Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0642940 | XP_013455996.1 | 96.703 | 273 | 9 | 0 | 1 | 273 | 1 | 273 | 0.0 | 543 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0642940 | sp|Q9X248|FABG_THEMA | 35.039 | 254 | 155 | 6 | 11 | 264 | 3 | 246 | 2.53e-39 | 140 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0547080 | Msa0642940 | 0.918996 | 7.805570e-87 | -8.615850e-47 |
Msa0601810 | Msa0642940 | 0.801651 | 8.141334e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0642940 | MtrunA17_Chr4g0028921 | 96.703 | 273 | 9 | 0 | 1 | 273 | 1 | 273 | 0.0 | 543 |
Msa0642940 | MtrunA17_Chr4g0028911 | 94.872 | 273 | 14 | 0 | 1 | 273 | 1 | 273 | 0.0 | 533 |
Msa0642940 | MtrunA17_Chr1g0171831 | 70.472 | 254 | 70 | 1 | 4 | 252 | 7 | 260 | 5.43e-130 | 369 |
Msa0642940 | MtrunA17_Chr3g0122901 | 31.538 | 260 | 168 | 6 | 6 | 264 | 70 | 320 | 2.10e-31 | 118 |
Msa0642940 | MtrunA17_Chr1g0146811 | 30.952 | 252 | 172 | 2 | 14 | 264 | 6 | 256 | 7.79e-30 | 113 |
Msa0642940 | MtrunA17_Chr3g0112171 | 30.769 | 260 | 167 | 9 | 11 | 267 | 15 | 264 | 1.25e-27 | 107 |
Msa0642940 | MtrunA17_Chr4g0025971 | 31.852 | 270 | 158 | 8 | 11 | 270 | 14 | 267 | 7.50e-27 | 105 |
Msa0642940 | MtrunA17_Chr4g0026001 | 32.700 | 263 | 165 | 7 | 11 | 270 | 14 | 267 | 3.18e-26 | 103 |
Msa0642940 | MtrunA17_Chr3g0112151 | 30.268 | 261 | 169 | 9 | 10 | 267 | 85 | 335 | 5.16e-26 | 104 |
Msa0642940 | MtrunA17_Chr3g0112141 | 30.385 | 260 | 168 | 10 | 11 | 267 | 17 | 266 | 4.61e-25 | 100 |
Msa0642940 | MtrunA17_Chr4g0025981 | 30.534 | 262 | 170 | 7 | 13 | 271 | 43 | 295 | 5.19e-24 | 99.0 |
Msa0642940 | MtrunA17_Chr6g0459261 | 27.519 | 258 | 170 | 6 | 11 | 261 | 25 | 272 | 6.16e-24 | 97.8 |
Msa0642940 | MtrunA17_Chr3g0112261 | 29.119 | 261 | 172 | 9 | 10 | 267 | 18 | 268 | 8.27e-24 | 97.4 |
Msa0642940 | MtrunA17_Chr2g0324021 | 30.370 | 270 | 160 | 6 | 1 | 261 | 1 | 251 | 1.46e-23 | 96.7 |
Msa0642940 | MtrunA17_Chr4g0044131 | 31.439 | 264 | 164 | 7 | 1 | 261 | 4 | 253 | 1.54e-23 | 96.7 |
Msa0642940 | MtrunA17_Chr7g0270441 | 29.889 | 271 | 146 | 8 | 11 | 261 | 6 | 252 | 1.55e-23 | 96.3 |
Msa0642940 | MtrunA17_Chr3g0112271 | 31.034 | 261 | 167 | 11 | 10 | 267 | 16 | 266 | 2.12e-23 | 96.3 |
Msa0642940 | MtrunA17_Chr7g0239491 | 29.297 | 256 | 171 | 6 | 11 | 263 | 15 | 263 | 8.68e-23 | 94.4 |
Msa0642940 | MtrunA17_Chr7g0270451 | 31.783 | 258 | 157 | 7 | 11 | 261 | 6 | 251 | 9.11e-23 | 94.4 |
Msa0642940 | MtrunA17_Chr4g0032141 | 28.846 | 260 | 172 | 9 | 11 | 267 | 56 | 305 | 6.32e-22 | 92.8 |
Msa0642940 | MtrunA17_Chr6g0459281 | 28.627 | 255 | 155 | 8 | 11 | 253 | 13 | 252 | 7.36e-22 | 92.0 |
Msa0642940 | MtrunA17_Chr7g0239481 | 28.682 | 258 | 173 | 6 | 11 | 264 | 15 | 265 | 1.81e-21 | 90.9 |
Msa0642940 | MtrunA17_Chr6g0459331 | 26.641 | 259 | 171 | 6 | 11 | 261 | 13 | 260 | 1.01e-20 | 89.0 |
Msa0642940 | MtrunA17_Chr1g0191751 | 27.509 | 269 | 177 | 6 | 6 | 266 | 96 | 354 | 1.98e-20 | 89.4 |
Msa0642940 | MtrunA17_Chr7g0259531 | 29.167 | 264 | 178 | 7 | 1 | 261 | 1 | 258 | 6.33e-20 | 86.7 |
Msa0642940 | MtrunA17_Chr7g0239511 | 29.344 | 259 | 170 | 8 | 11 | 264 | 16 | 266 | 7.12e-20 | 86.7 |
Msa0642940 | MtrunA17_Chr3g0124471 | 32.990 | 194 | 115 | 7 | 15 | 206 | 30 | 210 | 1.07e-19 | 86.7 |
Msa0642940 | MtrunA17_Chr7g0259521 | 29.545 | 264 | 162 | 11 | 7 | 261 | 5 | 253 | 1.66e-19 | 85.5 |
Msa0642940 | MtrunA17_Chr7g0252031 | 29.389 | 262 | 167 | 7 | 11 | 263 | 35 | 287 | 1.67e-19 | 86.3 |
Msa0642940 | MtrunA17_Chr6g0459351 | 27.200 | 250 | 165 | 7 | 11 | 253 | 13 | 252 | 1.33e-18 | 83.2 |
Msa0642940 | MtrunA17_Chr4g0074511 | 28.519 | 270 | 162 | 11 | 7 | 261 | 36 | 289 | 1.60e-18 | 83.2 |
Msa0642940 | MtrunA17_Chr7g0239501 | 29.070 | 258 | 172 | 8 | 11 | 264 | 16 | 266 | 2.39e-18 | 82.4 |
Msa0642940 | MtrunA17_Chr7g0244061 | 29.455 | 275 | 163 | 8 | 11 | 263 | 29 | 294 | 2.45e-18 | 82.8 |
Msa0642940 | MtrunA17_Chr7g0267001 | 30.418 | 263 | 150 | 8 | 1 | 261 | 4 | 235 | 5.66e-18 | 81.3 |
Msa0642940 | MtrunA17_Chr7g0267011 | 32.461 | 191 | 120 | 5 | 11 | 200 | 8 | 190 | 6.94e-18 | 79.7 |
Msa0642940 | MtrunA17_Chr7g0239451 | 26.459 | 257 | 178 | 6 | 11 | 263 | 16 | 265 | 1.35e-17 | 80.1 |
Msa0642940 | MtrunA17_Chr7g0272961 | 23.985 | 271 | 180 | 7 | 6 | 264 | 35 | 291 | 1.48e-17 | 80.5 |
Msa0642940 | MtrunA17_Chr4g0040371 | 29.412 | 272 | 171 | 7 | 2 | 263 | 11 | 271 | 3.74e-17 | 79.3 |
Msa0642940 | MtrunA17_Chr0c30g0494101 | 28.519 | 270 | 160 | 11 | 7 | 261 | 36 | 287 | 7.45e-17 | 78.6 |
Msa0642940 | MtrunA17_Chr6g0459301 | 26.154 | 260 | 171 | 7 | 11 | 261 | 14 | 261 | 8.39e-17 | 78.2 |
Msa0642940 | MtrunA17_Chr3g0124481 | 39.130 | 138 | 77 | 5 | 70 | 206 | 64 | 195 | 1.08e-16 | 78.2 |
Msa0642940 | MtrunA17_Chr3g0084871 | 29.927 | 274 | 160 | 8 | 7 | 263 | 12 | 270 | 1.24e-16 | 77.8 |
Msa0642940 | MtrunA17_Chr6g0459271 | 25.591 | 254 | 180 | 5 | 11 | 261 | 13 | 260 | 1.38e-16 | 77.4 |
Msa0642940 | MtrunA17_Chr7g0249571 | 31.527 | 203 | 131 | 6 | 1 | 200 | 28 | 225 | 1.96e-16 | 77.8 |
Msa0642940 | MtrunA17_Chr7g0266981 | 29.630 | 270 | 167 | 9 | 11 | 270 | 13 | 269 | 2.02e-16 | 77.0 |
Msa0642940 | MtrunA17_Chr7g0268591 | 28.736 | 261 | 169 | 8 | 11 | 263 | 33 | 284 | 3.20e-16 | 77.0 |
Msa0642940 | MtrunA17_Chr4g0075531 | 27.757 | 263 | 168 | 9 | 5 | 261 | 1 | 247 | 3.54e-16 | 76.3 |
Msa0642940 | MtrunA17_Chr8g0357481 | 28.571 | 259 | 169 | 8 | 11 | 261 | 14 | 264 | 7.23e-16 | 75.9 |
Msa0642940 | MtrunA17_Chr3g0123251 | 30.000 | 190 | 126 | 4 | 13 | 199 | 53 | 238 | 9.24e-16 | 75.9 |
Msa0642940 | MtrunA17_Chr4g0044111 | 29.259 | 270 | 168 | 9 | 11 | 270 | 13 | 269 | 1.08e-15 | 75.1 |
Msa0642940 | MtrunA17_Chr8g0355281 | 29.231 | 195 | 132 | 4 | 16 | 206 | 74 | 266 | 1.13e-15 | 75.9 |
Msa0642940 | MtrunA17_Chr7g0266891 | 28.938 | 273 | 171 | 9 | 8 | 270 | 4 | 263 | 4.96e-15 | 73.2 |
Msa0642940 | MtrunA17_Chr8g0386201 | 28.500 | 200 | 136 | 5 | 9 | 208 | 43 | 235 | 5.96e-15 | 73.9 |
Msa0642940 | MtrunA17_Chr4g0054341 | 29.469 | 207 | 131 | 7 | 14 | 215 | 5 | 201 | 6.33e-15 | 73.2 |
Msa0642940 | MtrunA17_Chr6g0485711 | 25.000 | 216 | 147 | 4 | 5 | 206 | 172 | 386 | 2.49e-14 | 72.4 |
Msa0642940 | MtrunA17_Chr8g0381191 | 27.461 | 193 | 127 | 4 | 13 | 199 | 47 | 232 | 3.39e-14 | 71.2 |
Msa0642940 | MtrunA17_Chr4g0032181 | 25.907 | 193 | 138 | 4 | 72 | 264 | 60 | 247 | 4.38e-14 | 70.1 |
Msa0642940 | MtrunA17_Chr4g0045041 | 28.019 | 207 | 130 | 7 | 12 | 206 | 5 | 204 | 1.05e-12 | 67.8 |
Msa0642940 | MtrunA17_Chr4g0076931 | 28.283 | 198 | 134 | 6 | 11 | 206 | 6 | 197 | 4.40e-12 | 64.3 |
Msa0642940 | MtrunA17_Chr7g0262941 | 25.000 | 276 | 179 | 8 | 2 | 257 | 23 | 290 | 9.07e-12 | 64.3 |
Msa0642940 | MtrunA17_Chr6g0463951 | 26.744 | 172 | 112 | 3 | 97 | 261 | 1 | 165 | 1.26e-11 | 62.0 |
Msa0642940 | MtrunA17_Chr1g0182511 | 25.954 | 262 | 181 | 9 | 5 | 261 | 9 | 262 | 3.28e-11 | 62.4 |
Msa0642940 | MtrunA17_Chr3g0123231 | 28.000 | 200 | 137 | 5 | 13 | 208 | 46 | 242 | 4.16e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0642940 | AT3G55290.1 | 67.647 | 272 | 86 | 2 | 3 | 273 | 10 | 280 | 4.34e-137 | 388 |
Msa0642940 | AT3G55290.2 | 67.647 | 272 | 86 | 2 | 3 | 273 | 9 | 279 | 4.73e-137 | 388 |
Msa0642940 | AT3G55310.1 | 65.441 | 272 | 92 | 2 | 3 | 273 | 9 | 279 | 2.12e-133 | 379 |
Msa0642940 | AT3G46170.1 | 65.441 | 272 | 92 | 2 | 3 | 273 | 18 | 288 | 9.07e-133 | 377 |
Msa0642940 | AT1G62610.3 | 63.736 | 273 | 96 | 2 | 3 | 273 | 7 | 278 | 2.28e-130 | 371 |
Msa0642940 | AT1G62610.1 | 63.736 | 273 | 96 | 2 | 3 | 273 | 6 | 277 | 2.35e-130 | 370 |
Msa0642940 | AT1G62610.2 | 63.736 | 273 | 96 | 2 | 3 | 273 | 5 | 276 | 2.42e-130 | 370 |
Msa0642940 | AT1G62610.4 | 63.736 | 273 | 96 | 2 | 3 | 273 | 11 | 282 | 2.77e-130 | 370 |
Msa0642940 | AT1G63380.3 | 63.370 | 273 | 97 | 2 | 3 | 273 | 7 | 278 | 2.82e-130 | 370 |
Msa0642940 | AT1G63380.1 | 63.370 | 273 | 97 | 2 | 3 | 273 | 9 | 280 | 3.49e-130 | 370 |
Msa0642940 | AT1G63380.4 | 63.370 | 273 | 97 | 2 | 3 | 273 | 11 | 282 | 3.70e-130 | 370 |
Msa0642940 | AT1G63380.2 | 63.370 | 273 | 97 | 2 | 3 | 273 | 14 | 285 | 4.89e-130 | 370 |
Msa0642940 | AT2G17845.1 | 65.918 | 267 | 88 | 2 | 10 | 273 | 46 | 312 | 7.27e-128 | 366 |
Msa0642940 | AT3G01980.1 | 33.071 | 254 | 167 | 3 | 13 | 264 | 5 | 257 | 6.38e-42 | 145 |
Msa0642940 | AT3G01980.4 | 33.071 | 254 | 167 | 3 | 13 | 264 | 5 | 257 | 6.38e-42 | 145 |
Msa0642940 | AT3G01980.5 | 34.562 | 217 | 140 | 2 | 50 | 264 | 17 | 233 | 1.02e-38 | 136 |
Msa0642940 | AT3G01980.3 | 29.577 | 284 | 167 | 4 | 13 | 264 | 5 | 287 | 1.60e-35 | 129 |
Msa0642940 | AT5G06060.1 | 33.716 | 261 | 160 | 9 | 10 | 267 | 8 | 258 | 4.64e-30 | 114 |
Msa0642940 | AT1G24360.1 | 30.000 | 260 | 166 | 8 | 6 | 261 | 69 | 316 | 4.89e-28 | 110 |
Msa0642940 | AT3G01980.6 | 33.143 | 175 | 114 | 3 | 13 | 185 | 5 | 178 | 3.14e-26 | 101 |
Msa0642940 | AT2G29150.1 | 29.670 | 273 | 177 | 8 | 1 | 267 | 1 | 264 | 6.93e-24 | 97.8 |
Msa0642940 | AT3G51680.1 | 31.022 | 274 | 158 | 8 | 11 | 263 | 32 | 295 | 1.29e-23 | 97.8 |
Msa0642940 | AT3G26770.1 | 29.710 | 276 | 167 | 9 | 11 | 271 | 41 | 304 | 6.92e-23 | 95.9 |
Msa0642940 | AT2G29260.1 | 29.811 | 265 | 172 | 11 | 6 | 267 | 64 | 317 | 6.92e-23 | 96.3 |
Msa0642940 | AT5G18210.1 | 30.078 | 256 | 167 | 9 | 10 | 259 | 7 | 256 | 1.22e-22 | 94.4 |
Msa0642940 | AT2G29370.1 | 28.727 | 275 | 182 | 8 | 1 | 269 | 1 | 267 | 3.62e-22 | 93.2 |
Msa0642940 | AT4G13180.1 | 30.980 | 255 | 165 | 8 | 11 | 261 | 13 | 260 | 1.22e-21 | 91.7 |
Msa0642940 | AT2G29350.1 | 28.295 | 258 | 175 | 7 | 11 | 267 | 15 | 263 | 1.30e-21 | 91.7 |
Msa0642940 | AT3G26760.1 | 27.652 | 264 | 171 | 5 | 11 | 263 | 36 | 290 | 1.75e-20 | 89.4 |
Msa0642940 | AT5G65205.1 | 35.052 | 194 | 111 | 7 | 15 | 206 | 10 | 190 | 1.76e-20 | 89.0 |
Msa0642940 | AT1G07440.1 | 28.253 | 269 | 178 | 10 | 2 | 267 | 4 | 260 | 2.88e-20 | 87.8 |
Msa0642940 | AT2G29360.1 | 29.197 | 274 | 178 | 10 | 1 | 267 | 1 | 265 | 4.41e-20 | 87.4 |
Msa0642940 | AT1G54870.2 | 26.766 | 269 | 175 | 8 | 6 | 264 | 79 | 335 | 4.49e-20 | 88.6 |
Msa0642940 | AT1G54870.1 | 26.766 | 269 | 175 | 8 | 6 | 264 | 77 | 333 | 4.70e-20 | 88.6 |
Msa0642940 | AT5G10050.1 | 33.505 | 194 | 114 | 7 | 15 | 206 | 9 | 189 | 6.11e-20 | 87.4 |
Msa0642940 | AT2G29290.2 | 26.357 | 258 | 183 | 5 | 10 | 267 | 6 | 256 | 6.94e-20 | 87.0 |
Msa0642940 | AT3G47360.1 | 31.000 | 200 | 131 | 5 | 8 | 207 | 42 | 234 | 1.10e-19 | 87.0 |
Msa0642940 | AT3G03980.1 | 27.881 | 269 | 172 | 10 | 6 | 261 | 9 | 268 | 2.33e-19 | 85.5 |
Msa0642940 | AT5G18210.2 | 30.453 | 243 | 157 | 9 | 10 | 246 | 7 | 243 | 4.24e-19 | 85.1 |
Msa0642940 | AT1G52340.1 | 29.167 | 264 | 170 | 6 | 11 | 263 | 18 | 275 | 9.33e-19 | 84.3 |
Msa0642940 | AT1G67730.1 | 31.100 | 209 | 135 | 5 | 5 | 208 | 41 | 245 | 1.80e-18 | 84.0 |
Msa0642940 | AT2G30670.1 | 26.744 | 258 | 180 | 7 | 11 | 267 | 7 | 256 | 2.19e-18 | 82.8 |
Msa0642940 | AT1G49670.2 | 31.754 | 211 | 123 | 7 | 13 | 210 | 6 | 208 | 5.87e-18 | 84.0 |
Msa0642940 | AT1G49670.1 | 31.884 | 207 | 120 | 7 | 17 | 210 | 10 | 208 | 6.78e-18 | 83.6 |
Msa0642940 | AT3G47350.2 | 28.365 | 208 | 142 | 5 | 8 | 215 | 41 | 241 | 1.65e-17 | 81.3 |
Msa0642940 | AT3G47350.1 | 28.365 | 208 | 142 | 5 | 8 | 215 | 41 | 241 | 1.77e-17 | 80.9 |
Msa0642940 | AT1G10310.1 | 30.612 | 196 | 128 | 5 | 11 | 206 | 15 | 202 | 1.91e-17 | 79.7 |
Msa0642940 | AT2G29310.1 | 28.517 | 263 | 169 | 10 | 11 | 267 | 7 | 256 | 5.18e-17 | 79.0 |
Msa0642940 | AT5G50590.1 | 31.336 | 217 | 133 | 9 | 13 | 223 | 47 | 253 | 7.50e-17 | 79.0 |
Msa0642940 | AT5G50690.1 | 31.336 | 217 | 133 | 9 | 13 | 223 | 47 | 253 | 7.50e-17 | 79.0 |
Msa0642940 | AT2G47140.1 | 28.137 | 263 | 166 | 7 | 11 | 264 | 6 | 254 | 8.02e-17 | 78.2 |
Msa0642940 | AT5G50590.2 | 31.795 | 195 | 120 | 7 | 13 | 204 | 47 | 231 | 8.93e-17 | 78.2 |
Msa0642940 | AT5G50690.2 | 31.795 | 195 | 120 | 7 | 13 | 204 | 47 | 231 | 8.93e-17 | 78.2 |
Msa0642940 | AT3G42960.1 | 31.086 | 267 | 151 | 9 | 14 | 263 | 11 | 261 | 9.49e-17 | 78.6 |
Msa0642940 | AT1G24470.1 | 28.272 | 191 | 126 | 5 | 13 | 199 | 52 | 235 | 1.35e-16 | 78.6 |
Msa0642940 | AT3G05260.1 | 25.283 | 265 | 177 | 9 | 6 | 261 | 32 | 284 | 2.72e-16 | 77.4 |
Msa0642940 | AT2G29350.3 | 29.379 | 177 | 117 | 6 | 92 | 267 | 56 | 225 | 2.99e-16 | 76.3 |
Msa0642940 | AT2G47130.1 | 26.923 | 260 | 172 | 5 | 11 | 264 | 6 | 253 | 4.34e-16 | 76.3 |
Msa0642940 | AT5G50700.1 | 32.178 | 202 | 126 | 7 | 9 | 208 | 43 | 235 | 5.34e-16 | 77.4 |
Msa0642940 | AT5G50600.1 | 32.178 | 202 | 126 | 7 | 9 | 208 | 43 | 235 | 5.34e-16 | 77.4 |
Msa0642940 | AT2G29290.1 | 27.660 | 188 | 130 | 5 | 81 | 267 | 57 | 239 | 5.39e-16 | 75.9 |
Msa0642940 | AT2G47120.2 | 25.681 | 257 | 178 | 6 | 11 | 264 | 7 | 253 | 1.43e-15 | 75.1 |
Msa0642940 | AT2G47120.1 | 25.681 | 257 | 178 | 6 | 11 | 264 | 6 | 252 | 1.48e-15 | 74.7 |
Msa0642940 | AT1G07450.1 | 26.154 | 260 | 178 | 9 | 11 | 267 | 8 | 256 | 4.70e-15 | 73.6 |
Msa0642940 | AT5G61830.1 | 30.579 | 242 | 116 | 7 | 15 | 207 | 38 | 276 | 1.13e-14 | 73.2 |
Msa0642940 | AT5G61830.2 | 30.579 | 242 | 116 | 7 | 15 | 207 | 38 | 276 | 1.13e-14 | 73.2 |
Msa0642940 | AT2G29340.2 | 26.255 | 259 | 180 | 8 | 11 | 267 | 7 | 256 | 1.19e-14 | 72.4 |
Msa0642940 | AT2G29340.1 | 26.255 | 259 | 180 | 8 | 11 | 267 | 7 | 256 | 1.83e-14 | 72.4 |
Msa0642940 | AT3G29260.1 | 27.308 | 260 | 171 | 6 | 11 | 264 | 6 | 253 | 2.53e-14 | 71.2 |
Msa0642940 | AT2G29320.1 | 26.923 | 260 | 178 | 9 | 11 | 267 | 13 | 263 | 2.85e-14 | 71.2 |
Msa0642940 | AT3G29250.3 | 26.820 | 261 | 166 | 5 | 11 | 261 | 42 | 287 | 8.22e-14 | 70.5 |
Msa0642940 | AT5G04900.1 | 27.692 | 195 | 134 | 5 | 16 | 206 | 82 | 273 | 8.23e-14 | 70.9 |
Msa0642940 | AT3G04000.1 | 24.632 | 272 | 182 | 9 | 7 | 264 | 10 | 272 | 8.55e-14 | 70.1 |
Msa0642940 | AT3G29250.1 | 26.820 | 261 | 166 | 5 | 11 | 261 | 44 | 289 | 8.62e-14 | 70.5 |
Msa0642940 | AT3G29250.2 | 27.612 | 268 | 155 | 7 | 11 | 261 | 6 | 251 | 9.54e-14 | 69.7 |
Msa0642940 | AT4G03140.1 | 28.244 | 262 | 169 | 8 | 11 | 263 | 78 | 329 | 2.58e-13 | 69.3 |
Msa0642940 | AT3G03330.1 | 29.167 | 192 | 131 | 3 | 11 | 200 | 41 | 229 | 8.39e-13 | 67.8 |
Msa0642940 | AT2G29350.2 | 27.805 | 205 | 140 | 5 | 10 | 213 | 14 | 211 | 1.11e-12 | 66.2 |
Msa0642940 | AT2G29320.2 | 26.455 | 189 | 132 | 6 | 81 | 267 | 62 | 245 | 1.13e-12 | 66.6 |
Msa0642940 | AT2G29330.1 | 24.615 | 260 | 183 | 8 | 11 | 267 | 7 | 256 | 1.87e-12 | 66.2 |
Msa0642940 | AT5G50130.9 | 25.837 | 209 | 132 | 5 | 17 | 206 | 40 | 244 | 1.01e-11 | 63.9 |
Msa0642940 | AT2G29300.1 | 25.385 | 260 | 182 | 8 | 11 | 267 | 7 | 257 | 1.30e-11 | 63.9 |
Msa0642940 | AT2G37540.1 | 25.940 | 266 | 170 | 8 | 10 | 256 | 30 | 287 | 1.52e-11 | 63.9 |
Msa0642940 | AT2G29310.3 | 29.952 | 207 | 127 | 9 | 11 | 211 | 7 | 201 | 1.88e-11 | 62.4 |
Msa0642940 | AT5G50130.2 | 25.837 | 209 | 132 | 5 | 17 | 206 | 40 | 244 | 2.38e-11 | 63.5 |
Msa0642940 | AT5G50130.6 | 25.837 | 209 | 132 | 5 | 17 | 206 | 7 | 211 | 3.68e-11 | 62.8 |
Msa0642940 | AT5G50130.3 | 25.714 | 210 | 132 | 6 | 17 | 206 | 40 | 245 | 5.39e-11 | 62.0 |
Msa0642940 | AT4G23430.1 | 28.302 | 212 | 123 | 6 | 10 | 200 | 26 | 229 | 5.58e-11 | 62.4 |
Msa0642940 | AT5G50130.8 | 25.837 | 209 | 132 | 5 | 17 | 206 | 7 | 211 | 5.98e-11 | 62.4 |
Msa0642940 | AT4G23430.2 | 27.830 | 212 | 126 | 6 | 10 | 200 | 26 | 231 | 7.06e-11 | 62.0 |
Find 103 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAGTGCCCCATTCTCTTAA+TGG | 0.197409 | 4_3:-45254208 | None:intergenic |
CAGAAGGCGTGGGAGGCTTT+TGG | 0.287795 | 4_3:+45251203 | Msa0642940:CDS |
ATCAATATCTCTTCAATTGC+TGG | 0.294772 | 4_3:+45252855 | Msa0642940:CDS |
ACAGGTGATGGCATTGGAAT+TGG | 0.295752 | 4_3:+45254075 | Msa0642940:intron |
CAGGTGATGGCATTGGAATT+GGG | 0.298175 | 4_3:+45254076 | Msa0642940:intron |
GTGTTTAAAACAAACATAAA+TGG | 0.315012 | 4_3:+45252768 | Msa0642940:CDS |
AATGGGAAATGGGAAATTTC+GGG | 0.316857 | 4_3:-45250847 | None:intergenic |
ATTCATAGTGAGGAATAAAT+AGG | 0.326565 | 4_3:-45254337 | None:intergenic |
AAATGGGAAATGGGAAATTT+CGG | 0.331675 | 4_3:-45250848 | None:intergenic |
TGAATTTACTTACAACTTCA+TGG | 0.335158 | 4_3:+45250777 | Msa0642940:five_prime_UTR |
CTTGTCACCGGCGCATCAGC+AGG | 0.346471 | 4_3:+45250999 | Msa0642940:CDS |
TTTATGATGATTTATGGAAA+TGG | 0.358402 | 4_3:-45250865 | None:intergenic |
TTATGATGATTTATGGAAAT+GGG | 0.360560 | 4_3:-45250864 | None:intergenic |
ACGTGATTTCTGCCTTGATC+TGG | 0.366903 | 4_3:+45251028 | Msa0642940:CDS |
AAAATTTGATGAAGAAAGAT+TGG | 0.382710 | 4_3:+45254158 | Msa0642940:CDS |
TGCCTTGATCTGGCTCGTGC+TGG | 0.384037 | 4_3:+45251038 | Msa0642940:CDS |
ATCAATAATGCCGGTGTTAG+AGG | 0.395800 | 4_3:+45251242 | Msa0642940:CDS |
GGTGACAAGGACAACTTTGC+CGG | 0.399560 | 4_3:-45250985 | None:intergenic |
AACAGTGCCATTAAGAGAAT+GGG | 0.402159 | 4_3:+45254201 | Msa0642940:CDS |
GATGCTGGTGCTACCTTACC+AGG | 0.410122 | 4_3:+45254310 | Msa0642940:CDS |
TGATTTATGGAAATGGGAAA+TGG | 0.420633 | 4_3:-45250858 | None:intergenic |
ATTACAATTGATGTATAAGA+TGG | 0.423704 | 4_3:+45254507 | Msa0642940:three_prime_UTR |
GAGCTTGATGTGGCGGCTGA+TGG | 0.434808 | 4_3:+45251158 | Msa0642940:CDS |
GATTTATGGAAATGGGAAAT+GGG | 0.456699 | 4_3:-45250857 | None:intergenic |
CGAGCAATTGATGTTAATGC+TGG | 0.468893 | 4_3:-45254235 | None:intergenic |
ATTTCAGATTTGAAAAGTCC+TGG | 0.476294 | 4_3:-45254130 | None:intergenic |
AAATGGGAAATTTCGGGGAA+TGG | 0.480008 | 4_3:-45250841 | None:intergenic |
TTCAATTGCTGGCCTAGAGA+GGG | 0.482491 | 4_3:+45252866 | Msa0642940:CDS |
AATGAATGAATGTTGAGAAT+GGG | 0.486284 | 4_3:-45250890 | None:intergenic |
TCTTAATGGCACTGTTCTCA+TGG | 0.487179 | 4_3:-45254194 | None:intergenic |
GAACAGTGCCATTAAGAGAA+TGG | 0.491704 | 4_3:+45254200 | Msa0642940:CDS |
CTTGATGTGGCGGCTGATGG+TGG | 0.496263 | 4_3:+45251161 | Msa0642940:CDS |
GATGATTGATTTGGTGTTGG+TGG | 0.496340 | 4_3:-45250806 | None:intergenic |
GTGGTGAAGGATGATTGATT+TGG | 0.498870 | 4_3:-45250815 | None:intergenic |
AAGGATGATTGATTTGGTGT+TGG | 0.500947 | 4_3:-45250809 | None:intergenic |
AATATATTTATTGCTGATGC+TGG | 0.507646 | 4_3:+45254295 | Msa0642940:CDS |
GGCAAAGTTGTCCTTGTCAC+CGG | 0.508416 | 4_3:+45250987 | Msa0642940:CDS |
TCCGATCCCTGCTGATGCGC+CGG | 0.512043 | 4_3:-45251006 | None:intergenic |
TCTCATGGTTACTAATCTAC+AGG | 0.517926 | 4_3:+45254448 | Msa0642940:three_prime_UTR |
GAGGAATAAATAGGAAAGCC+TGG | 0.518416 | 4_3:-45254328 | None:intergenic |
AAAATATGATGAGTGAAACT+TGG | 0.523161 | 4_3:+45254389 | Msa0642940:three_prime_UTR |
AGGTGATGGCATTGGAATTG+GGG | 0.527360 | 4_3:+45254077 | Msa0642940:intron |
TGGAATTGACTGAGGAGGAA+TGG | 0.528283 | 4_3:+45252739 | Msa0642940:CDS |
CTGCTGATGCGCCGGTGACA+AGG | 0.532114 | 4_3:-45250998 | None:intergenic |
AGAAGTATGTACAGAAGGCG+TGG | 0.537432 | 4_3:+45251192 | Msa0642940:CDS |
AAATGAATGAATGTTGAGAA+TGG | 0.539277 | 4_3:-45250891 | None:intergenic |
TATAGAGAAGTATGTACAGA+AGG | 0.544134 | 4_3:+45251187 | Msa0642940:CDS |
CTTCAATTGCTGGCCTAGAG+AGG | 0.544592 | 4_3:+45252865 | Msa0642940:CDS |
CGACAAATATCATGTTGTTG+AGG | 0.544808 | 4_3:-45250687 | None:intergenic |
GCATATGCTTGTTCAAAGGC+AGG | 0.550266 | 4_3:+45252909 | Msa0642940:CDS |
AAGTCTCCGTGCAGTTGCGG+TGG | 0.551617 | 4_3:+45251136 | Msa0642940:CDS |
AAACAAACATAAATGGTACA+TGG | 0.552103 | 4_3:+45252775 | Msa0642940:CDS |
AGGAAATGTGAGTTCACCCT+TGG | 0.553066 | 4_3:+45252719 | Msa0642940:intron |
GATTCTTCTGAATATGTGAC+GGG | 0.553262 | 4_3:+45254271 | Msa0642940:CDS |
CGGGGAATGGAATGTGGTGA+AGG | 0.556548 | 4_3:-45250828 | None:intergenic |
ATAAATAGGAAAGCCTGGTA+AGG | 0.560891 | 4_3:-45254323 | None:intergenic |
TTCCTCCTCAGTCAATTCCA+AGG | 0.561664 | 4_3:-45252736 | None:intergenic |
AAACATAAATGGTACATGGT+TGG | 0.562444 | 4_3:+45252779 | Msa0642940:CDS |
ATTCAAATTACCTCTAACAC+CGG | 0.563895 | 4_3:-45251252 | None:intergenic |
ATCCAGCACGAGCCAGATCA+AGG | 0.564390 | 4_3:-45251040 | None:intergenic |
TGATTCTTCTGAATATGTGA+CGG | 0.567873 | 4_3:+45254270 | Msa0642940:CDS |
CAAGCATATGCAGTTCCACC+GGG | 0.568839 | 4_3:-45252897 | None:intergenic |
CATGAGTTAAGATGTTCTCA+TGG | 0.569138 | 4_3:+45254433 | Msa0642940:three_prime_UTR |
GAACCATGGCACGACCTCGC+CGG | 0.574081 | 4_3:+45250966 | Msa0642940:CDS |
TTACAATTGATGTATAAGAT+GGG | 0.574782 | 4_3:+45254508 | Msa0642940:three_prime_UTR |
GAAGTATGTACAGAAGGCGT+GGG | 0.575488 | 4_3:+45251193 | Msa0642940:CDS |
GATGAAATCAATGGAAAGGA+GGG | 0.578092 | 4_3:+45251113 | Msa0642940:CDS |
TGATATGATACACTTTGCAA+TGG | 0.578298 | 4_3:+45254363 | Msa0642940:three_prime_UTR |
TTGCCGGCGAGGTCGTGCCA+TGG | 0.580382 | 4_3:-45250969 | None:intergenic |
AAATTTCGGGGAATGGAATG+TGG | 0.581109 | 4_3:-45250834 | None:intergenic |
GGGAAGTCTCCGTGCAGTTG+CGG | 0.586746 | 4_3:+45251133 | Msa0642940:CDS |
TGCGGTGGAGCTTGATGTGG+CGG | 0.592898 | 4_3:+45251151 | Msa0642940:CDS |
AACTCATGCGTGATTCAAAG+AGG | 0.594350 | 4_3:+45252820 | Msa0642940:CDS |
CAAGGACAACTTTGCCGGCG+AGG | 0.595256 | 4_3:-45250980 | None:intergenic |
AAATTGACAGGTGATGGCAT+TGG | 0.597713 | 4_3:+45254069 | Msa0642940:intron |
ATGAATGAATGTTGAGAATG+GGG | 0.597936 | 4_3:-45250889 | None:intergenic |
ACCGGCGCATCAGCAGGGAT+CGG | 0.598824 | 4_3:+45251005 | Msa0642940:CDS |
ACAAGCATATGCAGTTCCAC+CGG | 0.601410 | 4_3:-45252898 | None:intergenic |
TCCTCCTCAGTCAATTCCAA+GGG | 0.607693 | 4_3:-45252735 | None:intergenic |
CATATCAAGTATTCATAGTG+AGG | 0.608610 | 4_3:-45254347 | None:intergenic |
GTATGTCTTAAAAGACAAGA+AGG | 0.608944 | 4_3:-45250746 | None:intergenic |
TGGCAAAGCAACTAGAACCA+TGG | 0.609409 | 4_3:+45250952 | Msa0642940:CDS |
TCAATTGCTGGCCTAGAGAG+GGG | 0.613681 | 4_3:+45252867 | Msa0642940:CDS |
AACTGCATATGCTTGTTCAA+AGG | 0.614285 | 4_3:+45252905 | Msa0642940:CDS |
TCATTGTGTGATGAAATCAA+TGG | 0.617419 | 4_3:+45251104 | Msa0642940:CDS |
CAATTGCTGGCCTAGAGAGG+GGG | 0.617473 | 4_3:+45252868 | Msa0642940:CDS |
ACCCTTGGAATTGACTGAGG+AGG | 0.618106 | 4_3:+45252734 | Msa0642940:CDS |
TGATGAAATCAATGGAAAGG+AGG | 0.620320 | 4_3:+45251112 | Msa0642940:CDS |
ATGCGTGATTCAAAGAGGAA+AGG | 0.620679 | 4_3:+45252825 | Msa0642940:CDS |
TTGTCACCGGCGCATCAGCA+GGG | 0.621162 | 4_3:+45251000 | Msa0642940:CDS |
GTATGTACAGAAGGCGTGGG+AGG | 0.634153 | 4_3:+45251196 | Msa0642940:CDS |
CAAGCTCCACCGCAACTGCA+CGG | 0.638345 | 4_3:-45251142 | None:intergenic |
AGTTGCGGTGGAGCTTGATG+TGG | 0.644706 | 4_3:+45251148 | Msa0642940:CDS |
GTGTGATGAAATCAATGGAA+AGG | 0.648715 | 4_3:+45251109 | Msa0642940:CDS |
AGAGTGAATTCAATATCACC+AGG | 0.649340 | 4_3:+45254112 | Msa0642940:CDS |
TCTTCAAAATCAATTCAACA+TGG | 0.652833 | 4_3:+45250932 | Msa0642940:exon |
TTCACCCTTGGAATTGACTG+AGG | 0.656324 | 4_3:+45252731 | Msa0642940:CDS |
GATGCGTTGATCAATAATGC+CGG | 0.659297 | 4_3:+45251233 | Msa0642940:CDS |
ACAGTGCCATTAAGAGAATG+GGG | 0.679803 | 4_3:+45254202 | Msa0642940:CDS |
AATTATATATAAGAGCTCAA+CGG | 0.689781 | 4_3:+45254602 | Msa0642940:three_prime_UTR |
AGGTGTCAATATGCTCACAA+AGG | 0.699533 | 4_3:+45252929 | Msa0642940:CDS |
GGTGATGGCATTGGAATTGG+GGG | 0.700914 | 4_3:+45254078 | Msa0642940:intron |
ATGGGAAATGGGAAATTTCG+GGG | 0.745257 | 4_3:-45250846 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATAATTTTTTAAAATATA+AGG | + | chr4_3:45252503-45252522 | Msa0642940:intron | 0.0% |
!!! | AAAACTAATACTATTTTTTA+AGG | - | chr4_3:45251898-45251917 | None:intergenic | 10.0% |
!!! | ATTATAGTAGTATATATTTT+TGG | - | chr4_3:45252285-45252304 | None:intergenic | 10.0% |
!! | AATATTCATCAATTAAAATA+GGG | + | chr4_3:45253794-45253813 | Msa0642940:intron | 10.0% |
!!! | TTATAAATTTTATGTAGAAA+AGG | + | chr4_3:45253872-45253891 | Msa0642940:intron | 10.0% |
!! | GTCTAATACTTATAATATAA+GGG | - | chr4_3:45252051-45252070 | None:intergenic | 15.0% |
!! | AGTCTAATACTTATAATATA+AGG | - | chr4_3:45252052-45252071 | None:intergenic | 15.0% |
!! | TGTATGAAAAAAATATTGTA+AGG | + | chr4_3:45252361-45252380 | Msa0642940:intron | 15.0% |
!!! | TTAATCTTATACTTTTATCT+TGG | - | chr4_3:45252441-45252460 | None:intergenic | 15.0% |
!!! | TTAATAATTTTAAGTGTATG+TGG | - | chr4_3:45252661-45252680 | None:intergenic | 15.0% |
!! | ACAAAGATAAAATTGAATAT+AGG | - | chr4_3:45252991-45253010 | None:intergenic | 15.0% |
!! | TTAAATTAAACATTAATCCA+AGG | + | chr4_3:45253171-45253190 | Msa0642940:intron | 15.0% |
!! | TTTGAATCATAACAAAAATA+TGG | + | chr4_3:45253274-45253293 | Msa0642940:intron | 15.0% |
!! | GAATATTCATCAATTAAAAT+AGG | + | chr4_3:45253793-45253812 | Msa0642940:intron | 15.0% |
!!! | TTTTTGTAATAAAAATTGAC+AGG | + | chr4_3:45254057-45254076 | Msa0642940:intron | 15.0% |
!! | TTATGATGATTTATGGAAAT+GGG | - | chr4_3:45250867-45250886 | None:intergenic | 20.0% |
!! | TTTATGATGATTTATGGAAA+TGG | - | chr4_3:45250868-45250887 | None:intergenic | 20.0% |
!! | ACTGATACATATAATTATAC+CGG | + | chr4_3:45251344-45251363 | Msa0642940:intron | 20.0% |
!!! | AAGGTATTAAAGTGAAATAT+TGG | - | chr4_3:45251879-45251898 | None:intergenic | 20.0% |
!!! | ATTTTAAACATTAGACACTT+TGG | + | chr4_3:45251993-45252012 | Msa0642940:intron | 20.0% |
!! | TAGCATGTATATTTACAAAA+AGG | + | chr4_3:45252091-45252110 | Msa0642940:intron | 20.0% |
!!! | GTGTTTAAAACAAACATAAA+TGG | + | chr4_3:45252768-45252787 | Msa0642940:CDS | 20.0% |
!! | TTGTGTAAATAACTTTGTAA+GGG | + | chr4_3:45253102-45253121 | Msa0642940:intron | 20.0% |
!! | AGTAGTAGTATTAGAATAAA+GGG | - | chr4_3:45253389-45253408 | None:intergenic | 20.0% |
!!! | TAAGCAAAAGTTGATTTTTT+AGG | - | chr4_3:45253514-45253533 | None:intergenic | 20.0% |
!!! | CTTTTGCTTATAATAATGAT+CGG | + | chr4_3:45253524-45253543 | Msa0642940:intron | 20.0% |
!! | AATTTCTTGATAAGACAAAA+AGG | - | chr4_3:45253575-45253594 | None:intergenic | 20.0% |
!!! | TTTTTGTCTTATCAAGAAAT+TGG | + | chr4_3:45253574-45253593 | Msa0642940:intron | 20.0% |
!!! | TTTCACTTTCTCTATTTTAT+TGG | - | chr4_3:45253711-45253730 | None:intergenic | 20.0% |
!!! | TTCTGACACATTATTTTAAT+GGG | - | chr4_3:45253997-45254016 | None:intergenic | 20.0% |
!! | AAAATTTGATGAAGAAAGAT+TGG | + | chr4_3:45254158-45254177 | Msa0642940:CDS | 20.0% |
!! | ATTACAATTGATGTATAAGA+TGG | + | chr4_3:45254507-45254526 | Msa0642940:three_prime_UTR | 20.0% |
!! | TTACAATTGATGTATAAGAT+GGG | + | chr4_3:45254508-45254527 | Msa0642940:three_prime_UTR | 20.0% |
!!! | TGAGAATTTTTGAAAAGAAA+TGG | + | chr4_3:45254541-45254560 | Msa0642940:three_prime_UTR | 20.0% |
! | TGAATTTACTTACAACTTCA+TGG | + | chr4_3:45250777-45250796 | Msa0642940:five_prime_UTR | 25.0% |
! | AATGAATGAATGTTGAGAAT+GGG | - | chr4_3:45250893-45250912 | None:intergenic | 25.0% |
! | AAATGAATGAATGTTGAGAA+TGG | - | chr4_3:45250894-45250913 | None:intergenic | 25.0% |
! | TCTTCAAAATCAATTCAACA+TGG | + | chr4_3:45250932-45250951 | Msa0642940:exon | 25.0% |
! | TTCGAGAAAATCATATAATC+CGG | - | chr4_3:45251366-45251385 | None:intergenic | 25.0% |
!!! | TTGATTCAAAAAGTTGATGA+TGG | + | chr4_3:45251583-45251602 | Msa0642940:intron | 25.0% |
! | ATGATTTATTGTTTGTGTGA+AGG | + | chr4_3:45251635-45251654 | Msa0642940:intron | 25.0% |
! | TATACATGCTAGTAACTTAA+GGG | - | chr4_3:45252082-45252101 | None:intergenic | 25.0% |
! | ATATACATGCTAGTAACTTA+AGG | - | chr4_3:45252083-45252102 | None:intergenic | 25.0% |
! | TTGATCCCATTAGAAAATAT+TGG | - | chr4_3:45252159-45252178 | None:intergenic | 25.0% |
! | AAACAAACATAAATGGTACA+TGG | + | chr4_3:45252775-45252794 | Msa0642940:CDS | 25.0% |
! | CTTGTGTAAATAACTTTGTA+AGG | + | chr4_3:45253101-45253120 | Msa0642940:intron | 25.0% |
! | AGAATAGAGAATGTGATAAA+TGG | + | chr4_3:45253130-45253149 | Msa0642940:intron | 25.0% |
! | TACACTTGTCATATCATAAT+TGG | - | chr4_3:45253241-45253260 | None:intergenic | 25.0% |
! | TACGGTCTGAAAAAAAATTA+TGG | - | chr4_3:45253339-45253358 | None:intergenic | 25.0% |
! | GAGTAGTAGTATTAGAATAA+AGG | - | chr4_3:45253390-45253409 | None:intergenic | 25.0% |
! | ATAAATGAAGAGAGAGAATA+AGG | - | chr4_3:45253669-45253688 | None:intergenic | 25.0% |
!!! | TTAAAAAGGAAGTTTTGTCT+TGG | - | chr4_3:45253936-45253955 | None:intergenic | 25.0% |
! | CATTGAAAGGAAGTTTAAAA+AGG | - | chr4_3:45253950-45253969 | None:intergenic | 25.0% |
!!! | GTTCTGACACATTATTTTAA+TGG | - | chr4_3:45253998-45254017 | None:intergenic | 25.0% |
! | TAATAAAAATTGACAGGTGA+TGG | + | chr4_3:45254063-45254082 | Msa0642940:intron | 25.0% |
! | AATATATTTATTGCTGATGC+TGG | + | chr4_3:45254295-45254314 | Msa0642940:CDS | 25.0% |
! | ATTCATAGTGAGGAATAAAT+AGG | - | chr4_3:45254340-45254359 | None:intergenic | 25.0% |
! | AAAATATGATGAGTGAAACT+TGG | + | chr4_3:45254389-45254408 | Msa0642940:three_prime_UTR | 25.0% |
!!! | GTAGGATCAATTTTTGAGTA+AGG | + | chr4_3:45250647-45250666 | Msa0642940:five_prime_UTR | 30.0% |
GTATGTCTTAAAAGACAAGA+AGG | - | chr4_3:45250749-45250768 | None:intergenic | 30.0% | |
AAATGGGAAATGGGAAATTT+CGG | - | chr4_3:45250851-45250870 | None:intergenic | 30.0% | |
GATTTATGGAAATGGGAAAT+GGG | - | chr4_3:45250860-45250879 | None:intergenic | 30.0% | |
TGATTTATGGAAATGGGAAA+TGG | - | chr4_3:45250861-45250880 | None:intergenic | 30.0% | |
!! | TGGGGTTTTATGATGATTTA+TGG | - | chr4_3:45250874-45250893 | None:intergenic | 30.0% |
ATGAATGAATGTTGAGAATG+GGG | - | chr4_3:45250892-45250911 | None:intergenic | 30.0% | |
TCATTGTGTGATGAAATCAA+TGG | + | chr4_3:45251104-45251123 | Msa0642940:CDS | 30.0% | |
! | TATAGAGAAGTATGTACAGA+AGG | + | chr4_3:45251187-45251206 | Msa0642940:CDS | 30.0% |
ATTCAAATTACCTCTAACAC+CGG | - | chr4_3:45251255-45251274 | None:intergenic | 30.0% | |
ACGTTTAAATCTACCAAGTA+CGG | + | chr4_3:45251279-45251298 | Msa0642940:intron | 30.0% | |
! | ATCGTTCTTTATTTGAGATG+TGG | + | chr4_3:45251659-45251678 | Msa0642940:intron | 30.0% |
GTCTAACATTTACAACTTGA+TGG | + | chr4_3:45252122-45252141 | Msa0642940:intron | 30.0% | |
TTACAACTTGATGGAACTAA+AGG | + | chr4_3:45252131-45252150 | Msa0642940:intron | 30.0% | |
TACAACTTGATGGAACTAAA+GGG | + | chr4_3:45252132-45252151 | Msa0642940:intron | 30.0% | |
! | AAGGGTCCAATATTTTCTAA+TGG | + | chr4_3:45252150-45252169 | Msa0642940:intron | 30.0% |
! | AGGGTCCAATATTTTCTAAT+GGG | + | chr4_3:45252151-45252170 | Msa0642940:intron | 30.0% |
AGCATAAAATATGTCGAGAA+AGG | - | chr4_3:45252615-45252634 | None:intergenic | 30.0% | |
! | TCTCGACATATTTTATGCTT+TGG | + | chr4_3:45252616-45252635 | Msa0642940:intron | 30.0% |
!! | TTTTAAGTGTATGTGGTCAA+AGG | - | chr4_3:45252654-45252673 | None:intergenic | 30.0% |
GATTTATTGTTGTGTTGTGT+AGG | + | chr4_3:45252699-45252718 | Msa0642940:intron | 30.0% | |
AAACATAAATGGTACATGGT+TGG | + | chr4_3:45252779-45252798 | Msa0642940:CDS | 30.0% | |
ATCAATATCTCTTCAATTGC+TGG | + | chr4_3:45252855-45252874 | Msa0642940:CDS | 30.0% | |
!! | GAATTTGTTTTCATGTGACT+TGG | + | chr4_3:45253016-45253035 | Msa0642940:intron | 30.0% |
!!! | TCCTTGATTTTAGGATCATT+AGG | + | chr4_3:45253195-45253214 | Msa0642940:intron | 30.0% |
!! | TTTTTCAGACCGTATATATG+CGG | + | chr4_3:45253345-45253364 | Msa0642940:intron | 30.0% |
CTAAAGTTTCCGCATATATA+CGG | - | chr4_3:45253357-45253376 | None:intergenic | 30.0% | |
TATATATGCGGAAACTTTAG+TGG | + | chr4_3:45253357-45253376 | Msa0642940:intron | 30.0% | |
! | CTTTTGCTTATAATAGTGAC+TGG | - | chr4_3:45253416-45253435 | None:intergenic | 30.0% |
TGCTTATAATAATGATCGGA+TGG | + | chr4_3:45253528-45253547 | Msa0642940:intron | 30.0% | |
!! | GATGGAGTATTTGTTTTCTT+TGG | + | chr4_3:45253546-45253565 | Msa0642940:intron | 30.0% |
TGGTAAAATCAAGAAGTTCA+CGG | + | chr4_3:45253594-45253613 | Msa0642940:intron | 30.0% | |
ATTTCAGATTTGAAAAGTCC+TGG | - | chr4_3:45254133-45254152 | None:intergenic | 30.0% | |
TGATTCTTCTGAATATGTGA+CGG | + | chr4_3:45254270-45254289 | Msa0642940:CDS | 30.0% | |
CATATCAAGTATTCATAGTG+AGG | - | chr4_3:45254350-45254369 | None:intergenic | 30.0% | |
TGATATGATACACTTTGCAA+TGG | + | chr4_3:45254363-45254382 | Msa0642940:three_prime_UTR | 30.0% | |
CGACAAATATCATGTTGTTG+AGG | - | chr4_3:45250690-45250709 | None:intergenic | 35.0% | |
!! | AAGGATGATTGATTTGGTGT+TGG | - | chr4_3:45250812-45250831 | None:intergenic | 35.0% |
AATGGGAAATGGGAAATTTC+GGG | - | chr4_3:45250850-45250869 | None:intergenic | 35.0% | |
GTGTGATGAAATCAATGGAA+AGG | + | chr4_3:45251109-45251128 | Msa0642940:CDS | 35.0% | |
TGATGAAATCAATGGAAAGG+AGG | + | chr4_3:45251112-45251131 | Msa0642940:CDS | 35.0% | |
GATGAAATCAATGGAAAGGA+GGG | + | chr4_3:45251113-45251132 | Msa0642940:CDS | 35.0% | |
TACAGTTATTAGACACGACA+TGG | - | chr4_3:45251416-45251435 | None:intergenic | 35.0% | |
AAGCGGTGCAATATTGAAAA+GGG | + | chr4_3:45251686-45251705 | Msa0642940:intron | 35.0% | |
! | GAGTTTTGCTACATATGTAG+CGG | - | chr4_3:45251821-45251840 | None:intergenic | 35.0% |
ATTGTGATTCCTTACGCTAT+CGG | + | chr4_3:45251918-45251937 | Msa0642940:intron | 35.0% | |
!! | AATGGGATCAAAAGCACTTA+TGG | + | chr4_3:45252168-45252187 | Msa0642940:intron | 35.0% |
!! | ATGGGATCAAAAGCACTTAT+GGG | + | chr4_3:45252169-45252188 | Msa0642940:intron | 35.0% |
ACTCAGAGATCAAAGTGAAA+CGG | + | chr4_3:45252214-45252233 | Msa0642940:intron | 35.0% | |
! | AGCACTTTTCTTCGAATGAT+TGG | + | chr4_3:45252307-45252326 | Msa0642940:intron | 35.0% |
TTGGATGATATAGCTTATGG+TGG | - | chr4_3:45252547-45252566 | None:intergenic | 35.0% | |
CACTTGGATGATATAGCTTA+TGG | - | chr4_3:45252550-45252569 | None:intergenic | 35.0% | |
! | ATTAGTCACTTTCAGTCACT+TGG | - | chr4_3:45252566-45252585 | None:intergenic | 35.0% |
AACTGCATATGCTTGTTCAA+AGG | + | chr4_3:45252905-45252924 | Msa0642940:CDS | 35.0% | |
GTCACATGATTGAAATGTCA+CGG | + | chr4_3:45253058-45253077 | Msa0642940:intron | 35.0% | |
TCACATGATTGAAATGTCAC+GGG | + | chr4_3:45253059-45253078 | Msa0642940:intron | 35.0% | |
!! | AATGTCACGGGTTAAAGTTT+TGG | + | chr4_3:45253071-45253090 | Msa0642940:intron | 35.0% |
! | ATCCAAGGTTCCTTGATTTT+AGG | + | chr4_3:45253186-45253205 | Msa0642940:intron | 35.0% |
ATCCTAAAATCAAGGAACCT+TGG | - | chr4_3:45253191-45253210 | None:intergenic | 35.0% | |
GCCTAATGATCCTAAAATCA+AGG | - | chr4_3:45253199-45253218 | None:intergenic | 35.0% | |
TGCTTATAATAGTGACTGGA+GGG | - | chr4_3:45253412-45253431 | None:intergenic | 35.0% | |
TTGCTTATAATAGTGACTGG+AGG | - | chr4_3:45253413-45253432 | None:intergenic | 35.0% | |
ACACATGGCAACAAGAATTA+AGG | - | chr4_3:45253620-45253639 | None:intergenic | 35.0% | |
ACTTCTTGATTCATCACACA+TGG | - | chr4_3:45253635-45253654 | None:intergenic | 35.0% | |
! | TTTATCCCGCTCTATTGTTT+TGG | + | chr4_3:45253684-45253703 | Msa0642940:intron | 35.0% |
ATTGGTCCAAAACAATAGAG+CGG | - | chr4_3:45253693-45253712 | None:intergenic | 35.0% | |
AACTTCCTTTCAATGTCTTC+AGG | + | chr4_3:45253955-45253974 | Msa0642940:intron | 35.0% | |
ATTGTCCTGAAGACATTGAA+AGG | - | chr4_3:45253963-45253982 | None:intergenic | 35.0% | |
TTTCAATGTCTTCAGGACAA+TGG | + | chr4_3:45253962-45253981 | Msa0642940:intron | 35.0% | |
AAGCAAAGACATACTGACAT+TGG | + | chr4_3:45254028-45254047 | Msa0642940:intron | 35.0% | |
AAAGACATACTGACATTGGT+TGG | + | chr4_3:45254032-45254051 | Msa0642940:intron | 35.0% | |
AGAGTGAATTCAATATCACC+AGG | + | chr4_3:45254112-45254131 | Msa0642940:CDS | 35.0% | |
! | AACAGTGCCATTAAGAGAAT+GGG | + | chr4_3:45254201-45254220 | Msa0642940:CDS | 35.0% |
GATTCTTCTGAATATGTGAC+GGG | + | chr4_3:45254271-45254290 | Msa0642940:CDS | 35.0% | |
ATAAATAGGAAAGCCTGGTA+AGG | - | chr4_3:45254326-45254345 | None:intergenic | 35.0% | |
CATGAGTTAAGATGTTCTCA+TGG | + | chr4_3:45254433-45254452 | Msa0642940:three_prime_UTR | 35.0% | |
TCTCATGGTTACTAATCTAC+AGG | + | chr4_3:45254448-45254467 | Msa0642940:three_prime_UTR | 35.0% | |
!! | GATGATTGATTTGGTGTTGG+TGG | - | chr4_3:45250809-45250828 | None:intergenic | 40.0% |
GTGGTGAAGGATGATTGATT+TGG | - | chr4_3:45250818-45250837 | None:intergenic | 40.0% | |
AAATTTCGGGGAATGGAATG+TGG | - | chr4_3:45250837-45250856 | None:intergenic | 40.0% | |
AAATGGGAAATTTCGGGGAA+TGG | - | chr4_3:45250844-45250863 | None:intergenic | 40.0% | |
ATGGGAAATGGGAAATTTCG+GGG | - | chr4_3:45250849-45250868 | None:intergenic | 40.0% | |
! | GATGCGTTGATCAATAATGC+CGG | + | chr4_3:45251233-45251252 | Msa0642940:CDS | 40.0% |
! | ATCAATAATGCCGGTGTTAG+AGG | + | chr4_3:45251242-45251261 | Msa0642940:CDS | 40.0% |
!! | ATCTAAAGAGTGTCCGTACT+TGG | - | chr4_3:45251295-45251314 | None:intergenic | 40.0% |
! | ATTTGAGATGTGGTACCAAG+CGG | + | chr4_3:45251669-45251688 | Msa0642940:intron | 40.0% |
! | CTTTTCAATATTGCACCGCT+TGG | - | chr4_3:45251687-45251706 | None:intergenic | 40.0% |
CAAGCGGTGCAATATTGAAA+AGG | + | chr4_3:45251685-45251704 | Msa0642940:intron | 40.0% | |
!! | CTATCGGTGTTGAACACTTT+GGG | + | chr4_3:45251934-45251953 | Msa0642940:intron | 40.0% |
AACTCATGCGTGATTCAAAG+AGG | + | chr4_3:45252820-45252839 | Msa0642940:CDS | 40.0% | |
ATGCGTGATTCAAAGAGGAA+AGG | + | chr4_3:45252825-45252844 | Msa0642940:CDS | 40.0% | |
AGGTGTCAATATGCTCACAA+AGG | + | chr4_3:45252929-45252948 | Msa0642940:CDS | 40.0% | |
TCATGTGACGATAACTTTCC+AGG | - | chr4_3:45253047-45253066 | None:intergenic | 40.0% | |
TTGGTCCAAAACAATAGAGC+GGG | - | chr4_3:45253692-45253711 | None:intergenic | 40.0% | |
ATTCTTAACCATTGCCCTGA+GGG | - | chr4_3:45253835-45253854 | None:intergenic | 40.0% | |
AATTCTTAACCATTGCCCTG+AGG | - | chr4_3:45253836-45253855 | None:intergenic | 40.0% | |
! | AAATTGACAGGTGATGGCAT+TGG | + | chr4_3:45254069-45254088 | Msa0642940:intron | 40.0% |
TCTTAATGGCACTGTTCTCA+TGG | - | chr4_3:45254197-45254216 | None:intergenic | 40.0% | |
! | GAACAGTGCCATTAAGAGAA+TGG | + | chr4_3:45254200-45254219 | Msa0642940:CDS | 40.0% |
! | ACAGTGCCATTAAGAGAATG+GGG | + | chr4_3:45254202-45254221 | Msa0642940:CDS | 40.0% |
CGAGCAATTGATGTTAATGC+TGG | - | chr4_3:45254238-45254257 | None:intergenic | 40.0% | |
GAGGAATAAATAGGAAAGCC+TGG | - | chr4_3:45254331-45254350 | None:intergenic | 40.0% | |
TGGCAAAGCAACTAGAACCA+TGG | + | chr4_3:45250952-45250971 | Msa0642940:CDS | 45.0% | |
ACGTGATTTCTGCCTTGATC+TGG | + | chr4_3:45251028-45251047 | Msa0642940:CDS | 45.0% | |
! | TGCTGGATGTTTTGTGATCG+CGG | + | chr4_3:45251055-45251074 | Msa0642940:CDS | 45.0% |
! | AGAAGTATGTACAGAAGGCG+TGG | + | chr4_3:45251192-45251211 | Msa0642940:CDS | 45.0% |
! | GAAGTATGTACAGAAGGCGT+GGG | + | chr4_3:45251193-45251212 | Msa0642940:CDS | 45.0% |
TGTTCAACACCGATAGCGTA+AGG | - | chr4_3:45251930-45251949 | None:intergenic | 45.0% | |
!! | GCTATCGGTGTTGAACACTT+TGG | + | chr4_3:45251933-45251952 | Msa0642940:intron | 45.0% |
AGGAAATGTGAGTTCACCCT+TGG | + | chr4_3:45252719-45252738 | Msa0642940:intron | 45.0% | |
TTCACCCTTGGAATTGACTG+AGG | + | chr4_3:45252731-45252750 | Msa0642940:CDS | 45.0% | |
TCCTCCTCAGTCAATTCCAA+GGG | - | chr4_3:45252738-45252757 | None:intergenic | 45.0% | |
TTCCTCCTCAGTCAATTCCA+AGG | - | chr4_3:45252739-45252758 | None:intergenic | 45.0% | |
TGGAATTGACTGAGGAGGAA+TGG | + | chr4_3:45252739-45252758 | Msa0642940:CDS | 45.0% | |
! | TTCAATTGCTGGCCTAGAGA+GGG | + | chr4_3:45252866-45252885 | Msa0642940:CDS | 45.0% |
ACAAGCATATGCAGTTCCAC+CGG | - | chr4_3:45252901-45252920 | None:intergenic | 45.0% | |
GCATATGCTTGTTCAAAGGC+AGG | + | chr4_3:45252909-45252928 | Msa0642940:CDS | 45.0% | |
! | ACAGGTGATGGCATTGGAAT+TGG | + | chr4_3:45254075-45254094 | Msa0642940:intron | 45.0% |
! | CAGGTGATGGCATTGGAATT+GGG | + | chr4_3:45254076-45254095 | Msa0642940:intron | 45.0% |
! | AGGTGATGGCATTGGAATTG+GGG | + | chr4_3:45254077-45254096 | Msa0642940:intron | 45.0% |
! | GAAGTGCCCCATTCTCTTAA+TGG | - | chr4_3:45254211-45254230 | None:intergenic | 45.0% |
GGTGACAAGGACAACTTTGC+CGG | - | chr4_3:45250988-45251007 | None:intergenic | 50.0% | |
GGCAAAGTTGTCCTTGTCAC+CGG | + | chr4_3:45250987-45251006 | Msa0642940:CDS | 50.0% | |
ACCCTTGGAATTGACTGAGG+AGG | + | chr4_3:45252734-45252753 | Msa0642940:CDS | 50.0% | |
! | CTTCAATTGCTGGCCTAGAG+AGG | + | chr4_3:45252865-45252884 | Msa0642940:CDS | 50.0% |
! | TCAATTGCTGGCCTAGAGAG+GGG | + | chr4_3:45252867-45252886 | Msa0642940:CDS | 50.0% |
CAAGCATATGCAGTTCCACC+GGG | - | chr4_3:45252900-45252919 | None:intergenic | 50.0% | |
!! | TCATGTGACTTGGTGCAACC+TGG | + | chr4_3:45253026-45253045 | Msa0642940:intron | 50.0% |
TCTTGCTAACCAATGCCCTC+AGG | + | chr4_3:45253817-45253836 | Msa0642940:intron | 50.0% | |
CTTGCTAACCAATGCCCTCA+GGG | + | chr4_3:45253818-45253837 | Msa0642940:intron | 50.0% | |
! | GGTGATGGCATTGGAATTGG+GGG | + | chr4_3:45254078-45254097 | Msa0642940:intron | 50.0% |
CGGGGAATGGAATGTGGTGA+AGG | - | chr4_3:45250831-45250850 | None:intergenic | 55.0% | |
ATCCAGCACGAGCCAGATCA+AGG | - | chr4_3:45251043-45251062 | None:intergenic | 55.0% | |
AGTTGCGGTGGAGCTTGATG+TGG | + | chr4_3:45251148-45251167 | Msa0642940:CDS | 55.0% | |
! | GTATGTACAGAAGGCGTGGG+AGG | + | chr4_3:45251196-45251215 | Msa0642940:CDS | 55.0% |
! | CAATTGCTGGCCTAGAGAGG+GGG | + | chr4_3:45252868-45252887 | Msa0642940:CDS | 55.0% |
AACCAATGCCCTCAGGGCAA+TGG | + | chr4_3:45253824-45253843 | Msa0642940:intron | 55.0% | |
! | AACCATTGCCCTGAGGGCAT+TGG | - | chr4_3:45253829-45253848 | None:intergenic | 55.0% |
!! | GATGCTGGTGCTACCTTACC+AGG | + | chr4_3:45254310-45254329 | Msa0642940:CDS | 55.0% |
CAAGGACAACTTTGCCGGCG+AGG | - | chr4_3:45250983-45251002 | None:intergenic | 60.0% | |
TTGTCACCGGCGCATCAGCA+GGG | + | chr4_3:45251000-45251019 | Msa0642940:CDS | 60.0% | |
! | TGCCTTGATCTGGCTCGTGC+TGG | + | chr4_3:45251038-45251057 | Msa0642940:CDS | 60.0% |
GGGAAGTCTCCGTGCAGTTG+CGG | + | chr4_3:45251133-45251152 | Msa0642940:CDS | 60.0% | |
AAGTCTCCGTGCAGTTGCGG+TGG | + | chr4_3:45251136-45251155 | Msa0642940:CDS | 60.0% | |
CAAGCTCCACCGCAACTGCA+CGG | - | chr4_3:45251145-45251164 | None:intergenic | 60.0% | |
TGCGGTGGAGCTTGATGTGG+CGG | + | chr4_3:45251151-45251170 | Msa0642940:CDS | 60.0% | |
GAGCTTGATGTGGCGGCTGA+TGG | + | chr4_3:45251158-45251177 | Msa0642940:CDS | 60.0% | |
CTTGATGTGGCGGCTGATGG+TGG | + | chr4_3:45251161-45251180 | Msa0642940:CDS | 60.0% | |
!! | CAGAAGGCGTGGGAGGCTTT+TGG | + | chr4_3:45251203-45251222 | Msa0642940:CDS | 60.0% |
CTAGAGAGGGGGCAATTGCC+CGG | + | chr4_3:45252879-45252898 | Msa0642940:CDS | 60.0% | |
GAACCATGGCACGACCTCGC+CGG | + | chr4_3:45250966-45250985 | Msa0642940:CDS | 65.0% | |
! | CTGCTGATGCGCCGGTGACA+AGG | - | chr4_3:45251001-45251020 | None:intergenic | 65.0% |
CTTGTCACCGGCGCATCAGC+AGG | + | chr4_3:45250999-45251018 | Msa0642940:CDS | 65.0% | |
ACCGGCGCATCAGCAGGGAT+CGG | + | chr4_3:45251005-45251024 | Msa0642940:CDS | 65.0% | |
TCCGATCCCTGCTGATGCGC+CGG | - | chr4_3:45251009-45251028 | None:intergenic | 65.0% | |
CGGGCAATTGCCCCCTCTCT+AGG | - | chr4_3:45252881-45252900 | None:intergenic | 65.0% | |
TTGCCGGCGAGGTCGTGCCA+TGG | - | chr4_3:45250972-45250991 | None:intergenic | 70.0% | |
GAGAGGGGGCAATTGCCCGG+TGG | + | chr4_3:45252882-45252901 | Msa0642940:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_3 | gene | 45250647 | 45254623 | 45250647 | ID=Msa0642940;Name=Msa0642940 |
chr4_3 | mRNA | 45250647 | 45254623 | 45250647 | ID=Msa0642940-mRNA-1;Parent=Msa0642940;Name=Msa0642940-mRNA-1;_AED=0.04;_eAED=0.04;_QI=304|1|1|1|1|1|3|266|273 |
chr4_3 | exon | 45250647 | 45251263 | 45250647 | ID=Msa0642940-mRNA-1:exon:10387;Parent=Msa0642940-mRNA-1 |
chr4_3 | exon | 45252721 | 45252950 | 45252721 | ID=Msa0642940-mRNA-1:exon:10388;Parent=Msa0642940-mRNA-1 |
chr4_3 | exon | 45254079 | 45254623 | 45254079 | ID=Msa0642940-mRNA-1:exon:10389;Parent=Msa0642940-mRNA-1 |
chr4_3 | five_prime_UTR | 45250647 | 45250950 | 45250647 | ID=Msa0642940-mRNA-1:five_prime_utr;Parent=Msa0642940-mRNA-1 |
chr4_3 | CDS | 45250951 | 45251263 | 45250951 | ID=Msa0642940-mRNA-1:cds;Parent=Msa0642940-mRNA-1 |
chr4_3 | CDS | 45252721 | 45252950 | 45252721 | ID=Msa0642940-mRNA-1:cds;Parent=Msa0642940-mRNA-1 |
chr4_3 | CDS | 45254079 | 45254357 | 45254079 | ID=Msa0642940-mRNA-1:cds;Parent=Msa0642940-mRNA-1 |
chr4_3 | three_prime_UTR | 45254358 | 45254623 | 45254358 | ID=Msa0642940-mRNA-1:three_prime_utr;Parent=Msa0642940-mRNA-1 |
Gene Sequence |
Protein sequence |