AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0642940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0642940 MtrunA17_Chr4g0028921 96.703 273 9 0 1 273 1 273 0.0 543
Msa0642940 MtrunA17_Chr4g0028911 94.872 273 14 0 1 273 1 273 0.0 533
Msa0642940 MtrunA17_Chr1g0171831 70.472 254 70 1 4 252 7 260 5.43e-130 369
Msa0642940 MtrunA17_Chr3g0122901 31.538 260 168 6 6 264 70 320 2.10e-31 118
Msa0642940 MtrunA17_Chr1g0146811 30.952 252 172 2 14 264 6 256 7.79e-30 113
Msa0642940 MtrunA17_Chr3g0112171 30.769 260 167 9 11 267 15 264 1.25e-27 107
Msa0642940 MtrunA17_Chr4g0025971 31.852 270 158 8 11 270 14 267 7.50e-27 105
Msa0642940 MtrunA17_Chr4g0026001 32.700 263 165 7 11 270 14 267 3.18e-26 103
Msa0642940 MtrunA17_Chr3g0112151 30.268 261 169 9 10 267 85 335 5.16e-26 104
Msa0642940 MtrunA17_Chr3g0112141 30.385 260 168 10 11 267 17 266 4.61e-25 100
Msa0642940 MtrunA17_Chr4g0025981 30.534 262 170 7 13 271 43 295 5.19e-24 99.0
Msa0642940 MtrunA17_Chr6g0459261 27.519 258 170 6 11 261 25 272 6.16e-24 97.8
Msa0642940 MtrunA17_Chr3g0112261 29.119 261 172 9 10 267 18 268 8.27e-24 97.4
Msa0642940 MtrunA17_Chr2g0324021 30.370 270 160 6 1 261 1 251 1.46e-23 96.7
Msa0642940 MtrunA17_Chr4g0044131 31.439 264 164 7 1 261 4 253 1.54e-23 96.7
Msa0642940 MtrunA17_Chr7g0270441 29.889 271 146 8 11 261 6 252 1.55e-23 96.3
Msa0642940 MtrunA17_Chr3g0112271 31.034 261 167 11 10 267 16 266 2.12e-23 96.3
Msa0642940 MtrunA17_Chr7g0239491 29.297 256 171 6 11 263 15 263 8.68e-23 94.4
Msa0642940 MtrunA17_Chr7g0270451 31.783 258 157 7 11 261 6 251 9.11e-23 94.4
Msa0642940 MtrunA17_Chr4g0032141 28.846 260 172 9 11 267 56 305 6.32e-22 92.8
Msa0642940 MtrunA17_Chr6g0459281 28.627 255 155 8 11 253 13 252 7.36e-22 92.0
Msa0642940 MtrunA17_Chr7g0239481 28.682 258 173 6 11 264 15 265 1.81e-21 90.9
Msa0642940 MtrunA17_Chr6g0459331 26.641 259 171 6 11 261 13 260 1.01e-20 89.0
Msa0642940 MtrunA17_Chr1g0191751 27.509 269 177 6 6 266 96 354 1.98e-20 89.4
Msa0642940 MtrunA17_Chr7g0259531 29.167 264 178 7 1 261 1 258 6.33e-20 86.7
Msa0642940 MtrunA17_Chr7g0239511 29.344 259 170 8 11 264 16 266 7.12e-20 86.7
Msa0642940 MtrunA17_Chr3g0124471 32.990 194 115 7 15 206 30 210 1.07e-19 86.7
Msa0642940 MtrunA17_Chr7g0259521 29.545 264 162 11 7 261 5 253 1.66e-19 85.5
Msa0642940 MtrunA17_Chr7g0252031 29.389 262 167 7 11 263 35 287 1.67e-19 86.3
Msa0642940 MtrunA17_Chr6g0459351 27.200 250 165 7 11 253 13 252 1.33e-18 83.2
Msa0642940 MtrunA17_Chr4g0074511 28.519 270 162 11 7 261 36 289 1.60e-18 83.2
Msa0642940 MtrunA17_Chr7g0239501 29.070 258 172 8 11 264 16 266 2.39e-18 82.4
Msa0642940 MtrunA17_Chr7g0244061 29.455 275 163 8 11 263 29 294 2.45e-18 82.8
Msa0642940 MtrunA17_Chr7g0267001 30.418 263 150 8 1 261 4 235 5.66e-18 81.3
Msa0642940 MtrunA17_Chr7g0267011 32.461 191 120 5 11 200 8 190 6.94e-18 79.7
Msa0642940 MtrunA17_Chr7g0239451 26.459 257 178 6 11 263 16 265 1.35e-17 80.1
Msa0642940 MtrunA17_Chr7g0272961 23.985 271 180 7 6 264 35 291 1.48e-17 80.5
Msa0642940 MtrunA17_Chr4g0040371 29.412 272 171 7 2 263 11 271 3.74e-17 79.3
Msa0642940 MtrunA17_Chr0c30g0494101 28.519 270 160 11 7 261 36 287 7.45e-17 78.6
Msa0642940 MtrunA17_Chr6g0459301 26.154 260 171 7 11 261 14 261 8.39e-17 78.2
Msa0642940 MtrunA17_Chr3g0124481 39.130 138 77 5 70 206 64 195 1.08e-16 78.2
Msa0642940 MtrunA17_Chr3g0084871 29.927 274 160 8 7 263 12 270 1.24e-16 77.8
Msa0642940 MtrunA17_Chr6g0459271 25.591 254 180 5 11 261 13 260 1.38e-16 77.4
Msa0642940 MtrunA17_Chr7g0249571 31.527 203 131 6 1 200 28 225 1.96e-16 77.8
Msa0642940 MtrunA17_Chr7g0266981 29.630 270 167 9 11 270 13 269 2.02e-16 77.0
Msa0642940 MtrunA17_Chr7g0268591 28.736 261 169 8 11 263 33 284 3.20e-16 77.0
Msa0642940 MtrunA17_Chr4g0075531 27.757 263 168 9 5 261 1 247 3.54e-16 76.3
Msa0642940 MtrunA17_Chr8g0357481 28.571 259 169 8 11 261 14 264 7.23e-16 75.9
Msa0642940 MtrunA17_Chr3g0123251 30.000 190 126 4 13 199 53 238 9.24e-16 75.9
Msa0642940 MtrunA17_Chr4g0044111 29.259 270 168 9 11 270 13 269 1.08e-15 75.1
Msa0642940 MtrunA17_Chr8g0355281 29.231 195 132 4 16 206 74 266 1.13e-15 75.9
Msa0642940 MtrunA17_Chr7g0266891 28.938 273 171 9 8 270 4 263 4.96e-15 73.2
Msa0642940 MtrunA17_Chr8g0386201 28.500 200 136 5 9 208 43 235 5.96e-15 73.9
Msa0642940 MtrunA17_Chr4g0054341 29.469 207 131 7 14 215 5 201 6.33e-15 73.2
Msa0642940 MtrunA17_Chr6g0485711 25.000 216 147 4 5 206 172 386 2.49e-14 72.4
Msa0642940 MtrunA17_Chr8g0381191 27.461 193 127 4 13 199 47 232 3.39e-14 71.2
Msa0642940 MtrunA17_Chr4g0032181 25.907 193 138 4 72 264 60 247 4.38e-14 70.1
Msa0642940 MtrunA17_Chr4g0045041 28.019 207 130 7 12 206 5 204 1.05e-12 67.8
Msa0642940 MtrunA17_Chr4g0076931 28.283 198 134 6 11 206 6 197 4.40e-12 64.3
Msa0642940 MtrunA17_Chr7g0262941 25.000 276 179 8 2 257 23 290 9.07e-12 64.3
Msa0642940 MtrunA17_Chr6g0463951 26.744 172 112 3 97 261 1 165 1.26e-11 62.0
Msa0642940 MtrunA17_Chr1g0182511 25.954 262 181 9 5 261 9 262 3.28e-11 62.4
Msa0642940 MtrunA17_Chr3g0123231 28.000 200 137 5 13 208 46 242 4.16e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0642940 AT3G55290.1 67.647 272 86 2 3 273 10 280 4.34e-137 388
Msa0642940 AT3G55290.2 67.647 272 86 2 3 273 9 279 4.73e-137 388
Msa0642940 AT3G55310.1 65.441 272 92 2 3 273 9 279 2.12e-133 379
Msa0642940 AT3G46170.1 65.441 272 92 2 3 273 18 288 9.07e-133 377
Msa0642940 AT1G62610.3 63.736 273 96 2 3 273 7 278 2.28e-130 371
Msa0642940 AT1G62610.1 63.736 273 96 2 3 273 6 277 2.35e-130 370
Msa0642940 AT1G62610.2 63.736 273 96 2 3 273 5 276 2.42e-130 370
Msa0642940 AT1G62610.4 63.736 273 96 2 3 273 11 282 2.77e-130 370
Msa0642940 AT1G63380.3 63.370 273 97 2 3 273 7 278 2.82e-130 370
Msa0642940 AT1G63380.1 63.370 273 97 2 3 273 9 280 3.49e-130 370
Msa0642940 AT1G63380.4 63.370 273 97 2 3 273 11 282 3.70e-130 370
Msa0642940 AT1G63380.2 63.370 273 97 2 3 273 14 285 4.89e-130 370
Msa0642940 AT2G17845.1 65.918 267 88 2 10 273 46 312 7.27e-128 366
Msa0642940 AT3G01980.1 33.071 254 167 3 13 264 5 257 6.38e-42 145
Msa0642940 AT3G01980.4 33.071 254 167 3 13 264 5 257 6.38e-42 145
Msa0642940 AT3G01980.5 34.562 217 140 2 50 264 17 233 1.02e-38 136
Msa0642940 AT3G01980.3 29.577 284 167 4 13 264 5 287 1.60e-35 129
Msa0642940 AT5G06060.1 33.716 261 160 9 10 267 8 258 4.64e-30 114
Msa0642940 AT1G24360.1 30.000 260 166 8 6 261 69 316 4.89e-28 110
Msa0642940 AT3G01980.6 33.143 175 114 3 13 185 5 178 3.14e-26 101
Msa0642940 AT2G29150.1 29.670 273 177 8 1 267 1 264 6.93e-24 97.8
Msa0642940 AT3G51680.1 31.022 274 158 8 11 263 32 295 1.29e-23 97.8
Msa0642940 AT3G26770.1 29.710 276 167 9 11 271 41 304 6.92e-23 95.9
Msa0642940 AT2G29260.1 29.811 265 172 11 6 267 64 317 6.92e-23 96.3
Msa0642940 AT5G18210.1 30.078 256 167 9 10 259 7 256 1.22e-22 94.4
Msa0642940 AT2G29370.1 28.727 275 182 8 1 269 1 267 3.62e-22 93.2
Msa0642940 AT4G13180.1 30.980 255 165 8 11 261 13 260 1.22e-21 91.7
Msa0642940 AT2G29350.1 28.295 258 175 7 11 267 15 263 1.30e-21 91.7
Msa0642940 AT3G26760.1 27.652 264 171 5 11 263 36 290 1.75e-20 89.4
Msa0642940 AT5G65205.1 35.052 194 111 7 15 206 10 190 1.76e-20 89.0
Msa0642940 AT1G07440.1 28.253 269 178 10 2 267 4 260 2.88e-20 87.8
Msa0642940 AT2G29360.1 29.197 274 178 10 1 267 1 265 4.41e-20 87.4
Msa0642940 AT1G54870.2 26.766 269 175 8 6 264 79 335 4.49e-20 88.6
Msa0642940 AT1G54870.1 26.766 269 175 8 6 264 77 333 4.70e-20 88.6
Msa0642940 AT5G10050.1 33.505 194 114 7 15 206 9 189 6.11e-20 87.4
Msa0642940 AT2G29290.2 26.357 258 183 5 10 267 6 256 6.94e-20 87.0
Msa0642940 AT3G47360.1 31.000 200 131 5 8 207 42 234 1.10e-19 87.0
Msa0642940 AT3G03980.1 27.881 269 172 10 6 261 9 268 2.33e-19 85.5
Msa0642940 AT5G18210.2 30.453 243 157 9 10 246 7 243 4.24e-19 85.1
Msa0642940 AT1G52340.1 29.167 264 170 6 11 263 18 275 9.33e-19 84.3
Msa0642940 AT1G67730.1 31.100 209 135 5 5 208 41 245 1.80e-18 84.0
Msa0642940 AT2G30670.1 26.744 258 180 7 11 267 7 256 2.19e-18 82.8
Msa0642940 AT1G49670.2 31.754 211 123 7 13 210 6 208 5.87e-18 84.0
Msa0642940 AT1G49670.1 31.884 207 120 7 17 210 10 208 6.78e-18 83.6
Msa0642940 AT3G47350.2 28.365 208 142 5 8 215 41 241 1.65e-17 81.3
Msa0642940 AT3G47350.1 28.365 208 142 5 8 215 41 241 1.77e-17 80.9
Msa0642940 AT1G10310.1 30.612 196 128 5 11 206 15 202 1.91e-17 79.7
Msa0642940 AT2G29310.1 28.517 263 169 10 11 267 7 256 5.18e-17 79.0
Msa0642940 AT5G50590.1 31.336 217 133 9 13 223 47 253 7.50e-17 79.0
Msa0642940 AT5G50690.1 31.336 217 133 9 13 223 47 253 7.50e-17 79.0
Msa0642940 AT2G47140.1 28.137 263 166 7 11 264 6 254 8.02e-17 78.2
Msa0642940 AT5G50590.2 31.795 195 120 7 13 204 47 231 8.93e-17 78.2
Msa0642940 AT5G50690.2 31.795 195 120 7 13 204 47 231 8.93e-17 78.2
Msa0642940 AT3G42960.1 31.086 267 151 9 14 263 11 261 9.49e-17 78.6
Msa0642940 AT1G24470.1 28.272 191 126 5 13 199 52 235 1.35e-16 78.6
Msa0642940 AT3G05260.1 25.283 265 177 9 6 261 32 284 2.72e-16 77.4
Msa0642940 AT2G29350.3 29.379 177 117 6 92 267 56 225 2.99e-16 76.3
Msa0642940 AT2G47130.1 26.923 260 172 5 11 264 6 253 4.34e-16 76.3
Msa0642940 AT5G50700.1 32.178 202 126 7 9 208 43 235 5.34e-16 77.4
Msa0642940 AT5G50600.1 32.178 202 126 7 9 208 43 235 5.34e-16 77.4
Msa0642940 AT2G29290.1 27.660 188 130 5 81 267 57 239 5.39e-16 75.9
Msa0642940 AT2G47120.2 25.681 257 178 6 11 264 7 253 1.43e-15 75.1
Msa0642940 AT2G47120.1 25.681 257 178 6 11 264 6 252 1.48e-15 74.7
Msa0642940 AT1G07450.1 26.154 260 178 9 11 267 8 256 4.70e-15 73.6
Msa0642940 AT5G61830.1 30.579 242 116 7 15 207 38 276 1.13e-14 73.2
Msa0642940 AT5G61830.2 30.579 242 116 7 15 207 38 276 1.13e-14 73.2
Msa0642940 AT2G29340.2 26.255 259 180 8 11 267 7 256 1.19e-14 72.4
Msa0642940 AT2G29340.1 26.255 259 180 8 11 267 7 256 1.83e-14 72.4
Msa0642940 AT3G29260.1 27.308 260 171 6 11 264 6 253 2.53e-14 71.2
Msa0642940 AT2G29320.1 26.923 260 178 9 11 267 13 263 2.85e-14 71.2
Msa0642940 AT3G29250.3 26.820 261 166 5 11 261 42 287 8.22e-14 70.5
Msa0642940 AT5G04900.1 27.692 195 134 5 16 206 82 273 8.23e-14 70.9
Msa0642940 AT3G04000.1 24.632 272 182 9 7 264 10 272 8.55e-14 70.1
Msa0642940 AT3G29250.1 26.820 261 166 5 11 261 44 289 8.62e-14 70.5
Msa0642940 AT3G29250.2 27.612 268 155 7 11 261 6 251 9.54e-14 69.7
Msa0642940 AT4G03140.1 28.244 262 169 8 11 263 78 329 2.58e-13 69.3
Msa0642940 AT3G03330.1 29.167 192 131 3 11 200 41 229 8.39e-13 67.8
Msa0642940 AT2G29350.2 27.805 205 140 5 10 213 14 211 1.11e-12 66.2
Msa0642940 AT2G29320.2 26.455 189 132 6 81 267 62 245 1.13e-12 66.6
Msa0642940 AT2G29330.1 24.615 260 183 8 11 267 7 256 1.87e-12 66.2
Msa0642940 AT5G50130.9 25.837 209 132 5 17 206 40 244 1.01e-11 63.9
Msa0642940 AT2G29300.1 25.385 260 182 8 11 267 7 257 1.30e-11 63.9
Msa0642940 AT2G37540.1 25.940 266 170 8 10 256 30 287 1.52e-11 63.9
Msa0642940 AT2G29310.3 29.952 207 127 9 11 211 7 201 1.88e-11 62.4
Msa0642940 AT5G50130.2 25.837 209 132 5 17 206 40 244 2.38e-11 63.5
Msa0642940 AT5G50130.6 25.837 209 132 5 17 206 7 211 3.68e-11 62.8
Msa0642940 AT5G50130.3 25.714 210 132 6 17 206 40 245 5.39e-11 62.0
Msa0642940 AT4G23430.1 28.302 212 123 6 10 200 26 229 5.58e-11 62.4
Msa0642940 AT5G50130.8 25.837 209 132 5 17 206 7 211 5.98e-11 62.4
Msa0642940 AT4G23430.2 27.830 212 126 6 10 200 26 231 7.06e-11 62.0

Find 103 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGTGCCCCATTCTCTTAA+TGG 0.197409 4_3:-45254208 None:intergenic
CAGAAGGCGTGGGAGGCTTT+TGG 0.287795 4_3:+45251203 Msa0642940:CDS
ATCAATATCTCTTCAATTGC+TGG 0.294772 4_3:+45252855 Msa0642940:CDS
ACAGGTGATGGCATTGGAAT+TGG 0.295752 4_3:+45254075 Msa0642940:intron
CAGGTGATGGCATTGGAATT+GGG 0.298175 4_3:+45254076 Msa0642940:intron
GTGTTTAAAACAAACATAAA+TGG 0.315012 4_3:+45252768 Msa0642940:CDS
AATGGGAAATGGGAAATTTC+GGG 0.316857 4_3:-45250847 None:intergenic
ATTCATAGTGAGGAATAAAT+AGG 0.326565 4_3:-45254337 None:intergenic
AAATGGGAAATGGGAAATTT+CGG 0.331675 4_3:-45250848 None:intergenic
TGAATTTACTTACAACTTCA+TGG 0.335158 4_3:+45250777 Msa0642940:five_prime_UTR
CTTGTCACCGGCGCATCAGC+AGG 0.346471 4_3:+45250999 Msa0642940:CDS
TTTATGATGATTTATGGAAA+TGG 0.358402 4_3:-45250865 None:intergenic
TTATGATGATTTATGGAAAT+GGG 0.360560 4_3:-45250864 None:intergenic
ACGTGATTTCTGCCTTGATC+TGG 0.366903 4_3:+45251028 Msa0642940:CDS
AAAATTTGATGAAGAAAGAT+TGG 0.382710 4_3:+45254158 Msa0642940:CDS
TGCCTTGATCTGGCTCGTGC+TGG 0.384037 4_3:+45251038 Msa0642940:CDS
ATCAATAATGCCGGTGTTAG+AGG 0.395800 4_3:+45251242 Msa0642940:CDS
GGTGACAAGGACAACTTTGC+CGG 0.399560 4_3:-45250985 None:intergenic
AACAGTGCCATTAAGAGAAT+GGG 0.402159 4_3:+45254201 Msa0642940:CDS
GATGCTGGTGCTACCTTACC+AGG 0.410122 4_3:+45254310 Msa0642940:CDS
TGATTTATGGAAATGGGAAA+TGG 0.420633 4_3:-45250858 None:intergenic
ATTACAATTGATGTATAAGA+TGG 0.423704 4_3:+45254507 Msa0642940:three_prime_UTR
GAGCTTGATGTGGCGGCTGA+TGG 0.434808 4_3:+45251158 Msa0642940:CDS
GATTTATGGAAATGGGAAAT+GGG 0.456699 4_3:-45250857 None:intergenic
CGAGCAATTGATGTTAATGC+TGG 0.468893 4_3:-45254235 None:intergenic
ATTTCAGATTTGAAAAGTCC+TGG 0.476294 4_3:-45254130 None:intergenic
AAATGGGAAATTTCGGGGAA+TGG 0.480008 4_3:-45250841 None:intergenic
TTCAATTGCTGGCCTAGAGA+GGG 0.482491 4_3:+45252866 Msa0642940:CDS
AATGAATGAATGTTGAGAAT+GGG 0.486284 4_3:-45250890 None:intergenic
TCTTAATGGCACTGTTCTCA+TGG 0.487179 4_3:-45254194 None:intergenic
GAACAGTGCCATTAAGAGAA+TGG 0.491704 4_3:+45254200 Msa0642940:CDS
CTTGATGTGGCGGCTGATGG+TGG 0.496263 4_3:+45251161 Msa0642940:CDS
GATGATTGATTTGGTGTTGG+TGG 0.496340 4_3:-45250806 None:intergenic
GTGGTGAAGGATGATTGATT+TGG 0.498870 4_3:-45250815 None:intergenic
AAGGATGATTGATTTGGTGT+TGG 0.500947 4_3:-45250809 None:intergenic
AATATATTTATTGCTGATGC+TGG 0.507646 4_3:+45254295 Msa0642940:CDS
GGCAAAGTTGTCCTTGTCAC+CGG 0.508416 4_3:+45250987 Msa0642940:CDS
TCCGATCCCTGCTGATGCGC+CGG 0.512043 4_3:-45251006 None:intergenic
TCTCATGGTTACTAATCTAC+AGG 0.517926 4_3:+45254448 Msa0642940:three_prime_UTR
GAGGAATAAATAGGAAAGCC+TGG 0.518416 4_3:-45254328 None:intergenic
AAAATATGATGAGTGAAACT+TGG 0.523161 4_3:+45254389 Msa0642940:three_prime_UTR
AGGTGATGGCATTGGAATTG+GGG 0.527360 4_3:+45254077 Msa0642940:intron
TGGAATTGACTGAGGAGGAA+TGG 0.528283 4_3:+45252739 Msa0642940:CDS
CTGCTGATGCGCCGGTGACA+AGG 0.532114 4_3:-45250998 None:intergenic
AGAAGTATGTACAGAAGGCG+TGG 0.537432 4_3:+45251192 Msa0642940:CDS
AAATGAATGAATGTTGAGAA+TGG 0.539277 4_3:-45250891 None:intergenic
TATAGAGAAGTATGTACAGA+AGG 0.544134 4_3:+45251187 Msa0642940:CDS
CTTCAATTGCTGGCCTAGAG+AGG 0.544592 4_3:+45252865 Msa0642940:CDS
CGACAAATATCATGTTGTTG+AGG 0.544808 4_3:-45250687 None:intergenic
GCATATGCTTGTTCAAAGGC+AGG 0.550266 4_3:+45252909 Msa0642940:CDS
AAGTCTCCGTGCAGTTGCGG+TGG 0.551617 4_3:+45251136 Msa0642940:CDS
AAACAAACATAAATGGTACA+TGG 0.552103 4_3:+45252775 Msa0642940:CDS
AGGAAATGTGAGTTCACCCT+TGG 0.553066 4_3:+45252719 Msa0642940:intron
GATTCTTCTGAATATGTGAC+GGG 0.553262 4_3:+45254271 Msa0642940:CDS
CGGGGAATGGAATGTGGTGA+AGG 0.556548 4_3:-45250828 None:intergenic
ATAAATAGGAAAGCCTGGTA+AGG 0.560891 4_3:-45254323 None:intergenic
TTCCTCCTCAGTCAATTCCA+AGG 0.561664 4_3:-45252736 None:intergenic
AAACATAAATGGTACATGGT+TGG 0.562444 4_3:+45252779 Msa0642940:CDS
ATTCAAATTACCTCTAACAC+CGG 0.563895 4_3:-45251252 None:intergenic
ATCCAGCACGAGCCAGATCA+AGG 0.564390 4_3:-45251040 None:intergenic
TGATTCTTCTGAATATGTGA+CGG 0.567873 4_3:+45254270 Msa0642940:CDS
CAAGCATATGCAGTTCCACC+GGG 0.568839 4_3:-45252897 None:intergenic
CATGAGTTAAGATGTTCTCA+TGG 0.569138 4_3:+45254433 Msa0642940:three_prime_UTR
GAACCATGGCACGACCTCGC+CGG 0.574081 4_3:+45250966 Msa0642940:CDS
TTACAATTGATGTATAAGAT+GGG 0.574782 4_3:+45254508 Msa0642940:three_prime_UTR
GAAGTATGTACAGAAGGCGT+GGG 0.575488 4_3:+45251193 Msa0642940:CDS
GATGAAATCAATGGAAAGGA+GGG 0.578092 4_3:+45251113 Msa0642940:CDS
TGATATGATACACTTTGCAA+TGG 0.578298 4_3:+45254363 Msa0642940:three_prime_UTR
TTGCCGGCGAGGTCGTGCCA+TGG 0.580382 4_3:-45250969 None:intergenic
AAATTTCGGGGAATGGAATG+TGG 0.581109 4_3:-45250834 None:intergenic
GGGAAGTCTCCGTGCAGTTG+CGG 0.586746 4_3:+45251133 Msa0642940:CDS
TGCGGTGGAGCTTGATGTGG+CGG 0.592898 4_3:+45251151 Msa0642940:CDS
AACTCATGCGTGATTCAAAG+AGG 0.594350 4_3:+45252820 Msa0642940:CDS
CAAGGACAACTTTGCCGGCG+AGG 0.595256 4_3:-45250980 None:intergenic
AAATTGACAGGTGATGGCAT+TGG 0.597713 4_3:+45254069 Msa0642940:intron
ATGAATGAATGTTGAGAATG+GGG 0.597936 4_3:-45250889 None:intergenic
ACCGGCGCATCAGCAGGGAT+CGG 0.598824 4_3:+45251005 Msa0642940:CDS
ACAAGCATATGCAGTTCCAC+CGG 0.601410 4_3:-45252898 None:intergenic
TCCTCCTCAGTCAATTCCAA+GGG 0.607693 4_3:-45252735 None:intergenic
CATATCAAGTATTCATAGTG+AGG 0.608610 4_3:-45254347 None:intergenic
GTATGTCTTAAAAGACAAGA+AGG 0.608944 4_3:-45250746 None:intergenic
TGGCAAAGCAACTAGAACCA+TGG 0.609409 4_3:+45250952 Msa0642940:CDS
TCAATTGCTGGCCTAGAGAG+GGG 0.613681 4_3:+45252867 Msa0642940:CDS
AACTGCATATGCTTGTTCAA+AGG 0.614285 4_3:+45252905 Msa0642940:CDS
TCATTGTGTGATGAAATCAA+TGG 0.617419 4_3:+45251104 Msa0642940:CDS
CAATTGCTGGCCTAGAGAGG+GGG 0.617473 4_3:+45252868 Msa0642940:CDS
ACCCTTGGAATTGACTGAGG+AGG 0.618106 4_3:+45252734 Msa0642940:CDS
TGATGAAATCAATGGAAAGG+AGG 0.620320 4_3:+45251112 Msa0642940:CDS
ATGCGTGATTCAAAGAGGAA+AGG 0.620679 4_3:+45252825 Msa0642940:CDS
TTGTCACCGGCGCATCAGCA+GGG 0.621162 4_3:+45251000 Msa0642940:CDS
GTATGTACAGAAGGCGTGGG+AGG 0.634153 4_3:+45251196 Msa0642940:CDS
CAAGCTCCACCGCAACTGCA+CGG 0.638345 4_3:-45251142 None:intergenic
AGTTGCGGTGGAGCTTGATG+TGG 0.644706 4_3:+45251148 Msa0642940:CDS
GTGTGATGAAATCAATGGAA+AGG 0.648715 4_3:+45251109 Msa0642940:CDS
AGAGTGAATTCAATATCACC+AGG 0.649340 4_3:+45254112 Msa0642940:CDS
TCTTCAAAATCAATTCAACA+TGG 0.652833 4_3:+45250932 Msa0642940:exon
TTCACCCTTGGAATTGACTG+AGG 0.656324 4_3:+45252731 Msa0642940:CDS
GATGCGTTGATCAATAATGC+CGG 0.659297 4_3:+45251233 Msa0642940:CDS
ACAGTGCCATTAAGAGAATG+GGG 0.679803 4_3:+45254202 Msa0642940:CDS
AATTATATATAAGAGCTCAA+CGG 0.689781 4_3:+45254602 Msa0642940:three_prime_UTR
AGGTGTCAATATGCTCACAA+AGG 0.699533 4_3:+45252929 Msa0642940:CDS
GGTGATGGCATTGGAATTGG+GGG 0.700914 4_3:+45254078 Msa0642940:intron
ATGGGAAATGGGAAATTTCG+GGG 0.745257 4_3:-45250846 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATAATTTTTTAAAATATA+AGG + chr4_3:45252503-45252522 Msa0642940:intron 0.0%
!!! AAAACTAATACTATTTTTTA+AGG - chr4_3:45251898-45251917 None:intergenic 10.0%
!!! ATTATAGTAGTATATATTTT+TGG - chr4_3:45252285-45252304 None:intergenic 10.0%
!! AATATTCATCAATTAAAATA+GGG + chr4_3:45253794-45253813 Msa0642940:intron 10.0%
!!! TTATAAATTTTATGTAGAAA+AGG + chr4_3:45253872-45253891 Msa0642940:intron 10.0%
!! GTCTAATACTTATAATATAA+GGG - chr4_3:45252051-45252070 None:intergenic 15.0%
!! AGTCTAATACTTATAATATA+AGG - chr4_3:45252052-45252071 None:intergenic 15.0%
!! TGTATGAAAAAAATATTGTA+AGG + chr4_3:45252361-45252380 Msa0642940:intron 15.0%
!!! TTAATCTTATACTTTTATCT+TGG - chr4_3:45252441-45252460 None:intergenic 15.0%
!!! TTAATAATTTTAAGTGTATG+TGG - chr4_3:45252661-45252680 None:intergenic 15.0%
!! ACAAAGATAAAATTGAATAT+AGG - chr4_3:45252991-45253010 None:intergenic 15.0%
!! TTAAATTAAACATTAATCCA+AGG + chr4_3:45253171-45253190 Msa0642940:intron 15.0%
!! TTTGAATCATAACAAAAATA+TGG + chr4_3:45253274-45253293 Msa0642940:intron 15.0%
!! GAATATTCATCAATTAAAAT+AGG + chr4_3:45253793-45253812 Msa0642940:intron 15.0%
!!! TTTTTGTAATAAAAATTGAC+AGG + chr4_3:45254057-45254076 Msa0642940:intron 15.0%
!! TTATGATGATTTATGGAAAT+GGG - chr4_3:45250867-45250886 None:intergenic 20.0%
!! TTTATGATGATTTATGGAAA+TGG - chr4_3:45250868-45250887 None:intergenic 20.0%
!! ACTGATACATATAATTATAC+CGG + chr4_3:45251344-45251363 Msa0642940:intron 20.0%
!!! AAGGTATTAAAGTGAAATAT+TGG - chr4_3:45251879-45251898 None:intergenic 20.0%
!!! ATTTTAAACATTAGACACTT+TGG + chr4_3:45251993-45252012 Msa0642940:intron 20.0%
!! TAGCATGTATATTTACAAAA+AGG + chr4_3:45252091-45252110 Msa0642940:intron 20.0%
!!! GTGTTTAAAACAAACATAAA+TGG + chr4_3:45252768-45252787 Msa0642940:CDS 20.0%
!! TTGTGTAAATAACTTTGTAA+GGG + chr4_3:45253102-45253121 Msa0642940:intron 20.0%
!! AGTAGTAGTATTAGAATAAA+GGG - chr4_3:45253389-45253408 None:intergenic 20.0%
!!! TAAGCAAAAGTTGATTTTTT+AGG - chr4_3:45253514-45253533 None:intergenic 20.0%
!!! CTTTTGCTTATAATAATGAT+CGG + chr4_3:45253524-45253543 Msa0642940:intron 20.0%
!! AATTTCTTGATAAGACAAAA+AGG - chr4_3:45253575-45253594 None:intergenic 20.0%
!!! TTTTTGTCTTATCAAGAAAT+TGG + chr4_3:45253574-45253593 Msa0642940:intron 20.0%
!!! TTTCACTTTCTCTATTTTAT+TGG - chr4_3:45253711-45253730 None:intergenic 20.0%
!!! TTCTGACACATTATTTTAAT+GGG - chr4_3:45253997-45254016 None:intergenic 20.0%
!! AAAATTTGATGAAGAAAGAT+TGG + chr4_3:45254158-45254177 Msa0642940:CDS 20.0%
!! ATTACAATTGATGTATAAGA+TGG + chr4_3:45254507-45254526 Msa0642940:three_prime_UTR 20.0%
!! TTACAATTGATGTATAAGAT+GGG + chr4_3:45254508-45254527 Msa0642940:three_prime_UTR 20.0%
!!! TGAGAATTTTTGAAAAGAAA+TGG + chr4_3:45254541-45254560 Msa0642940:three_prime_UTR 20.0%
! TGAATTTACTTACAACTTCA+TGG + chr4_3:45250777-45250796 Msa0642940:five_prime_UTR 25.0%
! AATGAATGAATGTTGAGAAT+GGG - chr4_3:45250893-45250912 None:intergenic 25.0%
! AAATGAATGAATGTTGAGAA+TGG - chr4_3:45250894-45250913 None:intergenic 25.0%
! TCTTCAAAATCAATTCAACA+TGG + chr4_3:45250932-45250951 Msa0642940:exon 25.0%
! TTCGAGAAAATCATATAATC+CGG - chr4_3:45251366-45251385 None:intergenic 25.0%
!!! TTGATTCAAAAAGTTGATGA+TGG + chr4_3:45251583-45251602 Msa0642940:intron 25.0%
! ATGATTTATTGTTTGTGTGA+AGG + chr4_3:45251635-45251654 Msa0642940:intron 25.0%
! TATACATGCTAGTAACTTAA+GGG - chr4_3:45252082-45252101 None:intergenic 25.0%
! ATATACATGCTAGTAACTTA+AGG - chr4_3:45252083-45252102 None:intergenic 25.0%
! TTGATCCCATTAGAAAATAT+TGG - chr4_3:45252159-45252178 None:intergenic 25.0%
! AAACAAACATAAATGGTACA+TGG + chr4_3:45252775-45252794 Msa0642940:CDS 25.0%
! CTTGTGTAAATAACTTTGTA+AGG + chr4_3:45253101-45253120 Msa0642940:intron 25.0%
! AGAATAGAGAATGTGATAAA+TGG + chr4_3:45253130-45253149 Msa0642940:intron 25.0%
! TACACTTGTCATATCATAAT+TGG - chr4_3:45253241-45253260 None:intergenic 25.0%
! TACGGTCTGAAAAAAAATTA+TGG - chr4_3:45253339-45253358 None:intergenic 25.0%
! GAGTAGTAGTATTAGAATAA+AGG - chr4_3:45253390-45253409 None:intergenic 25.0%
! ATAAATGAAGAGAGAGAATA+AGG - chr4_3:45253669-45253688 None:intergenic 25.0%
!!! TTAAAAAGGAAGTTTTGTCT+TGG - chr4_3:45253936-45253955 None:intergenic 25.0%
! CATTGAAAGGAAGTTTAAAA+AGG - chr4_3:45253950-45253969 None:intergenic 25.0%
!!! GTTCTGACACATTATTTTAA+TGG - chr4_3:45253998-45254017 None:intergenic 25.0%
! TAATAAAAATTGACAGGTGA+TGG + chr4_3:45254063-45254082 Msa0642940:intron 25.0%
! AATATATTTATTGCTGATGC+TGG + chr4_3:45254295-45254314 Msa0642940:CDS 25.0%
! ATTCATAGTGAGGAATAAAT+AGG - chr4_3:45254340-45254359 None:intergenic 25.0%
! AAAATATGATGAGTGAAACT+TGG + chr4_3:45254389-45254408 Msa0642940:three_prime_UTR 25.0%
!!! GTAGGATCAATTTTTGAGTA+AGG + chr4_3:45250647-45250666 Msa0642940:five_prime_UTR 30.0%
GTATGTCTTAAAAGACAAGA+AGG - chr4_3:45250749-45250768 None:intergenic 30.0%
AAATGGGAAATGGGAAATTT+CGG - chr4_3:45250851-45250870 None:intergenic 30.0%
GATTTATGGAAATGGGAAAT+GGG - chr4_3:45250860-45250879 None:intergenic 30.0%
TGATTTATGGAAATGGGAAA+TGG - chr4_3:45250861-45250880 None:intergenic 30.0%
!! TGGGGTTTTATGATGATTTA+TGG - chr4_3:45250874-45250893 None:intergenic 30.0%
ATGAATGAATGTTGAGAATG+GGG - chr4_3:45250892-45250911 None:intergenic 30.0%
TCATTGTGTGATGAAATCAA+TGG + chr4_3:45251104-45251123 Msa0642940:CDS 30.0%
! TATAGAGAAGTATGTACAGA+AGG + chr4_3:45251187-45251206 Msa0642940:CDS 30.0%
ATTCAAATTACCTCTAACAC+CGG - chr4_3:45251255-45251274 None:intergenic 30.0%
ACGTTTAAATCTACCAAGTA+CGG + chr4_3:45251279-45251298 Msa0642940:intron 30.0%
! ATCGTTCTTTATTTGAGATG+TGG + chr4_3:45251659-45251678 Msa0642940:intron 30.0%
GTCTAACATTTACAACTTGA+TGG + chr4_3:45252122-45252141 Msa0642940:intron 30.0%
TTACAACTTGATGGAACTAA+AGG + chr4_3:45252131-45252150 Msa0642940:intron 30.0%
TACAACTTGATGGAACTAAA+GGG + chr4_3:45252132-45252151 Msa0642940:intron 30.0%
! AAGGGTCCAATATTTTCTAA+TGG + chr4_3:45252150-45252169 Msa0642940:intron 30.0%
! AGGGTCCAATATTTTCTAAT+GGG + chr4_3:45252151-45252170 Msa0642940:intron 30.0%
AGCATAAAATATGTCGAGAA+AGG - chr4_3:45252615-45252634 None:intergenic 30.0%
! TCTCGACATATTTTATGCTT+TGG + chr4_3:45252616-45252635 Msa0642940:intron 30.0%
!! TTTTAAGTGTATGTGGTCAA+AGG - chr4_3:45252654-45252673 None:intergenic 30.0%
GATTTATTGTTGTGTTGTGT+AGG + chr4_3:45252699-45252718 Msa0642940:intron 30.0%
AAACATAAATGGTACATGGT+TGG + chr4_3:45252779-45252798 Msa0642940:CDS 30.0%
ATCAATATCTCTTCAATTGC+TGG + chr4_3:45252855-45252874 Msa0642940:CDS 30.0%
!! GAATTTGTTTTCATGTGACT+TGG + chr4_3:45253016-45253035 Msa0642940:intron 30.0%
!!! TCCTTGATTTTAGGATCATT+AGG + chr4_3:45253195-45253214 Msa0642940:intron 30.0%
!! TTTTTCAGACCGTATATATG+CGG + chr4_3:45253345-45253364 Msa0642940:intron 30.0%
CTAAAGTTTCCGCATATATA+CGG - chr4_3:45253357-45253376 None:intergenic 30.0%
TATATATGCGGAAACTTTAG+TGG + chr4_3:45253357-45253376 Msa0642940:intron 30.0%
! CTTTTGCTTATAATAGTGAC+TGG - chr4_3:45253416-45253435 None:intergenic 30.0%
TGCTTATAATAATGATCGGA+TGG + chr4_3:45253528-45253547 Msa0642940:intron 30.0%
!! GATGGAGTATTTGTTTTCTT+TGG + chr4_3:45253546-45253565 Msa0642940:intron 30.0%
TGGTAAAATCAAGAAGTTCA+CGG + chr4_3:45253594-45253613 Msa0642940:intron 30.0%
ATTTCAGATTTGAAAAGTCC+TGG - chr4_3:45254133-45254152 None:intergenic 30.0%
TGATTCTTCTGAATATGTGA+CGG + chr4_3:45254270-45254289 Msa0642940:CDS 30.0%
CATATCAAGTATTCATAGTG+AGG - chr4_3:45254350-45254369 None:intergenic 30.0%
TGATATGATACACTTTGCAA+TGG + chr4_3:45254363-45254382 Msa0642940:three_prime_UTR 30.0%
CGACAAATATCATGTTGTTG+AGG - chr4_3:45250690-45250709 None:intergenic 35.0%
!! AAGGATGATTGATTTGGTGT+TGG - chr4_3:45250812-45250831 None:intergenic 35.0%
AATGGGAAATGGGAAATTTC+GGG - chr4_3:45250850-45250869 None:intergenic 35.0%
GTGTGATGAAATCAATGGAA+AGG + chr4_3:45251109-45251128 Msa0642940:CDS 35.0%
TGATGAAATCAATGGAAAGG+AGG + chr4_3:45251112-45251131 Msa0642940:CDS 35.0%
GATGAAATCAATGGAAAGGA+GGG + chr4_3:45251113-45251132 Msa0642940:CDS 35.0%
TACAGTTATTAGACACGACA+TGG - chr4_3:45251416-45251435 None:intergenic 35.0%
AAGCGGTGCAATATTGAAAA+GGG + chr4_3:45251686-45251705 Msa0642940:intron 35.0%
! GAGTTTTGCTACATATGTAG+CGG - chr4_3:45251821-45251840 None:intergenic 35.0%
ATTGTGATTCCTTACGCTAT+CGG + chr4_3:45251918-45251937 Msa0642940:intron 35.0%
!! AATGGGATCAAAAGCACTTA+TGG + chr4_3:45252168-45252187 Msa0642940:intron 35.0%
!! ATGGGATCAAAAGCACTTAT+GGG + chr4_3:45252169-45252188 Msa0642940:intron 35.0%
ACTCAGAGATCAAAGTGAAA+CGG + chr4_3:45252214-45252233 Msa0642940:intron 35.0%
! AGCACTTTTCTTCGAATGAT+TGG + chr4_3:45252307-45252326 Msa0642940:intron 35.0%
TTGGATGATATAGCTTATGG+TGG - chr4_3:45252547-45252566 None:intergenic 35.0%
CACTTGGATGATATAGCTTA+TGG - chr4_3:45252550-45252569 None:intergenic 35.0%
! ATTAGTCACTTTCAGTCACT+TGG - chr4_3:45252566-45252585 None:intergenic 35.0%
AACTGCATATGCTTGTTCAA+AGG + chr4_3:45252905-45252924 Msa0642940:CDS 35.0%
GTCACATGATTGAAATGTCA+CGG + chr4_3:45253058-45253077 Msa0642940:intron 35.0%
TCACATGATTGAAATGTCAC+GGG + chr4_3:45253059-45253078 Msa0642940:intron 35.0%
!! AATGTCACGGGTTAAAGTTT+TGG + chr4_3:45253071-45253090 Msa0642940:intron 35.0%
! ATCCAAGGTTCCTTGATTTT+AGG + chr4_3:45253186-45253205 Msa0642940:intron 35.0%
ATCCTAAAATCAAGGAACCT+TGG - chr4_3:45253191-45253210 None:intergenic 35.0%
GCCTAATGATCCTAAAATCA+AGG - chr4_3:45253199-45253218 None:intergenic 35.0%
TGCTTATAATAGTGACTGGA+GGG - chr4_3:45253412-45253431 None:intergenic 35.0%
TTGCTTATAATAGTGACTGG+AGG - chr4_3:45253413-45253432 None:intergenic 35.0%
ACACATGGCAACAAGAATTA+AGG - chr4_3:45253620-45253639 None:intergenic 35.0%
ACTTCTTGATTCATCACACA+TGG - chr4_3:45253635-45253654 None:intergenic 35.0%
! TTTATCCCGCTCTATTGTTT+TGG + chr4_3:45253684-45253703 Msa0642940:intron 35.0%
ATTGGTCCAAAACAATAGAG+CGG - chr4_3:45253693-45253712 None:intergenic 35.0%
AACTTCCTTTCAATGTCTTC+AGG + chr4_3:45253955-45253974 Msa0642940:intron 35.0%
ATTGTCCTGAAGACATTGAA+AGG - chr4_3:45253963-45253982 None:intergenic 35.0%
TTTCAATGTCTTCAGGACAA+TGG + chr4_3:45253962-45253981 Msa0642940:intron 35.0%
AAGCAAAGACATACTGACAT+TGG + chr4_3:45254028-45254047 Msa0642940:intron 35.0%
AAAGACATACTGACATTGGT+TGG + chr4_3:45254032-45254051 Msa0642940:intron 35.0%
AGAGTGAATTCAATATCACC+AGG + chr4_3:45254112-45254131 Msa0642940:CDS 35.0%
! AACAGTGCCATTAAGAGAAT+GGG + chr4_3:45254201-45254220 Msa0642940:CDS 35.0%
GATTCTTCTGAATATGTGAC+GGG + chr4_3:45254271-45254290 Msa0642940:CDS 35.0%
ATAAATAGGAAAGCCTGGTA+AGG - chr4_3:45254326-45254345 None:intergenic 35.0%
CATGAGTTAAGATGTTCTCA+TGG + chr4_3:45254433-45254452 Msa0642940:three_prime_UTR 35.0%
TCTCATGGTTACTAATCTAC+AGG + chr4_3:45254448-45254467 Msa0642940:three_prime_UTR 35.0%
!! GATGATTGATTTGGTGTTGG+TGG - chr4_3:45250809-45250828 None:intergenic 40.0%
GTGGTGAAGGATGATTGATT+TGG - chr4_3:45250818-45250837 None:intergenic 40.0%
AAATTTCGGGGAATGGAATG+TGG - chr4_3:45250837-45250856 None:intergenic 40.0%
AAATGGGAAATTTCGGGGAA+TGG - chr4_3:45250844-45250863 None:intergenic 40.0%
ATGGGAAATGGGAAATTTCG+GGG - chr4_3:45250849-45250868 None:intergenic 40.0%
! GATGCGTTGATCAATAATGC+CGG + chr4_3:45251233-45251252 Msa0642940:CDS 40.0%
! ATCAATAATGCCGGTGTTAG+AGG + chr4_3:45251242-45251261 Msa0642940:CDS 40.0%
!! ATCTAAAGAGTGTCCGTACT+TGG - chr4_3:45251295-45251314 None:intergenic 40.0%
! ATTTGAGATGTGGTACCAAG+CGG + chr4_3:45251669-45251688 Msa0642940:intron 40.0%
! CTTTTCAATATTGCACCGCT+TGG - chr4_3:45251687-45251706 None:intergenic 40.0%
CAAGCGGTGCAATATTGAAA+AGG + chr4_3:45251685-45251704 Msa0642940:intron 40.0%
!! CTATCGGTGTTGAACACTTT+GGG + chr4_3:45251934-45251953 Msa0642940:intron 40.0%
AACTCATGCGTGATTCAAAG+AGG + chr4_3:45252820-45252839 Msa0642940:CDS 40.0%
ATGCGTGATTCAAAGAGGAA+AGG + chr4_3:45252825-45252844 Msa0642940:CDS 40.0%
AGGTGTCAATATGCTCACAA+AGG + chr4_3:45252929-45252948 Msa0642940:CDS 40.0%
TCATGTGACGATAACTTTCC+AGG - chr4_3:45253047-45253066 None:intergenic 40.0%
TTGGTCCAAAACAATAGAGC+GGG - chr4_3:45253692-45253711 None:intergenic 40.0%
ATTCTTAACCATTGCCCTGA+GGG - chr4_3:45253835-45253854 None:intergenic 40.0%
AATTCTTAACCATTGCCCTG+AGG - chr4_3:45253836-45253855 None:intergenic 40.0%
! AAATTGACAGGTGATGGCAT+TGG + chr4_3:45254069-45254088 Msa0642940:intron 40.0%
TCTTAATGGCACTGTTCTCA+TGG - chr4_3:45254197-45254216 None:intergenic 40.0%
! GAACAGTGCCATTAAGAGAA+TGG + chr4_3:45254200-45254219 Msa0642940:CDS 40.0%
! ACAGTGCCATTAAGAGAATG+GGG + chr4_3:45254202-45254221 Msa0642940:CDS 40.0%
CGAGCAATTGATGTTAATGC+TGG - chr4_3:45254238-45254257 None:intergenic 40.0%
GAGGAATAAATAGGAAAGCC+TGG - chr4_3:45254331-45254350 None:intergenic 40.0%
TGGCAAAGCAACTAGAACCA+TGG + chr4_3:45250952-45250971 Msa0642940:CDS 45.0%
ACGTGATTTCTGCCTTGATC+TGG + chr4_3:45251028-45251047 Msa0642940:CDS 45.0%
! TGCTGGATGTTTTGTGATCG+CGG + chr4_3:45251055-45251074 Msa0642940:CDS 45.0%
! AGAAGTATGTACAGAAGGCG+TGG + chr4_3:45251192-45251211 Msa0642940:CDS 45.0%
! GAAGTATGTACAGAAGGCGT+GGG + chr4_3:45251193-45251212 Msa0642940:CDS 45.0%
TGTTCAACACCGATAGCGTA+AGG - chr4_3:45251930-45251949 None:intergenic 45.0%
!! GCTATCGGTGTTGAACACTT+TGG + chr4_3:45251933-45251952 Msa0642940:intron 45.0%
AGGAAATGTGAGTTCACCCT+TGG + chr4_3:45252719-45252738 Msa0642940:intron 45.0%
TTCACCCTTGGAATTGACTG+AGG + chr4_3:45252731-45252750 Msa0642940:CDS 45.0%
TCCTCCTCAGTCAATTCCAA+GGG - chr4_3:45252738-45252757 None:intergenic 45.0%
TTCCTCCTCAGTCAATTCCA+AGG - chr4_3:45252739-45252758 None:intergenic 45.0%
TGGAATTGACTGAGGAGGAA+TGG + chr4_3:45252739-45252758 Msa0642940:CDS 45.0%
! TTCAATTGCTGGCCTAGAGA+GGG + chr4_3:45252866-45252885 Msa0642940:CDS 45.0%
ACAAGCATATGCAGTTCCAC+CGG - chr4_3:45252901-45252920 None:intergenic 45.0%
GCATATGCTTGTTCAAAGGC+AGG + chr4_3:45252909-45252928 Msa0642940:CDS 45.0%
! ACAGGTGATGGCATTGGAAT+TGG + chr4_3:45254075-45254094 Msa0642940:intron 45.0%
! CAGGTGATGGCATTGGAATT+GGG + chr4_3:45254076-45254095 Msa0642940:intron 45.0%
! AGGTGATGGCATTGGAATTG+GGG + chr4_3:45254077-45254096 Msa0642940:intron 45.0%
! GAAGTGCCCCATTCTCTTAA+TGG - chr4_3:45254211-45254230 None:intergenic 45.0%
GGTGACAAGGACAACTTTGC+CGG - chr4_3:45250988-45251007 None:intergenic 50.0%
GGCAAAGTTGTCCTTGTCAC+CGG + chr4_3:45250987-45251006 Msa0642940:CDS 50.0%
ACCCTTGGAATTGACTGAGG+AGG + chr4_3:45252734-45252753 Msa0642940:CDS 50.0%
! CTTCAATTGCTGGCCTAGAG+AGG + chr4_3:45252865-45252884 Msa0642940:CDS 50.0%
! TCAATTGCTGGCCTAGAGAG+GGG + chr4_3:45252867-45252886 Msa0642940:CDS 50.0%
CAAGCATATGCAGTTCCACC+GGG - chr4_3:45252900-45252919 None:intergenic 50.0%
!! TCATGTGACTTGGTGCAACC+TGG + chr4_3:45253026-45253045 Msa0642940:intron 50.0%
TCTTGCTAACCAATGCCCTC+AGG + chr4_3:45253817-45253836 Msa0642940:intron 50.0%
CTTGCTAACCAATGCCCTCA+GGG + chr4_3:45253818-45253837 Msa0642940:intron 50.0%
! GGTGATGGCATTGGAATTGG+GGG + chr4_3:45254078-45254097 Msa0642940:intron 50.0%
CGGGGAATGGAATGTGGTGA+AGG - chr4_3:45250831-45250850 None:intergenic 55.0%
ATCCAGCACGAGCCAGATCA+AGG - chr4_3:45251043-45251062 None:intergenic 55.0%
AGTTGCGGTGGAGCTTGATG+TGG + chr4_3:45251148-45251167 Msa0642940:CDS 55.0%
! GTATGTACAGAAGGCGTGGG+AGG + chr4_3:45251196-45251215 Msa0642940:CDS 55.0%
! CAATTGCTGGCCTAGAGAGG+GGG + chr4_3:45252868-45252887 Msa0642940:CDS 55.0%
AACCAATGCCCTCAGGGCAA+TGG + chr4_3:45253824-45253843 Msa0642940:intron 55.0%
! AACCATTGCCCTGAGGGCAT+TGG - chr4_3:45253829-45253848 None:intergenic 55.0%
!! GATGCTGGTGCTACCTTACC+AGG + chr4_3:45254310-45254329 Msa0642940:CDS 55.0%
CAAGGACAACTTTGCCGGCG+AGG - chr4_3:45250983-45251002 None:intergenic 60.0%
TTGTCACCGGCGCATCAGCA+GGG + chr4_3:45251000-45251019 Msa0642940:CDS 60.0%
! TGCCTTGATCTGGCTCGTGC+TGG + chr4_3:45251038-45251057 Msa0642940:CDS 60.0%
GGGAAGTCTCCGTGCAGTTG+CGG + chr4_3:45251133-45251152 Msa0642940:CDS 60.0%
AAGTCTCCGTGCAGTTGCGG+TGG + chr4_3:45251136-45251155 Msa0642940:CDS 60.0%
CAAGCTCCACCGCAACTGCA+CGG - chr4_3:45251145-45251164 None:intergenic 60.0%
TGCGGTGGAGCTTGATGTGG+CGG + chr4_3:45251151-45251170 Msa0642940:CDS 60.0%
GAGCTTGATGTGGCGGCTGA+TGG + chr4_3:45251158-45251177 Msa0642940:CDS 60.0%
CTTGATGTGGCGGCTGATGG+TGG + chr4_3:45251161-45251180 Msa0642940:CDS 60.0%
!! CAGAAGGCGTGGGAGGCTTT+TGG + chr4_3:45251203-45251222 Msa0642940:CDS 60.0%
CTAGAGAGGGGGCAATTGCC+CGG + chr4_3:45252879-45252898 Msa0642940:CDS 60.0%
GAACCATGGCACGACCTCGC+CGG + chr4_3:45250966-45250985 Msa0642940:CDS 65.0%
! CTGCTGATGCGCCGGTGACA+AGG - chr4_3:45251001-45251020 None:intergenic 65.0%
CTTGTCACCGGCGCATCAGC+AGG + chr4_3:45250999-45251018 Msa0642940:CDS 65.0%
ACCGGCGCATCAGCAGGGAT+CGG + chr4_3:45251005-45251024 Msa0642940:CDS 65.0%
TCCGATCCCTGCTGATGCGC+CGG - chr4_3:45251009-45251028 None:intergenic 65.0%
CGGGCAATTGCCCCCTCTCT+AGG - chr4_3:45252881-45252900 None:intergenic 65.0%
TTGCCGGCGAGGTCGTGCCA+TGG - chr4_3:45250972-45250991 None:intergenic 70.0%
GAGAGGGGGCAATTGCCCGG+TGG + chr4_3:45252882-45252901 Msa0642940:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 45250647 45254623 45250647 ID=Msa0642940;Name=Msa0642940
chr4_3 mRNA 45250647 45254623 45250647 ID=Msa0642940-mRNA-1;Parent=Msa0642940;Name=Msa0642940-mRNA-1;_AED=0.04;_eAED=0.04;_QI=304|1|1|1|1|1|3|266|273
chr4_3 exon 45250647 45251263 45250647 ID=Msa0642940-mRNA-1:exon:10387;Parent=Msa0642940-mRNA-1
chr4_3 exon 45252721 45252950 45252721 ID=Msa0642940-mRNA-1:exon:10388;Parent=Msa0642940-mRNA-1
chr4_3 exon 45254079 45254623 45254079 ID=Msa0642940-mRNA-1:exon:10389;Parent=Msa0642940-mRNA-1
chr4_3 five_prime_UTR 45250647 45250950 45250647 ID=Msa0642940-mRNA-1:five_prime_utr;Parent=Msa0642940-mRNA-1
chr4_3 CDS 45250951 45251263 45250951 ID=Msa0642940-mRNA-1:cds;Parent=Msa0642940-mRNA-1
chr4_3 CDS 45252721 45252950 45252721 ID=Msa0642940-mRNA-1:cds;Parent=Msa0642940-mRNA-1
chr4_3 CDS 45254079 45254357 45254079 ID=Msa0642940-mRNA-1:cds;Parent=Msa0642940-mRNA-1
chr4_3 three_prime_UTR 45254358 45254623 45254358 ID=Msa0642940-mRNA-1:three_prime_utr;Parent=Msa0642940-mRNA-1
Gene Sequence

>Msa0642940

ATGGCAAAGCAACTAGAACCATGGCACGACCTCGCCGGCAAAGTTGTCCTTGTCACCGGCGCATCAGCAGGGATCGGACGTGATTTCTGCCTTGATCTGGCTCGTGCTGGATGTTTTGTGATCGCGGCTGCTCGTCGTGTAGATCGTTTACAGTCATTGTGTGATGAAATCAATGGAAAGGAGGGAAGTCTCCGTGCAGTTGCGGTGGAGCTTGATGTGGCGGCTGATGGTGGAGCTATAGAGAAGTATGTACAGAAGGCGTGGGAGGCTTTTGGACATGTTGATGCGTTGATCAATAATGCCGGTGTTAGAGGAAATGTGAGTTCACCCTTGGAATTGACTGAGGAGGAATGGAACAATGTGTTTAAAACAAACATAAATGGTACATGGTTGGTGTCAAAATATGTATGCAAACTCATGCGTGATTCAAAGAGGAAAGGATCAATTATCAATATCTCTTCAATTGCTGGCCTAGAGAGGGGGCAATTGCCCGGTGGAACTGCATATGCTTGTTCAAAGGCAGGTGTCAATATGCTCACAAAGGTGATGGCATTGGAATTGGGGGCACACAAAATAAGAGTGAATTCAATATCACCAGGACTTTTCAAATCTGAAATTACTGAAAATTTGATGAAGAAAGATTGGCTAAACAATGTAGCCATGAGAACAGTGCCATTAAGAGAATGGGGCACTTCAAATCCAGCATTAACATCAATTGCTCGCTACTTAATTCATGATTCTTCTGAATATGTGACGGGAAATATATTTATTGCTGATGCTGGTGCTACCTTACCAGGCTTTCCTATTTATTCCTCACTATGA

Protein sequence

>Msa0642940

MAKQLEPWHDLAGKVVLVTGASAGIGRDFCLDLARAGCFVIAAARRVDRLQSLCDEINGKEGSLRAVAVELDVAADGGAIEKYVQKAWEAFGHVDALINNAGVRGNVSSPLELTEEEWNNVFKTNINGTWLVSKYVCKLMRDSKRKGSIINISSIAGLERGQLPGGTAYACSKAGVNMLTKVMALELGAHKIRVNSISPGLFKSEITENLMKKDWLNNVAMRTVPLREWGTSNPALTSIARYLIHDSSEYVTGNIFIADAGATLPGFPIYSSL*