AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0601070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0601070 MtrunA17_Chr4g0026141 96.935 261 8 0 1 261 1 261 0.0 527
Msa0601070 MtrunA17_Chr2g0321631 61.303 261 78 7 6 260 5 248 2.52e-106 308
Msa0601070 MtrunA17_Chr7g0266701 46.296 270 113 8 3 260 2 251 7.24e-77 233
Msa0601070 MtrunA17_Chr5g0398971 34.583 240 135 8 6 240 8 230 2.86e-40 142
Msa0601070 MtrunA17_Chr2g0309891 38.350 206 115 6 4 209 5 198 2.01e-39 140
Msa0601070 MtrunA17_Chr5g0417791 44.586 157 80 4 5 160 3 153 3.90e-39 137
Msa0601070 MtrunA17_Chr4g0038751 41.011 178 90 5 7 182 17 181 4.62e-39 137
Msa0601070 MtrunA17_Chr1g0200561 44.375 160 81 4 1 160 15 166 9.67e-39 138
Msa0601070 MtrunA17_Chr6g0453131 38.710 186 102 4 3 182 13 192 4.50e-38 137
Msa0601070 MtrunA17_Chr4g0076731 43.558 163 82 3 2 164 51 203 5.04e-38 138
Msa0601070 MtrunA17_Chr4g0018391 44.937 158 73 6 6 160 8 154 7.09e-38 135
Msa0601070 MtrunA17_Chr2g0326361 46.250 160 75 5 4 159 13 165 7.33e-38 135
Msa0601070 MtrunA17_Chr5g0433781 43.590 156 81 4 4 159 5 153 1.21e-37 139
Msa0601070 MtrunA17_Chr6g0481091 43.125 160 84 4 5 164 6 158 1.85e-37 132
Msa0601070 MtrunA17_Chr4g0042561 43.312 157 82 4 5 160 9 159 2.08e-37 132
Msa0601070 MtrunA17_Chr8g0372121 43.275 171 83 6 1 168 2 161 3.70e-37 133
Msa0601070 MtrunA17_Chr8g0359921 42.767 159 80 5 4 160 13 162 1.00e-36 132
Msa0601070 MtrunA17_Chr5g0405211 43.558 163 78 5 1 160 4 155 1.19e-36 132
Msa0601070 MtrunA17_Chr3g0130731 40.237 169 94 3 2 170 4 165 1.21e-36 131
Msa0601070 MtrunA17_Chr8g0384721 34.842 221 126 7 5 218 7 216 2.87e-36 130
Msa0601070 MtrunA17_Chr3g0109821 35.268 224 120 7 4 227 5 203 3.77e-36 135
Msa0601070 MtrunA17_Chr8g0361731 39.521 167 89 4 1 160 10 171 7.03e-36 131
Msa0601070 MtrunA17_Chr3g0124761 41.916 167 86 4 2 166 4 161 1.10e-35 129
Msa0601070 MtrunA17_Chr2g0309331 37.566 189 102 6 2 187 7 182 2.42e-35 129
Msa0601070 MtrunA17_Chr3g0144271 42.857 161 85 4 2 161 20 174 3.62e-35 130
Msa0601070 MtrunA17_Chr1g0147421 34.389 221 131 5 2 220 24 232 4.47e-35 129
Msa0601070 MtrunA17_Chr7g0263931 40.102 197 103 7 2 191 8 196 5.08e-35 128
Msa0601070 MtrunA17_Chr4g0047841 38.725 204 93 7 5 185 15 209 8.68e-35 127
Msa0601070 MtrunA17_Chr3g0139331 40.237 169 90 4 2 169 8 166 1.23e-34 127
Msa0601070 MtrunA17_Chr6g0453451 40.936 171 92 5 5 174 20 182 2.15e-34 126
Msa0601070 MtrunA17_Chr4g0056541 36.842 190 90 7 6 191 8 171 2.84e-34 126
Msa0601070 MtrunA17_Chr6g0484441 41.875 160 82 6 1 160 1 149 3.00e-34 125
Msa0601070 MtrunA17_Chr7g0252971 39.412 170 85 5 2 160 5 167 3.52e-34 125
Msa0601070 MtrunA17_Chr2g0318081 42.138 159 79 6 4 160 15 162 3.95e-34 126
Msa0601070 MtrunA17_Chr2g0318101 39.791 191 89 8 5 182 15 192 9.68e-34 125
Msa0601070 MtrunA17_Chr2g0316971 46.970 132 64 3 5 135 23 149 1.09e-33 125
Msa0601070 MtrunA17_Chr5g0417001 44.118 136 70 3 1 135 10 140 1.25e-33 125
Msa0601070 MtrunA17_Chr8g0346001 37.634 186 101 6 6 182 16 195 1.99e-33 125
Msa0601070 MtrunA17_Chr5g0400461 43.210 162 77 5 4 159 5 157 3.65e-33 123
Msa0601070 MtrunA17_Chr8g0345671 44.231 156 73 5 6 159 12 155 6.36e-33 124
Msa0601070 MtrunA17_Chr3g0091921 41.875 160 80 5 4 160 15 164 1.39e-32 120
Msa0601070 MtrunA17_Chr2g0311661 35.747 221 115 9 2 209 17 223 1.97e-32 120
Msa0601070 MtrunA17_Chr2g0311651 39.894 188 93 9 2 174 18 200 2.79e-32 120
Msa0601070 MtrunA17_Chr1g0183741 38.750 160 81 5 4 160 9 154 3.04e-32 119
Msa0601070 MtrunA17_Chr8g0345691 39.873 158 83 4 3 159 10 156 5.69e-32 121
Msa0601070 MtrunA17_Chr4g0054791 41.772 158 84 5 4 159 5 156 6.74e-32 119
Msa0601070 MtrunA17_Chr4g0060931 40.881 159 81 5 5 160 17 165 7.35e-32 120
Msa0601070 MtrunA17_Chr5g0428991 42.038 157 82 5 5 160 25 173 1.06e-31 122
Msa0601070 MtrunA17_Chr4g0017921 40.000 165 84 5 6 167 9 161 2.97e-31 118
Msa0601070 MtrunA17_Chr7g0261411 38.750 160 81 5 4 160 9 154 3.15e-31 117
Msa0601070 MtrunA17_Chr7g0217711 41.379 145 79 3 5 149 19 157 3.74e-31 114
Msa0601070 MtrunA17_Chr8g0385991 40.625 160 85 4 5 161 14 166 5.47e-31 114
Msa0601070 MtrunA17_Chr3g0128111 39.869 153 85 4 8 160 45 190 8.77e-31 114
Msa0601070 MtrunA17_Chr3g0128151 40.252 159 86 5 3 160 20 170 1.04e-30 120
Msa0601070 MtrunA17_Chr7g0217721 45.038 131 66 3 5 135 19 143 1.26e-30 117
Msa0601070 MtrunA17_Chr3g0130101 39.241 158 89 5 7 164 9 159 1.42e-30 116
Msa0601070 MtrunA17_Chr3g0092671 40.881 159 87 4 7 165 7 158 1.49e-30 119
Msa0601070 MtrunA17_Chr1g0197361 38.365 159 91 3 7 165 10 161 1.85e-30 119
Msa0601070 MtrunA17_Chr7g0214071 39.873 158 81 5 5 161 15 159 2.97e-30 113
Msa0601070 MtrunA17_Chr2g0312321 39.264 163 83 6 1 160 7 156 3.41e-30 114
Msa0601070 MtrunA17_Chr1g0197351 40.625 160 88 4 4 160 41 196 4.90e-30 117
Msa0601070 MtrunA17_Chr6g0461661 44.361 133 66 4 5 135 18 144 1.42e-29 114
Msa0601070 MtrunA17_Chr8g0345711 40.411 146 82 4 1 145 8 149 2.44e-29 108
Msa0601070 MtrunA17_Chr7g0253011 41.045 134 71 3 5 135 17 145 3.65e-28 110
Msa0601070 MtrunA17_Chr5g0442771 39.205 176 84 8 7 169 20 185 4.21e-28 109
Msa0601070 MtrunA17_Chr3g0131911 40.964 166 77 7 5 160 14 168 1.78e-27 105
Msa0601070 MtrunA17_Chr8g0345721 34.463 177 82 5 1 144 26 201 1.16e-26 103
Msa0601070 MtrunA17_Chr8g0364791 35.714 154 92 4 7 160 8 154 1.75e-26 107
Msa0601070 MtrunA17_Chr1g0201021 44.961 129 65 4 7 134 21 144 3.56e-26 107
Msa0601070 MtrunA17_Chr8g0345731 40.146 137 75 4 3 135 22 155 5.50e-26 100
Msa0601070 MtrunA17_Chr8g0384201 35.443 158 95 5 7 164 8 158 1.28e-24 102
Msa0601070 MtrunA17_Chr8g0345701 38.926 149 69 6 4 136 6 148 2.38e-24 95.9
Msa0601070 MtrunA17_Chr8g0345741 38.843 121 70 3 16 135 2 119 1.37e-23 93.6
Msa0601070 MtrunA17_Chr4g0050701 36.875 160 84 5 5 160 11 157 4.11e-22 90.5
Msa0601070 MtrunA17_Chr2g0321741 44.954 109 55 4 26 134 13 116 1.31e-21 92.4
Msa0601070 MtrunA17_Chr3g0113001 46.154 78 41 1 58 135 13 89 1.91e-17 80.1
Msa0601070 MtrunA17_Chr3g0130321 30.994 171 99 4 1 162 1 161 3.34e-17 77.8
Msa0601070 MtrunA17_Chr3g0113031 45.783 83 43 2 79 160 9 90 4.69e-15 73.2
Msa0601070 MtrunA17_Chr7g0243371 38.372 86 52 1 51 135 5 90 1.86e-14 68.2
Msa0601070 MtrunA17_Chr8g0384351 32.692 156 76 8 5 160 10 136 9.56e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0601070 AT5G22380.1 55.794 233 95 4 1 231 1 227 6.21e-83 248
Msa0601070 AT3G44350.2 50.000 262 109 6 1 261 1 241 2.20e-82 247
Msa0601070 AT3G44350.1 57.764 161 66 1 1 161 1 159 8.98e-65 199
Msa0601070 AT2G17040.1 36.652 221 115 7 2 214 3 206 1.53e-40 141
Msa0601070 AT1G71930.2 41.573 178 86 5 1 178 5 164 3.09e-39 139
Msa0601070 AT1G71930.1 41.573 178 86 5 1 178 5 164 3.09e-39 139
Msa0601070 AT4G17980.1 45.223 157 81 5 4 159 5 157 4.47e-39 137
Msa0601070 AT4G17980.2 45.223 157 81 5 4 159 5 157 7.14e-39 137
Msa0601070 AT1G69490.1 40.588 170 94 4 2 170 6 169 3.73e-38 135
Msa0601070 AT2G02450.1 43.506 154 77 3 7 160 53 196 8.06e-38 137
Msa0601070 AT2G02450.2 43.506 154 77 3 7 160 53 196 9.56e-38 137
Msa0601070 AT1G65910.1 43.312 157 82 4 4 160 5 154 1.81e-37 139
Msa0601070 AT5G66300.1 31.429 280 147 10 4 253 11 275 3.95e-37 133
Msa0601070 AT3G17730.1 41.875 160 86 4 5 164 6 158 1.16e-36 130
Msa0601070 AT1G76420.1 43.030 165 82 5 2 164 19 173 1.37e-36 132
Msa0601070 AT4G36160.1 41.954 174 78 6 4 174 9 162 1.41e-36 133
Msa0601070 AT4G36160.3 41.954 174 78 6 4 174 9 162 1.41e-36 133
Msa0601070 AT4G36160.2 41.954 174 78 6 4 174 13 166 1.51e-36 133
Msa0601070 AT4G27410.2 42.767 159 78 5 4 160 13 160 1.61e-36 131
Msa0601070 AT5G17260.1 42.038 157 85 4 4 160 5 155 2.09e-36 134
Msa0601070 AT5G46590.1 43.226 155 83 4 5 159 6 155 4.76e-36 130
Msa0601070 AT2G18060.3 43.125 160 77 5 4 160 8 156 5.13e-36 131
Msa0601070 AT2G18060.1 43.125 160 77 5 4 160 8 156 5.13e-36 131
Msa0601070 AT1G26870.1 47.794 136 65 3 1 135 12 142 7.89e-36 132
Msa0601070 AT1G01720.1 43.902 164 80 5 5 165 7 161 8.66e-36 129
Msa0601070 AT1G33060.1 43.038 158 83 4 3 160 22 172 1.52e-35 134
Msa0601070 AT1G33060.2 43.038 158 83 4 3 160 22 172 1.68e-35 134
Msa0601070 AT4G35580.1 44.304 158 81 5 3 160 7 157 2.62e-35 132
Msa0601070 AT5G62380.2 40.385 156 85 4 5 160 7 154 2.69e-35 129
Msa0601070 AT5G62380.1 40.385 156 85 4 5 160 7 154 2.69e-35 129
Msa0601070 AT4G35580.3 44.304 158 81 5 3 160 7 157 2.85e-35 132
Msa0601070 AT4G35580.2 44.304 158 81 5 3 160 7 157 2.91e-35 132
Msa0601070 AT3G15500.1 42.767 159 78 5 4 160 13 160 3.60e-35 128
Msa0601070 AT1G12260.2 43.671 158 75 6 6 160 8 154 4.35e-35 129
Msa0601070 AT2G24430.2 41.875 160 83 5 2 160 13 163 4.99e-35 128
Msa0601070 AT2G24430.1 41.875 160 83 5 2 160 13 163 4.99e-35 128
Msa0601070 AT4G27410.3 40.588 170 83 6 4 160 13 177 5.72e-35 127
Msa0601070 AT1G12260.1 43.671 158 75 6 6 160 8 154 7.90e-35 129
Msa0601070 AT1G61110.1 40.642 187 91 6 5 179 16 194 7.98e-35 127
Msa0601070 AT5G24590.2 36.923 195 106 5 4 187 12 200 8.72e-35 130
Msa0601070 AT1G79580.3 40.828 169 86 4 4 169 16 173 1.00e-34 128
Msa0601070 AT1G79580.5 40.828 169 86 4 4 169 16 173 1.00e-34 128
Msa0601070 AT1G79580.4 40.828 169 86 4 4 169 16 173 1.00e-34 128
Msa0601070 AT1G79580.2 40.828 169 86 4 4 169 16 173 1.00e-34 128
Msa0601070 AT1G79580.1 40.828 169 86 4 4 169 16 173 1.00e-34 128
Msa0601070 AT3G03200.1 37.681 207 111 7 4 208 5 195 1.18e-34 130
Msa0601070 AT5G39820.1 41.892 148 80 3 2 148 17 159 1.25e-34 127
Msa0601070 AT1G52890.1 42.138 159 79 5 4 160 13 160 1.46e-34 127
Msa0601070 AT1G62700.1 42.405 158 77 6 6 160 8 154 1.86e-34 128
Msa0601070 AT1G62700.2 42.405 158 77 6 6 160 8 154 1.86e-34 128
Msa0601070 AT5G08790.1 39.785 186 98 6 2 181 4 181 9.28e-34 124
Msa0601070 AT1G77450.1 41.772 158 81 4 5 160 10 158 9.42e-34 123
Msa0601070 AT3G18400.1 40.000 160 86 4 1 160 1 150 9.78e-34 124
Msa0601070 AT5G61430.1 41.509 159 80 5 5 160 16 164 2.09e-33 124
Msa0601070 AT3G10480.1 40.764 157 87 4 4 160 26 176 2.10e-33 126
Msa0601070 AT3G61910.1 44.776 134 65 4 5 135 11 138 2.24e-33 124
Msa0601070 AT5G46590.2 46.565 131 67 3 5 135 6 133 3.32e-33 122
Msa0601070 AT1G54330.1 40.764 157 83 4 4 160 5 151 3.36e-33 122
Msa0601070 AT1G56010.2 39.375 160 92 3 1 160 15 169 5.14e-33 123
Msa0601070 AT3G10480.2 40.764 157 86 4 4 160 26 175 5.82e-33 125
Msa0601070 AT2G46770.1 45.522 134 64 4 5 135 16 143 7.34e-33 123
Msa0601070 AT3G10490.1 40.764 157 87 4 4 160 26 176 7.44e-33 120
Msa0601070 AT3G15170.1 40.244 164 91 4 2 164 17 174 8.98e-33 122
Msa0601070 AT3G04070.2 41.071 168 80 7 4 160 9 168 1.32e-32 122
Msa0601070 AT5G63790.1 39.412 170 94 4 2 169 47 209 2.12e-32 121
Msa0601070 AT5G63790.2 39.412 170 94 4 2 169 57 219 3.18e-32 120
Msa0601070 AT1G32510.1 39.130 161 87 5 5 159 6 161 4.00e-32 119
Msa0601070 AT3G49530.2 38.608 158 91 4 3 160 11 162 5.09e-32 122
Msa0601070 AT4G10350.1 38.333 180 97 6 6 181 10 179 5.09e-32 120
Msa0601070 AT1G32770.1 45.865 133 63 4 6 135 17 143 7.39e-32 120
Msa0601070 AT5G39610.1 40.881 159 81 5 5 160 20 168 1.20e-31 118
Msa0601070 AT3G10500.1 40.123 162 90 4 4 165 8 162 1.26e-31 122
Msa0601070 AT3G49530.1 38.608 158 91 4 3 160 11 162 1.37e-31 121
Msa0601070 AT3G29035.1 42.500 160 77 6 5 160 24 172 1.57e-31 119
Msa0601070 AT3G12910.1 41.624 197 94 9 7 190 23 211 1.85e-31 118
Msa0601070 AT5G07680.1 39.623 159 83 5 5 160 17 165 2.35e-31 118
Msa0601070 AT3G04070.1 43.478 138 65 4 4 135 9 139 2.55e-31 119
Msa0601070 AT5G07680.2 39.623 159 83 5 5 160 3 151 2.77e-31 118
Msa0601070 AT5G53950.1 47.368 133 62 4 5 135 17 143 3.66e-31 119
Msa0601070 AT3G10490.2 40.127 157 88 4 4 160 26 176 3.72e-31 120
Msa0601070 AT3G15510.1 40.571 175 82 7 9 170 21 186 4.95e-31 118
Msa0601070 AT1G33280.1 38.650 163 91 4 6 168 9 162 6.76e-31 117
Msa0601070 AT5G18270.2 37.158 183 103 6 5 182 21 196 1.82e-30 116
Msa0601070 AT3G12977.1 38.889 162 87 6 1 160 14 165 2.29e-30 115
Msa0601070 AT5G18270.1 37.158 183 103 6 5 182 21 196 3.64e-30 115
Msa0601070 AT3G04060.1 38.889 162 81 5 5 160 20 169 3.96e-30 115
Msa0601070 AT5G13180.1 41.772 158 79 5 5 161 14 159 5.96e-30 113
Msa0601070 AT5G04410.1 38.889 162 92 5 4 165 8 162 1.37e-29 117
Msa0601070 AT3G44290.2 41.781 146 79 5 7 152 16 155 3.27e-29 110
Msa0601070 AT1G34180.3 37.736 159 92 4 7 165 18 169 6.55e-29 114
Msa0601070 AT2G33480.1 40.764 157 81 5 5 161 15 159 6.91e-29 110
Msa0601070 AT5G04395.1 41.379 145 71 5 2 134 25 167 7.45e-29 108
Msa0601070 AT5G22290.1 40.940 149 83 4 4 152 20 163 8.50e-29 112
Msa0601070 AT2G33480.2 39.490 157 81 4 5 161 15 157 9.46e-29 110
Msa0601070 AT2G43000.1 36.723 177 102 5 7 182 20 187 1.45e-28 110
Msa0601070 AT1G34180.1 43.750 128 68 3 7 134 18 141 1.72e-28 114
Msa0601070 AT3G10480.3 35.450 189 85 5 4 160 26 209 1.74e-28 113
Msa0601070 AT4G01550.1 38.312 154 83 3 8 159 7 150 1.85e-28 112
Msa0601070 AT3G44290.1 41.781 146 79 5 7 152 16 155 2.39e-28 110
Msa0601070 AT4G28530.1 35.754 179 74 6 5 160 10 170 7.89e-28 109
Msa0601070 AT2G27300.1 39.726 146 82 4 7 152 16 155 1.41e-27 108
Msa0601070 AT1G34190.1 42.969 128 69 3 7 134 18 141 1.59e-27 111
Msa0601070 AT5G09330.5 43.411 129 69 3 7 135 8 132 5.22e-27 109
Msa0601070 AT5G09330.2 43.411 129 69 3 7 135 8 132 5.22e-27 109
Msa0601070 AT5G09330.4 43.411 129 69 3 7 135 8 132 5.22e-27 109
Msa0601070 AT5G09330.3 43.411 129 69 3 7 135 8 132 5.22e-27 109
Msa0601070 AT5G09330.1 43.411 129 69 3 7 135 8 132 5.22e-27 109
Msa0601070 AT1G34180.4 34.911 169 95 4 7 165 18 181 2.68e-26 107
Msa0601070 AT5G64060.1 38.037 163 84 7 7 164 8 158 6.08e-26 104
Msa0601070 AT1G34180.2 39.855 138 71 3 7 134 18 153 6.23e-26 106
Msa0601070 AT4G01520.1 37.580 157 85 5 6 159 5 151 1.00e-25 103
Msa0601070 AT4G01540.4 38.065 155 83 5 8 159 7 151 1.24e-24 101
Msa0601070 AT3G04420.2 36.129 155 87 4 6 159 4 147 1.44e-24 99.8
Msa0601070 AT4G01540.2 38.065 155 83 5 8 159 7 151 2.31e-24 101
Msa0601070 AT4G01540.3 38.065 155 83 5 8 159 7 151 2.66e-24 100
Msa0601070 AT4G01540.1 38.065 155 83 5 8 159 7 151 3.88e-24 100
Msa0601070 AT3G04420.1 36.129 155 87 4 6 159 4 147 3.91e-24 99.8
Msa0601070 AT1G52880.1 38.889 162 82 5 9 160 21 175 7.02e-24 98.6
Msa0601070 AT1G32870.2 36.646 161 95 5 5 165 10 163 1.03e-22 97.4
Msa0601070 AT1G32870.1 36.646 161 95 5 5 165 10 163 1.05e-22 97.1
Msa0601070 AT1G32870.3 36.646 161 95 5 5 165 46 199 1.67e-22 96.7
Msa0601070 AT1G02250.1 35.032 157 87 5 6 159 4 148 2.90e-22 94.7
Msa0601070 AT1G02230.1 35.669 157 86 5 6 159 4 148 1.04e-21 93.2
Msa0601070 AT1G56010.1 41.237 97 56 1 64 160 7 102 3.10e-19 84.7
Msa0601070 AT3G12977.2 40.000 105 58 3 57 160 12 112 8.45e-19 82.8
Msa0601070 AT5G64530.1 40.152 132 59 7 5 134 3 116 1.17e-18 81.6
Msa0601070 AT5G64530.2 39.695 131 61 7 5 134 3 116 1.19e-18 80.9
Msa0601070 AT5G61430.2 38.679 106 57 3 58 160 1 101 6.18e-18 81.6
Msa0601070 AT1G02220.1 26.054 261 155 11 6 255 4 237 8.00e-18 82.4
Msa0601070 AT1G01010.1 32.335 167 91 6 1 159 1 153 9.41e-18 82.4
Msa0601070 AT4G10350.2 36.667 120 70 3 63 181 18 132 4.89e-17 79.3
Msa0601070 AT4G28530.2 38.739 111 39 3 5 95 10 111 3.75e-16 77.0
Msa0601070 AT2G33480.3 41.237 97 53 3 65 161 10 102 1.05e-15 74.3
Msa0601070 AT3G04430.1 36.364 110 66 2 11 120 6 111 1.84e-14 70.5
Msa0601070 AT5G50820.1 31.056 161 95 5 5 162 17 164 9.51e-14 68.6
Msa0601070 AT3G56530.1 29.560 159 102 7 4 161 51 200 1.85e-13 69.3
Msa0601070 AT2G43000.2 38.835 103 58 3 81 182 11 109 1.43e-12 65.1
Msa0601070 AT3G10490.4 41.026 78 43 2 83 160 2 76 1.74e-12 67.0
Msa0601070 AT3G10490.3 41.026 78 43 2 83 160 2 76 1.74e-12 67.0
Msa0601070 AT2G18060.2 42.466 73 36 2 88 160 2 68 5.11e-12 64.7
Msa0601070 AT5G14000.2 31.061 132 81 5 5 134 15 138 2.28e-11 60.8
Msa0601070 AT5G14000.1 28.221 163 101 5 5 165 15 163 4.65e-11 61.2

Find 84 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATTTGAAATTTCTCAATT+AGG 0.161327 4_2:-43391104 Msa0601070:CDS
TCTTCGGATAACAAAGTTAT+TGG 0.171109 4_2:-43392046 Msa0601070:CDS
CATTTGAAATTTCTCAATTA+GGG 0.213508 4_2:-43391103 Msa0601070:CDS
CCCATTCCCATAGTGATTCT+TGG 0.233146 4_2:+43390976 None:intergenic
CTTCGGATAACAAAGTTATT+GGG 0.268350 4_2:-43392045 Msa0601070:CDS
ACCATGAGCTGGAGTTAATT+AGG 0.306112 4_2:+43390932 None:intergenic
GAGAAAGAGTTGATCAATTA+CGG 0.316679 4_2:-43391187 Msa0601070:CDS
TTCAATTCCAAGAATCACTA+TGG 0.318489 4_2:-43390983 Msa0601070:CDS
AAAACCATGGTGTTCTATAA+AGG 0.328853 4_2:-43392016 Msa0601070:CDS
TCAACTCTTTCTCTCTCTAA+TGG 0.337247 4_2:+43391197 None:intergenic
TCCTGGTTATGTTTATTCTT+CGG 0.357166 4_2:-43392062 Msa0601070:CDS
AATAGTAACAATGAAAATAA+TGG 0.367657 4_2:-43391014 Msa0601070:CDS
GAACTACTGCTTGTGGGTAT+TGG 0.373733 4_2:-43392099 Msa0601070:CDS
GTGTCGAGTGTATGTAATAT+CGG 0.375874 4_2:-43391246 Msa0601070:CDS
CCACAAGCAGTAGTTCTATT+AGG 0.380796 4_2:+43392106 None:intergenic
CAAGTGGAAGGAAAACAAAA+TGG 0.388513 4_2:-43391985 Msa0601070:CDS
GCCAAACAAGTGCTATAGAT+AGG 0.402516 4_2:-43392490 Msa0601070:CDS
GTAGAATTCAATTAATTCAA+TGG 0.406518 4_2:-43392594 Msa0601070:exon
ACCATTGCTCTTTATCTTCG+CGG 0.411304 4_2:+43392173 None:intergenic
CCCTATCTATAGCACTTGTT+TGG 0.413662 4_2:+43392489 None:intergenic
CTTGCTTCTCTCTCTTGACC+TGG 0.421832 4_2:+43392139 None:intergenic
GAGATTGATCAAAATCCATT+TGG 0.424069 4_2:-43391158 Msa0601070:CDS
TCATCATATTTGTTTAGAAT+AGG 0.449047 4_2:-43390798 Msa0601070:three_prime_UTR
AGAAAGAGTTGATCAATTAC+GGG 0.452891 4_2:-43391186 Msa0601070:CDS
TGTGGGTATTGGAAGGCAAC+AGG 0.456765 4_2:-43392088 Msa0601070:CDS
ATTCCAGTCATTGACATCAA+TGG 0.463355 4_2:-43392464 Msa0601070:CDS
TATCTAAATAATAAATTACA+AGG 0.468522 4_2:-43392512 Msa0601070:CDS
CTAGTGGCATATGATTACTT+TGG 0.471161 4_2:+43391075 None:intergenic
TGGTGCCACATCTACTCATC+AGG 0.471854 4_2:-43391138 Msa0601070:CDS
TACTTACTTGGGAGGTTCCA+TGG 0.472632 4_2:+43392434 None:intergenic
TCCAAGAATCACTATGGGAA+TGG 0.475257 4_2:-43390977 Msa0601070:CDS
GAGTCGTGTTTATACTTGAC+GGG 0.475871 4_2:+43390891 None:intergenic
GAGGTTCAAATAGCACAAAT+TGG 0.477207 4_2:-43391043 Msa0601070:CDS
CCAAGAATCACTATGGGAAT+GGG 0.486561 4_2:-43390976 Msa0601070:CDS
CTAACAAGCTCTTCTTCAGT+TGG 0.487944 4_2:+43392539 None:intergenic
TAACAAGCTCTTCTTCAGTT+GGG 0.488303 4_2:+43392540 None:intergenic
TGGAAGGCAACAGGTTCTCC+TGG 0.494297 4_2:-43392079 Msa0601070:CDS
CTAATAGAACTACTGCTTGT+GGG 0.501976 4_2:-43392105 Msa0601070:CDS
TTGTTAGTTGAGTTAGAACT+TGG 0.507673 4_2:+43390663 None:intergenic
TGAGTAGATGTGGCACCAAA+TGG 0.509329 4_2:+43391143 None:intergenic
TTGAGGATCCCACCATGAGC+TGG 0.514914 4_2:+43390921 None:intergenic
CATATGCCACTAGAGGTTGT+AGG 0.515500 4_2:-43391065 Msa0601070:CDS
AGGTCAAGAGAGAGAAGCAA+GGG 0.520943 4_2:-43392137 Msa0601070:CDS
GAGGTGTGGCAGTGTTGGAT+TGG 0.521829 4_2:+43391927 None:intergenic
TGTCGAGTGTATGTAATATC+GGG 0.527035 4_2:-43391245 Msa0601070:CDS
GGATTGGTTAGATACTTGAA+TGG 0.527741 4_2:+43391943 None:intergenic
CCAAACAAGTGCTATAGATA+GGG 0.540158 4_2:-43392489 Msa0601070:CDS
AAGAGAGAGAAGCAAGGGGA+GGG 0.540485 4_2:-43392132 Msa0601070:CDS
TATTAATGTACTTACTTGGG+AGG 0.544087 4_2:+43392426 None:intergenic
TGATGTTTAAATTTATTGTG+AGG 0.545151 4_2:+43390718 None:intergenic
TACCTGAGGTGTGGCAGTGT+TGG 0.546731 4_2:+43391922 None:intergenic
CGAGTCGTGTTTATACTTGA+CGG 0.546832 4_2:+43390890 None:intergenic
ACACCATTGATGTCAATGAC+TGG 0.555788 4_2:+43392461 None:intergenic
ACTTGACGGGGTCTTACTTG+AGG 0.559202 4_2:+43390904 None:intergenic
ATCCAACACTGCCACACCTC+AGG 0.560321 4_2:-43391924 Msa0601070:intron
TTTGAAATTTCTCAATTAGG+GGG 0.567316 4_2:-43391101 Msa0601070:CDS
TTCGGATAACAAAGTTATTG+GGG 0.568678 4_2:-43392044 Msa0601070:CDS
CAATGAAAATAATGGTGATG+AGG 0.574582 4_2:-43391006 Msa0601070:CDS
CAAGAGAGAGAAGCAAGGGG+AGG 0.575212 4_2:-43392133 Msa0601070:CDS
AAGGAAAAGCTCCAAGTGGA+AGG 0.577529 4_2:-43391997 Msa0601070:CDS
CCTAATAGAACTACTGCTTG+TGG 0.583756 4_2:-43392106 Msa0601070:CDS
TCCTAATTAACTCCAGCTCA+TGG 0.586586 4_2:-43390933 Msa0601070:exon
ATGGAAGATACCTTCCCACC+TGG 0.589454 4_2:-43392575 Msa0601070:CDS
ATTTGAAATTTCTCAATTAG+GGG 0.591470 4_2:-43391102 Msa0601070:CDS
TCCGAAGAATAAACATAACC+AGG 0.594367 4_2:+43392061 None:intergenic
TACTGCTTGTGGGTATTGGA+AGG 0.594408 4_2:-43392095 Msa0601070:CDS
TCAATTCCAAGAATCACTAT+GGG 0.601158 4_2:-43390982 Msa0601070:CDS
GAAACGAAAACCAGGTGGGA+AGG 0.608858 4_2:+43392565 None:intergenic
GCCGCGAAGATAAAGAGCAA+TGG 0.609204 4_2:-43392174 Msa0601070:CDS
AATTAACTCCAGCTCATGGT+GGG 0.619610 4_2:-43390929 Msa0601070:three_prime_UTR
CAGGTCAAGAGAGAGAAGCA+AGG 0.633366 4_2:-43392138 Msa0601070:CDS
AAGTAATCATATGCCACTAG+AGG 0.633670 4_2:-43391072 Msa0601070:CDS
GAACCTCCTACAACCTCTAG+TGG 0.635358 4_2:+43391059 None:intergenic
ACATCAATGGTGTAGAACCA+TGG 0.640791 4_2:-43392451 Msa0601070:CDS
GTTGGGAAGAAACGAAAACC+AGG 0.640908 4_2:+43392557 None:intergenic
TAATTAACTCCAGCTCATGG+TGG 0.645643 4_2:-43390930 Msa0601070:three_prime_UTR
TATAAAGGAAAAGCTCCAAG+TGG 0.670306 4_2:-43392001 Msa0601070:CDS
ATGCCACTAGAGGTTGTAGG+AGG 0.675101 4_2:-43391062 Msa0601070:CDS
TGCATCCTGATGAGTAGATG+TGG 0.677636 4_2:+43391133 None:intergenic
GGTCAAGAGAGAGAAGCAAG+GGG 0.681277 4_2:-43392136 Msa0601070:CDS
AGTCGTGTTTATACTTGACG+GGG 0.694889 4_2:+43390892 None:intergenic
GGGAAGAAACGAAAACCAGG+TGG 0.697514 4_2:+43392560 None:intergenic
GGAAGAAACGAAAACCAGGT+GGG 0.702147 4_2:+43392561 None:intergenic
TGCAATATATACCTGAGGTG+TGG 0.718087 4_2:+43391913 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATCTAAATAATAAATTACA+AGG - chr4_2:43390764-43390783 Msa0601070:three_prime_UTR 10.0%
!!! TATACTATTGTTTTATTTAT+AGG + chr4_2:43391561-43391580 None:intergenic 10.0%
!!! AAATCTTATTTAATCAATTA+TGG + chr4_2:43391678-43391697 None:intergenic 10.0%
!!! AAAATTTTCAAAAACAAAAA+AGG - chr4_2:43391768-43391787 Msa0601070:intron 10.0%
!! TATCTAAATAATAAATTACA+AGG - chr4_2:43390764-43390783 Msa0601070:three_prime_UTR 10.0%
!!! TATACTATTGTTTTATTTAT+AGG + chr4_2:43391561-43391580 None:intergenic 10.0%
!!! AAATCTTATTTAATCAATTA+TGG + chr4_2:43391678-43391697 None:intergenic 10.0%
!!! AAAATTTTCAAAAACAAAAA+AGG - chr4_2:43391768-43391787 Msa0601070:intron 10.0%
!! TTATATTAATGTACTTACTT+GGG + chr4_2:43390856-43390875 None:intergenic 15.0%
!! TTTATATTAATGTACTTACT+TGG + chr4_2:43390857-43390876 None:intergenic 15.0%
!! TAATAATTAAGGTATACAAT+AGG - chr4_2:43391411-43391430 Msa0601070:intron 15.0%
!! AAACTGAAAATTAACATATA+TGG - chr4_2:43391501-43391520 Msa0601070:intron 15.0%
!!! AACTTTTAACTTATGTTTTT+TGG - chr4_2:43391977-43391996 Msa0601070:CDS 15.0%
!! AATAGTAACAATGAAAATAA+TGG - chr4_2:43392262-43392281 Msa0601070:intron 15.0%
!! TTATATTAATGTACTTACTT+GGG + chr4_2:43390856-43390875 None:intergenic 15.0%
!! TTTATATTAATGTACTTACT+TGG + chr4_2:43390857-43390876 None:intergenic 15.0%
!! TAATAATTAAGGTATACAAT+AGG - chr4_2:43391411-43391430 Msa0601070:intron 15.0%
!! AAACTGAAAATTAACATATA+TGG - chr4_2:43391501-43391520 Msa0601070:intron 15.0%
!!! AACTTTTAACTTATGTTTTT+TGG - chr4_2:43391977-43391996 Msa0601070:CDS 15.0%
!! AATAGTAACAATGAAAATAA+TGG - chr4_2:43392262-43392281 Msa0601070:intron 15.0%
!! GTAGAATTCAATTAATTCAA+TGG - chr4_2:43390682-43390701 Msa0601070:three_prime_UTR 20.0%
!! TTGTCTATAAAAGAAAGAAA+TGG + chr4_2:43390909-43390928 None:intergenic 20.0%
!!! TTTATAGACAAACTTTTACT+AGG - chr4_2:43390918-43390937 Msa0601070:three_prime_UTR 20.0%
!!! TAAAAAAAGTATTAACCATG+AGG + chr4_2:43390975-43390994 None:intergenic 20.0%
!! AATCATCAAACTATGTAAAT+CGG + chr4_2:43391042-43391061 None:intergenic 20.0%
!!! CTTGTATGAATTTCATTTTA+AGG + chr4_2:43391529-43391548 None:intergenic 20.0%
!!! TCATTTGAAATTTCTCAATT+AGG - chr4_2:43392172-43392191 Msa0601070:CDS 20.0%
!!! CATTTGAAATTTCTCAATTA+GGG - chr4_2:43392173-43392192 Msa0601070:CDS 20.0%
!!! ATTTGAAATTTCTCAATTAG+GGG - chr4_2:43392174-43392193 Msa0601070:CDS 20.0%
!!! TCATCATATTTGTTTAGAAT+AGG - chr4_2:43392478-43392497 Msa0601070:CDS 20.0%
!! TGATGTTTAAATTTATTGTG+AGG + chr4_2:43392561-43392580 None:intergenic 20.0%
!! GTAGAATTCAATTAATTCAA+TGG - chr4_2:43390682-43390701 Msa0601070:three_prime_UTR 20.0%
!! TTGTCTATAAAAGAAAGAAA+TGG + chr4_2:43390909-43390928 None:intergenic 20.0%
!!! TTTATAGACAAACTTTTACT+AGG - chr4_2:43390918-43390937 Msa0601070:three_prime_UTR 20.0%
!!! TAAAAAAAGTATTAACCATG+AGG + chr4_2:43390975-43390994 None:intergenic 20.0%
!! AATCATCAAACTATGTAAAT+CGG + chr4_2:43391042-43391061 None:intergenic 20.0%
!!! CTTGTATGAATTTCATTTTA+AGG + chr4_2:43391529-43391548 None:intergenic 20.0%
!!! TCATTTGAAATTTCTCAATT+AGG - chr4_2:43392172-43392191 Msa0601070:CDS 20.0%
!!! CATTTGAAATTTCTCAATTA+GGG - chr4_2:43392173-43392192 Msa0601070:CDS 20.0%
!!! ATTTGAAATTTCTCAATTAG+GGG - chr4_2:43392174-43392193 Msa0601070:CDS 20.0%
!!! TCATCATATTTGTTTAGAAT+AGG - chr4_2:43392478-43392497 Msa0601070:CDS 20.0%
!! TGATGTTTAAATTTATTGTG+AGG + chr4_2:43392561-43392580 None:intergenic 20.0%
! TCGTCATGATGTAATAATTA+AGG - chr4_2:43391400-43391419 Msa0601070:intron 25.0%
!! TTTTATGACCAACAAATACT+TGG - chr4_2:43391584-43391603 Msa0601070:intron 25.0%
! ACATAGTATGAATGACATTT+AGG - chr4_2:43391699-43391718 Msa0601070:intron 25.0%
! CATAGTATGAATGACATTTA+GGG - chr4_2:43391700-43391719 Msa0601070:intron 25.0%
!!! TTTGTTGTTATCTAGCTTAA+AGG + chr4_2:43391895-43391914 None:intergenic 25.0%
!!! TTTTTGGTGTTTTATAGTTG+AGG - chr4_2:43391993-43392012 Msa0601070:CDS 25.0%
!! TTTGAAATTTCTCAATTAGG+GGG - chr4_2:43392175-43392194 Msa0601070:CDS 25.0%
!! TCATTTTACCCAAGAAAATA+AGG - chr4_2:43392512-43392531 Msa0601070:CDS 25.0%
!!! ACAAAGATCCTTATTTTCTT+GGG + chr4_2:43392523-43392542 None:intergenic 25.0%
!!! TACAAAGATCCTTATTTTCT+TGG + chr4_2:43392524-43392543 None:intergenic 25.0%
! TCGTCATGATGTAATAATTA+AGG - chr4_2:43391400-43391419 Msa0601070:intron 25.0%
!! TTTTATGACCAACAAATACT+TGG - chr4_2:43391584-43391603 Msa0601070:intron 25.0%
! ACATAGTATGAATGACATTT+AGG - chr4_2:43391699-43391718 Msa0601070:intron 25.0%
! CATAGTATGAATGACATTTA+GGG - chr4_2:43391700-43391719 Msa0601070:intron 25.0%
!!! TTTGTTGTTATCTAGCTTAA+AGG + chr4_2:43391895-43391914 None:intergenic 25.0%
!!! TTTTTGGTGTTTTATAGTTG+AGG - chr4_2:43391993-43392012 Msa0601070:CDS 25.0%
!! TTTGAAATTTCTCAATTAGG+GGG - chr4_2:43392175-43392194 Msa0601070:CDS 25.0%
!! TCATTTTACCCAAGAAAATA+AGG - chr4_2:43392512-43392531 Msa0601070:CDS 25.0%
!!! ACAAAGATCCTTATTTTCTT+GGG + chr4_2:43392523-43392542 None:intergenic 25.0%
!!! TACAAAGATCCTTATTTTCT+TGG + chr4_2:43392524-43392543 None:intergenic 25.0%
TATTAATGTACTTACTTGGG+AGG + chr4_2:43390853-43390872 None:intergenic 30.0%
! GACAAACTTTTACTAGGTTA+TGG - chr4_2:43390924-43390943 Msa0601070:three_prime_UTR 30.0%
TCCTGGTTATGTTTATTCTT+CGG - chr4_2:43391214-43391233 Msa0601070:CDS 30.0%
TCTTCGGATAACAAAGTTAT+TGG - chr4_2:43391230-43391249 Msa0601070:CDS 30.0%
CTTCGGATAACAAAGTTATT+GGG - chr4_2:43391231-43391250 Msa0601070:CDS 30.0%
TTCGGATAACAAAGTTATTG+GGG - chr4_2:43391232-43391251 Msa0601070:CDS 30.0%
AAAACCATGGTGTTCTATAA+AGG - chr4_2:43391260-43391279 Msa0601070:CDS 30.0%
! TTTTCCTTTATAGAACACCA+TGG + chr4_2:43391267-43391286 None:intergenic 30.0%
AATGATGCAATATATACCTG+AGG + chr4_2:43391371-43391390 None:intergenic 30.0%
! CTTTTGATCCAAGTATTTGT+TGG + chr4_2:43391595-43391614 None:intergenic 30.0%
AAAAGGAAAAAACAGTTGAG+AGG - chr4_2:43391785-43391804 Msa0601070:intron 30.0%
! GAGAAAGAGTTGATCAATTA+CGG - chr4_2:43392089-43392108 Msa0601070:CDS 30.0%
! AGAAAGAGTTGATCAATTAC+GGG - chr4_2:43392090-43392109 Msa0601070:CDS 30.0%
GAGATTGATCAAAATCCATT+TGG - chr4_2:43392118-43392137 Msa0601070:CDS 30.0%
! CAATGAAAATAATGGTGATG+AGG - chr4_2:43392270-43392289 Msa0601070:intron 30.0%
TTCAATTCCAAGAATCACTA+TGG - chr4_2:43392293-43392312 Msa0601070:intron 30.0%
TCAATTCCAAGAATCACTAT+GGG - chr4_2:43392294-43392313 Msa0601070:intron 30.0%
TATTAATGTACTTACTTGGG+AGG + chr4_2:43390853-43390872 None:intergenic 30.0%
! GACAAACTTTTACTAGGTTA+TGG - chr4_2:43390924-43390943 Msa0601070:three_prime_UTR 30.0%
TCCTGGTTATGTTTATTCTT+CGG - chr4_2:43391214-43391233 Msa0601070:CDS 30.0%
TCTTCGGATAACAAAGTTAT+TGG - chr4_2:43391230-43391249 Msa0601070:CDS 30.0%
CTTCGGATAACAAAGTTATT+GGG - chr4_2:43391231-43391250 Msa0601070:CDS 30.0%
TTCGGATAACAAAGTTATTG+GGG - chr4_2:43391232-43391251 Msa0601070:CDS 30.0%
AAAACCATGGTGTTCTATAA+AGG - chr4_2:43391260-43391279 Msa0601070:CDS 30.0%
! TTTTCCTTTATAGAACACCA+TGG + chr4_2:43391267-43391286 None:intergenic 30.0%
AATGATGCAATATATACCTG+AGG + chr4_2:43391371-43391390 None:intergenic 30.0%
! CTTTTGATCCAAGTATTTGT+TGG + chr4_2:43391595-43391614 None:intergenic 30.0%
AAAAGGAAAAAACAGTTGAG+AGG - chr4_2:43391785-43391804 Msa0601070:intron 30.0%
! GAGAAAGAGTTGATCAATTA+CGG - chr4_2:43392089-43392108 Msa0601070:CDS 30.0%
! AGAAAGAGTTGATCAATTAC+GGG - chr4_2:43392090-43392109 Msa0601070:CDS 30.0%
GAGATTGATCAAAATCCATT+TGG - chr4_2:43392118-43392137 Msa0601070:CDS 30.0%
! CAATGAAAATAATGGTGATG+AGG - chr4_2:43392270-43392289 Msa0601070:intron 30.0%
TTCAATTCCAAGAATCACTA+TGG - chr4_2:43392293-43392312 Msa0601070:intron 30.0%
TCAATTCCAAGAATCACTAT+GGG - chr4_2:43392294-43392313 Msa0601070:intron 30.0%
TAACAAGCTCTTCTTCAGTT+GGG + chr4_2:43390739-43390758 None:intergenic 35.0%
CCAAACAAGTGCTATAGATA+GGG - chr4_2:43390787-43390806 Msa0601070:three_prime_UTR 35.0%
ATTCCAGTCATTGACATCAA+TGG - chr4_2:43390812-43390831 Msa0601070:three_prime_UTR 35.0%
! CAATGGTTTTTCTTTTCACC+AGG - chr4_2:43391119-43391138 Msa0601070:CDS 35.0%
CTAATAGAACTACTGCTTGT+GGG - chr4_2:43391171-43391190 Msa0601070:CDS 35.0%
TCCGAAGAATAAACATAACC+AGG + chr4_2:43391218-43391237 None:intergenic 35.0%
TATTGGGGTGAAAAAAACCA+TGG - chr4_2:43391247-43391266 Msa0601070:CDS 35.0%
TATAAAGGAAAAGCTCCAAG+TGG - chr4_2:43391275-43391294 Msa0601070:intron 35.0%
!!! CATTTTGTTTTCCTTCCACT+TGG + chr4_2:43391293-43391312 None:intergenic 35.0%
CAAGTGGAAGGAAAACAAAA+TGG - chr4_2:43391291-43391310 Msa0601070:intron 35.0%
!! GGATTGGTTAGATACTTGAA+TGG + chr4_2:43391336-43391355 None:intergenic 35.0%
! GAGGAGTTTTCAAATCAAGT+AGG - chr4_2:43391804-43391823 Msa0601070:intron 35.0%
GTGTCGAGTGTATGTAATAT+CGG - chr4_2:43392030-43392049 Msa0601070:CDS 35.0%
TGTCGAGTGTATGTAATATC+GGG - chr4_2:43392031-43392050 Msa0601070:CDS 35.0%
TCAACTCTTTCTCTCTCTAA+TGG + chr4_2:43392082-43392101 None:intergenic 35.0%
CTAGTGGCATATGATTACTT+TGG + chr4_2:43392204-43392223 None:intergenic 35.0%
AAGTAATCATATGCCACTAG+AGG - chr4_2:43392204-43392223 Msa0601070:intron 35.0%
GAGGTTCAAATAGCACAAAT+TGG - chr4_2:43392233-43392252 Msa0601070:intron 35.0%
!! GGGACAGTGAACATTTTAAT+TGG - chr4_2:43392320-43392339 Msa0601070:intron 35.0%
TAACAAGCTCTTCTTCAGTT+GGG + chr4_2:43390739-43390758 None:intergenic 35.0%
CCAAACAAGTGCTATAGATA+GGG - chr4_2:43390787-43390806 Msa0601070:three_prime_UTR 35.0%
ATTCCAGTCATTGACATCAA+TGG - chr4_2:43390812-43390831 Msa0601070:three_prime_UTR 35.0%
! CAATGGTTTTTCTTTTCACC+AGG - chr4_2:43391119-43391138 Msa0601070:CDS 35.0%
CTAATAGAACTACTGCTTGT+GGG - chr4_2:43391171-43391190 Msa0601070:CDS 35.0%
TCCGAAGAATAAACATAACC+AGG + chr4_2:43391218-43391237 None:intergenic 35.0%
TATTGGGGTGAAAAAAACCA+TGG - chr4_2:43391247-43391266 Msa0601070:CDS 35.0%
TATAAAGGAAAAGCTCCAAG+TGG - chr4_2:43391275-43391294 Msa0601070:intron 35.0%
!!! CATTTTGTTTTCCTTCCACT+TGG + chr4_2:43391293-43391312 None:intergenic 35.0%
CAAGTGGAAGGAAAACAAAA+TGG - chr4_2:43391291-43391310 Msa0601070:intron 35.0%
!! GGATTGGTTAGATACTTGAA+TGG + chr4_2:43391336-43391355 None:intergenic 35.0%
! GAGGAGTTTTCAAATCAAGT+AGG - chr4_2:43391804-43391823 Msa0601070:intron 35.0%
GTGTCGAGTGTATGTAATAT+CGG - chr4_2:43392030-43392049 Msa0601070:CDS 35.0%
TGTCGAGTGTATGTAATATC+GGG - chr4_2:43392031-43392050 Msa0601070:CDS 35.0%
TCAACTCTTTCTCTCTCTAA+TGG + chr4_2:43392082-43392101 None:intergenic 35.0%
CTAGTGGCATATGATTACTT+TGG + chr4_2:43392204-43392223 None:intergenic 35.0%
AAGTAATCATATGCCACTAG+AGG - chr4_2:43392204-43392223 Msa0601070:intron 35.0%
GAGGTTCAAATAGCACAAAT+TGG - chr4_2:43392233-43392252 Msa0601070:intron 35.0%
!! GGGACAGTGAACATTTTAAT+TGG - chr4_2:43392320-43392339 Msa0601070:intron 35.0%
CTAACAAGCTCTTCTTCAGT+TGG + chr4_2:43390740-43390759 None:intergenic 40.0%
GCCAAACAAGTGCTATAGAT+AGG - chr4_2:43390786-43390805 Msa0601070:three_prime_UTR 40.0%
CCCTATCTATAGCACTTGTT+TGG + chr4_2:43390790-43390809 None:intergenic 40.0%
ACACCATTGATGTCAATGAC+TGG + chr4_2:43390818-43390837 None:intergenic 40.0%
ACATCAATGGTGTAGAACCA+TGG - chr4_2:43390825-43390844 Msa0601070:three_prime_UTR 40.0%
TATGTTCCAAGCAGACAACT+CGG + chr4_2:43391016-43391035 None:intergenic 40.0%
!! ATGTGTTTTTGCAGCTCTTG+CGG - chr4_2:43391070-43391089 Msa0601070:CDS 40.0%
ACCATTGCTCTTTATCTTCG+CGG + chr4_2:43391106-43391125 None:intergenic 40.0%
! CCACAAGCAGTAGTTCTATT+AGG + chr4_2:43391173-43391192 None:intergenic 40.0%
CCTAATAGAACTACTGCTTG+TGG - chr4_2:43391170-43391189 Msa0601070:CDS 40.0%
TGCAATATATACCTGAGGTG+TGG + chr4_2:43391366-43391385 None:intergenic 40.0%
TCCAAGAATCACTATGGGAA+TGG - chr4_2:43392299-43392318 Msa0601070:intron 40.0%
CCAAGAATCACTATGGGAAT+GGG - chr4_2:43392300-43392319 Msa0601070:intron 40.0%
TCCTAATTAACTCCAGCTCA+TGG - chr4_2:43392343-43392362 Msa0601070:intron 40.0%
ACCATGAGCTGGAGTTAATT+AGG + chr4_2:43392347-43392366 None:intergenic 40.0%
TAATTAACTCCAGCTCATGG+TGG - chr4_2:43392346-43392365 Msa0601070:intron 40.0%
AATTAACTCCAGCTCATGGT+GGG - chr4_2:43392347-43392366 Msa0601070:intron 40.0%
AGTCGTGTTTATACTTGACG+GGG + chr4_2:43392387-43392406 None:intergenic 40.0%
GAGTCGTGTTTATACTTGAC+GGG + chr4_2:43392388-43392407 None:intergenic 40.0%
CGAGTCGTGTTTATACTTGA+CGG + chr4_2:43392389-43392408 None:intergenic 40.0%
CTAACAAGCTCTTCTTCAGT+TGG + chr4_2:43390740-43390759 None:intergenic 40.0%
GCCAAACAAGTGCTATAGAT+AGG - chr4_2:43390786-43390805 Msa0601070:three_prime_UTR 40.0%
CCCTATCTATAGCACTTGTT+TGG + chr4_2:43390790-43390809 None:intergenic 40.0%
ACACCATTGATGTCAATGAC+TGG + chr4_2:43390818-43390837 None:intergenic 40.0%
ACATCAATGGTGTAGAACCA+TGG - chr4_2:43390825-43390844 Msa0601070:three_prime_UTR 40.0%
TATGTTCCAAGCAGACAACT+CGG + chr4_2:43391016-43391035 None:intergenic 40.0%
!! ATGTGTTTTTGCAGCTCTTG+CGG - chr4_2:43391070-43391089 Msa0601070:CDS 40.0%
ACCATTGCTCTTTATCTTCG+CGG + chr4_2:43391106-43391125 None:intergenic 40.0%
! CCACAAGCAGTAGTTCTATT+AGG + chr4_2:43391173-43391192 None:intergenic 40.0%
CCTAATAGAACTACTGCTTG+TGG - chr4_2:43391170-43391189 Msa0601070:CDS 40.0%
TGCAATATATACCTGAGGTG+TGG + chr4_2:43391366-43391385 None:intergenic 40.0%
TCCAAGAATCACTATGGGAA+TGG - chr4_2:43392299-43392318 Msa0601070:intron 40.0%
CCAAGAATCACTATGGGAAT+GGG - chr4_2:43392300-43392319 Msa0601070:intron 40.0%
TCCTAATTAACTCCAGCTCA+TGG - chr4_2:43392343-43392362 Msa0601070:intron 40.0%
ACCATGAGCTGGAGTTAATT+AGG + chr4_2:43392347-43392366 None:intergenic 40.0%
TAATTAACTCCAGCTCATGG+TGG - chr4_2:43392346-43392365 Msa0601070:intron 40.0%
AATTAACTCCAGCTCATGGT+GGG - chr4_2:43392347-43392366 Msa0601070:intron 40.0%
AGTCGTGTTTATACTTGACG+GGG + chr4_2:43392387-43392406 None:intergenic 40.0%
GAGTCGTGTTTATACTTGAC+GGG + chr4_2:43392388-43392407 None:intergenic 40.0%
CGAGTCGTGTTTATACTTGA+CGG + chr4_2:43392389-43392408 None:intergenic 40.0%
GGAAGAAACGAAAACCAGGT+GGG + chr4_2:43390718-43390737 None:intergenic 45.0%
GTTGGGAAGAAACGAAAACC+AGG + chr4_2:43390722-43390741 None:intergenic 45.0%
TACTTACTTGGGAGGTTCCA+TGG + chr4_2:43390845-43390864 None:intergenic 45.0%
!! CAGACAACTCGGTTGATGAA+CGG + chr4_2:43391005-43391024 None:intergenic 45.0%
!! TGTGTTTTTGCAGCTCTTGC+GGG - chr4_2:43391071-43391090 Msa0601070:CDS 45.0%
AGGTCAAGAGAGAGAAGCAA+GGG - chr4_2:43391139-43391158 Msa0601070:CDS 45.0%
GAACTACTGCTTGTGGGTAT+TGG - chr4_2:43391177-43391196 Msa0601070:CDS 45.0%
!! TACTGCTTGTGGGTATTGGA+AGG - chr4_2:43391181-43391200 Msa0601070:CDS 45.0%
AAGGAAAAGCTCCAAGTGGA+AGG - chr4_2:43391279-43391298 Msa0601070:intron 45.0%
TGAGTAGATGTGGCACCAAA+TGG + chr4_2:43392136-43392155 None:intergenic 45.0%
TGCATCCTGATGAGTAGATG+TGG + chr4_2:43392146-43392165 None:intergenic 45.0%
CATATGCCACTAGAGGTTGT+AGG - chr4_2:43392211-43392230 Msa0601070:intron 45.0%
CCCATTCCCATAGTGATTCT+TGG + chr4_2:43392303-43392322 None:intergenic 45.0%
GGAAGAAACGAAAACCAGGT+GGG + chr4_2:43390718-43390737 None:intergenic 45.0%
GTTGGGAAGAAACGAAAACC+AGG + chr4_2:43390722-43390741 None:intergenic 45.0%
TACTTACTTGGGAGGTTCCA+TGG + chr4_2:43390845-43390864 None:intergenic 45.0%
!! CAGACAACTCGGTTGATGAA+CGG + chr4_2:43391005-43391024 None:intergenic 45.0%
!! TGTGTTTTTGCAGCTCTTGC+GGG - chr4_2:43391071-43391090 Msa0601070:CDS 45.0%
AGGTCAAGAGAGAGAAGCAA+GGG - chr4_2:43391139-43391158 Msa0601070:CDS 45.0%
GAACTACTGCTTGTGGGTAT+TGG - chr4_2:43391177-43391196 Msa0601070:CDS 45.0%
!! TACTGCTTGTGGGTATTGGA+AGG - chr4_2:43391181-43391200 Msa0601070:CDS 45.0%
AAGGAAAAGCTCCAAGTGGA+AGG - chr4_2:43391279-43391298 Msa0601070:intron 45.0%
TGAGTAGATGTGGCACCAAA+TGG + chr4_2:43392136-43392155 None:intergenic 45.0%
TGCATCCTGATGAGTAGATG+TGG + chr4_2:43392146-43392165 None:intergenic 45.0%
CATATGCCACTAGAGGTTGT+AGG - chr4_2:43392211-43392230 Msa0601070:intron 45.0%
CCCATTCCCATAGTGATTCT+TGG + chr4_2:43392303-43392322 None:intergenic 45.0%
ATGGAAGATACCTTCCCACC+TGG - chr4_2:43390701-43390720 Msa0601070:three_prime_UTR 50.0%
GAAACGAAAACCAGGTGGGA+AGG + chr4_2:43390714-43390733 None:intergenic 50.0%
GGGAAGAAACGAAAACCAGG+TGG + chr4_2:43390719-43390738 None:intergenic 50.0%
TGAGGTCAGAGTTCGAACTC+TGG + chr4_2:43390957-43390976 None:intergenic 50.0%
GAGTTCGAACTCTGACCTCA+TGG - chr4_2:43390957-43390976 Msa0601070:CDS 50.0%
CATCAACCGAGTTGTCTGCT+TGG - chr4_2:43391007-43391026 Msa0601070:CDS 50.0%
GCCGCGAAGATAAAGAGCAA+TGG - chr4_2:43391102-43391121 Msa0601070:CDS 50.0%
CTTGCTTCTCTCTCTTGACC+TGG + chr4_2:43391140-43391159 None:intergenic 50.0%
CAGGTCAAGAGAGAGAAGCA+AGG - chr4_2:43391138-43391157 Msa0601070:CDS 50.0%
GGTCAAGAGAGAGAAGCAAG+GGG - chr4_2:43391140-43391159 Msa0601070:CDS 50.0%
AAGAGAGAGAAGCAAGGGGA+GGG - chr4_2:43391144-43391163 Msa0601070:CDS 50.0%
!! TGTGGGTATTGGAAGGCAAC+AGG - chr4_2:43391188-43391207 Msa0601070:CDS 50.0%
!! TGGTGCCACATCTACTCATC+AGG - chr4_2:43392138-43392157 Msa0601070:CDS 50.0%
ATGCCACTAGAGGTTGTAGG+AGG - chr4_2:43392214-43392233 Msa0601070:intron 50.0%
GAACCTCCTACAACCTCTAG+TGG + chr4_2:43392220-43392239 None:intergenic 50.0%
ACTTGACGGGGTCTTACTTG+AGG + chr4_2:43392375-43392394 None:intergenic 50.0%
ATGGAAGATACCTTCCCACC+TGG - chr4_2:43390701-43390720 Msa0601070:three_prime_UTR 50.0%
GAAACGAAAACCAGGTGGGA+AGG + chr4_2:43390714-43390733 None:intergenic 50.0%
GGGAAGAAACGAAAACCAGG+TGG + chr4_2:43390719-43390738 None:intergenic 50.0%
TGAGGTCAGAGTTCGAACTC+TGG + chr4_2:43390957-43390976 None:intergenic 50.0%
GAGTTCGAACTCTGACCTCA+TGG - chr4_2:43390957-43390976 Msa0601070:CDS 50.0%
CATCAACCGAGTTGTCTGCT+TGG - chr4_2:43391007-43391026 Msa0601070:CDS 50.0%
GCCGCGAAGATAAAGAGCAA+TGG - chr4_2:43391102-43391121 Msa0601070:CDS 50.0%
CTTGCTTCTCTCTCTTGACC+TGG + chr4_2:43391140-43391159 None:intergenic 50.0%
CAGGTCAAGAGAGAGAAGCA+AGG - chr4_2:43391138-43391157 Msa0601070:CDS 50.0%
GGTCAAGAGAGAGAAGCAAG+GGG - chr4_2:43391140-43391159 Msa0601070:CDS 50.0%
AAGAGAGAGAAGCAAGGGGA+GGG - chr4_2:43391144-43391163 Msa0601070:CDS 50.0%
!! TGTGGGTATTGGAAGGCAAC+AGG - chr4_2:43391188-43391207 Msa0601070:CDS 50.0%
!! TGGTGCCACATCTACTCATC+AGG - chr4_2:43392138-43392157 Msa0601070:CDS 50.0%
ATGCCACTAGAGGTTGTAGG+AGG - chr4_2:43392214-43392233 Msa0601070:intron 50.0%
GAACCTCCTACAACCTCTAG+TGG + chr4_2:43392220-43392239 None:intergenic 50.0%
ACTTGACGGGGTCTTACTTG+AGG + chr4_2:43392375-43392394 None:intergenic 50.0%
CAAGAGAGAGAAGCAAGGGG+AGG - chr4_2:43391143-43391162 Msa0601070:CDS 55.0%
TGGAAGGCAACAGGTTCTCC+TGG - chr4_2:43391197-43391216 Msa0601070:CDS 55.0%
! GAGGTGTGGCAGTGTTGGAT+TGG + chr4_2:43391352-43391371 None:intergenic 55.0%
ATCCAACACTGCCACACCTC+AGG - chr4_2:43391352-43391371 Msa0601070:intron 55.0%
TACCTGAGGTGTGGCAGTGT+TGG + chr4_2:43391357-43391376 None:intergenic 55.0%
TTGAGGATCCCACCATGAGC+TGG + chr4_2:43392358-43392377 None:intergenic 55.0%
CAAGAGAGAGAAGCAAGGGG+AGG - chr4_2:43391143-43391162 Msa0601070:CDS 55.0%
TGGAAGGCAACAGGTTCTCC+TGG - chr4_2:43391197-43391216 Msa0601070:CDS 55.0%
! GAGGTGTGGCAGTGTTGGAT+TGG + chr4_2:43391352-43391371 None:intergenic 55.0%
ATCCAACACTGCCACACCTC+AGG - chr4_2:43391352-43391371 Msa0601070:intron 55.0%
TACCTGAGGTGTGGCAGTGT+TGG + chr4_2:43391357-43391376 None:intergenic 55.0%
TTGAGGATCCCACCATGAGC+TGG + chr4_2:43392358-43392377 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 43390674 43392624 43390674 ID=Msa0601070;Name=Msa0601070
chr4_2 mRNA 43390674 43392624 43390674 ID=Msa0601070-mRNA-1;Parent=Msa0601070;Name=Msa0601070-mRNA-1;_AED=0.10;_eAED=0.10;_QI=27|1|1|1|1|1|3|276|261
chr4_2 exon 43390674 43391288 43390674 ID=Msa0601070-mRNA-1:exon:9497;Parent=Msa0601070-mRNA-1
chr4_2 exon 43391925 43392214 43391925 ID=Msa0601070-mRNA-1:exon:9496;Parent=Msa0601070-mRNA-1
chr4_2 exon 43392441 43392624 43392441 ID=Msa0601070-mRNA-1:exon:9495;Parent=Msa0601070-mRNA-1
chr4_2 five_prime_UTR 43392598 43392624 43392598 ID=Msa0601070-mRNA-1:five_prime_utr;Parent=Msa0601070-mRNA-1
chr4_2 CDS 43392441 43392597 43392441 ID=Msa0601070-mRNA-1:cds;Parent=Msa0601070-mRNA-1
chr4_2 CDS 43391925 43392214 43391925 ID=Msa0601070-mRNA-1:cds;Parent=Msa0601070-mRNA-1
chr4_2 CDS 43390950 43391288 43390950 ID=Msa0601070-mRNA-1:cds;Parent=Msa0601070-mRNA-1
chr4_2 three_prime_UTR 43390674 43390949 43390674 ID=Msa0601070-mRNA-1:three_prime_utr;Parent=Msa0601070-mRNA-1
Gene Sequence

>Msa0601070

ATGGAAGATACCTTCCCACCTGGTTTTCGTTTCTTCCCAACTGAAGAAGAGCTTGTTAGCTTTTATCTAAATAATAAATTACAAGGCCAAACAAGTGCTATAGATAGGGTTATTCCAGTCATTGACATCAATGGTGTAGAACCATGGAACCTCCCAACTCTTGCGGGAGAGCTTTGCCGCGAAGATAAAGAGCAATGGTTTTTCTTTTCACCAGGTCAAGAGAGAGAAGCAAGGGGAGGGAGACCTAATAGAACTACTGCTTGTGGGTATTGGAAGGCAACAGGTTCTCCTGGTTATGTTTATTCTTCGGATAACAAAGTTATTGGGGTGAAAAAAACCATGGTGTTCTATAAAGGAAAAGCTCCAAGTGGAAGGAAAACAAAATGGAAGATGAATGAATACAGAGCCATTCAAGTATCTAACCAATCCAACACTGCCACACCTCAGTTGAGGAGAGAATTCAGTTTGTGTCGAGTGTATGTAATATCGGGAAGCTTTCGAGCATTTGATAGACGTCCATTAGAGAGAGAAAGAGTTGATCAATTACGGGTTAATGAGATTGATCAAAATCCATTTGGTGCCACATCTACTCATCAGGATGCAACAAGTTCATTTGAAATTTCTCAATTAGGGGGACTCCAAAGTAATCATATGCCACTAGAGGTTGTAGGAGGTTCAAATAGCACAAATTGGCATGTAAATAGTAACAATGAAAATAATGGTGATGAGGTTCAATTCCAAGAATCACTATGGGAATGGGACAGTGAACATTTTAATTGGTCCTAA
Protein sequence

>Msa0601070

MEDTFPPGFRFFPTEEELVSFYLNNKLQGQTSAIDRVIPVIDINGVEPWNLPTLAGELCREDKEQWFFFSPGQEREARGGRPNRTTACGYWKATGSPGYVYSSDNKVIGVKKTMVFYKGKAPSGRKTKWKMNEYRAIQVSNQSNTATPQLRREFSLCRVYVISGSFRAFDRRPLERERVDQLRVNEIDQNPFGATSTHQDATSSFEISQLGGLQSNHMPLEVVGGSNSTNWHVNSNNENNGDEVQFQESLWEWDSEHFNWS*