AlfalfaGEDB | Msa0641510

M. sativa cultivar zhongmu-4 / Msa0641510

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0641510	QDX01712.1	100.000	190	0	0	3	192	72	261	3.50e-138	396

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0641510	sp\|Q9FMR3\|NAC90_ARATH	54.375	160	66	3	4	162	74	227	2.42e-49	162

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0641510	A0A6B7JHA6	100.000	190	0	0	3	192	72	261	1.67e-138	396

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0641510	TF	NAC

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0601070	Msa0641510	0.868619	5.708865e-66	-8.615850e-47
Msa0641510	Msa1453190	0.877567	5.667895e-69	-8.615850e-47

Showing 1 to 2 of 2 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0641510	MtrunA17_Chr4g0026141	97.368	190	5	0	3	192	72	261	3.79e-138	386
Msa0641510	MtrunA17_Chr2g0321631	57.513	193	60	6	4	191	73	248	2.19e-66	204
Msa0641510	MtrunA17_Chr7g0266701	44.221	199	80	7	4	191	73	251	9.89e-48	156
Msa0641510	MtrunA17_Chr4g0038751	40.541	111	56	3	5	113	79	181	5.97e-22	90.5
Msa0641510	MtrunA17_Chr5g0398971	32.927	164	96	5	10	171	79	230	3.51e-20	86.3
Msa0641510	MtrunA17_Chr5g0417791	48.387	93	45	3	1	91	62	153	2.16e-19	82.8
Msa0641510	MtrunA17_Chr4g0076731	47.312	93	43	2	4	95	116	203	5.15e-19	84.0
Msa0641510	MtrunA17_Chr4g0042561	46.067	89	46	2	4	91	72	159	2.05e-18	80.5
Msa0641510	MtrunA17_Chr6g0453131	37.607	117	65	3	4	113	77	192	2.10e-18	81.6
Msa0641510	MtrunA17_Chr8g0359921	45.122	82	43	2	10	91	83	162	2.11e-18	81.3

Showing 1 to 10 of 70 entries

Previous1 2 3 4 5 6 7Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0641510	AT3G44350.2	50.000	190	73	6	4	192	73	241	9.03e-54	171
Msa0641510	AT5G22380.1	54.375	160	66	3	4	162	74	227	2.46e-50	162
Msa0641510	AT3G44350.1	64.045	89	30	1	4	92	73	159	5.46e-36	124
Msa0641510	AT2G17040.1	33.333	150	80	5	4	145	69	206	4.60e-20	85.5
Msa0641510	AT2G02450.2	50.000	82	36	1	10	91	120	196	2.14e-19	85.1
Msa0641510	AT2G02450.1	50.000	82	36	1	10	91	120	196	2.35e-19	84.7
Msa0641510	AT4G27410.2	45.122	82	41	2	10	91	83	160	2.46e-17	78.2
Msa0641510	AT3G15500.1	46.341	82	40	2	10	91	83	160	2.98e-17	78.2
Msa0641510	AT1G61110.1	41.441	111	54	3	10	110	85	194	3.02e-17	78.6
Msa0641510	AT4G17980.2	43.678	87	47	2	5	90	72	157	4.41e-17	77.4

Showing 1 to 10 of 117 entries

Previous1 2 3 4 5…12Next

Find 66 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCATGGTGTTCTATAA+AGG	0.328853	4_3:-42140936	Msa0641510:CDS
AAGAGAGAGAAGCAAGGGGA+GGG	0.540485	4_3:-42141052	Msa0641510:CDS
AAGGAAAAGCTCCAAGTGGA+AGG	0.577529	4_3:-42140917	Msa0641510:CDS
AAGTAATCATATGCCACTAG+AGG	0.633670	4_3:-42139427	Msa0641510:CDS
AATAGTAACAATGAAAATAA+TGG	0.367657	4_3:-42139369	Msa0641510:CDS
AATTAACTCCAGCTCATGGT+GGG	0.625503	4_3:-42139284	Msa0641510:three_prime_UTR
ACAAAGATCCTATATTTCAT+GGG	0.516646	4_3:+42139111	None:intergenic
ACCATGAGCTGGAGTTAATT+AGG	0.306112	4_3:+42139287	None:intergenic
AGAAAGAGTTGATCAATTAC+GGG	0.452891	4_3:-42139541	Msa0641510:CDS
AGGTCAAGAGAGAGAAGCAA+GGG	0.520943	4_3:-42141057	Msa0641510:CDS

Showing 1 to 10 of 66 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TATTCAGTTACATCTTAAGC+AGG	-	chr4_3:42139142-42139161	Msa0641510:three_prime_UTR	30.0%
GCAAAATGTTGAACTTAAGT+TGG	-	chr4_3:42139189-42139208	Msa0641510:three_prime_UTR	30.0%
GCAAAATCTTCACTATATGT+TGG	+	chr4_3:42139415-42139434	None:intergenic	30.0%
AACAAAATGGTGTAGTTGAA+AGG	-	chr4_3:42139577-42139596	Msa0641510:CDS	30.0%
GCTTCATCCCAAAAATATTA+AGG	+	chr4_3:42139657-42139676	None:intergenic	30.0%
ATCATCTATAACCACATTGA+TGG	+	chr4_3:42139938-42139957	None:intergenic	30.0%
TGATAAAGAAGAAACTAAGC+AGG	-	chr4_3:42140050-42140069	Msa0641510:intron	30.0%
AAACAAATGACCTTTCATCA+GGG	-	chr4_3:42140095-42140114	Msa0641510:intron	30.0%
ATAATTGGAAGTCTTGATCA+AGG	-	chr4_3:42140144-42140163	Msa0641510:intron	30.0%
ATTCACTTTATTGGATCTTC+TGG	+	chr4_3:42140178-42140197	None:intergenic	30.0%

Showing 1 to 10 of 358 entries

Previous1 2 3 4 5…36Next

Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	42139029	42144498	42139029	ID=Msa0641510;Name=Msa0641510
chr4_3	mRNA	42139029	42144498	42139029	ID=Msa0641510-mRNA-1;Parent=Msa0641510;Name=Msa0641510-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0.5\|0.33\|0.66\|1\|1\|3\|276\|192
chr4_3	exon	42139029	42139643	42139029	ID=Msa0641510-mRNA-1:exon:9483;Parent=Msa0641510-mRNA-1
chr4_3	exon	42140845	42141077	42140845	ID=Msa0641510-mRNA-1:exon:9482;Parent=Msa0641510-mRNA-1
chr4_3	exon	42144492	42144498	42144492	ID=Msa0641510-mRNA-1:exon:9481;Parent=Msa0641510-mRNA-1
chr4_3	CDS	42144492	42144498	42144492	ID=Msa0641510-mRNA-1:cds;Parent=Msa0641510-mRNA-1
chr4_3	CDS	42140845	42141077	42140845	ID=Msa0641510-mRNA-1:cds;Parent=Msa0641510-mRNA-1
chr4_3	CDS	42139305	42139643	42139305	ID=Msa0641510-mRNA-1:cds;Parent=Msa0641510-mRNA-1
chr4_3	three_prime_UTR	42139029	42139304	42139029	ID=Msa0641510-mRNA-1:three_prime_utr;Parent=Msa0641510-mRNA-1

Gene Sequence

>Msa0641510

ATGACAGGTCAAGAGAGAGAAGCAAGGGGAGGGAGACCTAATAGAACTACTGCTTGTGGGTATTGGAAGGCAACAGGTTCTCCTGGTTATGTTTATTCTTCGGATAACAAAGTTATTGGGGTGAAAAAAACCATGGTGTTCTATAAAGGAAAAGCTCCAAGTGGAAGGAAAACAAAATGGAAGATGAATGAATACAGAGCCATTCAAGTATCTAACCAATCCAACACTGCCACACCTCAGTTGAGGAGAGAATTCAGTTTGTGTCGAGTGTATGTAATATCGGGAAGCTTTCGAGCATTTGATAGACGTCCATTAGAGAGAGAAAGAGTTGATCAATTACGGGTTAATGAGATTGATCAAAACCCATTTGGTGCCACATCTACTCATCAGGATGCAACAAGTTCATTTGAAATTTCTCAATTAGGGGGACTCCAAAGTAATCATATGCCACTAGAGGTTGTAGGAGGTTCAAATAGCACAAATTGGCATGTAAATAGTAACAATGAAAATAATGGTGATGAGGTTCAATTCCAAGAATCACTATGGGAATGGGACAGTGAACATTTTAATTGGTCCTAA

Protein sequence

>Msa0641510

MTGQEREARGGRPNRTTACGYWKATGSPGYVYSSDNKVIGVKKTMVFYKGKAPSGRKTKWKMNEYRAIQVSNQSNTATPQLRREFSLCRVYVISGSFRAFDRRPLERERVDQLRVNEIDQNPFGATSTHQDATSSFEISQLGGLQSNHMPLEVVGGSNSTNWHVNSNNENNGDEVQFQESLWEWDSEHFNWS*