Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0642420 | XP_013455885.1 | 94.419 | 645 | 29 | 2 | 1 | 645 | 1 | 638 | 0.0 | 1231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0642420 | sp|Q9FYC7|PDAT2_ARATH | 61.146 | 646 | 239 | 7 | 3 | 645 | 29 | 665 | 0.0 | 777 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0642420 | Msa1106590 | 0.802648 | 5.078146e-49 | -8.615850e-47 |
| Msa0642420 | Msa1401740 | 0.830237 | 3.288783e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0642420 | MtrunA17_Chr4g0027511 | 94.419 | 645 | 29 | 2 | 1 | 645 | 1 | 638 | 0.0 | 1231 |
| Msa0642420 | MtrunA17_Chr8g0343491 | 53.281 | 640 | 271 | 9 | 14 | 645 | 58 | 677 | 0.0 | 683 |
| Msa0642420 | MtrunA17_Chr6g0462921 | 38.462 | 78 | 33 | 1 | 202 | 279 | 63 | 125 | 5.54e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0642420 | AT3G44830.1 | 61.146 | 646 | 239 | 7 | 3 | 645 | 29 | 665 | 0.0 | 777 |
| Msa0642420 | AT5G13640.1 | 54.000 | 650 | 272 | 9 | 5 | 645 | 40 | 671 | 0.0 | 676 |
| Msa0642420 | AT5G13640.3 | 53.889 | 540 | 229 | 8 | 108 | 645 | 6 | 527 | 0.0 | 547 |
| Msa0642420 | AT5G13640.2 | 53.471 | 533 | 228 | 8 | 115 | 645 | 1 | 515 | 0.0 | 530 |
Find 153 sgRNAs with CRISPR-Local
Find 324 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCCTCCATTTCCTAAAA+TGG | 0.106647 | 4_3:+43992590 | Msa0642420:CDS |
| CATCCTGTTGTTCTTGTTCC+TGG | 0.118959 | 4_3:+43990533 | Msa0642420:CDS |
| GTCAGCCTTAATAGAAAATT+TGG | 0.145337 | 4_3:+43992059 | Msa0642420:CDS |
| AGCGCGTGCCAACAACATTT+TGG | 0.150771 | 4_3:+43995049 | Msa0642420:CDS |
| CGCTAGATGAGTTATTAATT+TGG | 0.192454 | 4_3:-43994812 | None:intergenic |
| AATATATTGCTAACTGCTTT+TGG | 0.195787 | 4_3:-43992712 | None:intergenic |
| TTGCTTCTGGTTATCATATT+TGG | 0.201664 | 4_3:+43992037 | Msa0642420:CDS |
| TTTATTCCTCCATACTTTAT+AGG | 0.218413 | 4_3:-43993934 | None:intergenic |
| TATTTGTAATGTGCATATTT+AGG | 0.225116 | 4_3:-43994498 | None:intergenic |
| ACTACCCGATGCTCCGAATA+TGG | 0.256691 | 4_3:+43994698 | Msa0642420:CDS |
| ATCCGAACATGATAAGTTAA+AGG | 0.285055 | 4_3:-43994307 | None:intergenic |
| TGGGATTGTGACTGCTGGTT+TGG | 0.285942 | 4_3:+43990553 | Msa0642420:CDS |
| ATCAACACACCTCGGTGTTT+TGG | 0.287518 | 4_3:-43992143 | None:intergenic |
| GGTAGTTGTACCTCAATCTA+TGG | 0.305168 | 4_3:+43992558 | Msa0642420:CDS |
| CAGATGGTTTCACCGCCTTT+TGG | 0.312872 | 4_3:-43993781 | None:intergenic |
| AGACAGTATATTTCCATATT+CGG | 0.315498 | 4_3:-43994711 | None:intergenic |
| TATGGAGGAATAAACTCTTT+TGG | 0.332720 | 4_3:+43993943 | Msa0642420:CDS |
| CAAAAGGCGGTGAAACCATC+TGG | 0.335571 | 4_3:+43993782 | Msa0642420:CDS |
| ATAGAAAATTTGGCAAGAAT+TGG | 0.340569 | 4_3:+43992069 | Msa0642420:CDS |
| GACTGCTGGTTTGGAACTTT+GGG | 0.344887 | 4_3:+43990562 | Msa0642420:CDS |
| GATTACTGTTGTTGGTTGAT+TGG | 0.347454 | 4_3:+43990386 | Msa0642420:CDS |
| CGTTTGAATGTTGTAAGTTC+AGG | 0.349898 | 4_3:+43994888 | Msa0642420:CDS |
| AGAACACGGTTCAATCCTTC+TGG | 0.351072 | 4_3:+43994939 | Msa0642420:CDS |
| ATGGAAATATACTGTCTATA+TGG | 0.353035 | 4_3:+43994717 | Msa0642420:CDS |
| TGACTGCTGGTTTGGAACTT+TGG | 0.354188 | 4_3:+43990561 | Msa0642420:CDS |
| GTTAAAGAACCTATAAAGTA+TGG | 0.355231 | 4_3:+43993925 | Msa0642420:CDS |
| TCACATTTACTCCATTCATT+AGG | 0.363288 | 4_3:-43993823 | None:intergenic |
| TGTTCTTCTGCGCCATCCTT+TGG | 0.363455 | 4_3:-43994922 | None:intergenic |
| ATCCTGTTGTTCTTGTTCCT+GGG | 0.366281 | 4_3:+43990534 | Msa0642420:CDS |
| CATCTGGGGCGACTTGGATT+CGG | 0.366339 | 4_3:+43993798 | Msa0642420:CDS |
| TTCCTTTAACTTATCATGTT+CGG | 0.368415 | 4_3:+43994305 | Msa0642420:CDS |
| CTCAGATATCCTCATGATAT+CGG | 0.383781 | 4_3:-43995153 | None:intergenic |
| TCGGCACGCTTCATCACATT+TGG | 0.384034 | 4_3:-43994435 | None:intergenic |
| ACTGCCCTGACTCGAATTCC+TGG | 0.391992 | 4_3:-43991988 | None:intergenic |
| ACTTATCATGTTCGGATGTT+CGG | 0.393703 | 4_3:+43994313 | Msa0642420:CDS |
| TTGGTTATGTGTGTACAATT+TGG | 0.396957 | 4_3:+43990405 | Msa0642420:CDS |
| AATATGCACATTACAAATAC+TGG | 0.402272 | 4_3:+43994502 | Msa0642420:CDS |
| TAACTCATCTAGCGTAGAAA+AGG | 0.404701 | 4_3:+43994821 | Msa0642420:CDS |
| TTTCCTCCATTTCCTAAAAT+GGG | 0.407748 | 4_3:+43992591 | Msa0642420:CDS |
| ACCCACCAGGAATTCGAGTC+AGG | 0.412402 | 4_3:+43991983 | Msa0642420:CDS |
| GTTCCTGGGATTGTGACTGC+TGG | 0.421055 | 4_3:+43990548 | Msa0642420:CDS |
| GAAAGACAGCCTCCAGTCAT+AGG | 0.421225 | 4_3:-43992121 | None:intergenic |
| AACACTTCCCAAAATGTTGT+TGG | 0.421853 | 4_3:-43995057 | None:intergenic |
| AATATCAGCCCGGCATTTCT+CGG | 0.423297 | 4_3:+43992685 | Msa0642420:CDS |
| GGAGCCACCGGTGTAACTAT+TGG | 0.425537 | 4_3:+43995113 | Msa0642420:CDS |
| CCTCCCATGGGTGGTGGTGG+TGG | 0.427685 | 4_3:+43992625 | Msa0642420:CDS |
| ATCTGGGGCGACTTGGATTC+GGG | 0.438140 | 4_3:+43993799 | Msa0642420:CDS |
| GACTGTTTAGGAAGAGATTG+TGG | 0.446238 | 4_3:+43990606 | Msa0642420:CDS |
| AATGATGTTTCTTTAGTTGA+CGG | 0.451788 | 4_3:+43994858 | Msa0642420:CDS |
| ATCCCAGGAACAAGAACAAC+AGG | 0.452659 | 4_3:-43990536 | None:intergenic |
| GTAAATGTGATCAGGTAAAG+AGG | 0.455853 | 4_3:+43993836 | Msa0642420:CDS |
| GCAGTGATGCTGCATTTGTC+AGG | 0.458112 | 4_3:+43992746 | Msa0642420:CDS |
| ACTGCATTGATTACTGTTGT+TGG | 0.458590 | 4_3:+43990378 | Msa0642420:CDS |
| ATTTCCATATTCGGAGCATC+GGG | 0.462366 | 4_3:-43994702 | None:intergenic |
| GAGCTTATGTATATAACAAA+TGG | 0.466054 | 4_3:+43992523 | Msa0642420:CDS |
| CATACTTACTTTGTTTCAAG+TGG | 0.470722 | 4_3:-43994531 | None:intergenic |
| CCGCCTCCCATGGGTGGTGG+TGG | 0.475149 | 4_3:+43992622 | Msa0642420:CDS |
| TTTGGAACACCGAGAAATGC+CGG | 0.476050 | 4_3:-43992694 | None:intergenic |
| CCCAAATGTTCCTAAAAGAA+AGG | 0.478695 | 4_3:+43994368 | Msa0642420:CDS |
| AGATGCTCTAACCAGCATAA+AGG | 0.479607 | 4_3:-43991934 | None:intergenic |
| GTTTGAATGTTGTAAGTTCA+GGG | 0.480165 | 4_3:+43994889 | Msa0642420:CDS |
| GCCGAGGCTCATTTCTCTGA+CGG | 0.483809 | 4_3:+43994453 | Msa0642420:CDS |
| GTAGTTGTACCTCAATCTAT+GGG | 0.483976 | 4_3:+43992559 | Msa0642420:CDS |
| CGAGTTGCTTCTGGAGCCAC+CGG | 0.486148 | 4_3:+43995101 | Msa0642420:CDS |
| TCTGCATAATGAGACTGGTC+TGG | 0.492498 | 4_3:+43991960 | Msa0642420:CDS |
| GTGGTGGTGGTGGTCCAGGT+TGG | 0.492891 | 4_3:+43992635 | Msa0642420:CDS |
| GTTATGTGTGTACAATTTGG+TGG | 0.493494 | 4_3:+43990408 | Msa0642420:CDS |
| GGTTGAGACACCGCCTCCCA+TGG | 0.494478 | 4_3:+43992612 | Msa0642420:CDS |
| TCGTCGGCAGCAACAAGCTC+GGG | 0.495087 | 4_3:-43992012 | None:intergenic |
| TATTTCCATATTCGGAGCAT+CGG | 0.495161 | 4_3:-43994703 | None:intergenic |
| TCAAAACCAGTTAATGTAGC+TGG | 0.495233 | 4_3:-43990458 | None:intergenic |
| AACTCATCTAGCGTAGAAAA+GGG | 0.496676 | 4_3:+43994822 | Msa0642420:CDS |
| CTCTCTCTGCATAATGAGAC+TGG | 0.497112 | 4_3:+43991955 | Msa0642420:CDS |
| TGAAACCATCTGGGGCGACT+TGG | 0.498231 | 4_3:+43993792 | Msa0642420:CDS |
| GAAGGGAGACCTTGTGCTGA+TGG | 0.498883 | 4_3:+43990584 | Msa0642420:CDS |
| TGAATGGAGTAAATGTGATC+AGG | 0.500127 | 4_3:+43993828 | Msa0642420:CDS |
| CTGGTTTGGAACTTTGGGAA+GGG | 0.504699 | 4_3:+43990567 | Msa0642420:CDS |
| TGGATTCGGGTCCTAATGAA+TGG | 0.505642 | 4_3:+43993812 | Msa0642420:CDS |
| TGGTTGATTCACCTGGTTTG+AGG | 0.506730 | 4_3:+43990483 | Msa0642420:CDS |
| AAAGAAGCAAAGTAAAGTGA+AGG | 0.506839 | 4_3:+43990346 | Msa0642420:CDS |
| TGATTACCTTGGTCTTCAAA+CGG | 0.508876 | 4_3:+43993705 | Msa0642420:CDS |
| ATCATCTCATTGATGCCAAA+AGG | 0.509480 | 4_3:+43993766 | Msa0642420:CDS |
| GATGAGTTATTAATTTGGAA+AGG | 0.515416 | 4_3:-43994807 | None:intergenic |
| CTTGTGCTGATGGACTGTTT+AGG | 0.518343 | 4_3:+43990594 | Msa0642420:CDS |
| TCTTGCGAGTATGTAGAACT+TGG | 0.518457 | 4_3:+43993737 | Msa0642420:CDS |
| AGCAAAGTAAAGTGAAGGGG+TGG | 0.519219 | 4_3:+43990351 | Msa0642420:CDS |
| ATCGTCGGCAGCAACAAGCT+CGG | 0.520423 | 4_3:-43992013 | None:intergenic |
| TGCACATGGCTTCCTATGAC+TGG | 0.520435 | 4_3:+43992109 | Msa0642420:CDS |
| GTACGAGGTAGTGTTCTTGA+AGG | 0.522599 | 4_3:+43995008 | Msa0642420:CDS |
| GGTTCATGTGCGCCAAAGGA+TGG | 0.523331 | 4_3:+43994910 | Msa0642420:CDS |
| TTGGAACACCGAGAAATGCC+GGG | 0.523951 | 4_3:-43992693 | None:intergenic |
| CCTAAAAGAAAGGCTAGTAC+AGG | 0.525616 | 4_3:+43994378 | Msa0642420:CDS |
| CTTTAAAATGCCAGAAGTCA+CGG | 0.525794 | 4_3:-43993680 | None:intergenic |
| TGGCAATTAGGCCTTTATGC+TGG | 0.530788 | 4_3:+43991923 | Msa0642420:intron |
| CCCTGACTCGAATTCCTGGT+GGG | 0.533011 | 4_3:-43991984 | None:intergenic |
| AAAAGGCGGTGAAACCATCT+GGG | 0.535354 | 4_3:+43993783 | Msa0642420:CDS |
| AAGAAGCAAAGTAAAGTGAA+GGG | 0.538809 | 4_3:+43990347 | Msa0642420:CDS |
| TCAGGGTTCATGTGCGCCAA+AGG | 0.543574 | 4_3:+43994906 | Msa0642420:CDS |
| AACAAATGGCTATAAGAAAG+TGG | 0.545400 | 4_3:+43992537 | Msa0642420:CDS |
| TAAATGTGATCAGGTAAAGA+GGG | 0.546659 | 4_3:+43993837 | Msa0642420:CDS |
| CCGAGGCTCATTTCTCTGAC+GGG | 0.550249 | 4_3:+43994454 | Msa0642420:CDS |
| TGGCAAGAATTGGTTACGAA+GGG | 0.553618 | 4_3:+43992079 | Msa0642420:CDS |
| TTTGAAGTGGTTGATTCACC+TGG | 0.558776 | 4_3:+43990476 | Msa0642420:CDS |
| GCTGGTTTGGAACTTTGGGA+AGG | 0.558892 | 4_3:+43990566 | Msa0642420:CDS |
| TTGGCAAGAATTGGTTACGA+AGG | 0.564599 | 4_3:+43992078 | Msa0642420:CDS |
| ACACCGCCTCCCATGGGTGG+TGG | 0.565944 | 4_3:+43992619 | Msa0642420:CDS |
| GTTGAGACACCGCCTCCCAT+GGG | 0.567506 | 4_3:+43992613 | Msa0642420:CDS |
| AGCAATCATGAATATCAGCC+CGG | 0.569294 | 4_3:+43992675 | Msa0642420:CDS |
| CTTGCGAGTATGTAGAACTT+GGG | 0.569603 | 4_3:+43993738 | Msa0642420:CDS |
| CCACCACCACCCATGGGAGG+CGG | 0.570935 | 4_3:-43992622 | None:intergenic |
| CGAATCCAAGTCGCCCCAGA+TGG | 0.574839 | 4_3:-43993797 | None:intergenic |
| AAACCAGCAGTCACAATCCC+AGG | 0.575877 | 4_3:-43990551 | None:intergenic |
| ACGGTTCAATCCTTCTGGAA+TGG | 0.578120 | 4_3:+43994944 | Msa0642420:CDS |
| ACTTTATAGGTTCTTTAACG+TGG | 0.580240 | 4_3:-43993921 | None:intergenic |
| CGAAGCAAGTAACTGCGAAA+CGG | 0.582127 | 4_3:-43993971 | None:intergenic |
| GAGACACCGCCTCCCATGGG+TGG | 0.586020 | 4_3:+43992616 | Msa0642420:CDS |
| CCCGTCAGAGAAATGAGCCT+CGG | 0.589581 | 4_3:-43994454 | None:intergenic |
| GCCCTGACTCGAATTCCTGG+TGG | 0.593334 | 4_3:-43991985 | None:intergenic |
| GCCACCGGTGTAACTATTGG+AGG | 0.593714 | 4_3:+43995116 | Msa0642420:CDS |
| ACTGTTTAGGAAGAGATTGT+GGG | 0.602326 | 4_3:+43990607 | Msa0642420:CDS |
| ATATGCTTGTACTTGTCAGA+AGG | 0.605428 | 4_3:-43994783 | None:intergenic |
| TACACTTGATTCAGAAGCAG+AGG | 0.610882 | 4_3:+43994002 | Msa0642420:CDS |
| CCACCACCACCACCCATGGG+AGG | 0.614770 | 4_3:-43992625 | None:intergenic |
| TAGTTGTACCTCAATCTATG+GGG | 0.617016 | 4_3:+43992560 | Msa0642420:CDS |
| TACGAGGTAGTGTTCTTGAA+GGG | 0.622527 | 4_3:+43995009 | Msa0642420:CDS |
| AGAAGCAAAGTAAAGTGAAG+GGG | 0.622836 | 4_3:+43990348 | Msa0642420:CDS |
| ACATGGCTTCCTATGACTGG+AGG | 0.623723 | 4_3:+43992112 | Msa0642420:CDS |
| TTGAACATAATCATAGTCTG+AGG | 0.624029 | 4_3:-43995184 | None:intergenic |
| CTAAACAGTCCATCAGCACA+AGG | 0.624539 | 4_3:-43990593 | None:intergenic |
| ATCGCCTCCAATAGTTACAC+CGG | 0.625759 | 4_3:-43995120 | None:intergenic |
| TGTACATGTGATCTTGTAGT+CGG | 0.627558 | 4_3:-43994750 | None:intergenic |
| CGAAGGGAAGAACTTGCACA+TGG | 0.629333 | 4_3:+43992095 | Msa0642420:CDS |
| GAATGTAATGAGATATGTAG+AGG | 0.629569 | 4_3:+43994339 | Msa0642420:CDS |
| GAGACTGGTCTGGACCCACC+AGG | 0.631009 | 4_3:+43991970 | Msa0642420:CDS |
| AAAGAACCTATAAAGTATGG+AGG | 0.632909 | 4_3:+43993928 | Msa0642420:CDS |
| CCCACCAGGAATTCGAGTCA+GGG | 0.636571 | 4_3:+43991984 | Msa0642420:CDS |
| ATCTCATTGATGCCAAAAGG+CGG | 0.643250 | 4_3:+43993769 | Msa0642420:CDS |
| GAAGGGAGAAGTCTAGAGAG+CGG | 0.649585 | 4_3:+43995026 | Msa0642420:CDS |
| ATATACGTAGCCATTCCAGA+AGG | 0.653465 | 4_3:-43994954 | None:intergenic |
| GTGTAACTATTGGAGGCGAT+AGG | 0.665057 | 4_3:+43995123 | Msa0642420:CDS |
| GTTCAACCGTTTGAAGACCA+AGG | 0.665578 | 4_3:-43993711 | None:intergenic |
| GCCTCCAATAGTTACACCGG+TGG | 0.669222 | 4_3:-43995117 | None:intergenic |
| AAGGATGGCGCAGAAGAACA+CGG | 0.670355 | 4_3:+43994925 | Msa0642420:CDS |
| ATAACCAGAAGCAAAATCGT+CGG | 0.671502 | 4_3:-43992028 | None:intergenic |
| AAATGTGATCAGGTAAAGAG+GGG | 0.673154 | 4_3:+43993838 | Msa0642420:CDS |
| CTGTTTAGGAAGAGATTGTG+GGG | 0.674054 | 4_3:+43990608 | Msa0642420:CDS |
| AAATGTGATGAAGCGTGCCG+AGG | 0.675862 | 4_3:+43994437 | Msa0642420:CDS |
| AGTTGTACCTCAATCTATGG+GGG | 0.677192 | 4_3:+43992561 | Msa0642420:CDS |
| AGTAACAACACTTATAACTG+CGG | 0.702274 | 4_3:+43993880 | Msa0642420:CDS |
| AAACAACGAGGTAGTGTACG+AGG | 0.712095 | 4_3:+43994993 | Msa0642420:CDS |
| ATATCATGAGGATATCTGAG+AGG | 0.718835 | 4_3:+43995156 | Msa0642420:CDS |
| AAAGGCGGTGAAACCATCTG+GGG | 0.727551 | 4_3:+43993784 | Msa0642420:CDS |
| GCTGTCTTTCCAAAACACCG+AGG | 0.805594 | 4_3:+43992134 | Msa0642420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATTATAAGTTTAATGT+AGG | + | chr4_3:43991192-43991211 | Msa0642420:intron | 10.0% |
| !! | AAAATAAGTTTCAATTAATT+TGG | + | chr4_3:43992442-43992461 | Msa0642420:intron | 10.0% |
| !!! | TGATTTTATCAAATTATTAT+CGG | + | chr4_3:43993350-43993369 | Msa0642420:intron | 10.0% |
| !! | AAAAAAGAAAAACTCATTAT+TGG | - | chr4_3:43991889-43991908 | None:intergenic | 15.0% |
| !!! | TTTCCTTTTATTTTTCTTAT+CGG | + | chr4_3:43992348-43992367 | Msa0642420:intron | 15.0% |
| !! | TGTTTAACTATGAAAATATA+GGG | + | chr4_3:43993604-43993623 | Msa0642420:intron | 15.0% |
| !! | TCAAATTAATGAATCAAATA+GGG | - | chr4_3:43994652-43994671 | None:intergenic | 15.0% |
| !! | TTCAAATTAATGAATCAAAT+AGG | - | chr4_3:43994653-43994672 | None:intergenic | 15.0% |
| !!! | GAAATCTAGAATGATATAAT+GGG | - | chr4_3:43991546-43991565 | None:intergenic | 20.0% |
| !!! | TGAAATCTAGAATGATATAA+TGG | - | chr4_3:43991547-43991566 | None:intergenic | 20.0% |
| !!! | ATCAATTTTTGCATCTTAAT+TGG | + | chr4_3:43991754-43991773 | Msa0642420:intron | 20.0% |
| !!! | TTCTTTTTTCTTTTTTTGTG+TGG | + | chr4_3:43991900-43991919 | Msa0642420:intron | 20.0% |
| !! | TAAGAAAAATAAAAGGAAAG+CGG | - | chr4_3:43992347-43992366 | None:intergenic | 20.0% |
| !! | TAACCGATAAGAAAAATAAA+AGG | - | chr4_3:43992354-43992373 | None:intergenic | 20.0% |
| !! | AAGAAGTCAAATTGAAATAA+AGG | - | chr4_3:43992791-43992810 | None:intergenic | 20.0% |
| !! | ATAAGAAGAAAAACTGAATA+AGG | + | chr4_3:43993225-43993244 | Msa0642420:intron | 20.0% |
| !! | AGATAATATGAAAGTAAAAC+TGG | + | chr4_3:43993466-43993485 | Msa0642420:intron | 20.0% |
| !! | CTGTTTAACTATGAAAATAT+AGG | + | chr4_3:43993603-43993622 | Msa0642420:intron | 20.0% |
| !! | ATAATTAACGTAGTATATGA+TGG | + | chr4_3:43993634-43993653 | Msa0642420:intron | 20.0% |
| !!! | ATTTTAAAGTTTGATTACCT+TGG | + | chr4_3:43993694-43993713 | Msa0642420:CDS | 20.0% |
| !! | GAAAAACAAATAGTATCATA+TGG | - | chr4_3:43994030-43994049 | None:intergenic | 20.0% |
| !! | TATTTGTAATGTGCATATTT+AGG | - | chr4_3:43994501-43994520 | None:intergenic | 20.0% |
| ! | AGTTTATAGCATAGTTCATA+TGG | + | chr4_3:43990746-43990765 | Msa0642420:intron | 25.0% |
| !!! | ATGTTCTTGAAATTTTGACA+TGG | + | chr4_3:43990946-43990965 | Msa0642420:intron | 25.0% |
| !!! | TGTAATTGTTTGATTTGTCT+AGG | + | chr4_3:43991018-43991037 | Msa0642420:intron | 25.0% |
| !! | AACAGAAACTGAGAATTTTT+AGG | + | chr4_3:43991232-43991251 | Msa0642420:intron | 25.0% |
| !!! | AGAATTTTTAGGTAGGTATT+AGG | + | chr4_3:43991243-43991262 | Msa0642420:intron | 25.0% |
| ! | GTGGTTAATTATATCTTATG+CGG | + | chr4_3:43991338-43991357 | Msa0642420:intron | 25.0% |
| ! | AGTACTAACTGTTAACAAAA+GGG | - | chr4_3:43991410-43991429 | None:intergenic | 25.0% |
| ! | CATGCTTATTATGTTAAACT+TGG | + | chr4_3:43991575-43991594 | Msa0642420:intron | 25.0% |
| ! | TTGTAGAAAAGAAAAACTTG+TGG | + | chr4_3:43991700-43991719 | Msa0642420:intron | 25.0% |
| !! | AATAACAGAAGCTTTATCTT+TGG | - | chr4_3:43991835-43991854 | None:intergenic | 25.0% |
| !!! | TTTTTTCTTTTTTTGTGTGG+TGG | + | chr4_3:43991903-43991922 | Msa0642420:intron | 25.0% |
| !! | TCTTGCCAAATTTTCTATTA+AGG | - | chr4_3:43992067-43992086 | None:intergenic | 25.0% |
| ! | ATAGAAAATTTGGCAAGAAT+TGG | + | chr4_3:43992069-43992088 | Msa0642420:CDS | 25.0% |
| ! | AAGAAAAATAAAAGGAAAGC+GGG | - | chr4_3:43992346-43992365 | None:intergenic | 25.0% |
| !!! | TTTTGGCTATATAAGCATAA+AGG | - | chr4_3:43992384-43992403 | None:intergenic | 25.0% |
| !!! | TTTCTGCTTCATAACTTTTT+TGG | - | chr4_3:43992401-43992420 | None:intergenic | 25.0% |
| ! | GAGCTTATGTATATAACAAA+TGG | + | chr4_3:43992523-43992542 | Msa0642420:CDS | 25.0% |
| !! | AATATATTGCTAACTGCTTT+TGG | - | chr4_3:43992715-43992734 | None:intergenic | 25.0% |
| !! | CGAAATTTGAAGGTATAATT+TGG | + | chr4_3:43992815-43992834 | Msa0642420:intron | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+AGG | - | chr4_3:43992877-43992896 | None:intergenic | 25.0% |
| !! | AATAATCTGAAATCTACCTA+TGG | + | chr4_3:43993020-43993039 | Msa0642420:intron | 25.0% |
| ! | ATGCCATCATTAATAATCTA+AGG | + | chr4_3:43993137-43993156 | Msa0642420:intron | 25.0% |
| ! | TGCCATCATTAATAATCTAA+GGG | + | chr4_3:43993138-43993157 | Msa0642420:intron | 25.0% |
| !! | TTCAGTTTTTCTTCTTATCA+TGG | - | chr4_3:43993223-43993242 | None:intergenic | 25.0% |
| ! | TATCAAATTATTATCGGTGT+CGG | + | chr4_3:43993356-43993375 | Msa0642420:intron | 25.0% |
| ! | CATAGAAACGTATAAATAGA+TGG | - | chr4_3:43993554-43993573 | None:intergenic | 25.0% |
| ! | ATACGTTTCTATGAATCAAA+AGG | + | chr4_3:43993561-43993580 | Msa0642420:intron | 25.0% |
| !! | TTTTCATAGTTAAACAGTCT+AGG | - | chr4_3:43993600-43993619 | None:intergenic | 25.0% |
| ! | GTTAAAGAACCTATAAAGTA+TGG | + | chr4_3:43993925-43993944 | Msa0642420:CDS | 25.0% |
| ! | TTTATTCCTCCATACTTTAT+AGG | - | chr4_3:43993937-43993956 | None:intergenic | 25.0% |
| ! | TTGAACTATACTGATCAAAT+CGG | - | chr4_3:43994189-43994208 | None:intergenic | 25.0% |
| !! | TTCCTTTAACTTATCATGTT+CGG | + | chr4_3:43994305-43994324 | Msa0642420:CDS | 25.0% |
| ! | AATATGCACATTACAAATAC+TGG | + | chr4_3:43994502-43994521 | Msa0642420:CDS | 25.0% |
| ! | AGACAGTATATTTCCATATT+CGG | - | chr4_3:43994714-43994733 | None:intergenic | 25.0% |
| ! | ATGGAAATATACTGTCTATA+TGG | + | chr4_3:43994717-43994736 | Msa0642420:CDS | 25.0% |
| !! | GATGAGTTATTAATTTGGAA+AGG | - | chr4_3:43994810-43994829 | None:intergenic | 25.0% |
| ! | AATGATGTTTCTTTAGTTGA+CGG | + | chr4_3:43994858-43994877 | Msa0642420:CDS | 25.0% |
| AAAGAAGCAAAGTAAAGTGA+AGG | + | chr4_3:43990346-43990365 | Msa0642420:CDS | 30.0% | |
| AAGAAGCAAAGTAAAGTGAA+GGG | + | chr4_3:43990347-43990366 | Msa0642420:CDS | 30.0% | |
| TTGGTTATGTGTGTACAATT+TGG | + | chr4_3:43990405-43990424 | Msa0642420:CDS | 30.0% | |
| !!! | TACATTAACTGGTTTTGAAG+TGG | + | chr4_3:43990463-43990482 | Msa0642420:CDS | 30.0% |
| GTTTGAGGATGAAAAATGAA+GGG | + | chr4_3:43990498-43990517 | Msa0642420:CDS | 30.0% | |
| TTTGAGGATGAAAAATGAAG+GGG | + | chr4_3:43990499-43990518 | Msa0642420:CDS | 30.0% | |
| TTGGAGAATTTGAGAAAAAG+TGG | - | chr4_3:43990636-43990655 | None:intergenic | 30.0% | |
| ! | CTTTTTCTCAAATTCTCCAA+AGG | + | chr4_3:43990636-43990655 | Msa0642420:CDS | 30.0% |
| ! | TACTTTGTAGTTTGTACCAT+AGG | + | chr4_3:43990695-43990714 | Msa0642420:intron | 30.0% |
| CATAACACAATTTAGACCTA+TGG | - | chr4_3:43990714-43990733 | None:intergenic | 30.0% | |
| !! | CATATGGTAGTTCTAAATTG+AGG | + | chr4_3:43990762-43990781 | Msa0642420:intron | 30.0% |
| ! | GATTTTAGATGTCTCTACAA+CGG | + | chr4_3:43990808-43990827 | Msa0642420:intron | 30.0% |
| !! | AAATTTTGACATGGCTATTG+AGG | + | chr4_3:43990955-43990974 | Msa0642420:intron | 30.0% |
| ! | CTATTGAGGAAATTTGTTTG+AGG | + | chr4_3:43990969-43990988 | Msa0642420:intron | 30.0% |
| GCTAGTAAGTAAAATACTCA+TGG | - | chr4_3:43991169-43991188 | None:intergenic | 30.0% | |
| !!! | GAAACTGAGAATTTTTAGGT+AGG | + | chr4_3:43991236-43991255 | Msa0642420:intron | 30.0% |
| GTATTAGGTAATGTTAACCA+AGG | + | chr4_3:43991258-43991277 | Msa0642420:intron | 30.0% | |
| CAGTACTAACTGTTAACAAA+AGG | - | chr4_3:43991411-43991430 | None:intergenic | 30.0% | |
| GGTAGATGAAAGGAAATTTA+AGG | + | chr4_3:43991457-43991476 | Msa0642420:intron | 30.0% | |
| AGATGAAAGGAAATTTAAGG+AGG | + | chr4_3:43991460-43991479 | Msa0642420:intron | 30.0% | |
| AGATGGATCAAACTATTACA+TGG | - | chr4_3:43991639-43991658 | None:intergenic | 30.0% | |
| AATAGTTTGATCCATCTAGA+CGG | + | chr4_3:43991642-43991661 | Msa0642420:intron | 30.0% | |
| ! | TTGCTTCTGGTTATCATATT+TGG | + | chr4_3:43992037-43992056 | Msa0642420:CDS | 30.0% |
| GTCAGCCTTAATAGAAAATT+TGG | + | chr4_3:43992059-43992078 | Msa0642420:CDS | 30.0% | |
| ! | TTTTCAATCTACTAAGAGCT+TGG | - | chr4_3:43992495-43992514 | None:intergenic | 30.0% |
| AACAAATGGCTATAAGAAAG+TGG | + | chr4_3:43992537-43992556 | Msa0642420:CDS | 30.0% | |
| ATTTCCTCCATTTCCTAAAA+TGG | + | chr4_3:43992590-43992609 | Msa0642420:CDS | 30.0% | |
| TTTCCTCCATTTCCTAAAAT+GGG | + | chr4_3:43992591-43992610 | Msa0642420:CDS | 30.0% | |
| ! | AGCAATATATTTTCAGCTGA+AGG | + | chr4_3:43992724-43992743 | Msa0642420:CDS | 30.0% |
| ! | AAATAAAGGATTGTGTTGCT+AGG | - | chr4_3:43992777-43992796 | None:intergenic | 30.0% |
| TTATAGCATAAGTGCTTATG+TGG | + | chr4_3:43992904-43992923 | Msa0642420:intron | 30.0% | |
| ! | GCTCTTTTCATCAGTTATTA+TGG | + | chr4_3:43992985-43993004 | Msa0642420:intron | 30.0% |
| TCAACCAAACCAATCTAAAT+AGG | + | chr4_3:43993108-43993127 | Msa0642420:intron | 30.0% | |
| ATTATTAATGATGGCATCCA+AGG | - | chr4_3:43993134-43993153 | None:intergenic | 30.0% | |
| GCCATCATTAATAATCTAAG+GGG | + | chr4_3:43993139-43993158 | Msa0642420:intron | 30.0% | |
| TCCCCTTAGATTATTAATGA+TGG | - | chr4_3:43993143-43993162 | None:intergenic | 30.0% | |
| ! | GGATTTTAAATGTGAACTTC+AGG | + | chr4_3:43993160-43993179 | Msa0642420:intron | 30.0% |
| GAACTTCAGGAAAATATTGA+AGG | + | chr4_3:43993173-43993192 | Msa0642420:intron | 30.0% | |
| AGGTATCATCAATGTTAAGT+TGG | + | chr4_3:43993193-43993212 | Msa0642420:intron | 30.0% | |
| TCACATTTACTCCATTCATT+AGG | - | chr4_3:43993826-43993845 | None:intergenic | 30.0% | |
| TAAATGTGATCAGGTAAAGA+GGG | + | chr4_3:43993837-43993856 | Msa0642420:CDS | 30.0% | |
| AGTAACAACACTTATAACTG+CGG | + | chr4_3:43993880-43993899 | Msa0642420:CDS | 30.0% | |
| ACTTTATAGGTTCTTTAACG+TGG | - | chr4_3:43993924-43993943 | None:intergenic | 30.0% | |
| AAAGAACCTATAAAGTATGG+AGG | + | chr4_3:43993928-43993947 | Msa0642420:CDS | 30.0% | |
| ! | TATGGAGGAATAAACTCTTT+TGG | + | chr4_3:43993943-43993962 | Msa0642420:CDS | 30.0% |
| ATCCGAACATGATAAGTTAA+AGG | - | chr4_3:43994310-43994329 | None:intergenic | 30.0% | |
| GAATGTAATGAGATATGTAG+AGG | + | chr4_3:43994339-43994358 | Msa0642420:CDS | 30.0% | |
| !! | CCTTTCTTTTAGGAACATTT+GGG | - | chr4_3:43994371-43994390 | None:intergenic | 30.0% |
| ! | CATACTTACTTTGTTTCAAG+TGG | - | chr4_3:43994534-43994553 | None:intergenic | 30.0% |
| CGCTAGATGAGTTATTAATT+TGG | - | chr4_3:43994815-43994834 | None:intergenic | 30.0% | |
| GTTTGAATGTTGTAAGTTCA+GGG | + | chr4_3:43994889-43994908 | Msa0642420:CDS | 30.0% | |
| AGAAGCAAAGTAAAGTGAAG+GGG | + | chr4_3:43990348-43990367 | Msa0642420:CDS | 35.0% | |
| !! | ACTGCATTGATTACTGTTGT+TGG | + | chr4_3:43990378-43990397 | Msa0642420:CDS | 35.0% |
| ! | GATTACTGTTGTTGGTTGAT+TGG | + | chr4_3:43990386-43990405 | Msa0642420:CDS | 35.0% |
| GTTATGTGTGTACAATTTGG+TGG | + | chr4_3:43990408-43990427 | Msa0642420:CDS | 35.0% | |
| ! | TTTTTGCCAGCTACATTAAC+TGG | + | chr4_3:43990452-43990471 | Msa0642420:CDS | 35.0% |
| TCAAAACCAGTTAATGTAGC+TGG | - | chr4_3:43990461-43990480 | None:intergenic | 35.0% | |
| !! | TCATTTTTCATCCTCAAACC+AGG | - | chr4_3:43990497-43990516 | None:intergenic | 35.0% |
| GGTTTGAGGATGAAAAATGA+AGG | + | chr4_3:43990497-43990516 | Msa0642420:CDS | 35.0% | |
| ACTGTTTAGGAAGAGATTGT+GGG | + | chr4_3:43990607-43990626 | Msa0642420:CDS | 35.0% | |
| ! | TGAGGAAATTTGTTTGAGGT+TGG | + | chr4_3:43990973-43990992 | Msa0642420:intron | 35.0% |
| ! | GAGGAAATTTGTTTGAGGTT+GGG | + | chr4_3:43990974-43990993 | Msa0642420:intron | 35.0% |
| GTAAAATACTCATGGTGACA+TGG | - | chr4_3:43991161-43991180 | None:intergenic | 35.0% | |
| GCTATAGTGATTGAAAACCT+TGG | - | chr4_3:43991278-43991297 | None:intergenic | 35.0% | |
| AATCACTATAGCAATTGCAG+TGG | + | chr4_3:43991286-43991305 | Msa0642420:intron | 35.0% | |
| CACTATTCTCTACAACATCA+AGG | - | chr4_3:43991321-43991340 | None:intergenic | 35.0% | |
| CTTGATGTTGTAGAGAATAG+TGG | + | chr4_3:43991319-43991338 | Msa0642420:intron | 35.0% | |
| ! | ACAGTTAGTACTGTTAGTCT+CGG | + | chr4_3:43991418-43991437 | Msa0642420:intron | 35.0% |
| ! | TACTGTTAGTCTCGGTATTT+AGG | + | chr4_3:43991426-43991445 | Msa0642420:intron | 35.0% |
| TGAAAGGAAATTTAAGGAGG+CGG | + | chr4_3:43991463-43991482 | Msa0642420:intron | 35.0% | |
| AAGGATTTGAGAGAAAGAGA+CGG | - | chr4_3:43991499-43991518 | None:intergenic | 35.0% | |
| CTCTCAAATCCTTGTAAATG+AGG | + | chr4_3:43991506-43991525 | Msa0642420:intron | 35.0% | |
| AAATCCTTGTAAATGAGGTG+AGG | + | chr4_3:43991511-43991530 | Msa0642420:intron | 35.0% | |
| AATCCTTGTAAATGAGGTGA+GGG | + | chr4_3:43991512-43991531 | Msa0642420:intron | 35.0% | |
| CCACAAATAAAATTCCCTGT+TGG | - | chr4_3:43991606-43991625 | None:intergenic | 35.0% | |
| !! | CCAACAGGGAATTTTATTTG+TGG | + | chr4_3:43991603-43991622 | Msa0642420:intron | 35.0% |
| !!! | TTTTTTGTGTGGTGGCAATT+AGG | + | chr4_3:43991911-43991930 | Msa0642420:intron | 35.0% |
| ATAACCAGAAGCAAAATCGT+CGG | - | chr4_3:43992031-43992050 | None:intergenic | 35.0% | |
| TTAAAACGATCAACACACCT+CGG | - | chr4_3:43992154-43992173 | None:intergenic | 35.0% | |
| !! | ATGAAGCAGAAAAGCATTGT+TGG | + | chr4_3:43992409-43992428 | Msa0642420:intron | 35.0% |
| GTAGTTGTACCTCAATCTAT+GGG | + | chr4_3:43992559-43992578 | Msa0642420:CDS | 35.0% | |
| TAGTTGTACCTCAATCTATG+GGG | + | chr4_3:43992560-43992579 | Msa0642420:CDS | 35.0% | |
| !! | TCTCAACCCATTTTAGGAAA+TGG | - | chr4_3:43992600-43992619 | None:intergenic | 35.0% |
| CTTCTTCATGCGAAATTTGA+AGG | + | chr4_3:43992805-43992824 | Msa0642420:intron | 35.0% | |
| AAGTAGATTGTGATCCTGTT+TGG | + | chr4_3:43992860-43992879 | Msa0642420:intron | 35.0% | |
| ! | CAGTTATTATGGAGAGCTTT+TGG | + | chr4_3:43992996-43993015 | Msa0642420:intron | 35.0% |
| AAGCACTTATGTGACTGTTT+AGG | - | chr4_3:43993072-43993091 | None:intergenic | 35.0% | |
| ! | AAGGCCTATTTAGATTGGTT+TGG | - | chr4_3:43993115-43993134 | None:intergenic | 35.0% |
| AAACCAATCTAAATAGGCCT+TGG | + | chr4_3:43993114-43993133 | Msa0642420:intron | 35.0% | |
| !! | CTTTAAAATGCCAGAAGTCA+CGG | - | chr4_3:43993683-43993702 | None:intergenic | 35.0% |
| ! | TGATTACCTTGGTCTTCAAA+CGG | + | chr4_3:43993705-43993724 | Msa0642420:CDS | 35.0% |
| ATCATCTCATTGATGCCAAA+AGG | + | chr4_3:43993766-43993785 | Msa0642420:CDS | 35.0% | |
| TGAATGGAGTAAATGTGATC+AGG | + | chr4_3:43993828-43993847 | Msa0642420:CDS | 35.0% | |
| GTAAATGTGATCAGGTAAAG+AGG | + | chr4_3:43993836-43993855 | Msa0642420:CDS | 35.0% | |
| AAATGTGATCAGGTAAAGAG+GGG | + | chr4_3:43993838-43993857 | Msa0642420:CDS | 35.0% | |
| ! | AGGAATAAACTCTTTTGGCA+AGG | + | chr4_3:43993948-43993967 | Msa0642420:CDS | 35.0% |
| CGTTACTGTACATGTTTACA+AGG | + | chr4_3:43994069-43994088 | Msa0642420:intron | 35.0% | |
| ACGGACAAAATAACAGTGAA+TGG | - | chr4_3:43994142-43994161 | None:intergenic | 35.0% | |
| !! | TTATTTTGTCCGTTTCTGCA+TGG | + | chr4_3:43994149-43994168 | Msa0642420:intron | 35.0% |
| TCCTGCAGAAAAGAGATATA+CGG | - | chr4_3:43994261-43994280 | None:intergenic | 35.0% | |
| ACTTATCATGTTCGGATGTT+CGG | + | chr4_3:43994313-43994332 | Msa0642420:CDS | 35.0% | |
| CCCAAATGTTCCTAAAAGAA+AGG | + | chr4_3:43994368-43994387 | Msa0642420:CDS | 35.0% | |
| !! | GCCTTTCTTTTAGGAACATT+TGG | - | chr4_3:43994372-43994391 | None:intergenic | 35.0% |
| TATTTCCATATTCGGAGCAT+CGG | - | chr4_3:43994706-43994725 | None:intergenic | 35.0% | |
| TGTACATGTGATCTTGTAGT+CGG | - | chr4_3:43994753-43994772 | None:intergenic | 35.0% | |
| ATATGCTTGTACTTGTCAGA+AGG | - | chr4_3:43994786-43994805 | None:intergenic | 35.0% | |
| TAACTCATCTAGCGTAGAAA+AGG | + | chr4_3:43994821-43994840 | Msa0642420:CDS | 35.0% | |
| AACTCATCTAGCGTAGAAAA+GGG | + | chr4_3:43994822-43994841 | Msa0642420:CDS | 35.0% | |
| CGTTTGAATGTTGTAAGTTC+AGG | + | chr4_3:43994888-43994907 | Msa0642420:CDS | 35.0% | |
| GAGTATCAACAAAAACAACG+AGG | + | chr4_3:43994981-43995000 | Msa0642420:CDS | 35.0% | |
| AACACTTCCCAAAATGTTGT+TGG | - | chr4_3:43995060-43995079 | None:intergenic | 35.0% | |
| ! | GGATATTTTCCGATATCATG+AGG | + | chr4_3:43995144-43995163 | Msa0642420:CDS | 35.0% |
| CTCAGATATCCTCATGATAT+CGG | - | chr4_3:43995156-43995175 | None:intergenic | 35.0% | |
| ATATCATGAGGATATCTGAG+AGG | + | chr4_3:43995156-43995175 | Msa0642420:CDS | 35.0% | |
| ! | TTTGAAGTGGTTGATTCACC+TGG | + | chr4_3:43990476-43990495 | Msa0642420:CDS | 40.0% |
| ATCCTGTTGTTCTTGTTCCT+GGG | + | chr4_3:43990534-43990553 | Msa0642420:CDS | 40.0% | |
| GACTGTTTAGGAAGAGATTG+TGG | + | chr4_3:43990606-43990625 | Msa0642420:CDS | 40.0% | |
| CTGTTTAGGAAGAGATTGTG+GGG | + | chr4_3:43990608-43990627 | Msa0642420:CDS | 40.0% | |
| ATGAGTAACACACACACCTT+TGG | - | chr4_3:43990655-43990674 | None:intergenic | 40.0% | |
| ! | ATTTGTTTGAGGTTGGGACA+TGG | + | chr4_3:43990980-43990999 | Msa0642420:intron | 40.0% |
| ! | TTTGTTTGAGGTTGGGACAT+GGG | + | chr4_3:43990981-43991000 | Msa0642420:intron | 40.0% |
| ! | TCTCGGTATTTAGGACTGAA+AGG | + | chr4_3:43991435-43991454 | Msa0642420:intron | 40.0% |
| ! | CTCGGTATTTAGGACTGAAA+GGG | + | chr4_3:43991436-43991455 | Msa0642420:intron | 40.0% |
| AGGATTTGAGAGAAAGAGAC+GGG | - | chr4_3:43991498-43991517 | None:intergenic | 40.0% | |
| TATCCCTCACCTCATTTACA+AGG | - | chr4_3:43991518-43991537 | None:intergenic | 40.0% | |
| TTAAACTTGGCATAGCCAAC+AGG | + | chr4_3:43991588-43991607 | Msa0642420:intron | 40.0% | |
| TAAACTTGGCATAGCCAACA+GGG | + | chr4_3:43991589-43991608 | Msa0642420:intron | 40.0% | |
| AGATGCTCTAACCAGCATAA+AGG | - | chr4_3:43991937-43991956 | None:intergenic | 40.0% | |
| TTGGCAAGAATTGGTTACGA+AGG | + | chr4_3:43992078-43992097 | Msa0642420:CDS | 40.0% | |
| TGGCAAGAATTGGTTACGAA+GGG | + | chr4_3:43992079-43992098 | Msa0642420:CDS | 40.0% | |
| ACGATGCGAGAATAAAGCTT+AGG | - | chr4_3:43992291-43992310 | None:intergenic | 40.0% | |
| GGTAGTTGTACCTCAATCTA+TGG | + | chr4_3:43992558-43992577 | Msa0642420:CDS | 40.0% | |
| AGTTGTACCTCAATCTATGG+GGG | + | chr4_3:43992561-43992580 | Msa0642420:CDS | 40.0% | |
| TAAATAGCCCCCATAGATTG+AGG | - | chr4_3:43992571-43992590 | None:intergenic | 40.0% | |
| !! | CAACCCATTTTAGGAAATGG+AGG | - | chr4_3:43992597-43992616 | None:intergenic | 40.0% |
| ! | ATATGCTTTTCACACCAACC+TGG | - | chr4_3:43992652-43992671 | None:intergenic | 40.0% |
| AGCAATCATGAATATCAGCC+CGG | + | chr4_3:43992675-43992694 | Msa0642420:CDS | 40.0% | |
| GAAACAATTGTCGAGTCCAT+AGG | - | chr4_3:43993039-43993058 | None:intergenic | 40.0% | |
| ! | TGACTGTTTAGGAGAGGTTT+TGG | - | chr4_3:43993061-43993080 | None:intergenic | 40.0% |
| CTTATGTGACTGTTTAGGAG+AGG | - | chr4_3:43993067-43993086 | None:intergenic | 40.0% | |
| CATCCAAGGCCTATTTAGAT+TGG | - | chr4_3:43993120-43993139 | None:intergenic | 40.0% | |
| TAAGGTGCAACTATGAAGCA+CGG | + | chr4_3:43993243-43993262 | Msa0642420:intron | 40.0% | |
| ! | AAGAAGCATGGATACGGATA+CGG | - | chr4_3:43993411-43993430 | None:intergenic | 40.0% |
| TATCCGTATCCATGCTTCTT+TGG | + | chr4_3:43993411-43993430 | Msa0642420:intron | 40.0% | |
| ATCCGTATCCATGCTTCTTT+GGG | + | chr4_3:43993412-43993431 | Msa0642420:intron | 40.0% | |
| TCTTGCGAGTATGTAGAACT+TGG | + | chr4_3:43993737-43993756 | Msa0642420:CDS | 40.0% | |
| CTTGCGAGTATGTAGAACTT+GGG | + | chr4_3:43993738-43993757 | Msa0642420:CDS | 40.0% | |
| ATCTCATTGATGCCAAAAGG+CGG | + | chr4_3:43993769-43993788 | Msa0642420:CDS | 40.0% | |
| TACACTTGATTCAGAAGCAG+AGG | + | chr4_3:43994002-43994021 | Msa0642420:CDS | 40.0% | |
| TGAATGGAACAGTACAGTAG+AGG | - | chr4_3:43994126-43994145 | None:intergenic | 40.0% | |
| TTCACACATCCATGCAGAAA+CGG | - | chr4_3:43994161-43994180 | None:intergenic | 40.0% | |
| ! | TCCGTATATCTCTTTTCTGC+AGG | + | chr4_3:43994257-43994276 | Msa0642420:intron | 40.0% |
| !!! | CCTGTACTAGCCTTTCTTTT+AGG | - | chr4_3:43994381-43994400 | None:intergenic | 40.0% |
| CCTAAAAGAAAGGCTAGTAC+AGG | + | chr4_3:43994378-43994397 | Msa0642420:CDS | 40.0% | |
| ! | ATTTCCATATTCGGAGCATC+GGG | - | chr4_3:43994705-43994724 | None:intergenic | 40.0% |
| ATATACGTAGCCATTCCAGA+AGG | - | chr4_3:43994957-43994976 | None:intergenic | 40.0% | |
| TACGAGGTAGTGTTCTTGAA+GGG | + | chr4_3:43995009-43995028 | Msa0642420:CDS | 40.0% | |
| ! | GATGTTTTACGAGTTGCTTC+TGG | + | chr4_3:43995092-43995111 | Msa0642420:CDS | 40.0% |
| AGCAAAGTAAAGTGAAGGGG+TGG | + | chr4_3:43990351-43990370 | Msa0642420:CDS | 45.0% | |
| ! | TGGTTGATTCACCTGGTTTG+AGG | + | chr4_3:43990483-43990502 | Msa0642420:CDS | 45.0% |
| CATCCTGTTGTTCTTGTTCC+TGG | + | chr4_3:43990533-43990552 | Msa0642420:CDS | 45.0% | |
| ATCCCAGGAACAAGAACAAC+AGG | - | chr4_3:43990539-43990558 | None:intergenic | 45.0% | |
| !! | TGACTGCTGGTTTGGAACTT+TGG | + | chr4_3:43990561-43990580 | Msa0642420:CDS | 45.0% |
| !! | GACTGCTGGTTTGGAACTTT+GGG | + | chr4_3:43990562-43990581 | Msa0642420:CDS | 45.0% |
| !! | CTGGTTTGGAACTTTGGGAA+GGG | + | chr4_3:43990567-43990586 | Msa0642420:CDS | 45.0% |
| CTAAACAGTCCATCAGCACA+AGG | - | chr4_3:43990596-43990615 | None:intergenic | 45.0% | |
| !! | CTTGTGCTGATGGACTGTTT+AGG | + | chr4_3:43990594-43990613 | Msa0642420:CDS | 45.0% |
| CGTTGCAAATGTAGCTGCAT+CGG | + | chr4_3:43990831-43990850 | Msa0642420:intron | 45.0% | |
| ATGCGGTCTCATTTGCATTG+CGG | + | chr4_3:43991355-43991374 | Msa0642420:intron | 45.0% | |
| GGACTGAAAGGGTAGATGAA+AGG | + | chr4_3:43991447-43991466 | Msa0642420:intron | 45.0% | |
| AAGGAAATTTAAGGAGGCGG+AGG | + | chr4_3:43991466-43991485 | Msa0642420:intron | 45.0% | |
| TGGCAATTAGGCCTTTATGC+TGG | + | chr4_3:43991923-43991942 | Msa0642420:intron | 45.0% | |
| CTCTCTCTGCATAATGAGAC+TGG | + | chr4_3:43991955-43991974 | Msa0642420:CDS | 45.0% | |
| ! | TCTGCATAATGAGACTGGTC+TGG | + | chr4_3:43991960-43991979 | Msa0642420:CDS | 45.0% |
| !!! | ATCAACACACCTCGGTGTTT+TGG | - | chr4_3:43992146-43992165 | None:intergenic | 45.0% |
| AAAGGAAAGCGGGTGAGATT+AGG | - | chr4_3:43992336-43992355 | None:intergenic | 45.0% | |
| AATATCAGCCCGGCATTTCT+CGG | + | chr4_3:43992685-43992704 | Msa0642420:CDS | 45.0% | |
| ! | TTTGGAACACCGAGAAATGC+CGG | - | chr4_3:43992697-43992716 | None:intergenic | 45.0% |
| ATCATGTGTCGTGTCAGTGT+CGG | - | chr4_3:43993316-43993335 | None:intergenic | 45.0% | |
| ! | CACCCAAAGAAGCATGGATA+CGG | - | chr4_3:43993417-43993436 | None:intergenic | 45.0% |
| GTTCAACCGTTTGAAGACCA+AGG | - | chr4_3:43993714-43993733 | None:intergenic | 45.0% | |
| AAAAGGCGGTGAAACCATCT+GGG | + | chr4_3:43993783-43993802 | Msa0642420:CDS | 45.0% | |
| TGGATTCGGGTCCTAATGAA+TGG | + | chr4_3:43993812-43993831 | Msa0642420:CDS | 45.0% | |
| CGAAGCAAGTAACTGCGAAA+CGG | - | chr4_3:43993974-43993993 | None:intergenic | 45.0% | |
| AGAACACGGTTCAATCCTTC+TGG | + | chr4_3:43994939-43994958 | Msa0642420:CDS | 45.0% | |
| ! | ACGGTTCAATCCTTCTGGAA+TGG | + | chr4_3:43994944-43994963 | Msa0642420:CDS | 45.0% |
| AAACAACGAGGTAGTGTACG+AGG | + | chr4_3:43994993-43995012 | Msa0642420:CDS | 45.0% | |
| GTACGAGGTAGTGTTCTTGA+AGG | + | chr4_3:43995008-43995027 | Msa0642420:CDS | 45.0% | |
| ATCGCCTCCAATAGTTACAC+CGG | - | chr4_3:43995123-43995142 | None:intergenic | 45.0% | |
| GTGTAACTATTGGAGGCGAT+AGG | + | chr4_3:43995123-43995142 | Msa0642420:CDS | 45.0% | |
| AAACCAGCAGTCACAATCCC+AGG | - | chr4_3:43990554-43990573 | None:intergenic | 50.0% | |
| ! | TGGGATTGTGACTGCTGGTT+TGG | + | chr4_3:43990553-43990572 | Msa0642420:CDS | 50.0% |
| !! | GCTGGTTTGGAACTTTGGGA+AGG | + | chr4_3:43990566-43990585 | Msa0642420:CDS | 50.0% |
| AAGCCGCGACATCAAATCCA+CGG | - | chr4_3:43991381-43991400 | None:intergenic | 50.0% | |
| CTCAAGTGACTCCGTCTAGA+TGG | - | chr4_3:43991656-43991675 | None:intergenic | 50.0% | |
| CGAAGGGAAGAACTTGCACA+TGG | + | chr4_3:43992095-43992114 | Msa0642420:CDS | 50.0% | |
| TGCACATGGCTTCCTATGAC+TGG | + | chr4_3:43992109-43992128 | Msa0642420:CDS | 50.0% | |
| ACATGGCTTCCTATGACTGG+AGG | + | chr4_3:43992112-43992131 | Msa0642420:CDS | 50.0% | |
| GAAAGACAGCCTCCAGTCAT+AGG | - | chr4_3:43992124-43992143 | None:intergenic | 50.0% | |
| GCTGTCTTTCCAAAACACCG+AGG | + | chr4_3:43992134-43992153 | Msa0642420:CDS | 50.0% | |
| ! | GCGGTGTCTCAACCCATTTT+AGG | - | chr4_3:43992606-43992625 | None:intergenic | 50.0% |
| TTGGAACACCGAGAAATGCC+GGG | - | chr4_3:43992696-43992715 | None:intergenic | 50.0% | |
| GCAGTGATGCTGCATTTGTC+AGG | + | chr4_3:43992746-43992765 | Msa0642420:CDS | 50.0% | |
| TATGAAGCACGGACACTCCT+TGG | + | chr4_3:43993254-43993273 | Msa0642420:intron | 50.0% | |
| ! | TCCTTGGATTAGGCGTGTCA+TGG | + | chr4_3:43993270-43993289 | Msa0642420:intron | 50.0% |
| ACCATGACACGCCTAATCCA+AGG | - | chr4_3:43993274-43993293 | None:intergenic | 50.0% | |
| GATTAGGCGTGTCATGGTGT+CGG | + | chr4_3:43993276-43993295 | Msa0642420:intron | 50.0% | |
| ATGGATACGGATACGGACAC+CGG | - | chr4_3:43993404-43993423 | None:intergenic | 50.0% | |
| ! | TTTTGCAGAGCCGTGACTTC+TGG | + | chr4_3:43993670-43993689 | Msa0642420:intron | 50.0% |
| ! | CAGATGGTTTCACCGCCTTT+TGG | - | chr4_3:43993784-43993803 | None:intergenic | 50.0% |
| CAAAAGGCGGTGAAACCATC+TGG | + | chr4_3:43993782-43993801 | Msa0642420:CDS | 50.0% | |
| AAAGGCGGTGAAACCATCTG+GGG | + | chr4_3:43993784-43993803 | Msa0642420:CDS | 50.0% | |
| TCGGCACGCTTCATCACATT+TGG | - | chr4_3:43994438-43994457 | None:intergenic | 50.0% | |
| AAATGTGATGAAGCGTGCCG+AGG | + | chr4_3:43994437-43994456 | Msa0642420:CDS | 50.0% | |
| ATAGCAGCGCTAAAGCGTAG+CGG | - | chr4_3:43994601-43994620 | None:intergenic | 50.0% | |
| ACTACCCGATGCTCCGAATA+TGG | + | chr4_3:43994698-43994717 | Msa0642420:CDS | 50.0% | |
| TGTTCTTCTGCGCCATCCTT+TGG | - | chr4_3:43994925-43994944 | None:intergenic | 50.0% | |
| AAGGATGGCGCAGAAGAACA+CGG | + | chr4_3:43994925-43994944 | Msa0642420:CDS | 50.0% | |
| GAAGGGAGAAGTCTAGAGAG+CGG | + | chr4_3:43995026-43995045 | Msa0642420:CDS | 50.0% | |
| ! | AGCGCGTGCCAACAACATTT+TGG | + | chr4_3:43995049-43995068 | Msa0642420:CDS | 50.0% |
| ! | GCGCGTGCCAACAACATTTT+GGG | + | chr4_3:43995050-43995069 | Msa0642420:CDS | 50.0% |
| GTTCCTGGGATTGTGACTGC+TGG | + | chr4_3:43990548-43990567 | Msa0642420:CDS | 55.0% | |
| GAAGGGAGACCTTGTGCTGA+TGG | + | chr4_3:43990584-43990603 | Msa0642420:CDS | 55.0% | |
| !!! | GCTGCATCGGCTGCTTTTGT+CGG | + | chr4_3:43990844-43990863 | Msa0642420:intron | 55.0% |
| TCTCATTTGCATTGCGGCCG+TGG | + | chr4_3:43991361-43991380 | Msa0642420:intron | 55.0% | |
| ACCCACCAGGAATTCGAGTC+AGG | + | chr4_3:43991983-43992002 | Msa0642420:CDS | 55.0% | |
| ! | CCCTGACTCGAATTCCTGGT+GGG | - | chr4_3:43991987-43992006 | None:intergenic | 55.0% |
| CCCACCAGGAATTCGAGTCA+GGG | + | chr4_3:43991984-43992003 | Msa0642420:CDS | 55.0% | |
| ! | ACTGCCCTGACTCGAATTCC+TGG | - | chr4_3:43991991-43992010 | None:intergenic | 55.0% |
| ATCGTCGGCAGCAACAAGCT+CGG | - | chr4_3:43992016-43992035 | None:intergenic | 55.0% | |
| ! | GCTGCCGACGATTTTGCTTC+TGG | + | chr4_3:43992024-43992043 | Msa0642420:CDS | 55.0% |
| GCACGGACACTCCTTGGATT+AGG | + | chr4_3:43993260-43993279 | Msa0642420:intron | 55.0% | |
| GTCAATGTCCGTGTCGTGTC+CGG | + | chr4_3:43993382-43993401 | Msa0642420:intron | 55.0% | |
| CGCTTGCACCCAAAGAAGCA+TGG | - | chr4_3:43993423-43993442 | None:intergenic | 55.0% | |
| ! | TGAAACCATCTGGGGCGACT+TGG | + | chr4_3:43993792-43993811 | Msa0642420:CDS | 55.0% |
| ! | CATCTGGGGCGACTTGGATT+CGG | + | chr4_3:43993798-43993817 | Msa0642420:CDS | 55.0% |
| ! | ATCTGGGGCGACTTGGATTC+GGG | + | chr4_3:43993799-43993818 | Msa0642420:CDS | 55.0% |
| GCCGAGGCTCATTTCTCTGA+CGG | + | chr4_3:43994453-43994472 | Msa0642420:CDS | 55.0% | |
| CCCGTCAGAGAAATGAGCCT+CGG | - | chr4_3:43994457-43994476 | None:intergenic | 55.0% | |
| CCGAGGCTCATTTCTCTGAC+GGG | + | chr4_3:43994454-43994473 | Msa0642420:CDS | 55.0% | |
| TCAGGGTTCATGTGCGCCAA+AGG | + | chr4_3:43994906-43994925 | Msa0642420:CDS | 55.0% | |
| GGTTCATGTGCGCCAAAGGA+TGG | + | chr4_3:43994910-43994929 | Msa0642420:CDS | 55.0% | |
| GGAGCCACCGGTGTAACTAT+TGG | + | chr4_3:43995113-43995132 | Msa0642420:CDS | 55.0% | |
| GCCACCGGTGTAACTATTGG+AGG | + | chr4_3:43995116-43995135 | Msa0642420:CDS | 55.0% | |
| GCCTCCAATAGTTACACCGG+TGG | - | chr4_3:43995120-43995139 | None:intergenic | 55.0% | |
| CGGCCGTGGATTTGATGTCG+CGG | + | chr4_3:43991375-43991394 | Msa0642420:intron | 60.0% | |
| ! | GCCCTGACTCGAATTCCTGG+TGG | - | chr4_3:43991988-43992007 | None:intergenic | 60.0% |
| TCGTCGGCAGCAACAAGCTC+GGG | - | chr4_3:43992015-43992034 | None:intergenic | 60.0% | |
| GTTGAGACACCGCCTCCCAT+GGG | + | chr4_3:43992613-43992632 | Msa0642420:CDS | 60.0% | |
| ! | TCATGGTGTCGGACACGCGT+CGG | + | chr4_3:43993287-43993306 | Msa0642420:intron | 60.0% |
| TACGGACACCGGACACGACA+CGG | - | chr4_3:43993393-43993412 | None:intergenic | 60.0% | |
| CGAATCCAAGTCGCCCCAGA+TGG | - | chr4_3:43993800-43993819 | None:intergenic | 60.0% | |
| !! | CGAGTTGCTTCTGGAGCCAC+CGG | + | chr4_3:43995101-43995120 | Msa0642420:CDS | 60.0% |
| !! | GAGACTGGTCTGGACCCACC+AGG | + | chr4_3:43991970-43991989 | Msa0642420:CDS | 65.0% |
| GGTTGAGACACCGCCTCCCA+TGG | + | chr4_3:43992612-43992631 | Msa0642420:CDS | 65.0% | |
| GGACCACCACCACCACCCAT+GGG | - | chr4_3:43992631-43992650 | None:intergenic | 65.0% | |
| TGGACCACCACCACCACCCA+TGG | - | chr4_3:43992632-43992651 | None:intergenic | 65.0% | |
| !! | ATGGGTGGTGGTGGTGGTCC+AGG | + | chr4_3:43992631-43992650 | Msa0642420:CDS | 65.0% |
| !! | GTGGTGGTGGTGGTCCAGGT+TGG | + | chr4_3:43992635-43992654 | Msa0642420:CDS | 65.0% |
| GAGACACCGCCTCCCATGGG+TGG | + | chr4_3:43992616-43992635 | Msa0642420:CDS | 70.0% | |
| ACACCGCCTCCCATGGGTGG+TGG | + | chr4_3:43992619-43992638 | Msa0642420:CDS | 70.0% | |
| CCACCACCACCCATGGGAGG+CGG | - | chr4_3:43992625-43992644 | None:intergenic | 70.0% | |
| CCACCACCACCACCCATGGG+AGG | - | chr4_3:43992628-43992647 | None:intergenic | 70.0% | |
| !! | CCTCCCATGGGTGGTGGTGG+TGG | + | chr4_3:43992625-43992644 | Msa0642420:CDS | 70.0% |
| ! | CCGCCTCCCATGGGTGGTGG+TGG | + | chr4_3:43992622-43992641 | Msa0642420:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 43990338 | 43995196 | 43990338 | ID=Msa0642420;Name=Msa0642420 |
| chr4_3 | mRNA | 43990338 | 43995196 | 43990338 | ID=Msa0642420-mRNA-1;Parent=Msa0642420;Name=Msa0642420-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0.33|1|1|1|6|0|645 |
| chr4_3 | exon | 43990338 | 43990657 | 43990338 | ID=Msa0642420-mRNA-1:exon:10077;Parent=Msa0642420-mRNA-1 |
| chr4_3 | exon | 43991933 | 43992155 | 43991933 | ID=Msa0642420-mRNA-1:exon:10078;Parent=Msa0642420-mRNA-1 |
| chr4_3 | exon | 43992484 | 43992767 | 43992484 | ID=Msa0642420-mRNA-1:exon:10079;Parent=Msa0642420-mRNA-1 |
| chr4_3 | exon | 43993678 | 43994023 | 43993678 | ID=Msa0642420-mRNA-1:exon:10080;Parent=Msa0642420-mRNA-1 |
| chr4_3 | exon | 43994279 | 43994544 | 43994279 | ID=Msa0642420-mRNA-1:exon:10081;Parent=Msa0642420-mRNA-1 |
| chr4_3 | exon | 43994698 | 43995196 | 43994698 | ID=Msa0642420-mRNA-1:exon:10082;Parent=Msa0642420-mRNA-1 |
| chr4_3 | CDS | 43990338 | 43990657 | 43990338 | ID=Msa0642420-mRNA-1:cds;Parent=Msa0642420-mRNA-1 |
| chr4_3 | CDS | 43991933 | 43992155 | 43991933 | ID=Msa0642420-mRNA-1:cds;Parent=Msa0642420-mRNA-1 |
| chr4_3 | CDS | 43992484 | 43992767 | 43992484 | ID=Msa0642420-mRNA-1:cds;Parent=Msa0642420-mRNA-1 |
| chr4_3 | CDS | 43993678 | 43994023 | 43993678 | ID=Msa0642420-mRNA-1:cds;Parent=Msa0642420-mRNA-1 |
| chr4_3 | CDS | 43994279 | 43994544 | 43994279 | ID=Msa0642420-mRNA-1:cds;Parent=Msa0642420-mRNA-1 |
| chr4_3 | CDS | 43994698 | 43995196 | 43994698 | ID=Msa0642420-mRNA-1:cds;Parent=Msa0642420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
