AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1453190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1453190 MtrunA17_Chr4g0026141 96.552 261 9 0 1 261 1 261 0.0 526
Msa1453190 MtrunA17_Chr2g0321631 61.686 261 77 8 6 260 5 248 1.21e-106 308
Msa1453190 MtrunA17_Chr7g0266701 61.582 177 65 2 3 176 2 178 2.67e-76 232
Msa1453190 MtrunA17_Chr5g0398971 34.167 240 136 8 6 240 8 230 2.33e-39 139
Msa1453190 MtrunA17_Chr2g0309891 45.223 157 80 5 4 160 5 155 3.10e-39 139
Msa1453190 MtrunA17_Chr5g0417791 44.586 157 80 4 5 160 3 153 4.02e-39 137
Msa1453190 MtrunA17_Chr6g0453131 39.037 187 102 4 3 183 13 193 7.85e-39 139
Msa1453190 MtrunA17_Chr1g0200561 44.375 160 81 4 1 160 15 166 8.08e-39 138
Msa1453190 MtrunA17_Chr4g0038751 40.449 178 91 5 7 182 17 181 9.62e-39 137
Msa1453190 MtrunA17_Chr4g0076731 43.558 163 82 3 2 164 51 203 3.69e-38 138
Msa1453190 MtrunA17_Chr4g0018391 44.937 158 73 6 6 160 8 154 5.28e-38 136
Msa1453190 MtrunA17_Chr2g0326361 46.250 160 75 5 4 159 13 165 7.65e-38 135
Msa1453190 MtrunA17_Chr5g0433781 43.590 156 81 4 4 159 5 153 1.25e-37 139
Msa1453190 MtrunA17_Chr6g0481091 43.125 160 84 4 5 164 6 158 1.73e-37 132
Msa1453190 MtrunA17_Chr4g0042561 43.312 157 82 4 5 160 9 159 2.02e-37 132
Msa1453190 MtrunA17_Chr8g0372121 46.711 152 68 5 1 149 2 143 6.28e-37 132
Msa1453190 MtrunA17_Chr8g0359921 42.767 159 80 5 4 160 13 162 9.33e-37 132
Msa1453190 MtrunA17_Chr5g0405211 43.558 163 78 5 1 160 4 155 1.06e-36 132
Msa1453190 MtrunA17_Chr3g0130731 40.237 169 94 3 2 170 4 165 1.40e-36 131
Msa1453190 MtrunA17_Chr3g0109821 35.268 224 120 7 4 227 5 203 3.80e-36 135
Msa1453190 MtrunA17_Chr8g0361731 39.521 167 89 4 1 160 10 171 4.64e-36 132
Msa1453190 MtrunA17_Chr8g0384721 40.351 171 93 5 5 173 7 170 5.04e-36 129
Msa1453190 MtrunA17_Chr3g0124761 41.916 167 86 4 2 166 4 161 1.59e-35 128
Msa1453190 MtrunA17_Chr3g0144271 42.857 161 85 4 2 161 20 174 2.86e-35 130
Msa1453190 MtrunA17_Chr1g0147421 39.053 169 93 3 2 169 24 183 4.56e-35 129
Msa1453190 MtrunA17_Chr2g0309331 45.255 137 67 3 2 135 7 138 9.64e-35 127
Msa1453190 MtrunA17_Chr6g0484441 41.875 160 82 6 1 160 1 149 2.17e-34 126
Msa1453190 MtrunA17_Chr3g0139331 39.645 169 91 4 2 169 8 166 2.85e-34 126
Msa1453190 MtrunA17_Chr6g0453451 40.936 171 92 5 5 174 20 182 3.14e-34 125
Msa1453190 MtrunA17_Chr4g0056541 37.566 189 90 7 6 191 8 171 3.18e-34 126
Msa1453190 MtrunA17_Chr7g0252971 40.120 167 82 5 5 160 8 167 3.37e-34 126
Msa1453190 MtrunA17_Chr2g0318081 42.138 159 79 6 4 160 15 162 3.48e-34 126
Msa1453190 MtrunA17_Chr7g0263931 39.594 197 104 7 2 191 8 196 3.73e-34 125
Msa1453190 MtrunA17_Chr8g0346001 37.634 186 101 6 6 182 16 195 7.38e-34 127
Msa1453190 MtrunA17_Chr5g0417001 44.118 136 70 3 1 135 10 140 8.53e-34 126
Msa1453190 MtrunA17_Chr2g0316971 46.970 132 64 3 5 135 23 149 8.55e-34 125
Msa1453190 MtrunA17_Chr4g0047841 40.223 179 77 6 5 160 15 186 1.37e-33 124
Msa1453190 MtrunA17_Chr5g0400461 41.758 182 89 6 4 179 5 175 2.19e-33 124
Msa1453190 MtrunA17_Chr8g0345671 44.231 156 73 5 6 159 12 155 6.91e-33 124
Msa1453190 MtrunA17_Chr3g0091921 41.875 160 80 5 4 160 15 164 1.07e-32 121
Msa1453190 MtrunA17_Chr2g0318101 39.267 191 90 8 5 182 15 192 1.12e-32 122
Msa1453190 MtrunA17_Chr2g0311661 36.652 221 113 10 2 209 17 223 2.54e-32 120
Msa1453190 MtrunA17_Chr1g0183741 38.750 160 81 5 4 160 9 154 2.88e-32 119
Msa1453190 MtrunA17_Chr8g0345691 39.873 158 83 4 3 159 10 156 4.98e-32 121
Msa1453190 MtrunA17_Chr4g0054791 41.772 158 84 5 4 159 5 156 5.19e-32 119
Msa1453190 MtrunA17_Chr4g0060931 40.881 159 81 5 5 160 17 165 6.36e-32 120
Msa1453190 MtrunA17_Chr2g0311651 39.362 188 94 9 2 174 18 200 9.30e-32 119
Msa1453190 MtrunA17_Chr5g0428991 42.038 157 82 5 5 160 25 173 1.08e-31 122
Msa1453190 MtrunA17_Chr7g0261411 38.750 160 81 5 4 160 9 154 2.75e-31 117
Msa1453190 MtrunA17_Chr7g0217711 41.379 145 79 3 5 149 19 157 3.19e-31 114
Msa1453190 MtrunA17_Chr4g0017921 40.000 165 84 5 6 167 9 161 3.89e-31 118
Msa1453190 MtrunA17_Chr8g0385991 40.625 160 85 4 5 161 14 166 6.01e-31 114
Msa1453190 MtrunA17_Chr3g0128111 39.869 153 85 4 8 160 45 190 8.87e-31 114
Msa1453190 MtrunA17_Chr3g0128151 40.252 159 86 5 3 160 20 170 9.99e-31 120
Msa1453190 MtrunA17_Chr3g0130101 39.241 158 89 5 7 164 9 159 1.12e-30 117
Msa1453190 MtrunA17_Chr7g0217721 45.038 131 66 3 5 135 19 143 1.23e-30 117
Msa1453190 MtrunA17_Chr2g0312321 39.264 163 83 6 1 160 7 156 2.30e-30 115
Msa1453190 MtrunA17_Chr1g0197351 40.625 160 88 4 4 160 41 196 3.12e-30 117
Msa1453190 MtrunA17_Chr7g0214071 39.752 161 83 5 2 161 12 159 3.30e-30 113
Msa1453190 MtrunA17_Chr1g0197361 37.736 159 92 3 7 165 10 161 3.50e-30 118
Msa1453190 MtrunA17_Chr3g0092671 40.252 159 88 4 7 165 7 158 3.55e-30 118
Msa1453190 MtrunA17_Chr6g0461661 44.361 133 66 4 5 135 18 144 1.14e-29 114
Msa1453190 MtrunA17_Chr8g0345711 40.411 146 82 4 1 145 8 149 2.77e-29 108
Msa1453190 MtrunA17_Chr7g0253011 41.045 134 71 3 5 135 17 145 2.94e-28 110
Msa1453190 MtrunA17_Chr5g0442771 40.719 167 76 8 7 160 20 176 8.27e-28 108
Msa1453190 MtrunA17_Chr3g0131911 40.964 166 77 7 5 160 14 168 2.06e-27 105
Msa1453190 MtrunA17_Chr8g0364791 35.714 154 92 4 7 160 8 154 1.14e-26 107
Msa1453190 MtrunA17_Chr8g0345721 34.463 177 82 5 1 144 26 201 1.28e-26 102
Msa1453190 MtrunA17_Chr1g0201021 44.961 129 65 4 7 134 21 144 3.14e-26 107
Msa1453190 MtrunA17_Chr8g0345731 40.146 137 75 4 3 135 22 155 5.86e-26 100
Msa1453190 MtrunA17_Chr8g0384201 35.443 158 95 5 7 164 8 158 8.11e-25 102
Msa1453190 MtrunA17_Chr8g0345701 38.926 149 69 6 4 136 6 148 2.76e-24 95.9
Msa1453190 MtrunA17_Chr8g0345741 38.843 121 70 3 16 135 2 119 1.66e-23 93.2
Msa1453190 MtrunA17_Chr4g0050701 36.875 160 84 5 5 160 11 157 4.56e-22 90.5
Msa1453190 MtrunA17_Chr2g0321741 44.954 109 55 4 26 134 13 116 1.32e-21 92.4
Msa1453190 MtrunA17_Chr3g0130321 30.857 175 102 4 1 166 1 165 1.01e-17 79.3
Msa1453190 MtrunA17_Chr3g0113001 46.154 78 41 1 58 135 13 89 1.89e-17 80.1
Msa1453190 MtrunA17_Chr3g0113031 45.783 83 43 2 79 160 9 90 4.29e-15 73.2
Msa1453190 MtrunA17_Chr7g0243371 38.372 86 52 1 51 135 5 90 1.82e-14 68.2
Msa1453190 MtrunA17_Chr8g0384351 32.692 156 76 8 5 160 10 136 1.31e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1453190 AT3G44350.2 50.000 262 109 6 1 261 1 241 5.45e-83 249
Msa1453190 AT5G22380.1 55.365 233 96 4 1 231 1 227 3.48e-82 246
Msa1453190 AT3G44350.1 57.764 161 66 1 1 161 1 159 1.30e-64 199
Msa1453190 AT2G17040.1 36.652 221 115 7 2 214 3 206 9.70e-41 142
Msa1453190 AT1G71930.2 41.573 178 86 5 1 178 5 164 2.53e-39 139
Msa1453190 AT1G71930.1 41.573 178 86 5 1 178 5 164 2.53e-39 139
Msa1453190 AT4G17980.1 45.223 157 81 5 4 159 5 157 4.62e-39 137
Msa1453190 AT4G17980.2 45.223 157 81 5 4 159 5 157 6.02e-39 137
Msa1453190 AT2G02450.1 43.506 154 77 3 7 160 53 196 6.40e-38 137
Msa1453190 AT2G02450.2 43.506 154 77 3 7 160 53 196 7.77e-38 137
Msa1453190 AT1G69490.1 42.073 164 88 4 2 164 6 163 7.87e-38 134
Msa1453190 AT1G65910.1 43.312 157 82 4 4 160 5 154 1.31e-37 140
Msa1453190 AT5G66300.1 31.429 280 147 10 4 253 11 275 2.30e-37 133
Msa1453190 AT1G76420.1 42.771 166 83 5 2 165 19 174 8.53e-37 133
Msa1453190 AT3G17730.1 41.875 160 86 4 5 164 6 158 1.06e-36 130
Msa1453190 AT4G36160.1 41.954 174 78 6 4 174 9 162 1.09e-36 134
Msa1453190 AT4G36160.3 41.954 174 78 6 4 174 9 162 1.09e-36 134
Msa1453190 AT4G36160.2 41.954 174 78 6 4 174 13 166 1.31e-36 133
Msa1453190 AT4G27410.2 42.767 159 78 5 4 160 13 160 1.58e-36 131
Msa1453190 AT5G17260.1 42.038 157 85 4 4 160 5 155 1.76e-36 135
Msa1453190 AT5G46590.1 43.226 155 83 4 5 159 6 155 4.02e-36 130
Msa1453190 AT2G18060.3 43.125 160 77 5 4 160 8 156 4.62e-36 132
Msa1453190 AT2G18060.1 43.125 160 77 5 4 160 8 156 4.62e-36 132
Msa1453190 AT1G01720.1 34.363 259 143 7 5 246 7 255 4.99e-36 130
Msa1453190 AT1G26870.1 47.794 136 65 3 1 135 12 142 6.61e-36 132
Msa1453190 AT1G33060.2 43.038 158 83 4 3 160 22 172 1.37e-35 134
Msa1453190 AT1G33060.1 43.038 158 83 4 3 160 22 172 1.47e-35 134
Msa1453190 AT4G35580.1 44.304 158 81 5 3 160 7 157 2.34e-35 132
Msa1453190 AT5G62380.2 40.385 156 85 4 5 160 7 154 2.37e-35 129
Msa1453190 AT5G62380.1 40.385 156 85 4 5 160 7 154 2.37e-35 129
Msa1453190 AT4G35580.3 44.304 158 81 5 3 160 7 157 2.68e-35 132
Msa1453190 AT4G35580.2 44.304 158 81 5 3 160 7 157 2.74e-35 132
Msa1453190 AT3G15500.1 42.767 159 78 5 4 160 13 160 3.04e-35 128
Msa1453190 AT1G12260.2 43.671 158 75 6 6 160 8 154 3.49e-35 129
Msa1453190 AT2G24430.2 41.875 160 83 5 2 160 13 163 4.08e-35 128
Msa1453190 AT2G24430.1 41.875 160 83 5 2 160 13 163 4.08e-35 128
Msa1453190 AT4G27410.3 40.588 170 83 6 4 160 13 177 4.93e-35 128
Msa1453190 AT1G79580.3 40.828 169 86 4 4 169 16 173 5.64e-35 129
Msa1453190 AT1G79580.5 40.828 169 86 4 4 169 16 173 5.64e-35 129
Msa1453190 AT1G79580.4 40.828 169 86 4 4 169 16 173 5.64e-35 129
Msa1453190 AT1G79580.2 40.828 169 86 4 4 169 16 173 5.64e-35 129
Msa1453190 AT1G79580.1 40.828 169 86 4 4 169 16 173 5.64e-35 129
Msa1453190 AT1G12260.1 43.671 158 75 6 6 160 8 154 5.85e-35 129
Msa1453190 AT5G39820.1 41.892 148 80 3 2 148 17 159 8.94e-35 127
Msa1453190 AT5G24590.2 42.038 157 85 3 4 160 12 162 1.21e-34 129
Msa1453190 AT1G52890.1 42.138 159 79 5 4 160 13 160 1.28e-34 127
Msa1453190 AT1G62700.1 42.405 158 77 6 6 160 8 154 1.61e-34 128
Msa1453190 AT1G62700.2 42.405 158 77 6 6 160 8 154 1.61e-34 128
Msa1453190 AT1G61110.1 40.107 187 92 6 5 179 16 194 2.56e-34 126
Msa1453190 AT3G03200.1 35.610 205 118 6 4 208 5 195 2.66e-34 129
Msa1453190 AT3G18400.1 40.000 160 86 4 1 160 1 150 8.10e-34 124
Msa1453190 AT1G77450.1 41.772 158 81 4 5 160 10 158 1.00e-33 123
Msa1453190 AT5G08790.1 41.011 178 91 6 2 173 4 173 1.52e-33 123
Msa1453190 AT3G10480.1 40.764 157 87 4 4 160 26 176 1.63e-33 126
Msa1453190 AT3G61910.1 44.776 134 65 4 5 135 11 138 1.78e-33 124
Msa1453190 AT5G61430.1 41.509 159 80 5 5 160 16 164 2.07e-33 124
Msa1453190 AT5G46590.2 46.565 131 67 3 5 135 6 133 2.99e-33 122
Msa1453190 AT1G54330.1 40.764 157 83 4 4 160 5 151 3.85e-33 122
Msa1453190 AT3G10480.2 40.764 157 86 4 4 160 26 175 3.91e-33 125
Msa1453190 AT1G56010.2 39.375 160 92 3 1 160 15 169 4.53e-33 123
Msa1453190 AT3G10490.1 40.764 157 87 4 4 160 26 176 4.76e-33 120
Msa1453190 AT2G46770.1 45.522 134 64 4 5 135 16 143 5.78e-33 123
Msa1453190 AT3G15170.1 40.244 164 91 4 2 164 17 174 7.52e-33 122
Msa1453190 AT3G04070.2 41.071 168 80 7 4 160 9 168 1.35e-32 122
Msa1453190 AT1G32510.1 39.130 161 87 5 5 159 6 161 3.42e-32 119
Msa1453190 AT5G63790.1 39.412 170 94 4 2 169 47 209 4.23e-32 120
Msa1453190 AT3G49530.2 38.608 158 91 4 3 160 11 162 4.98e-32 122
Msa1453190 AT5G63790.2 39.412 170 94 4 2 169 57 219 5.26e-32 120
Msa1453190 AT1G32770.1 40.223 179 88 8 6 173 17 187 6.39e-32 120
Msa1453190 AT4G10350.1 39.645 169 88 6 6 170 10 168 7.97e-32 120
Msa1453190 AT3G29035.1 38.426 216 106 10 5 216 24 216 8.38e-32 119
Msa1453190 AT3G49530.1 38.608 158 91 4 3 160 11 162 1.17e-31 122
Msa1453190 AT5G39610.1 40.881 159 81 5 5 160 20 168 1.66e-31 118
Msa1453190 AT5G07680.1 39.623 159 83 5 5 160 17 165 2.31e-31 118
Msa1453190 AT5G07680.2 39.623 159 83 5 5 160 3 151 2.37e-31 118
Msa1453190 AT3G10490.2 40.764 157 87 4 4 160 26 176 2.48e-31 120
Msa1453190 AT3G10500.1 39.506 162 91 4 4 165 8 162 2.73e-31 121
Msa1453190 AT5G53950.1 47.368 133 62 4 5 135 17 143 2.98e-31 119
Msa1453190 AT3G04070.1 43.478 138 65 4 4 135 9 139 3.14e-31 119
Msa1453190 AT1G33280.1 38.650 163 91 4 6 168 9 162 7.83e-31 116
Msa1453190 AT3G12910.1 42.614 176 82 8 7 169 23 192 1.26e-30 116
Msa1453190 AT3G15510.1 40.571 175 82 7 9 170 21 186 1.32e-30 117
Msa1453190 AT3G12977.1 37.791 172 95 6 1 170 14 175 1.58e-30 115
Msa1453190 AT5G18270.2 38.854 157 88 4 5 160 21 170 1.59e-30 116
Msa1453190 AT5G18270.1 38.854 157 88 4 5 160 21 170 3.39e-30 115
Msa1453190 AT3G04060.1 38.889 162 81 5 5 160 20 169 3.39e-30 115
Msa1453190 AT5G13180.1 41.772 158 79 5 5 161 14 159 8.08e-30 112
Msa1453190 AT5G04410.1 39.130 161 91 5 4 164 8 161 1.37e-29 117
Msa1453190 AT3G44290.2 41.781 146 79 5 7 152 16 155 2.97e-29 110
Msa1453190 AT5G22290.1 40.940 149 83 4 4 152 20 163 6.56e-29 112
Msa1453190 AT5G04395.1 41.379 145 71 5 2 134 25 167 6.63e-29 108
Msa1453190 AT1G34180.3 43.750 128 68 3 7 134 18 141 6.68e-29 114
Msa1453190 AT2G33480.1 40.764 157 81 5 5 161 15 159 7.36e-29 110
Msa1453190 AT2G33480.2 39.490 157 81 4 5 161 15 157 1.07e-28 110
Msa1453190 AT3G10480.3 35.450 189 85 5 4 160 26 209 1.20e-28 114
Msa1453190 AT2G43000.1 38.065 155 86 5 7 160 20 165 1.44e-28 110
Msa1453190 AT1G34180.1 43.750 128 68 3 7 134 18 141 1.53e-28 114
Msa1453190 AT3G44290.1 41.781 146 79 5 7 152 16 155 1.92e-28 110
Msa1453190 AT4G01550.1 38.312 154 83 3 8 159 7 150 2.03e-28 112
Msa1453190 AT4G28530.1 35.754 179 74 6 5 160 10 170 6.56e-28 110
Msa1453190 AT1G34190.1 42.969 128 69 3 7 134 18 141 1.34e-27 111
Msa1453190 AT2G27300.1 39.726 146 82 4 7 152 16 155 1.35e-27 108
Msa1453190 AT5G09330.5 43.411 129 69 3 7 135 8 132 3.55e-27 109
Msa1453190 AT5G09330.2 43.411 129 69 3 7 135 8 132 3.55e-27 109
Msa1453190 AT5G09330.4 43.411 129 69 3 7 135 8 132 3.55e-27 109
Msa1453190 AT5G09330.3 43.411 129 69 3 7 135 8 132 3.55e-27 109
Msa1453190 AT5G09330.1 43.411 129 69 3 7 135 8 132 3.55e-27 109
Msa1453190 AT1G34180.4 39.855 138 71 3 7 134 18 153 2.96e-26 107
Msa1453190 AT5G64060.1 38.037 163 84 7 7 164 8 158 4.96e-26 105
Msa1453190 AT1G34180.2 39.855 138 71 3 7 134 18 153 5.39e-26 106
Msa1453190 AT4G01520.1 37.580 157 85 5 6 159 5 151 1.06e-25 103
Msa1453190 AT3G04420.2 35.152 165 94 5 6 169 4 156 7.21e-25 100
Msa1453190 AT4G01540.4 38.065 155 83 5 8 159 7 151 1.35e-24 101
Msa1453190 AT3G04420.1 35.152 165 94 5 6 169 4 156 1.84e-24 100
Msa1453190 AT4G01540.2 38.065 155 83 5 8 159 7 151 2.60e-24 101
Msa1453190 AT4G01540.3 38.065 155 83 5 8 159 7 151 2.74e-24 100
Msa1453190 AT4G01540.1 38.065 155 83 5 8 159 7 151 4.50e-24 100
Msa1453190 AT1G52880.1 38.889 162 82 5 9 160 21 175 6.95e-24 98.6
Msa1453190 AT1G32870.2 36.025 161 96 5 5 165 10 163 1.79e-22 96.7
Msa1453190 AT1G32870.1 36.025 161 96 5 5 165 10 163 2.06e-22 96.3
Msa1453190 AT1G02250.1 35.032 157 87 5 6 159 4 148 2.17e-22 95.1
Msa1453190 AT1G32870.3 36.025 161 96 5 5 165 46 199 3.43e-22 95.9
Msa1453190 AT1G02230.1 35.669 157 86 5 6 159 4 148 8.53e-22 93.2
Msa1453190 AT1G56010.1 41.237 97 56 1 64 160 7 102 2.66e-19 84.7
Msa1453190 AT3G12977.2 38.261 115 66 3 57 170 12 122 6.54e-19 83.2
Msa1453190 AT5G64530.2 39.695 131 61 7 5 134 3 116 9.85e-19 80.9
Msa1453190 AT5G64530.1 40.152 132 59 7 5 134 3 116 1.28e-18 81.6
Msa1453190 AT5G61430.2 38.679 106 57 3 58 160 1 101 6.12e-18 81.6
Msa1453190 AT1G01010.1 32.335 167 91 6 1 159 1 153 7.70e-18 82.8
Msa1453190 AT1G02220.1 31.902 163 95 6 6 167 4 151 1.67e-17 81.6
Msa1453190 AT4G10350.2 34.328 134 74 4 63 195 18 138 8.88e-17 78.6
Msa1453190 AT4G28530.2 38.739 111 39 3 5 95 10 111 3.93e-16 77.0
Msa1453190 AT2G33480.3 41.237 97 53 3 65 161 10 102 1.11e-15 73.9
Msa1453190 AT3G04430.1 36.364 110 66 2 11 120 6 111 2.01e-14 70.5
Msa1453190 AT5G50820.1 31.056 161 95 5 5 162 17 164 8.95e-14 68.6
Msa1453190 AT3G56530.1 29.560 159 102 7 4 161 51 200 1.69e-13 69.7
Msa1453190 AT3G10490.4 41.026 78 43 2 83 160 2 76 1.60e-12 67.0
Msa1453190 AT3G10490.3 41.026 78 43 2 83 160 2 76 1.60e-12 67.0
Msa1453190 AT2G43000.2 41.975 81 42 3 81 160 11 87 2.20e-12 64.7
Msa1453190 AT2G18060.2 42.466 73 36 2 88 160 2 68 4.51e-12 65.1
Msa1453190 AT5G14000.2 31.061 132 81 5 5 134 15 138 2.06e-11 61.2
Msa1453190 AT5G14000.1 30.303 132 82 4 5 134 15 138 5.72e-11 60.8

Find 81 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATTTGAAATTTCTCAATT+AGG 0.161327 tig0034523:-1325 Msa1453190:CDS
TCTTCGGATAACAAAGTTAT+TGG 0.171109 tig0034523:-2267 Msa1453190:CDS
CATTTGAAATTTCTCAATTA+GGG 0.213508 tig0034523:-1324 Msa1453190:CDS
CCCATTCCCATAGTGATTCT+TGG 0.233146 tig0034523:+1197 Msa1453190:intergenic
CTTCGGATAACAAAGTTATT+GGG 0.268350 tig0034523:-2266 Msa1453190:CDS
TTAACTCTTTCTCTCTCTAA+TGG 0.304088 tig0034523:+1418 Msa1453190:intergenic
ACCATGAGCTGGAGTTAATT+AGG 0.306112 tig0034523:+1153 Msa1453190:intergenic
TTCAATTCCAAGAATCACTA+TGG 0.318489 tig0034523:-1204 Msa1453190:CDS
AAAACCATGGTGTTCTATAA+AGG 0.328853 tig0034523:-2237 Msa1453190:CDS
TCCTGGTTATGTTTATTCTT+CGG 0.357166 tig0034523:-2283 Msa1453190:CDS
AATAGTAACAATGAAAATAA+TGG 0.367657 tig0034523:-1235 Msa1453190:CDS
GAACTACTGCTTGTGGGTAT+TGG 0.373733 tig0034523:-2320 Msa1453190:CDS
CCACAAGCAGTAGTTCTATT+AGG 0.380796 tig0034523:+2327 Msa1453190:intergenic
CAAGTGGAAGGAAAACAAAA+TGG 0.388513 tig0034523:-2206 Msa1453190:CDS
GCCAAACAAGTGCTATAGAT+AGG 0.402516 tig0034523:-2711 Msa1453190:CDS
AGAAAGAGTTAATCAATTAC+CGG 0.404391 tig0034523:-1407 Msa1453190:CDS
GTAGAATTCAATTAATTCAA+TGG 0.406518 tig0034523:-2815 Msa1453190:exon
ACCATTGCTCTTTATCTTCG+CGG 0.411304 tig0034523:+2394 Msa1453190:intergenic
CCCTATCTATAGCACTTGTT+TGG 0.413662 tig0034523:+2710 Msa1453190:intergenic
TGTCGAGTGTATGTAATATC+AGG 0.421062 tig0034523:-1466 Msa1453190:CDS
CTTGCTTCTCTCTCTTGACC+TGG 0.421832 tig0034523:+2360 Msa1453190:intergenic
GAGATTGATCAAAATCCATT+TGG 0.424069 tig0034523:-1379 Msa1453190:CDS
TCATCATATTTGTTTAGAAT+AGG 0.449047 tig0034523:-1019 Msa1453190:three_prime_UTR
TGTGGGTATTGGAAGGCAAC+AGG 0.456765 tig0034523:-2309 Msa1453190:CDS
ATTCCAGTCATTGACATCAA+TGG 0.463355 tig0034523:-2685 Msa1453190:CDS
TATCTAAATAATAAATTACA+AGG 0.468522 tig0034523:-2733 Msa1453190:CDS
CTAGTGGCATATGATTACTT+TGG 0.471161 tig0034523:+1296 Msa1453190:intergenic
TGGTGCCACATCTACTCATC+AGG 0.471854 tig0034523:-1359 Msa1453190:CDS
TACTTACTTGGGAGGTTCCA+TGG 0.472632 tig0034523:+2655 Msa1453190:intergenic
TCCAAGAATCACTATGGGAA+TGG 0.475257 tig0034523:-1198 Msa1453190:CDS
GAGTCGTGTTTATACTTGAC+GGG 0.475871 tig0034523:+1112 Msa1453190:intergenic
GAGGTTCAAATAGCACAAAT+TGG 0.477207 tig0034523:-1264 Msa1453190:CDS
CCAAGAATCACTATGGGAAT+GGG 0.486561 tig0034523:-1197 Msa1453190:CDS
CTAACAAGCTCTTCTTCAGT+TGG 0.487944 tig0034523:+2760 Msa1453190:intergenic
TAACAAGCTCTTCTTCAGTT+GGG 0.488303 tig0034523:+2761 Msa1453190:intergenic
TGGAAGGCAACAGGTTCTCC+TGG 0.494297 tig0034523:-2300 Msa1453190:CDS
CTAATAGAACTACTGCTTGT+GGG 0.501976 tig0034523:-2326 Msa1453190:CDS
TTGTTAGTTGAGTTAGAACT+TGG 0.507673 tig0034523:+884 Msa1453190:intergenic
TGAGTAGATGTGGCACCAAA+TGG 0.509329 tig0034523:+1364 Msa1453190:intergenic
CATATGCCACTAGAGGTTGT+AGG 0.515500 tig0034523:-1286 Msa1453190:CDS
AGGTCAAGAGAGAGAAGCAA+GGG 0.520943 tig0034523:-2358 Msa1453190:CDS
GAGGTGTGGCAGTGTTGGAT+TGG 0.521829 tig0034523:+2148 Msa1453190:intergenic
GGATTGGTTAGATACTTGAA+TGG 0.527741 tig0034523:+2164 Msa1453190:intergenic
CCAAACAAGTGCTATAGATA+GGG 0.540158 tig0034523:-2710 Msa1453190:CDS
AAGAGAGAGAAGCAAGGGGA+GGG 0.540485 tig0034523:-2353 Msa1453190:CDS
TATTAATGTACTTACTTGGG+AGG 0.544087 tig0034523:+2647 Msa1453190:intergenic
TGATGTTTAAATTTATTGTG+AGG 0.545151 tig0034523:+939 Msa1453190:intergenic
TACCTGAGGTGTGGCAGTGT+TGG 0.546731 tig0034523:+2143 Msa1453190:intergenic
CGAGTCGTGTTTATACTTGA+CGG 0.546832 tig0034523:+1111 Msa1453190:intergenic
TTGAGTATCCCACCATGAGC+TGG 0.552044 tig0034523:+1142 Msa1453190:intergenic
ACACCATTGATGTCAATGAC+TGG 0.555788 tig0034523:+2682 Msa1453190:intergenic
ATCCAACACTGCCACACCTC+AGG 0.560321 tig0034523:-2145 Msa1453190:intron
TTTGAAATTTCTCAATTAGG+GGG 0.567316 tig0034523:-1322 Msa1453190:CDS
TTCGGATAACAAAGTTATTG+GGG 0.568678 tig0034523:-2265 Msa1453190:CDS
CAATGAAAATAATGGTGATG+AGG 0.574582 tig0034523:-1227 Msa1453190:CDS
CAAGAGAGAGAAGCAAGGGG+AGG 0.575212 tig0034523:-2354 Msa1453190:CDS
AAGGAAAAGCTCCAAGTGGA+AGG 0.577529 tig0034523:-2218 Msa1453190:CDS
CCTAATAGAACTACTGCTTG+TGG 0.583756 tig0034523:-2327 Msa1453190:CDS
TCCTAATTAACTCCAGCTCA+TGG 0.586586 tig0034523:-1154 Msa1453190:exon
ATGGAAGATACCTTCCCACC+TGG 0.589454 tig0034523:-2796 Msa1453190:CDS
ATTTGAAATTTCTCAATTAG+GGG 0.591470 tig0034523:-1323 Msa1453190:CDS
TCCGAAGAATAAACATAACC+AGG 0.594367 tig0034523:+2282 Msa1453190:intergenic
TACTGCTTGTGGGTATTGGA+AGG 0.594408 tig0034523:-2316 Msa1453190:CDS
TCAATTCCAAGAATCACTAT+GGG 0.601158 tig0034523:-1203 Msa1453190:CDS
GAAACGAAAACCAGGTGGGA+AGG 0.608858 tig0034523:+2786 Msa1453190:intergenic
GCCGCGAAGATAAAGAGCAA+TGG 0.609204 tig0034523:-2395 Msa1453190:CDS
AATTAACTCCAGCTCATGGT+GGG 0.625503 tig0034523:-1150 Msa1453190:three_prime_UTR
CAGGTCAAGAGAGAGAAGCA+AGG 0.633366 tig0034523:-2359 Msa1453190:CDS
AAGTAATCATATGCCACTAG+AGG 0.633670 tig0034523:-1293 Msa1453190:CDS
GAACCTCCTACAACCTCTAG+TGG 0.635358 tig0034523:+1280 Msa1453190:intergenic
ACATCAATGGTGTAGAACCA+TGG 0.640791 tig0034523:-2672 Msa1453190:CDS
GTTGGGAAGAAACGAAAACC+AGG 0.640908 tig0034523:+2778 Msa1453190:intergenic
TAATTAACTCCAGCTCATGG+TGG 0.645643 tig0034523:-1151 Msa1453190:three_prime_UTR
TATAAAGGAAAAGCTCCAAG+TGG 0.670306 tig0034523:-2222 Msa1453190:CDS
ATGCCACTAGAGGTTGTAGG+AGG 0.675101 tig0034523:-1283 Msa1453190:CDS
TGCATCCTGATGAGTAGATG+TGG 0.677636 tig0034523:+1354 Msa1453190:intergenic
GGTCAAGAGAGAGAAGCAAG+GGG 0.681277 tig0034523:-2357 Msa1453190:CDS
AGTCGTGTTTATACTTGACG+GGG 0.694889 tig0034523:+1113 None:intergenic
GGGAAGAAACGAAAACCAGG+TGG 0.697514 tig0034523:+2781 None:intergenic
GGAAGAAACGAAAACCAGGT+GGG 0.702147 tig0034523:+2782 None:intergenic
TGCAATATATACCTGAGGTG+TGG 0.718087 tig0034523:+2134 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATCTAAATAATAAATTACA+AGG - tig0034523:985-1004 Msa1453190:three_prime_UTR 10.0%
!!! TATACTATTGTTTTATTTAT+AGG + tig0034523:1782-1801 Msa1453190:intergenic 10.0%
!!! AAATCTTATTTAATCAATTA+TGG + tig0034523:1899-1918 Msa1453190:intergenic 10.0%
!!! AAAATTTTCAAAAACAAAAA+AGG - tig0034523:1989-2008 Msa1453190:intron 10.0%
!! TATCTAAATAATAAATTACA+AGG - tig0034523:985-1004 Msa1453190:three_prime_UTR 10.0%
!!! TATACTATTGTTTTATTTAT+AGG + tig0034523:1782-1801 Msa1453190:intergenic 10.0%
!!! AAATCTTATTTAATCAATTA+TGG + tig0034523:1899-1918 Msa1453190:intergenic 10.0%
!!! AAAATTTTCAAAAACAAAAA+AGG - tig0034523:1989-2008 Msa1453190:intron 10.0%
!! TTATATTAATGTACTTACTT+GGG + tig0034523:1077-1096 Msa1453190:intergenic 15.0%
!! TTTATATTAATGTACTTACT+TGG + tig0034523:1078-1097 Msa1453190:intergenic 15.0%
!! TAATAATTAAGGTATACAAT+AGG - tig0034523:1632-1651 Msa1453190:intron 15.0%
!! AAACTGAAAATTAACATATA+TGG - tig0034523:1722-1741 Msa1453190:intron 15.0%
!!! TTGTTGTTTTTTTAGTTTAA+AGG + tig0034523:2116-2135 Msa1453190:intergenic 15.0%
!!! TAAATTTAGCTTTTGTTTTT+TGG - tig0034523:2198-2217 Msa1453190:CDS 15.0%
!! AATAGTAACAATGAAAATAA+TGG - tig0034523:2483-2502 Msa1453190:intron 15.0%
!! TTATATTAATGTACTTACTT+GGG + tig0034523:1077-1096 Msa1453190:intergenic 15.0%
!! TTTATATTAATGTACTTACT+TGG + tig0034523:1078-1097 Msa1453190:intergenic 15.0%
!! TAATAATTAAGGTATACAAT+AGG - tig0034523:1632-1651 Msa1453190:intron 15.0%
!! AAACTGAAAATTAACATATA+TGG - tig0034523:1722-1741 Msa1453190:intron 15.0%
!!! TTGTTGTTTTTTTAGTTTAA+AGG + tig0034523:2116-2135 Msa1453190:intergenic 15.0%
!!! TAAATTTAGCTTTTGTTTTT+TGG - tig0034523:2198-2217 Msa1453190:CDS 15.0%
!! AATAGTAACAATGAAAATAA+TGG - tig0034523:2483-2502 Msa1453190:intron 15.0%
!! GTAGAATTCAATTAATTCAA+TGG - tig0034523:903-922 Msa1453190:three_prime_UTR 20.0%
!! TTGTCTATAAAAGAAAGAAA+TGG + tig0034523:1130-1149 Msa1453190:intergenic 20.0%
!!! TTTATAGACAAACTTTTACT+AGG - tig0034523:1139-1158 Msa1453190:three_prime_UTR 20.0%
!!! TAAAAAAAGTATTAACCATG+AGG + tig0034523:1196-1215 Msa1453190:intergenic 20.0%
!! AATCATCAAACTATGTAAAT+CGG + tig0034523:1263-1282 Msa1453190:intergenic 20.0%
!!! CTTGTATGAATTTCATTTTA+AGG + tig0034523:1750-1769 Msa1453190:intergenic 20.0%
!!! TCATTTGAAATTTCTCAATT+AGG - tig0034523:2393-2412 Msa1453190:CDS 20.0%
!!! CATTTGAAATTTCTCAATTA+GGG - tig0034523:2394-2413 Msa1453190:CDS 20.0%
!!! ATTTGAAATTTCTCAATTAG+GGG - tig0034523:2395-2414 Msa1453190:CDS 20.0%
!!! TCATCATATTTGTTTAGAAT+AGG - tig0034523:2699-2718 Msa1453190:CDS 20.0%
!! TGATGTTTAAATTTATTGTG+AGG + tig0034523:2782-2801 Msa1453190:intergenic 20.0%
!! GTAGAATTCAATTAATTCAA+TGG - tig0034523:903-922 Msa1453190:three_prime_UTR 20.0%
!! TTGTCTATAAAAGAAAGAAA+TGG + tig0034523:1130-1149 Msa1453190:intergenic 20.0%
!!! TTTATAGACAAACTTTTACT+AGG - tig0034523:1139-1158 Msa1453190:three_prime_UTR 20.0%
!!! TAAAAAAAGTATTAACCATG+AGG + tig0034523:1196-1215 Msa1453190:intergenic 20.0%
!! AATCATCAAACTATGTAAAT+CGG + tig0034523:1263-1282 Msa1453190:intergenic 20.0%
!!! CTTGTATGAATTTCATTTTA+AGG + tig0034523:1750-1769 Msa1453190:intergenic 20.0%
!!! TCATTTGAAATTTCTCAATT+AGG - tig0034523:2393-2412 Msa1453190:CDS 20.0%
!!! CATTTGAAATTTCTCAATTA+GGG - tig0034523:2394-2413 Msa1453190:CDS 20.0%
!!! ATTTGAAATTTCTCAATTAG+GGG - tig0034523:2395-2414 Msa1453190:CDS 20.0%
!!! TCATCATATTTGTTTAGAAT+AGG - tig0034523:2699-2718 Msa1453190:CDS 20.0%
!! TGATGTTTAAATTTATTGTG+AGG + tig0034523:2782-2801 Msa1453190:intergenic 20.0%
! TCGTCATGATGTAATAATTA+AGG - tig0034523:1621-1640 Msa1453190:intron 25.0%
!! TTTTATGACCAACAAATACT+TGG - tig0034523:1805-1824 Msa1453190:intron 25.0%
! ACATAGTATGAATGACATTT+AGG - tig0034523:1920-1939 Msa1453190:intron 25.0%
! CATAGTATGAATGACATTTA+GGG - tig0034523:1921-1940 Msa1453190:intron 25.0%
!!! TTTTTGGTGTTTTATAGTTG+AGG - tig0034523:2214-2233 Msa1453190:CDS 25.0%
! AGAAAGAGTTAATCAATTAC+CGG - tig0034523:2311-2330 Msa1453190:CDS 25.0%
!! TTTTGATCAATCTCATTAAC+CGG + tig0034523:2333-2352 Msa1453190:intergenic 25.0%
!! TTTGAAATTTCTCAATTAGG+GGG - tig0034523:2396-2415 Msa1453190:CDS 25.0%
!! TCATTTTACCCAAGAAAAAA+AGG - tig0034523:2733-2752 Msa1453190:CDS 25.0%
!!! ACAAAGATCCTTTTTTTCTT+GGG + tig0034523:2744-2763 Msa1453190:intergenic 25.0%
!!! TACAAAGATCCTTTTTTTCT+TGG + tig0034523:2745-2764 Msa1453190:intergenic 25.0%
! TCGTCATGATGTAATAATTA+AGG - tig0034523:1621-1640 Msa1453190:intron 25.0%
!! TTTTATGACCAACAAATACT+TGG - tig0034523:1805-1824 Msa1453190:intron 25.0%
! ACATAGTATGAATGACATTT+AGG - tig0034523:1920-1939 Msa1453190:intron 25.0%
! CATAGTATGAATGACATTTA+GGG - tig0034523:1921-1940 Msa1453190:intron 25.0%
!!! TTTTTGGTGTTTTATAGTTG+AGG - tig0034523:2214-2233 Msa1453190:CDS 25.0%
! AGAAAGAGTTAATCAATTAC+CGG - tig0034523:2311-2330 Msa1453190:CDS 25.0%
!! TTTTGATCAATCTCATTAAC+CGG + tig0034523:2333-2352 Msa1453190:intergenic 25.0%
!! TTTGAAATTTCTCAATTAGG+GGG - tig0034523:2396-2415 Msa1453190:CDS 25.0%
!! TCATTTTACCCAAGAAAAAA+AGG - tig0034523:2733-2752 Msa1453190:CDS 25.0%
!!! ACAAAGATCCTTTTTTTCTT+GGG + tig0034523:2744-2763 Msa1453190:intergenic 25.0%
!!! TACAAAGATCCTTTTTTTCT+TGG + tig0034523:2745-2764 Msa1453190:intergenic 25.0%
TATTAATGTACTTACTTGGG+AGG + tig0034523:1074-1093 Msa1453190:intergenic 30.0%
! GACAAACTTTTACTAGGTTA+TGG - tig0034523:1145-1164 Msa1453190:three_prime_UTR 30.0%
TCCTGGTTATGTTTATTCTT+CGG - tig0034523:1435-1454 Msa1453190:CDS 30.0%
TCTTCGGATAACAAAGTTAT+TGG - tig0034523:1451-1470 Msa1453190:CDS 30.0%
CTTCGGATAACAAAGTTATT+GGG - tig0034523:1452-1471 Msa1453190:CDS 30.0%
TTCGGATAACAAAGTTATTG+GGG - tig0034523:1453-1472 Msa1453190:CDS 30.0%
AAAACCATGGTGTTCTATAA+AGG - tig0034523:1481-1500 Msa1453190:CDS 30.0%
! TTTTCCTTTATAGAACACCA+TGG + tig0034523:1488-1507 Msa1453190:intergenic 30.0%
AATGATGCAATATATACCTG+AGG + tig0034523:1592-1611 Msa1453190:intergenic 30.0%
! CTTTTGATCCAAGTATTTGT+TGG + tig0034523:1816-1835 Msa1453190:intergenic 30.0%
! TATGAATGACATTTAGGGTA+TGG - tig0034523:1926-1945 Msa1453190:intron 30.0%
AAAAGGAAAAAACAGTTGAG+AGG - tig0034523:2006-2025 Msa1453190:intron 30.0%
TTAACTCTTTCTCTCTCTAA+TGG + tig0034523:2303-2322 Msa1453190:intergenic 30.0%
GAGATTGATCAAAATCCATT+TGG - tig0034523:2339-2358 Msa1453190:CDS 30.0%
! CAATGAAAATAATGGTGATG+AGG - tig0034523:2491-2510 Msa1453190:intron 30.0%
TTCAATTCCAAGAATCACTA+TGG - tig0034523:2514-2533 Msa1453190:intron 30.0%
TCAATTCCAAGAATCACTAT+GGG - tig0034523:2515-2534 Msa1453190:intron 30.0%
TATTAATGTACTTACTTGGG+AGG + tig0034523:1074-1093 Msa1453190:intergenic 30.0%
! GACAAACTTTTACTAGGTTA+TGG - tig0034523:1145-1164 Msa1453190:three_prime_UTR 30.0%
TCCTGGTTATGTTTATTCTT+CGG - tig0034523:1435-1454 Msa1453190:CDS 30.0%
TCTTCGGATAACAAAGTTAT+TGG - tig0034523:1451-1470 Msa1453190:CDS 30.0%
CTTCGGATAACAAAGTTATT+GGG - tig0034523:1452-1471 Msa1453190:CDS 30.0%
TTCGGATAACAAAGTTATTG+GGG - tig0034523:1453-1472 Msa1453190:CDS 30.0%
AAAACCATGGTGTTCTATAA+AGG - tig0034523:1481-1500 Msa1453190:CDS 30.0%
! TTTTCCTTTATAGAACACCA+TGG + tig0034523:1488-1507 Msa1453190:intergenic 30.0%
AATGATGCAATATATACCTG+AGG + tig0034523:1592-1611 Msa1453190:intergenic 30.0%
! CTTTTGATCCAAGTATTTGT+TGG + tig0034523:1816-1835 Msa1453190:intergenic 30.0%
! TATGAATGACATTTAGGGTA+TGG - tig0034523:1926-1945 Msa1453190:intron 30.0%
AAAAGGAAAAAACAGTTGAG+AGG - tig0034523:2006-2025 Msa1453190:intron 30.0%
TTAACTCTTTCTCTCTCTAA+TGG + tig0034523:2303-2322 Msa1453190:intergenic 30.0%
GAGATTGATCAAAATCCATT+TGG - tig0034523:2339-2358 Msa1453190:CDS 30.0%
! CAATGAAAATAATGGTGATG+AGG - tig0034523:2491-2510 Msa1453190:intron 30.0%
TTCAATTCCAAGAATCACTA+TGG - tig0034523:2514-2533 Msa1453190:intron 30.0%
TCAATTCCAAGAATCACTAT+GGG - tig0034523:2515-2534 Msa1453190:intron 30.0%
TAACAAGCTCTTCTTCAGTT+GGG + tig0034523:960-979 Msa1453190:intergenic 35.0%
CCAAACAAGTGCTATAGATA+GGG - tig0034523:1008-1027 Msa1453190:three_prime_UTR 35.0%
ATTCCAGTCATTGACATCAA+TGG - tig0034523:1033-1052 Msa1453190:three_prime_UTR 35.0%
! CAATGGTTTTTCTTTTCACC+AGG - tig0034523:1340-1359 Msa1453190:CDS 35.0%
CTAATAGAACTACTGCTTGT+GGG - tig0034523:1392-1411 Msa1453190:CDS 35.0%
TCCGAAGAATAAACATAACC+AGG + tig0034523:1439-1458 Msa1453190:intergenic 35.0%
TATTGGGGTGAAAAAAACCA+TGG - tig0034523:1468-1487 Msa1453190:CDS 35.0%
TATAAAGGAAAAGCTCCAAG+TGG - tig0034523:1496-1515 Msa1453190:intron 35.0%
!!! CATTTTGTTTTCCTTCCACT+TGG + tig0034523:1514-1533 Msa1453190:intergenic 35.0%
CAAGTGGAAGGAAAACAAAA+TGG - tig0034523:1512-1531 Msa1453190:intron 35.0%
!! GGATTGGTTAGATACTTGAA+TGG + tig0034523:1557-1576 Msa1453190:intergenic 35.0%
! GAGGAGTTTTCAAATCAAGT+AGG - tig0034523:2025-2044 Msa1453190:intron 35.0%
TGTCGAGTGTATGTAATATC+AGG - tig0034523:2252-2271 Msa1453190:CDS 35.0%
CTAGTGGCATATGATTACTT+TGG + tig0034523:2425-2444 Msa1453190:intergenic 35.0%
AAGTAATCATATGCCACTAG+AGG - tig0034523:2425-2444 Msa1453190:intron 35.0%
GAGGTTCAAATAGCACAAAT+TGG - tig0034523:2454-2473 Msa1453190:intron 35.0%
!! GGGACAGTGAACATTTTAAT+TGG - tig0034523:2541-2560 Msa1453190:intron 35.0%
TAACAAGCTCTTCTTCAGTT+GGG + tig0034523:960-979 Msa1453190:intergenic 35.0%
CCAAACAAGTGCTATAGATA+GGG - tig0034523:1008-1027 Msa1453190:three_prime_UTR 35.0%
ATTCCAGTCATTGACATCAA+TGG - tig0034523:1033-1052 Msa1453190:three_prime_UTR 35.0%
! CAATGGTTTTTCTTTTCACC+AGG - tig0034523:1340-1359 Msa1453190:CDS 35.0%
CTAATAGAACTACTGCTTGT+GGG - tig0034523:1392-1411 Msa1453190:CDS 35.0%
TCCGAAGAATAAACATAACC+AGG + tig0034523:1439-1458 Msa1453190:intergenic 35.0%
TATTGGGGTGAAAAAAACCA+TGG - tig0034523:1468-1487 Msa1453190:CDS 35.0%
TATAAAGGAAAAGCTCCAAG+TGG - tig0034523:1496-1515 Msa1453190:intron 35.0%
!!! CATTTTGTTTTCCTTCCACT+TGG + tig0034523:1514-1533 Msa1453190:intergenic 35.0%
CAAGTGGAAGGAAAACAAAA+TGG - tig0034523:1512-1531 Msa1453190:intron 35.0%
!! GGATTGGTTAGATACTTGAA+TGG + tig0034523:1557-1576 Msa1453190:intergenic 35.0%
! GAGGAGTTTTCAAATCAAGT+AGG - tig0034523:2025-2044 Msa1453190:intron 35.0%
TGTCGAGTGTATGTAATATC+AGG - tig0034523:2252-2271 Msa1453190:CDS 35.0%
CTAGTGGCATATGATTACTT+TGG + tig0034523:2425-2444 Msa1453190:intergenic 35.0%
AAGTAATCATATGCCACTAG+AGG - tig0034523:2425-2444 Msa1453190:intron 35.0%
GAGGTTCAAATAGCACAAAT+TGG - tig0034523:2454-2473 Msa1453190:intron 35.0%
!! GGGACAGTGAACATTTTAAT+TGG - tig0034523:2541-2560 Msa1453190:intron 35.0%
CTAACAAGCTCTTCTTCAGT+TGG + tig0034523:961-980 Msa1453190:intergenic 40.0%
GCCAAACAAGTGCTATAGAT+AGG - tig0034523:1007-1026 Msa1453190:three_prime_UTR 40.0%
CCCTATCTATAGCACTTGTT+TGG + tig0034523:1011-1030 Msa1453190:intergenic 40.0%
ACACCATTGATGTCAATGAC+TGG + tig0034523:1039-1058 Msa1453190:intergenic 40.0%
ACATCAATGGTGTAGAACCA+TGG - tig0034523:1046-1065 Msa1453190:three_prime_UTR 40.0%
TATGTTCCAAGCAGACAACT+CGG + tig0034523:1237-1256 Msa1453190:intergenic 40.0%
!! ATGTGTTTTTGCAGCTCTTG+CGG - tig0034523:1291-1310 Msa1453190:CDS 40.0%
ACCATTGCTCTTTATCTTCG+CGG + tig0034523:1327-1346 Msa1453190:intergenic 40.0%
! CCACAAGCAGTAGTTCTATT+AGG + tig0034523:1394-1413 Msa1453190:intergenic 40.0%
CCTAATAGAACTACTGCTTG+TGG - tig0034523:1391-1410 Msa1453190:CDS 40.0%
TGCAATATATACCTGAGGTG+TGG + tig0034523:1587-1606 Msa1453190:intergenic 40.0%
TCCAAGAATCACTATGGGAA+TGG - tig0034523:2520-2539 Msa1453190:intron 40.0%
CCAAGAATCACTATGGGAAT+GGG - tig0034523:2521-2540 Msa1453190:intron 40.0%
TCCTAATTAACTCCAGCTCA+TGG - tig0034523:2564-2583 Msa1453190:intron 40.0%
ACCATGAGCTGGAGTTAATT+AGG + tig0034523:2568-2587 Msa1453190:intergenic 40.0%
TAATTAACTCCAGCTCATGG+TGG - tig0034523:2567-2586 Msa1453190:intron 40.0%
AATTAACTCCAGCTCATGGT+GGG - tig0034523:2568-2587 Msa1453190:intron 40.0%
AGTCGTGTTTATACTTGACG+GGG + tig0034523:2608-2627 Msa1453190:intergenic 40.0%
GAGTCGTGTTTATACTTGAC+GGG + tig0034523:2609-2628 Msa1453190:intergenic 40.0%
CGAGTCGTGTTTATACTTGA+CGG + tig0034523:2610-2629 Msa1453190:intergenic 40.0%
CTAACAAGCTCTTCTTCAGT+TGG + tig0034523:961-980 Msa1453190:intergenic 40.0%
GCCAAACAAGTGCTATAGAT+AGG - tig0034523:1007-1026 Msa1453190:three_prime_UTR 40.0%
CCCTATCTATAGCACTTGTT+TGG + tig0034523:1011-1030 Msa1453190:intergenic 40.0%
ACACCATTGATGTCAATGAC+TGG + tig0034523:1039-1058 Msa1453190:intergenic 40.0%
ACATCAATGGTGTAGAACCA+TGG - tig0034523:1046-1065 Msa1453190:three_prime_UTR 40.0%
TATGTTCCAAGCAGACAACT+CGG + tig0034523:1237-1256 Msa1453190:intergenic 40.0%
!! ATGTGTTTTTGCAGCTCTTG+CGG - tig0034523:1291-1310 Msa1453190:CDS 40.0%
ACCATTGCTCTTTATCTTCG+CGG + tig0034523:1327-1346 Msa1453190:intergenic 40.0%
! CCACAAGCAGTAGTTCTATT+AGG + tig0034523:1394-1413 Msa1453190:intergenic 40.0%
CCTAATAGAACTACTGCTTG+TGG - tig0034523:1391-1410 Msa1453190:CDS 40.0%
TGCAATATATACCTGAGGTG+TGG + tig0034523:1587-1606 Msa1453190:intergenic 40.0%
TCCAAGAATCACTATGGGAA+TGG - tig0034523:2520-2539 Msa1453190:intron 40.0%
CCAAGAATCACTATGGGAAT+GGG - tig0034523:2521-2540 Msa1453190:intron 40.0%
TCCTAATTAACTCCAGCTCA+TGG - tig0034523:2564-2583 Msa1453190:intron 40.0%
ACCATGAGCTGGAGTTAATT+AGG + tig0034523:2568-2587 Msa1453190:intergenic 40.0%
TAATTAACTCCAGCTCATGG+TGG - tig0034523:2567-2586 Msa1453190:intron 40.0%
AATTAACTCCAGCTCATGGT+GGG - tig0034523:2568-2587 Msa1453190:intron 40.0%
AGTCGTGTTTATACTTGACG+GGG + tig0034523:2608-2627 Msa1453190:intergenic 40.0%
GAGTCGTGTTTATACTTGAC+GGG + tig0034523:2609-2628 Msa1453190:intergenic 40.0%
CGAGTCGTGTTTATACTTGA+CGG + tig0034523:2610-2629 Msa1453190:intergenic 40.0%
GGAAGAAACGAAAACCAGGT+GGG + tig0034523:939-958 Msa1453190:intergenic 45.0%
GTTGGGAAGAAACGAAAACC+AGG + tig0034523:943-962 Msa1453190:intergenic 45.0%
TACTTACTTGGGAGGTTCCA+TGG + tig0034523:1066-1085 Msa1453190:intergenic 45.0%
!! CAGACAACTCGGTTGATGAA+CGG + tig0034523:1226-1245 Msa1453190:intergenic 45.0%
!! TGTGTTTTTGCAGCTCTTGC+GGG - tig0034523:1292-1311 Msa1453190:CDS 45.0%
AGGTCAAGAGAGAGAAGCAA+GGG - tig0034523:1360-1379 Msa1453190:CDS 45.0%
GAACTACTGCTTGTGGGTAT+TGG - tig0034523:1398-1417 Msa1453190:CDS 45.0%
!! TACTGCTTGTGGGTATTGGA+AGG - tig0034523:1402-1421 Msa1453190:CDS 45.0%
AAGGAAAAGCTCCAAGTGGA+AGG - tig0034523:1500-1519 Msa1453190:intron 45.0%
TGAGTAGATGTGGCACCAAA+TGG + tig0034523:2357-2376 Msa1453190:intergenic 45.0%
TGCATCCTGATGAGTAGATG+TGG + tig0034523:2367-2386 Msa1453190:intergenic 45.0%
CATATGCCACTAGAGGTTGT+AGG - tig0034523:2432-2451 Msa1453190:intron 45.0%
CCCATTCCCATAGTGATTCT+TGG + tig0034523:2524-2543 Msa1453190:intergenic 45.0%
GGAAGAAACGAAAACCAGGT+GGG + tig0034523:939-958 Msa1453190:intergenic 45.0%
GTTGGGAAGAAACGAAAACC+AGG + tig0034523:943-962 Msa1453190:intergenic 45.0%
TACTTACTTGGGAGGTTCCA+TGG + tig0034523:1066-1085 Msa1453190:intergenic 45.0%
!! CAGACAACTCGGTTGATGAA+CGG + tig0034523:1226-1245 Msa1453190:intergenic 45.0%
!! TGTGTTTTTGCAGCTCTTGC+GGG - tig0034523:1292-1311 Msa1453190:CDS 45.0%
AGGTCAAGAGAGAGAAGCAA+GGG - tig0034523:1360-1379 Msa1453190:CDS 45.0%
GAACTACTGCTTGTGGGTAT+TGG - tig0034523:1398-1417 Msa1453190:CDS 45.0%
!! TACTGCTTGTGGGTATTGGA+AGG - tig0034523:1402-1421 Msa1453190:CDS 45.0%
AAGGAAAAGCTCCAAGTGGA+AGG - tig0034523:1500-1519 Msa1453190:intron 45.0%
TGAGTAGATGTGGCACCAAA+TGG + tig0034523:2357-2376 Msa1453190:intergenic 45.0%
TGCATCCTGATGAGTAGATG+TGG + tig0034523:2367-2386 Msa1453190:intergenic 45.0%
CATATGCCACTAGAGGTTGT+AGG - tig0034523:2432-2451 Msa1453190:intron 45.0%
CCCATTCCCATAGTGATTCT+TGG + tig0034523:2524-2543 Msa1453190:intergenic 45.0%
ATGGAAGATACCTTCCCACC+TGG - tig0034523:922-941 Msa1453190:three_prime_UTR 50.0%
GAAACGAAAACCAGGTGGGA+AGG + tig0034523:935-954 Msa1453190:intergenic 50.0%
GGGAAGAAACGAAAACCAGG+TGG + tig0034523:940-959 Msa1453190:intergenic 50.0%
TGAGGTCAGAGTTCGAACTC+TGG + tig0034523:1178-1197 Msa1453190:intergenic 50.0%
GAGTTCGAACTCTGACCTCA+TGG - tig0034523:1178-1197 Msa1453190:CDS 50.0%
CATCAACCGAGTTGTCTGCT+TGG - tig0034523:1228-1247 Msa1453190:CDS 50.0%
GCCGCGAAGATAAAGAGCAA+TGG - tig0034523:1323-1342 Msa1453190:CDS 50.0%
CTTGCTTCTCTCTCTTGACC+TGG + tig0034523:1361-1380 Msa1453190:intergenic 50.0%
CAGGTCAAGAGAGAGAAGCA+AGG - tig0034523:1359-1378 Msa1453190:CDS 50.0%
GGTCAAGAGAGAGAAGCAAG+GGG - tig0034523:1361-1380 Msa1453190:CDS 50.0%
AAGAGAGAGAAGCAAGGGGA+GGG - tig0034523:1365-1384 Msa1453190:CDS 50.0%
!! TGTGGGTATTGGAAGGCAAC+AGG - tig0034523:1409-1428 Msa1453190:CDS 50.0%
!! TGGTGCCACATCTACTCATC+AGG - tig0034523:2359-2378 Msa1453190:CDS 50.0%
ATGCCACTAGAGGTTGTAGG+AGG - tig0034523:2435-2454 Msa1453190:intron 50.0%
GAACCTCCTACAACCTCTAG+TGG + tig0034523:2441-2460 Msa1453190:intergenic 50.0%
TTGAGTATCCCACCATGAGC+TGG + tig0034523:2579-2598 Msa1453190:intergenic 50.0%
ATGGAAGATACCTTCCCACC+TGG - tig0034523:922-941 Msa1453190:three_prime_UTR 50.0%
GAAACGAAAACCAGGTGGGA+AGG + tig0034523:935-954 Msa1453190:intergenic 50.0%
GGGAAGAAACGAAAACCAGG+TGG + tig0034523:940-959 Msa1453190:intergenic 50.0%
TGAGGTCAGAGTTCGAACTC+TGG + tig0034523:1178-1197 Msa1453190:intergenic 50.0%
GAGTTCGAACTCTGACCTCA+TGG - tig0034523:1178-1197 Msa1453190:CDS 50.0%
CATCAACCGAGTTGTCTGCT+TGG - tig0034523:1228-1247 Msa1453190:CDS 50.0%
GCCGCGAAGATAAAGAGCAA+TGG - tig0034523:1323-1342 Msa1453190:CDS 50.0%
CTTGCTTCTCTCTCTTGACC+TGG + tig0034523:1361-1380 Msa1453190:intergenic 50.0%
CAGGTCAAGAGAGAGAAGCA+AGG - tig0034523:1359-1378 Msa1453190:CDS 50.0%
GGTCAAGAGAGAGAAGCAAG+GGG - tig0034523:1361-1380 Msa1453190:CDS 50.0%
AAGAGAGAGAAGCAAGGGGA+GGG - tig0034523:1365-1384 Msa1453190:CDS 50.0%
!! TGTGGGTATTGGAAGGCAAC+AGG - tig0034523:1409-1428 Msa1453190:CDS 50.0%
!! TGGTGCCACATCTACTCATC+AGG - tig0034523:2359-2378 Msa1453190:CDS 50.0%
ATGCCACTAGAGGTTGTAGG+AGG - tig0034523:2435-2454 Msa1453190:intron 50.0%
GAACCTCCTACAACCTCTAG+TGG + tig0034523:2441-2460 Msa1453190:intergenic 50.0%
TTGAGTATCCCACCATGAGC+TGG + tig0034523:2579-2598 Msa1453190:intergenic 50.0%
CAAGAGAGAGAAGCAAGGGG+AGG - tig0034523:1364-1383 Msa1453190:CDS 55.0%
TGGAAGGCAACAGGTTCTCC+TGG - tig0034523:1418-1437 Msa1453190:CDS 55.0%
! GAGGTGTGGCAGTGTTGGAT+TGG + tig0034523:1573-1592 Msa1453190:intergenic 55.0%
ATCCAACACTGCCACACCTC+AGG - tig0034523:1573-1592 Msa1453190:intron 55.0%
TACCTGAGGTGTGGCAGTGT+TGG + tig0034523:1578-1597 Msa1453190:intergenic 55.0%
CAAGAGAGAGAAGCAAGGGG+AGG - tig0034523:1364-1383 Msa1453190:CDS 55.0%
TGGAAGGCAACAGGTTCTCC+TGG - tig0034523:1418-1437 Msa1453190:CDS 55.0%
! GAGGTGTGGCAGTGTTGGAT+TGG + tig0034523:1573-1592 Msa1453190:intergenic 55.0%
ATCCAACACTGCCACACCTC+AGG - tig0034523:1573-1592 Msa1453190:intron 55.0%
TACCTGAGGTGTGGCAGTGT+TGG + tig0034523:1578-1597 Msa1453190:intergenic 55.0%
Chromosome Type Strat End Strand Name
tig0034523 gene 895 2845 895 ID=Msa1453190;Name=Msa1453190
tig0034523 mRNA 895 2845 895 ID=Msa1453190-mRNA-1;Parent=Msa1453190;Name=Msa1453190-mRNA-1;_AED=0.14;_eAED=0.14;_QI=27|1|1|1|1|1|3|276|261
tig0034523 exon 895 1509 895 ID=Msa1453190-mRNA-1:exon:19046;Parent=Msa1453190-mRNA-1
tig0034523 exon 2146 2435 2146 ID=Msa1453190-mRNA-1:exon:19045;Parent=Msa1453190-mRNA-1
tig0034523 exon 2662 2845 2662 ID=Msa1453190-mRNA-1:exon:19044;Parent=Msa1453190-mRNA-1
tig0034523 five_prime_UTR 2819 2845 2819 ID=Msa1453190-mRNA-1:five_prime_utr;Parent=Msa1453190-mRNA-1
tig0034523 CDS 2662 2818 2662 ID=Msa1453190-mRNA-1:cds;Parent=Msa1453190-mRNA-1
tig0034523 CDS 2146 2435 2146 ID=Msa1453190-mRNA-1:cds;Parent=Msa1453190-mRNA-1
tig0034523 CDS 1171 1509 1171 ID=Msa1453190-mRNA-1:cds;Parent=Msa1453190-mRNA-1
tig0034523 three_prime_UTR 895 1170 895 ID=Msa1453190-mRNA-1:three_prime_utr;Parent=Msa1453190-mRNA-1
Gene Sequence

>Msa1453190

ATGGAAGATACCTTCCCACCTGGTTTTCGTTTCTTCCCAACTGAAGAAGAGCTTGTTAGCTTTTATCTAAATAATAAATTACAAGGCCAAACAAGTGCTATAGATAGGGTTATTCCAGTCATTGACATCAATGGTGTAGAACCATGGAACCTCCCAACTCTTGCGGGAGAGCTTTGCCGCGAAGATAAAGAGCAATGGTTTTTCTTTTCACCAGGTCAAGAGAGAGAAGCAAGGGGAGGGAGACCTAATAGAACTACTGCTTGTGGGTATTGGAAGGCAACAGGTTCTCCTGGTTATGTTTATTCTTCGGATAACAAAGTTATTGGGGTGAAAAAAACCATGGTGTTCTATAAAGGAAAAGCTCCAAGTGGAAGGAAAACAAAATGGAAGATGAATGAATACAGAGCCATTCAAGTATCTAACCAATCCAACACTGCCACACCTCAGTTGAGGAGAGAATTCAGCTTGTGTCGAGTGTATGTAATATCAGGAAACTTTCGAGCATTTGATAGACGTCCATTAGAGAGAGAAAGAGTTAATCAATTACCGGTTAATGAGATTGATCAAAATCCATTTGGTGCCACATCTACTCATCAGGATGCAACAAGTTCATTTGAAATTTCTCAATTAGGGGGACTCCAAAGTAATCATATGCCACTAGAGGTTGTAGGAGGTTCAAATAGCACAAATTGGCATGTAAATAGTAACAATGAAAATAATGGTGATGAGGTTCAATTCCAAGAATCACTATGGGAATGGGACAGTGAACATTTTAATTGGTCCTAA
Protein sequence

>Msa1453190

MEDTFPPGFRFFPTEEELVSFYLNNKLQGQTSAIDRVIPVIDINGVEPWNLPTLAGELCREDKEQWFFFSPGQEREARGGRPNRTTACGYWKATGSPGYVYSSDNKVIGVKKTMVFYKGKAPSGRKTKWKMNEYRAIQVSNQSNTATPQLRREFSLCRVYVISGNFRAFDRRPLERERVNQLPVNEIDQNPFGATSTHQDATSSFEISQLGGLQSNHMPLEVVGGSNSTNWHVNSNNENNGDEVQFQESLWEWDSEHFNWS*