAGACGT+TGG | + | chr4_2:30005469-30005488 | Msa0597510:intron | 45.0% | |
| CATGTTATGCGTACATCTGC+AGG | + | chr4_2:30005740-30005759 | Msa0597510:CDS | 45.0% | |
| !!! | ATTAAAATTATGTTTTTTAT+TGG | + | chr4_2:30001868-30001887 | Msa0597510:intron | 5.0% |
| !! | ATCCAGACGCCTGGTCTTTT+GGG | - | chr4_2:30002007-30002026 | None:intergenic | 50.0% |
| !! | TATCCAGACGCCTGGTCTTT+TGG | - | chr4_2:30002008-30002027 | None:intergenic | 50.0% |
| AAGCAATCCAAACAGGCCCT+AGG | + | chr4_2:30002259-30002278 | Msa0597510:intron | 50.0% | |
| CTAATGACCTAGGGCCTGTT+TGG | - | chr4_2:30002269-30002288 | None:intergenic | 50.0% | |
| CAAACAGGCCCTAGGTCATT+AGG | + | chr4_2:30002267-30002286 | Msa0597510:intron | 50.0% | |
| CTGTCCCACCTAATGACCTA+GGG | - | chr4_2:30002278-30002297 | None:intergenic | 50.0% | |
| !! | GATGACGTCGGCTCTTAAAG+GGG | - | chr4_2:30002333-30002352 | None:intergenic | 50.0% |
| !! | CGATGACGTCGGCTCTTAAA+GGG | - | chr4_2:30002334-30002353 | None:intergenic | 50.0% |
| ! | CCTTTAAGAGCCGACGTCAT+CGG | + | chr4_2:30002332-30002351 | Msa0597510:intron | 50.0% |
| GACTTTCACTCTATCGGCAG+TGG | + | chr4_2:30002356-30002375 | Msa0597510:intron | 50.0% | |
| GACTACGTACAGGCTGGATT+AGG | - | chr4_2:30002449-30002468 | None:intergenic | 50.0% | |
| AGAAACGACTACGTACAGGC+TGG | - | chr4_2:30002455-30002474 | None:intergenic | 50.0% | |
| !! | TTTGGGTTGGCTCTCAACAC+GGG | - | chr4_2:30002521-30002540 | None:intergenic | 50.0% |
| AGAGTCTCTGCAAACTCGTG+GGG | - | chr4_2:30003039-30003058 | None:intergenic | 50.0% | |
| CAAGAGTCTCTGCAAACTCG+TGG | - | chr4_2:30003041-30003060 | None:intergenic | 50.0% | |
| ! | CAGGATATTGGTGTCTGTCC+TGG | + | chr4_2:30003910-30003929 | Msa0597510:intron | 50.0% |
| CTGAAGCCTAGGAATATGCG+TGG | + | chr4_2:30004268-30004287 | Msa0597510:CDS | 50.0% | |
| TTGACGCCACGCATATTCCT+AGG | - | chr4_2:30004277-30004296 | None:intergenic | 50.0% | |
| TTCACCAGGAGTTGCTTCCT+CGG | - | chr4_2:30004365-30004384 | None:intergenic | 50.0% | |
| TGTTGAGAATGGCGATGCCT+AGG | + | chr4_2:30005232-30005251 | Msa0597510:intron | 50.0% | |
| GGTTCTTGTACTGCGATGCT+AGG | + | chr4_2:30005713-30005732 | Msa0597510:CDS | 50.0% | |
| !! | TGTTCGTGAGAGTGTTGCGG+TGG | - | chr4_2:30001473-30001492 | None:intergenic | 55.0% |
| !! | GGCTGTTCGTGAGAGTGTTG+CGG | - | chr4_2:30001476-30001495 | None:intergenic | 55.0% |
| !!! | TAGGGTTTTGGGGCGAGAAG+AGG | - | chr4_2:30001548-30001567 | None:intergenic | 55.0% |
| TCTCGCCCCAAAACCCTATC+TGG | + | chr4_2:30001550-30001569 | Msa0597510:CDS | 55.0% | |
| CTCGCCCCAAAACCCTATCT+GGG | + | chr4_2:30001551-30001570 | Msa0597510:CDS | 55.0% | |
| AGAGCCCAACCCAAAAGACC+AGG | + | chr4_2:30001995-30002014 | Msa0597510:intron | 55.0% | |
| !!! | GACGCCTGGTCTTTTGGGTT+GGG | - | chr4_2:30002002-30002021 | None:intergenic | 55.0% |
| !! | AGACGCCTGGTCTTTTGGGT+TGG | - | chr4_2:30002003-30002022 | None:intergenic | 55.0% |
| AACCCAAAAGACCAGGCGTC+TGG | + | chr4_2:30002002-30002021 | Msa0597510:intron | 55.0% | |
| ACAGGCCCTAGGTCATTAGG+TGG | + | chr4_2:30002270-30002289 | Msa0597510:intron | 55.0% | |
| CAGGCCCTAGGTCATTAGGT+GGG | + | chr4_2:30002271-30002290 | Msa0597510:intron | 55.0% | |
| GCTGTCCCACCTAATGACCT+AGG | - | chr4_2:30002279-30002298 | None:intergenic | 55.0% | |
| !! | CCGATGACGTCGGCTCTTAA+AGG | - | chr4_2:30002335-30002354 | None:intergenic | 55.0% |
| GTGAAAGTCGCCGATGACGT+CGG | - | chr4_2:30002345-30002364 | None:intergenic | 55.0% | |
| CGCAAGTCTCTCCCGCTTAA+TGG | - | chr4_2:30002552-30002571 | None:intergenic | 55.0% | |
| ! | TAGCTCTCCAACGAGGTGTC+AGG | + | chr4_2:30002999-30003018 | Msa0597510:intron | 55.0% |
| ! | AGCTCTCCAACGAGGTGTCA+GGG | + | chr4_2:30003000-30003019 | Msa0597510:intron | 55.0% |
| ! | CAACGAGGTGTCAGGGTTTG+CGG | + | chr4_2:30003007-30003026 | Msa0597510:intron | 55.0% |
| ! | AACGAGGTGTCAGGGTTTGC+GGG | + | chr4_2:30003008-30003027 | Msa0597510:intron | 55.0% |
| ATGCGTGGCGTCAAGTCTTC+AGG | + | chr4_2:30004283-30004302 | Msa0597510:CDS | 55.0% | |
| TGAACTTCTGTTCCCTCCCG+AGG | + | chr4_2:30004345-30004364 | Msa0597510:intron | 55.0% | |
| TCACCAGGAGTTGCTTCCTC+GGG | - | chr4_2:30004364-30004383 | None:intergenic | 55.0% | |
| TGATTGGGTTTGGCAGCCTC+AGG | - | chr4_2:30004427-30004446 | None:intergenic | 55.0% | |
| TGAGGCTGCCAAACCCAATC+AGG | + | chr4_2:30004426-30004445 | Msa0597510:intron | 55.0% | |
| !! | GACGTCGGCTCTTAAAGGGG+TGG | - | chr4_2:30002330-30002349 | None:intergenic | 60.0% |
| CGCAAACCCTGACACCTCGT+TGG | - | chr4_2:30003009-30003028 | None:intergenic | 60.0% | |
| CAGGAGTTGCTTCCTCGGGA+GGG | - | chr4_2:30004360-30004379 | None:intergenic | 60.0% | |
| CCAGGAGTTGCTTCCTCGGG+AGG | - | chr4_2:30004361-30004380 | None:intergenic | 65.0% | |
| CCTCCCGAGGAAGCAACTCC+TGG | + | chr4_2:30004358-30004377 | Msa0597510:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 30001409 | 30005805 | 30001409 | ID=Msa0597510;Name=Msa0597510 |
| chr4_2 | mRNA | 30001409 | 30005805 | 30001409 | ID=Msa0597510-mRNA-1;Parent=Msa0597510;Name=Msa0597510-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0|0.5|4|0|217 |
| chr4_2 | exon | 30001409 | 30001655 | 30001409 | ID=Msa0597510-mRNA-1:exon:7589;Parent=Msa0597510-mRNA-1 |
| chr4_2 | exon | 30001665 | 30001825 | 30001665 | ID=Msa0597510-mRNA-1:exon:7590;Parent=Msa0597510-mRNA-1 |
| chr4_2 | exon | 30004241 | 30004342 | 30004241 | ID=Msa0597510-mRNA-1:exon:7591;Parent=Msa0597510-mRNA-1 |
| chr4_2 | exon | 30005662 | 30005805 | 30005662 | ID=Msa0597510-mRNA-1:exon:7592;Parent=Msa0597510-mRNA-1 |
| chr4_2 | CDS | 30001409 | 30001655 | 30001409 | ID=Msa0597510-mRNA-1:cds;Parent=Msa0597510-mRNA-1 |
| chr4_2 | CDS | 30001665 | 30001825 | 30001665 | ID=Msa0597510-mRNA-1:cds;Parent=Msa0597510-mRNA-1 |
| chr4_2 | CDS | 30004241 | 30004342 | 30004241 | ID=Msa0597510-mRNA-1:cds;Parent=Msa0597510-mRNA-1 |
| chr4_2 | CDS | 30005662 | 30005805 | 30005662 | ID=Msa0597510-mRNA-1:cds;Parent=Msa0597510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
