Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547080 | XP_013455996.1 | 92.308 | 273 | 14 | 1 | 1 | 266 | 1 | 273 | 0.0 | 511 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547080 | sp|Q9X248|FABG_THEMA | 33.333 | 255 | 151 | 8 | 11 | 257 | 3 | 246 | 2.05e-33 | 124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547080 | I3T7Z9 | 92.308 | 273 | 14 | 1 | 1 | 266 | 1 | 273 | 0.0 | 511 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0382400 | Msa0547080 | 0.825159 | 5.457780e-54 | -8.615850e-47 |
| Msa0547080 | Msa0642940 | 0.918996 | 7.805570e-87 | -8.615850e-47 |
| Msa0547080 | Msa1082290 | 0.819366 | 1.206373e-52 | -8.615850e-47 |
| Msa0547080 | Msa1362020 | 0.807036 | 6.149304e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547080 | MtrunA17_Chr4g0028921 | 92.308 | 273 | 14 | 1 | 1 | 266 | 1 | 273 | 0.0 | 511 |
| Msa0547080 | MtrunA17_Chr4g0028911 | 90.476 | 273 | 19 | 1 | 1 | 266 | 1 | 273 | 0.0 | 502 |
| Msa0547080 | MtrunA17_Chr1g0171831 | 66.142 | 254 | 74 | 2 | 4 | 245 | 7 | 260 | 2.09e-118 | 339 |
| Msa0547080 | MtrunA17_Chr3g0122901 | 29.885 | 261 | 164 | 8 | 6 | 257 | 70 | 320 | 7.15e-26 | 103 |
| Msa0547080 | MtrunA17_Chr1g0146811 | 29.762 | 252 | 168 | 3 | 14 | 257 | 6 | 256 | 1.21e-24 | 99.4 |
| Msa0547080 | MtrunA17_Chr4g0025971 | 30.370 | 270 | 155 | 9 | 11 | 263 | 14 | 267 | 2.25e-22 | 93.2 |
| Msa0547080 | MtrunA17_Chr4g0026001 | 30.798 | 263 | 163 | 8 | 11 | 263 | 14 | 267 | 1.83e-21 | 90.9 |
| Msa0547080 | MtrunA17_Chr6g0459261 | 26.357 | 258 | 166 | 7 | 11 | 254 | 25 | 272 | 4.45e-20 | 87.0 |
| Msa0547080 | MtrunA17_Chr4g0025981 | 29.008 | 262 | 167 | 8 | 13 | 264 | 43 | 295 | 6.21e-20 | 87.4 |
| Msa0547080 | MtrunA17_Chr2g0324021 | 29.889 | 271 | 153 | 8 | 1 | 254 | 1 | 251 | 7.35e-20 | 86.3 |
| Msa0547080 | MtrunA17_Chr3g0112171 | 27.413 | 259 | 170 | 8 | 11 | 260 | 15 | 264 | 1.47e-19 | 85.5 |
| Msa0547080 | MtrunA17_Chr7g0270441 | 29.151 | 271 | 141 | 10 | 11 | 254 | 6 | 252 | 1.54e-19 | 85.5 |
| Msa0547080 | MtrunA17_Chr3g0112141 | 28.846 | 260 | 165 | 11 | 11 | 260 | 17 | 266 | 6.17e-19 | 84.0 |
| Msa0547080 | MtrunA17_Chr7g0270451 | 30.620 | 258 | 153 | 9 | 11 | 254 | 6 | 251 | 1.25e-18 | 82.8 |
| Msa0547080 | MtrunA17_Chr6g0459281 | 27.843 | 255 | 150 | 9 | 11 | 246 | 13 | 252 | 2.10e-18 | 82.4 |
| Msa0547080 | MtrunA17_Chr3g0112151 | 27.969 | 261 | 168 | 10 | 10 | 260 | 85 | 335 | 2.37e-18 | 83.2 |
| Msa0547080 | MtrunA17_Chr4g0044131 | 29.545 | 264 | 162 | 8 | 1 | 254 | 4 | 253 | 6.01e-18 | 81.3 |
| Msa0547080 | MtrunA17_Chr4g0032141 | 27.907 | 258 | 170 | 10 | 11 | 260 | 56 | 305 | 2.34e-17 | 80.1 |
| Msa0547080 | MtrunA17_Chr3g0112271 | 29.104 | 268 | 156 | 13 | 10 | 260 | 16 | 266 | 8.26e-17 | 78.2 |
| Msa0547080 | MtrunA17_Chr6g0459331 | 26.641 | 259 | 164 | 7 | 11 | 254 | 13 | 260 | 8.94e-17 | 77.8 |
| Msa0547080 | MtrunA17_Chr1g0191751 | 27.273 | 264 | 177 | 6 | 6 | 259 | 96 | 354 | 2.82e-16 | 77.4 |
| Msa0547080 | MtrunA17_Chr3g0112261 | 26.820 | 261 | 171 | 10 | 10 | 260 | 18 | 268 | 2.97e-16 | 76.6 |
| Msa0547080 | MtrunA17_Chr7g0239491 | 26.953 | 256 | 170 | 7 | 11 | 256 | 15 | 263 | 6.90e-16 | 75.5 |
| Msa0547080 | MtrunA17_Chr6g0459351 | 27.092 | 251 | 157 | 9 | 11 | 246 | 13 | 252 | 4.09e-15 | 73.2 |
| Msa0547080 | MtrunA17_Chr4g0074511 | 28.090 | 267 | 160 | 12 | 7 | 254 | 36 | 289 | 1.43e-14 | 72.0 |
| Msa0547080 | MtrunA17_Chr7g0249571 | 32.386 | 176 | 111 | 6 | 1 | 173 | 28 | 198 | 9.04e-14 | 70.1 |
| Msa0547080 | MtrunA17_Chr7g0239481 | 26.357 | 258 | 172 | 8 | 11 | 257 | 15 | 265 | 9.42e-14 | 69.3 |
| Msa0547080 | MtrunA17_Chr3g0124471 | 30.412 | 194 | 113 | 8 | 15 | 199 | 30 | 210 | 1.65e-13 | 68.9 |
| Msa0547080 | MtrunA17_Chr3g0123251 | 32.121 | 165 | 105 | 4 | 13 | 174 | 53 | 213 | 2.01e-13 | 68.9 |
| Msa0547080 | MtrunA17_Chr4g0040371 | 29.044 | 272 | 165 | 9 | 2 | 256 | 11 | 271 | 3.80e-13 | 67.8 |
| Msa0547080 | MtrunA17_Chr6g0459271 | 24.082 | 245 | 170 | 6 | 11 | 245 | 13 | 251 | 4.76e-13 | 67.4 |
| Msa0547080 | MtrunA17_Chr7g0267011 | 30.366 | 191 | 117 | 6 | 11 | 193 | 8 | 190 | 6.01e-13 | 65.9 |
| Msa0547080 | MtrunA17_Chr7g0244061 | 27.636 | 275 | 161 | 9 | 11 | 256 | 29 | 294 | 7.13e-13 | 67.4 |
| Msa0547080 | MtrunA17_Chr7g0259531 | 27.509 | 269 | 169 | 9 | 1 | 254 | 1 | 258 | 8.14e-13 | 66.6 |
| Msa0547080 | MtrunA17_Chr7g0272961 | 23.221 | 267 | 180 | 7 | 6 | 257 | 35 | 291 | 9.23e-13 | 67.0 |
| Msa0547080 | MtrunA17_Chr7g0259521 | 27.652 | 264 | 160 | 11 | 7 | 254 | 5 | 253 | 9.68e-13 | 66.6 |
| Msa0547080 | MtrunA17_Chr7g0267001 | 28.137 | 263 | 149 | 9 | 1 | 254 | 4 | 235 | 1.78e-12 | 65.5 |
| Msa0547080 | MtrunA17_Chr4g0075531 | 27.099 | 262 | 164 | 10 | 5 | 254 | 1 | 247 | 3.05e-12 | 65.1 |
| Msa0547080 | MtrunA17_Chr7g0268591 | 27.863 | 262 | 163 | 10 | 11 | 256 | 33 | 284 | 1.33e-11 | 63.5 |
| Msa0547080 | MtrunA17_Chr6g0485711 | 25.000 | 216 | 140 | 5 | 5 | 199 | 172 | 386 | 1.87e-11 | 63.9 |
| Msa0547080 | MtrunA17_Chr8g0386201 | 27.500 | 200 | 131 | 6 | 9 | 201 | 43 | 235 | 2.40e-11 | 63.2 |
| Msa0547080 | MtrunA17_Chr3g0084871 | 27.372 | 274 | 160 | 9 | 7 | 256 | 12 | 270 | 8.49e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547080 | AT3G55290.1 | 65.441 | 272 | 85 | 3 | 3 | 266 | 10 | 280 | 1.45e-128 | 366 |
| Msa0547080 | AT3G55290.2 | 65.441 | 272 | 85 | 3 | 3 | 266 | 9 | 279 | 2.25e-128 | 365 |
| Msa0547080 | AT3G55310.1 | 63.971 | 272 | 89 | 3 | 3 | 266 | 9 | 279 | 8.65e-126 | 359 |
| Msa0547080 | AT3G46170.1 | 63.235 | 272 | 91 | 3 | 3 | 266 | 18 | 288 | 1.76e-124 | 356 |
| Msa0547080 | AT1G62610.1 | 61.905 | 273 | 94 | 3 | 3 | 266 | 6 | 277 | 5.22e-122 | 349 |
| Msa0547080 | AT1G63380.4 | 61.538 | 273 | 95 | 3 | 3 | 266 | 11 | 282 | 5.34e-122 | 349 |
| Msa0547080 | AT1G62610.3 | 61.905 | 273 | 94 | 3 | 3 | 266 | 7 | 278 | 5.96e-122 | 349 |
| Msa0547080 | AT1G62610.2 | 61.905 | 273 | 94 | 3 | 3 | 266 | 5 | 276 | 6.14e-122 | 349 |
| Msa0547080 | AT1G62610.4 | 61.905 | 273 | 94 | 3 | 3 | 266 | 11 | 282 | 6.34e-122 | 349 |
| Msa0547080 | AT1G63380.3 | 61.538 | 273 | 95 | 3 | 3 | 266 | 7 | 278 | 7.28e-122 | 349 |
| Msa0547080 | AT1G63380.1 | 61.538 | 273 | 95 | 3 | 3 | 266 | 9 | 280 | 8.07e-122 | 349 |
| Msa0547080 | AT1G63380.2 | 61.538 | 273 | 95 | 3 | 3 | 266 | 14 | 285 | 1.11e-121 | 349 |
| Msa0547080 | AT2G17845.1 | 63.296 | 267 | 88 | 3 | 10 | 266 | 46 | 312 | 6.15e-119 | 343 |
| Msa0547080 | AT3G01980.1 | 31.890 | 254 | 163 | 4 | 13 | 257 | 5 | 257 | 5.61e-37 | 132 |
| Msa0547080 | AT3G01980.4 | 31.890 | 254 | 163 | 4 | 13 | 257 | 5 | 257 | 5.61e-37 | 132 |
| Msa0547080 | AT3G01980.5 | 33.180 | 217 | 136 | 3 | 50 | 257 | 17 | 233 | 1.28e-33 | 122 |
| Msa0547080 | AT3G01980.3 | 28.521 | 284 | 163 | 5 | 13 | 257 | 5 | 287 | 1.28e-30 | 116 |
| Msa0547080 | AT3G01980.6 | 33.333 | 165 | 107 | 3 | 13 | 175 | 5 | 168 | 5.52e-24 | 95.9 |
| Msa0547080 | AT5G06060.1 | 32.046 | 259 | 160 | 10 | 10 | 260 | 8 | 258 | 2.68e-23 | 95.9 |
| Msa0547080 | AT1G24360.1 | 28.517 | 263 | 159 | 10 | 6 | 254 | 69 | 316 | 4.42e-23 | 96.3 |
| Msa0547080 | AT3G26770.1 | 29.348 | 276 | 161 | 11 | 11 | 264 | 41 | 304 | 4.37e-19 | 85.1 |
| Msa0547080 | AT2G29150.1 | 28.148 | 270 | 178 | 9 | 1 | 260 | 1 | 264 | 2.38e-18 | 82.8 |
| Msa0547080 | AT3G51680.1 | 28.832 | 274 | 157 | 9 | 11 | 256 | 32 | 295 | 8.82e-18 | 81.6 |
| Msa0547080 | AT2G29370.1 | 27.839 | 273 | 180 | 9 | 1 | 262 | 1 | 267 | 1.76e-17 | 80.1 |
| Msa0547080 | AT2G29260.1 | 28.517 | 263 | 171 | 12 | 6 | 260 | 64 | 317 | 3.27e-17 | 80.1 |
| Msa0547080 | AT2G29350.1 | 27.237 | 257 | 174 | 8 | 10 | 260 | 14 | 263 | 6.90e-17 | 78.6 |
| Msa0547080 | AT3G47360.1 | 30.653 | 199 | 126 | 6 | 8 | 200 | 42 | 234 | 1.39e-16 | 78.2 |
| Msa0547080 | AT5G18210.1 | 28.736 | 261 | 157 | 11 | 10 | 252 | 7 | 256 | 1.80e-16 | 77.4 |
| Msa0547080 | AT1G54870.1 | 26.136 | 264 | 176 | 8 | 6 | 257 | 77 | 333 | 9.12e-16 | 76.3 |
| Msa0547080 | AT1G54870.2 | 26.136 | 264 | 176 | 8 | 6 | 257 | 79 | 335 | 1.08e-15 | 76.3 |
| Msa0547080 | AT2G29290.2 | 25.391 | 256 | 181 | 6 | 10 | 260 | 6 | 256 | 1.23e-15 | 75.1 |
| Msa0547080 | AT1G10310.1 | 30.769 | 195 | 122 | 6 | 11 | 199 | 15 | 202 | 1.44e-15 | 74.3 |
| Msa0547080 | AT3G26760.1 | 26.515 | 264 | 167 | 7 | 11 | 256 | 36 | 290 | 3.24e-15 | 74.3 |
| Msa0547080 | AT5G50590.1 | 31.019 | 216 | 128 | 10 | 13 | 216 | 47 | 253 | 4.94e-15 | 73.9 |
| Msa0547080 | AT5G50690.1 | 31.019 | 216 | 128 | 10 | 13 | 216 | 47 | 253 | 4.94e-15 | 73.9 |
| Msa0547080 | AT5G50590.2 | 31.959 | 194 | 114 | 8 | 13 | 197 | 47 | 231 | 7.19e-15 | 72.8 |
| Msa0547080 | AT5G50690.2 | 31.959 | 194 | 114 | 8 | 13 | 197 | 47 | 231 | 7.19e-15 | 72.8 |
| Msa0547080 | AT5G65205.1 | 34.356 | 163 | 92 | 7 | 15 | 175 | 10 | 159 | 7.96e-15 | 73.2 |
| Msa0547080 | AT2G29360.1 | 28.467 | 274 | 173 | 12 | 1 | 260 | 1 | 265 | 8.63e-15 | 72.8 |
| Msa0547080 | AT1G67730.1 | 32.571 | 175 | 109 | 5 | 5 | 174 | 41 | 211 | 8.69e-15 | 73.2 |
| Msa0547080 | AT3G47350.1 | 31.548 | 168 | 109 | 4 | 8 | 175 | 41 | 202 | 9.34e-15 | 73.2 |
| Msa0547080 | AT3G47350.2 | 31.548 | 168 | 109 | 4 | 8 | 175 | 41 | 202 | 1.09e-14 | 73.2 |
| Msa0547080 | AT2G47140.1 | 27.376 | 263 | 161 | 8 | 11 | 257 | 6 | 254 | 1.21e-14 | 72.0 |
| Msa0547080 | AT5G10050.1 | 33.742 | 163 | 93 | 7 | 15 | 175 | 9 | 158 | 2.33e-14 | 71.6 |
| Msa0547080 | AT4G13180.1 | 28.627 | 255 | 164 | 9 | 11 | 254 | 13 | 260 | 3.03e-14 | 71.2 |
| Msa0547080 | AT1G24470.1 | 28.916 | 166 | 107 | 5 | 13 | 174 | 52 | 210 | 4.06e-14 | 71.2 |
| Msa0547080 | AT2G47130.1 | 26.923 | 260 | 165 | 7 | 11 | 257 | 6 | 253 | 4.27e-14 | 70.5 |
| Msa0547080 | AT1G52340.1 | 26.718 | 262 | 172 | 7 | 11 | 256 | 18 | 275 | 4.12e-13 | 68.2 |
| Msa0547080 | AT2G30670.1 | 26.236 | 263 | 168 | 9 | 11 | 260 | 7 | 256 | 1.18e-12 | 66.6 |
| Msa0547080 | AT2G47120.1 | 25.391 | 256 | 173 | 6 | 11 | 257 | 6 | 252 | 2.15e-12 | 65.9 |
| Msa0547080 | AT3G05260.1 | 24.809 | 262 | 175 | 9 | 6 | 254 | 32 | 284 | 2.40e-12 | 65.9 |
| Msa0547080 | AT2G47120.2 | 25.391 | 256 | 173 | 6 | 11 | 257 | 7 | 253 | 2.46e-12 | 65.9 |
| Msa0547080 | AT3G29250.1 | 27.203 | 261 | 158 | 7 | 11 | 254 | 44 | 289 | 4.06e-12 | 65.5 |
| Msa0547080 | AT3G29250.3 | 27.203 | 261 | 158 | 7 | 11 | 254 | 42 | 287 | 4.71e-12 | 65.1 |
| Msa0547080 | AT5G50700.1 | 31.188 | 202 | 121 | 8 | 9 | 201 | 43 | 235 | 5.33e-12 | 65.5 |
| Msa0547080 | AT5G50600.1 | 31.188 | 202 | 121 | 8 | 9 | 201 | 43 | 235 | 5.33e-12 | 65.5 |
| Msa0547080 | AT3G29250.2 | 27.239 | 268 | 149 | 8 | 11 | 254 | 6 | 251 | 5.50e-12 | 64.7 |
| Msa0547080 | AT5G61830.1 | 33.108 | 148 | 96 | 2 | 15 | 162 | 38 | 182 | 8.80e-12 | 64.7 |
| Msa0547080 | AT5G61830.2 | 33.108 | 148 | 96 | 2 | 15 | 162 | 38 | 182 | 8.80e-12 | 64.7 |
| Msa0547080 | AT2G29350.3 | 28.000 | 175 | 115 | 7 | 92 | 260 | 56 | 225 | 1.44e-11 | 63.2 |
| Msa0547080 | AT2G29310.1 | 27.985 | 268 | 157 | 12 | 11 | 260 | 7 | 256 | 2.89e-11 | 62.8 |
| Msa0547080 | AT3G42960.1 | 30.337 | 267 | 146 | 11 | 14 | 256 | 11 | 261 | 3.19e-11 | 62.8 |
| Msa0547080 | AT2G29340.2 | 26.136 | 264 | 167 | 10 | 11 | 260 | 7 | 256 | 4.01e-11 | 62.4 |
| Msa0547080 | AT4G23430.1 | 27.350 | 234 | 143 | 8 | 10 | 236 | 26 | 239 | 4.12e-11 | 62.8 |
| Msa0547080 | AT2G29340.1 | 26.038 | 265 | 168 | 10 | 10 | 260 | 6 | 256 | 4.86e-11 | 62.4 |
| Msa0547080 | AT4G23430.2 | 29.878 | 164 | 105 | 4 | 10 | 169 | 26 | 183 | 6.29e-11 | 62.0 |
| Msa0547080 | AT2G37540.1 | 25.940 | 266 | 163 | 8 | 10 | 249 | 30 | 287 | 7.01e-11 | 62.0 |
| Msa0547080 | AT3G03330.1 | 30.909 | 165 | 109 | 3 | 11 | 173 | 41 | 202 | 7.66e-11 | 62.0 |
Find 103 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGTGCCCCATTCTCTTAA+TGG | 0.197409 | 4_1:-39790898 | None:intergenic |
| CAGAAGGCGTGGGAGGCTTT+TGG | 0.287795 | 4_1:+39788114 | Msa0547080:CDS |
| ATCAATATCTCTTCAATTGC+TGG | 0.294772 | 4_1:+39789749 | Msa0547080:CDS |
| ACAGGTGATGGCATTGGAAT+TGG | 0.311829 | 4_1:+39790766 | Msa0547080:intron |
| GTGTTTAAAACAAACATAAA+TGG | 0.315012 | 4_1:+39789662 | Msa0547080:CDS |
| AATGGGAAATGGGAAATTTC+GGG | 0.316857 | 4_1:-39787758 | None:intergenic |
| ATTCATAGTGAGGAATAAAT+AGG | 0.326565 | 4_1:-39791027 | None:intergenic |
| AAATGGGAAATGGGAAATTT+CGG | 0.331675 | 4_1:-39787759 | None:intergenic |
| TGAATTTACTTACAACTTCA+TGG | 0.335158 | 4_1:+39787688 | Msa0547080:five_prime_UTR |
| CTTGTCACCGGCGCATCAGC+AGG | 0.346471 | 4_1:+39787910 | Msa0547080:CDS |
| CAGGTGATGGCATTGGAATT+GGG | 0.357099 | 4_1:+39790767 | Msa0547080:intron |
| TTTATGATGATTTATGGAAA+TGG | 0.358402 | 4_1:-39787776 | None:intergenic |
| TTATGATGATTTATGGAAAT+GGG | 0.360560 | 4_1:-39787775 | None:intergenic |
| ACGTGATTTCTGCCTTGATC+TGG | 0.366903 | 4_1:+39787939 | Msa0547080:CDS |
| AAAATTTGATGAAGAAAGAT+TGG | 0.382710 | 4_1:+39790848 | Msa0547080:CDS |
| TGCCTTGATCTGGCTCGTGC+TGG | 0.384037 | 4_1:+39787949 | Msa0547080:CDS |
| ATCAATAATGCCGGTGTTAG+AGG | 0.395800 | 4_1:+39788153 | Msa0547080:CDS |
| GGTGACAAGGACAACTTTGC+CGG | 0.399560 | 4_1:-39787896 | None:intergenic |
| AACAGTGCCATTAAGAGAAT+GGG | 0.402159 | 4_1:+39790891 | Msa0547080:CDS |
| GATGCTGGTGCTACCTTACC+AGG | 0.410122 | 4_1:+39791000 | Msa0547080:CDS |
| TGATTTATGGAAATGGGAAA+TGG | 0.420633 | 4_1:-39787769 | None:intergenic |
| ATTACAATTGATGTATAAGA+TGG | 0.423704 | 4_1:+39791197 | Msa0547080:three_prime_UTR |
| CGGGCAATTGTCCCCTCTCT+AGG | 0.426091 | 4_1:-39789772 | None:intergenic |
| GAGCTTGATGTGGCGGCTGA+TGG | 0.434808 | 4_1:+39788069 | Msa0547080:CDS |
| GATTTATGGAAATGGGAAAT+GGG | 0.456699 | 4_1:-39787768 | None:intergenic |
| CGAGCAATTGATGTTAATGC+TGG | 0.468893 | 4_1:-39790925 | None:intergenic |
| ATTTCAGATTTGAAAAGTCC+TGG | 0.476294 | 4_1:-39790820 | None:intergenic |
| AAATGGGAAATTTCGGGGAA+TGG | 0.480008 | 4_1:-39787752 | None:intergenic |
| AATGAATGAATGTTGAGAAT+GGG | 0.486284 | 4_1:-39787801 | None:intergenic |
| TCTTAATGGCACTGTTCTCA+TGG | 0.487179 | 4_1:-39790884 | None:intergenic |
| GAACAGTGCCATTAAGAGAA+TGG | 0.491704 | 4_1:+39790890 | Msa0547080:CDS |
| CTTGATGTGGCGGCTGATGG+TGG | 0.496263 | 4_1:+39788072 | Msa0547080:CDS |
| GATGATTGATTTGGTGTTGG+TGG | 0.496340 | 4_1:-39787717 | None:intergenic |
| GTGGTGAAGGATGATTGATT+TGG | 0.498870 | 4_1:-39787726 | None:intergenic |
| AAGGATGATTGATTTGGTGT+TGG | 0.500947 | 4_1:-39787720 | None:intergenic |
| AATATATTTATTGCTGATGC+TGG | 0.507646 | 4_1:+39790985 | Msa0547080:CDS |
| GGCAAAGTTGTCCTTGTCAC+CGG | 0.508416 | 4_1:+39787898 | Msa0547080:CDS |
| TCCGATCCCTGCTGATGCGC+CGG | 0.512043 | 4_1:-39787917 | None:intergenic |
| TCTCATGGTTACTAATCTAC+AGG | 0.517926 | 4_1:+39791138 | Msa0547080:three_prime_UTR |
| GAGGAATAAATAGGAAAGCC+TGG | 0.518416 | 4_1:-39791018 | None:intergenic |
| AAAATATGATGAGTGAAACT+TGG | 0.523161 | 4_1:+39791079 | Msa0547080:three_prime_UTR |
| TGGAATTGACTGAGGAGGAA+TGG | 0.528283 | 4_1:+39789633 | Msa0547080:CDS |
| CTGCTGATGCGCCGGTGACA+AGG | 0.532114 | 4_1:-39787909 | None:intergenic |
| TTCAATTGCTGGCCTAGAGA+GGG | 0.532544 | 4_1:+39789760 | Msa0547080:CDS |
| AGAAGTATGTACAGAAGGCG+TGG | 0.537432 | 4_1:+39788103 | Msa0547080:CDS |
| AAATGAATGAATGTTGAGAA+TGG | 0.539277 | 4_1:-39787802 | None:intergenic |
| TATAGAGAAGTATGTACAGA+AGG | 0.544134 | 4_1:+39788098 | Msa0547080:CDS |
| CGACAAATATCATGTTGTTG+AGG | 0.544808 | 4_1:-39787598 | None:intergenic |
| GCATATGCTTGTTCAAAGGC+AGG | 0.550266 | 4_1:+39789803 | Msa0547080:CDS |
| AAGTCTCCGTGCAGTTGCGG+TGG | 0.551617 | 4_1:+39788047 | Msa0547080:CDS |
| CTTCAATTGCTGGCCTAGAG+AGG | 0.552027 | 4_1:+39789759 | Msa0547080:CDS |
| AAACAAACATAAATGGTACA+TGG | 0.552103 | 4_1:+39789669 | Msa0547080:CDS |
| AGGAAATGTGAGTTCACCCT+TGG | 0.553066 | 4_1:+39789613 | Msa0547080:intron |
| GATTCTTCTGAATATGTGAC+GGG | 0.553262 | 4_1:+39790961 | Msa0547080:CDS |
| AGGTGATGGCATTGGAATTG+GGG | 0.555069 | 4_1:+39790768 | Msa0547080:intron |
| CTAGAGAGGGGACAATTGCC+CGG | 0.556034 | 4_1:+39789773 | Msa0547080:CDS |
| CGGGGAATGGAATGTGGTGA+AGG | 0.556548 | 4_1:-39787739 | None:intergenic |
| ATAAATAGGAAAGCCTGGTA+AGG | 0.560891 | 4_1:-39791013 | None:intergenic |
| TTCCTCCTCAGTCAATTCCA+AGG | 0.561664 | 4_1:-39789630 | None:intergenic |
| AAACATAAATGGTACATGGT+TGG | 0.562444 | 4_1:+39789673 | Msa0547080:CDS |
| ATTCAAATTACCTCTAACAC+CGG | 0.563895 | 4_1:-39788163 | None:intergenic |
| ATCCAGCACGAGCCAGATCA+AGG | 0.564390 | 4_1:-39787951 | None:intergenic |
| TGATTCTTCTGAATATGTGA+CGG | 0.567873 | 4_1:+39790960 | Msa0547080:CDS |
| CAAGCATATGCAGTTCCACC+GGG | 0.568839 | 4_1:-39789791 | None:intergenic |
| CATGAGTTAAGATGTTCTCA+TGG | 0.569138 | 4_1:+39791123 | Msa0547080:three_prime_UTR |
| GAACCATGGCACGACCTCGC+CGG | 0.574081 | 4_1:+39787877 | Msa0547080:CDS |
| TTACAATTGATGTATAAGAT+GGG | 0.574782 | 4_1:+39791198 | Msa0547080:three_prime_UTR |
| GAAGTATGTACAGAAGGCGT+GGG | 0.575488 | 4_1:+39788104 | Msa0547080:CDS |
| GATGAAATCAATGGAAAGGA+GGG | 0.578092 | 4_1:+39788024 | Msa0547080:CDS |
| TGATATGATACACTTTGCAA+TGG | 0.578298 | 4_1:+39791053 | Msa0547080:three_prime_UTR |
| TTGCCGGCGAGGTCGTGCCA+TGG | 0.580382 | 4_1:-39787880 | None:intergenic |
| AAATTTCGGGGAATGGAATG+TGG | 0.581109 | 4_1:-39787745 | None:intergenic |
| GGGAAGTCTCCGTGCAGTTG+CGG | 0.586746 | 4_1:+39788044 | Msa0547080:CDS |
| TGCGGTGGAGCTTGATGTGG+CGG | 0.592898 | 4_1:+39788062 | Msa0547080:CDS |
| AACTCATGCGTGATTCAAAG+AGG | 0.594350 | 4_1:+39789714 | Msa0547080:CDS |
| CAAGGACAACTTTGCCGGCG+AGG | 0.595256 | 4_1:-39787891 | None:intergenic |
| AAATTGACAGGTGATGGCAT+TGG | 0.597713 | 4_1:+39790760 | Msa0547080:intron |
| ATGAATGAATGTTGAGAATG+GGG | 0.597936 | 4_1:-39787800 | None:intergenic |
| ACCGGCGCATCAGCAGGGAT+CGG | 0.598824 | 4_1:+39787916 | Msa0547080:CDS |
| ACAAGCATATGCAGTTCCAC+CGG | 0.601410 | 4_1:-39789792 | None:intergenic |
| TCCTCCTCAGTCAATTCCAA+GGG | 0.607693 | 4_1:-39789629 | None:intergenic |
| CATATCAAGTATTCATAGTG+AGG | 0.608610 | 4_1:-39791037 | None:intergenic |
| GTATGTCTTAAAAGACAAGA+AGG | 0.608944 | 4_1:-39787657 | None:intergenic |
| TGGCAAAGCAACTAGAACCA+TGG | 0.609409 | 4_1:+39787863 | Msa0547080:CDS |
| AACTGCATATGCTTGTTCAA+AGG | 0.614285 | 4_1:+39789799 | Msa0547080:CDS |
| TCATTGTGTGATGAAATCAA+TGG | 0.617419 | 4_1:+39788015 | Msa0547080:CDS |
| ACCCTTGGAATTGACTGAGG+AGG | 0.618106 | 4_1:+39789628 | Msa0547080:CDS |
| TGATGAAATCAATGGAAAGG+AGG | 0.620320 | 4_1:+39788023 | Msa0547080:CDS |
| ATGCGTGATTCAAAGAGGAA+AGG | 0.620679 | 4_1:+39789719 | Msa0547080:CDS |
| TTGTCACCGGCGCATCAGCA+GGG | 0.621162 | 4_1:+39787911 | Msa0547080:CDS |
| GTATGTACAGAAGGCGTGGG+AGG | 0.634153 | 4_1:+39788107 | Msa0547080:CDS |
| TCAATTGCTGGCCTAGAGAG+GGG | 0.637165 | 4_1:+39789761 | Msa0547080:CDS |
| CAAGCTCCACCGCAACTGCA+CGG | 0.638345 | 4_1:-39788053 | None:intergenic |
| AGTTGCGGTGGAGCTTGATG+TGG | 0.644706 | 4_1:+39788059 | Msa0547080:CDS |
| GTGTGATGAAATCAATGGAA+AGG | 0.648715 | 4_1:+39788020 | Msa0547080:CDS |
| AGAGTGAATTCAATATCACC+AGG | 0.649340 | 4_1:+39790802 | Msa0547080:CDS |
| TCTTCAAAATCAATTCAACA+TGG | 0.652833 | 4_1:+39787843 | Msa0547080:exon |
| TTCACCCTTGGAATTGACTG+AGG | 0.656324 | 4_1:+39789625 | Msa0547080:CDS |
| GATGCGTTGATCAATAATGC+CGG | 0.659297 | 4_1:+39788144 | Msa0547080:CDS |
| ACAGTGCCATTAAGAGAATG+GGG | 0.679803 | 4_1:+39790892 | Msa0547080:CDS |
| AATTATATATAAGAGCTCAA+CGG | 0.689781 | 4_1:+39791292 | Msa0547080:three_prime_UTR |
| GAGAGGGGACAATTGCCCGG+TGG | 0.742879 | 4_1:+39789776 | Msa0547080:CDS |
| ATGGGAAATGGGAAATTTCG+GGG | 0.745257 | 4_1:-39787757 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATAATTTTTTAAAATATA+AGG | + | chr4_1:39789415-39789434 | Msa0547080:intron | 0.0% |
| !!! | AAAACTAATACTATTTTTTA+AGG | - | chr4_1:39788810-39788829 | None:intergenic | 10.0% |
| !!! | ATTATAGTAGTATATATTTT+TGG | - | chr4_1:39789197-39789216 | None:intergenic | 10.0% |
| !! | AAAAAGACTATATTAATAAA+AGG | - | chr4_1:39790192-39790211 | None:intergenic | 10.0% |
| !! | GTCTAATACTTATAATATAA+GGG | - | chr4_1:39788963-39788982 | None:intergenic | 15.0% |
| !! | AGTCTAATACTTATAATATA+AGG | - | chr4_1:39788964-39788983 | None:intergenic | 15.0% |
| !! | TGTATGAAAAAAATATTGTA+AGG | + | chr4_1:39789273-39789292 | Msa0547080:intron | 15.0% |
| !!! | TTAATCTTATACTTTTATCT+TGG | - | chr4_1:39789353-39789372 | None:intergenic | 15.0% |
| !!! | TTAATAATTTTAAGTGTATG+TGG | - | chr4_1:39789555-39789574 | None:intergenic | 15.0% |
| !!! | TTATAAATGATGAGATTTTA+AGG | + | chr4_1:39790126-39790145 | Msa0547080:intron | 15.0% |
| !!! | TCACTTTTCTTATAATAATT+CGG | + | chr4_1:39790297-39790316 | Msa0547080:intron | 15.0% |
| !! | TGTGAATATTCATAATTAAA+AGG | + | chr4_1:39790496-39790515 | Msa0547080:intron | 15.0% |
| !! | GTGAATATTCATAATTAAAA+GGG | + | chr4_1:39790497-39790516 | Msa0547080:intron | 15.0% |
| !!! | TTTTTGTAATAAAAATTGAC+AGG | + | chr4_1:39790748-39790767 | Msa0547080:intron | 15.0% |
| !! | TTATGATGATTTATGGAAAT+GGG | - | chr4_1:39787778-39787797 | None:intergenic | 20.0% |
| !! | TTTATGATGATTTATGGAAA+TGG | - | chr4_1:39787779-39787798 | None:intergenic | 20.0% |
| !! | ACTGATACATATAATTATAC+CGG | + | chr4_1:39788255-39788274 | Msa0547080:intron | 20.0% |
| !!! | AAGGTATTAAAGTGAAATAT+TGG | - | chr4_1:39788791-39788810 | None:intergenic | 20.0% |
| !!! | ATTTTAAACATTAGACACTT+TGG | + | chr4_1:39788905-39788924 | Msa0547080:intron | 20.0% |
| !! | TAGCATGTATATTTACAAAA+AGG | + | chr4_1:39789003-39789022 | Msa0547080:intron | 20.0% |
| !!! | GTGTTTAAAACAAACATAAA+TGG | + | chr4_1:39789662-39789681 | Msa0547080:CDS | 20.0% |
| !! | CTTGTGTAAATAATATGATA+AGG | + | chr4_1:39789948-39789967 | Msa0547080:intron | 20.0% |
| !!! | TTTTCTTATAATAATTCGGA+TGG | + | chr4_1:39790301-39790320 | Msa0547080:intron | 20.0% |
| !!! | GATGTTTTTGTCTTATAATA+AGG | + | chr4_1:39790341-39790360 | Msa0547080:intron | 20.0% |
| !!! | TTCTGACACATTATTTTAAT+GGG | - | chr4_1:39790688-39790707 | None:intergenic | 20.0% |
| !! | AAAATTTGATGAAGAAAGAT+TGG | + | chr4_1:39790848-39790867 | Msa0547080:CDS | 20.0% |
| !! | ATTACAATTGATGTATAAGA+TGG | + | chr4_1:39791197-39791216 | Msa0547080:three_prime_UTR | 20.0% |
| !! | TTACAATTGATGTATAAGAT+GGG | + | chr4_1:39791198-39791217 | Msa0547080:three_prime_UTR | 20.0% |
| !!! | TGAGAATTTTTGAAAAGAAA+TGG | + | chr4_1:39791231-39791250 | Msa0547080:three_prime_UTR | 20.0% |
| ! | TGAATTTACTTACAACTTCA+TGG | + | chr4_1:39787688-39787707 | Msa0547080:five_prime_UTR | 25.0% |
| ! | AATGAATGAATGTTGAGAAT+GGG | - | chr4_1:39787804-39787823 | None:intergenic | 25.0% |
| ! | AAATGAATGAATGTTGAGAA+TGG | - | chr4_1:39787805-39787824 | None:intergenic | 25.0% |
| ! | TCTTCAAAATCAATTCAACA+TGG | + | chr4_1:39787843-39787862 | Msa0547080:exon | 25.0% |
| ! | TTCGAGAAAATCATATAATC+CGG | - | chr4_1:39788277-39788296 | None:intergenic | 25.0% |
| !!! | TTGATTCAAAAAGTTGATGA+TGG | + | chr4_1:39788494-39788513 | Msa0547080:intron | 25.0% |
| ! | ATGATTTATTGTTTGTGTGA+AGG | + | chr4_1:39788546-39788565 | Msa0547080:intron | 25.0% |
| ! | TATACATGCTAGTAACTTAA+GGG | - | chr4_1:39788994-39789013 | None:intergenic | 25.0% |
| ! | ATATACATGCTAGTAACTTA+AGG | - | chr4_1:39788995-39789014 | None:intergenic | 25.0% |
| ! | TTGATCCCATTAGAAAATAT+TGG | - | chr4_1:39789071-39789090 | None:intergenic | 25.0% |
| ! | TATATAAAGATTGACTGCTT+TGG | + | chr4_1:39789510-39789529 | Msa0547080:intron | 25.0% |
| ! | AAACAAACATAAATGGTACA+TGG | + | chr4_1:39789669-39789688 | Msa0547080:CDS | 25.0% |
| !!! | CTTTTGCTGTAACAAAAATA+TGG | + | chr4_1:39790094-39790113 | Msa0547080:intron | 25.0% |
| ! | TCTTATAATAAGGATCAAGA+AGG | + | chr4_1:39790351-39790370 | Msa0547080:intron | 25.0% |
| !!! | GTTCTGACACATTATTTTAA+TGG | - | chr4_1:39790689-39790708 | None:intergenic | 25.0% |
| ! | TAATAAAAATTGACAGGTGA+TGG | + | chr4_1:39790754-39790773 | Msa0547080:intron | 25.0% |
| ! | AATATATTTATTGCTGATGC+TGG | + | chr4_1:39790985-39791004 | Msa0547080:CDS | 25.0% |
| ! | ATTCATAGTGAGGAATAAAT+AGG | - | chr4_1:39791030-39791049 | None:intergenic | 25.0% |
| ! | AAAATATGATGAGTGAAACT+TGG | + | chr4_1:39791079-39791098 | Msa0547080:three_prime_UTR | 25.0% |
| !!! | GTAGGATCAATTTTTGAGTA+AGG | + | chr4_1:39787558-39787577 | Msa0547080:five_prime_UTR | 30.0% |
| GTATGTCTTAAAAGACAAGA+AGG | - | chr4_1:39787660-39787679 | None:intergenic | 30.0% | |
| AAATGGGAAATGGGAAATTT+CGG | - | chr4_1:39787762-39787781 | None:intergenic | 30.0% | |
| GATTTATGGAAATGGGAAAT+GGG | - | chr4_1:39787771-39787790 | None:intergenic | 30.0% | |
| TGATTTATGGAAATGGGAAA+TGG | - | chr4_1:39787772-39787791 | None:intergenic | 30.0% | |
| !! | TGGGGTTTTATGATGATTTA+TGG | - | chr4_1:39787785-39787804 | None:intergenic | 30.0% |
| ATGAATGAATGTTGAGAATG+GGG | - | chr4_1:39787803-39787822 | None:intergenic | 30.0% | |
| TCATTGTGTGATGAAATCAA+TGG | + | chr4_1:39788015-39788034 | Msa0547080:CDS | 30.0% | |
| ! | TATAGAGAAGTATGTACAGA+AGG | + | chr4_1:39788098-39788117 | Msa0547080:CDS | 30.0% |
| ATTCAAATTACCTCTAACAC+CGG | - | chr4_1:39788166-39788185 | None:intergenic | 30.0% | |
| ACGTTTAAATCTACCAAGTA+CGG | + | chr4_1:39788190-39788209 | Msa0547080:intron | 30.0% | |
| ! | ATCGTTCTTTATTTGAGATG+TGG | + | chr4_1:39788570-39788589 | Msa0547080:intron | 30.0% |
| GTCTAACATTTACAACTTGA+TGG | + | chr4_1:39789034-39789053 | Msa0547080:intron | 30.0% | |
| TTACAACTTGATGGAACTAA+AGG | + | chr4_1:39789043-39789062 | Msa0547080:intron | 30.0% | |
| TACAACTTGATGGAACTAAA+GGG | + | chr4_1:39789044-39789063 | Msa0547080:intron | 30.0% | |
| ! | AAGGGTCCAATATTTTCTAA+TGG | + | chr4_1:39789062-39789081 | Msa0547080:intron | 30.0% |
| ! | AGGGTCCAATATTTTCTAAT+GGG | + | chr4_1:39789063-39789082 | Msa0547080:intron | 30.0% |
| !! | TTTTAAGTGTATGTGGTCAA+AGG | - | chr4_1:39789548-39789567 | None:intergenic | 30.0% |
| GATTTATTGTTGTGTTGTGT+AGG | + | chr4_1:39789593-39789612 | Msa0547080:intron | 30.0% | |
| AAACATAAATGGTACATGGT+TGG | + | chr4_1:39789673-39789692 | Msa0547080:CDS | 30.0% | |
| ATCAATATCTCTTCAATTGC+TGG | + | chr4_1:39789749-39789768 | Msa0547080:CDS | 30.0% | |
| !! | TTGTTTGTTTTCATGTGACT+TGG | + | chr4_1:39789862-39789881 | Msa0547080:intron | 30.0% |
| ! | AGAAATTCTTTTCAAACCGT+AGG | + | chr4_1:39789995-39790014 | Msa0547080:intron | 30.0% |
| ! | CATACAAGAGCATAACATAA+TGG | - | chr4_1:39790067-39790086 | None:intergenic | 30.0% |
| !! | GATGGAGTATTTGTTTTCTT+TGG | + | chr4_1:39790319-39790338 | Msa0547080:intron | 30.0% |
| ! | TTTTGCTAACAATGTCCTTA+GGG | + | chr4_1:39790520-39790539 | Msa0547080:intron | 30.0% |
| TTATCTTAACTAATGCCCTA+AGG | - | chr4_1:39790538-39790557 | None:intergenic | 30.0% | |
| ! | TTGTTCTTTTCAATGTCTTC+AGG | + | chr4_1:39790646-39790665 | Msa0547080:intron | 30.0% |
| AAAGACATACTGACATTGTT+TGG | + | chr4_1:39790723-39790742 | Msa0547080:intron | 30.0% | |
| ATTTCAGATTTGAAAAGTCC+TGG | - | chr4_1:39790823-39790842 | None:intergenic | 30.0% | |
| TGATTCTTCTGAATATGTGA+CGG | + | chr4_1:39790960-39790979 | Msa0547080:CDS | 30.0% | |
| CATATCAAGTATTCATAGTG+AGG | - | chr4_1:39791040-39791059 | None:intergenic | 30.0% | |
| TGATATGATACACTTTGCAA+TGG | + | chr4_1:39791053-39791072 | Msa0547080:three_prime_UTR | 30.0% | |
| CGACAAATATCATGTTGTTG+AGG | - | chr4_1:39787601-39787620 | None:intergenic | 35.0% | |
| !! | AAGGATGATTGATTTGGTGT+TGG | - | chr4_1:39787723-39787742 | None:intergenic | 35.0% |
| AATGGGAAATGGGAAATTTC+GGG | - | chr4_1:39787761-39787780 | None:intergenic | 35.0% | |
| GTGTGATGAAATCAATGGAA+AGG | + | chr4_1:39788020-39788039 | Msa0547080:CDS | 35.0% | |
| TGATGAAATCAATGGAAAGG+AGG | + | chr4_1:39788023-39788042 | Msa0547080:CDS | 35.0% | |
| GATGAAATCAATGGAAAGGA+GGG | + | chr4_1:39788024-39788043 | Msa0547080:CDS | 35.0% | |
| TACAGTTATTAGACACGACA+TGG | - | chr4_1:39788327-39788346 | None:intergenic | 35.0% | |
| AAGCGGTGCAATATTGAAAA+GGG | + | chr4_1:39788597-39788616 | Msa0547080:intron | 35.0% | |
| ! | GAGTTTTGCTACATATGTAG+CGG | - | chr4_1:39788733-39788752 | None:intergenic | 35.0% |
| ATTGTGATTCCTTACGCTAT+CGG | + | chr4_1:39788830-39788849 | Msa0547080:intron | 35.0% | |
| !! | AATGGGATCAAAAGCACTTA+TGG | + | chr4_1:39789080-39789099 | Msa0547080:intron | 35.0% |
| !! | ATGGGATCAAAAGCACTTAT+GGG | + | chr4_1:39789081-39789100 | Msa0547080:intron | 35.0% |
| ACTCAGAGATCAAAGTGAAA+CGG | + | chr4_1:39789126-39789145 | Msa0547080:intron | 35.0% | |
| ! | AGCACTTTTCTTCGAATGAT+TGG | + | chr4_1:39789219-39789238 | Msa0547080:intron | 35.0% |
| TTGGATGATATAGCTTATGG+TGG | - | chr4_1:39789459-39789478 | None:intergenic | 35.0% | |
| CACTTGGATGATATAGCTTA+TGG | - | chr4_1:39789462-39789481 | None:intergenic | 35.0% | |
| ! | ATTAGTCACTTTCAGTCACT+TGG | - | chr4_1:39789478-39789497 | None:intergenic | 35.0% |
| AACTGCATATGCTTGTTCAA+AGG | + | chr4_1:39789799-39789818 | Msa0547080:CDS | 35.0% | |
| GTCACATGATTGAAATGTCA+CGG | + | chr4_1:39789904-39789923 | Msa0547080:intron | 35.0% | |
| TCACATGATTGAAATGTCAC+GGG | + | chr4_1:39789905-39789924 | Msa0547080:intron | 35.0% | |
| ! | ACAAGAGCATAACATAATGG+CGG | - | chr4_1:39790064-39790083 | None:intergenic | 35.0% |
| ! | GTTTTGCTAACAATGTCCTT+AGG | + | chr4_1:39790519-39790538 | Msa0547080:intron | 35.0% |
| AGAGTGAATTCAATATCACC+AGG | + | chr4_1:39790802-39790821 | Msa0547080:CDS | 35.0% | |
| ! | AACAGTGCCATTAAGAGAAT+GGG | + | chr4_1:39790891-39790910 | Msa0547080:CDS | 35.0% |
| GATTCTTCTGAATATGTGAC+GGG | + | chr4_1:39790961-39790980 | Msa0547080:CDS | 35.0% | |
| ATAAATAGGAAAGCCTGGTA+AGG | - | chr4_1:39791016-39791035 | None:intergenic | 35.0% | |
| CATGAGTTAAGATGTTCTCA+TGG | + | chr4_1:39791123-39791142 | Msa0547080:three_prime_UTR | 35.0% | |
| TCTCATGGTTACTAATCTAC+AGG | + | chr4_1:39791138-39791157 | Msa0547080:three_prime_UTR | 35.0% | |
| !! | GATGATTGATTTGGTGTTGG+TGG | - | chr4_1:39787720-39787739 | None:intergenic | 40.0% |
| GTGGTGAAGGATGATTGATT+TGG | - | chr4_1:39787729-39787748 | None:intergenic | 40.0% | |
| AAATTTCGGGGAATGGAATG+TGG | - | chr4_1:39787748-39787767 | None:intergenic | 40.0% | |
| AAATGGGAAATTTCGGGGAA+TGG | - | chr4_1:39787755-39787774 | None:intergenic | 40.0% | |
| ATGGGAAATGGGAAATTTCG+GGG | - | chr4_1:39787760-39787779 | None:intergenic | 40.0% | |
| ! | GATGCGTTGATCAATAATGC+CGG | + | chr4_1:39788144-39788163 | Msa0547080:CDS | 40.0% |
| ! | ATCAATAATGCCGGTGTTAG+AGG | + | chr4_1:39788153-39788172 | Msa0547080:CDS | 40.0% |
| !! | ATCTAAAGAGTGTCCGTACT+TGG | - | chr4_1:39788206-39788225 | None:intergenic | 40.0% |
| ! | ATTTGAGATGTGGTACCAAG+CGG | + | chr4_1:39788580-39788599 | Msa0547080:intron | 40.0% |
| ! | CTTTTCAATATTGCACCGCT+TGG | - | chr4_1:39788598-39788617 | None:intergenic | 40.0% |
| CAAGCGGTGCAATATTGAAA+AGG | + | chr4_1:39788596-39788615 | Msa0547080:intron | 40.0% | |
| !! | CTATCGGTGTTGAACACTTT+GGG | + | chr4_1:39788846-39788865 | Msa0547080:intron | 40.0% |
| AACTCATGCGTGATTCAAAG+AGG | + | chr4_1:39789714-39789733 | Msa0547080:CDS | 40.0% | |
| ATGCGTGATTCAAAGAGGAA+AGG | + | chr4_1:39789719-39789738 | Msa0547080:CDS | 40.0% | |
| AGGTGTCAATATGCTCACAA+AGG | + | chr4_1:39789823-39789842 | Msa0547080:intron | 40.0% | |
| TCATGTGACGATAACTTTCC+AGG | - | chr4_1:39789893-39789912 | None:intergenic | 40.0% | |
| TCCTAAAATTAAAGCTCCGC+AGG | - | chr4_1:39790021-39790040 | None:intergenic | 40.0% | |
| ! | AAATTGACAGGTGATGGCAT+TGG | + | chr4_1:39790760-39790779 | Msa0547080:intron | 40.0% |
| TCTTAATGGCACTGTTCTCA+TGG | - | chr4_1:39790887-39790906 | None:intergenic | 40.0% | |
| ! | GAACAGTGCCATTAAGAGAA+TGG | + | chr4_1:39790890-39790909 | Msa0547080:CDS | 40.0% |
| ! | ACAGTGCCATTAAGAGAATG+GGG | + | chr4_1:39790892-39790911 | Msa0547080:CDS | 40.0% |
| CGAGCAATTGATGTTAATGC+TGG | - | chr4_1:39790928-39790947 | None:intergenic | 40.0% | |
| GAGGAATAAATAGGAAAGCC+TGG | - | chr4_1:39791021-39791040 | None:intergenic | 40.0% | |
| TGGCAAAGCAACTAGAACCA+TGG | + | chr4_1:39787863-39787882 | Msa0547080:CDS | 45.0% | |
| ACGTGATTTCTGCCTTGATC+TGG | + | chr4_1:39787939-39787958 | Msa0547080:CDS | 45.0% | |
| ! | TGCTGGATGTTTTGTGATCG+CGG | + | chr4_1:39787966-39787985 | Msa0547080:CDS | 45.0% |
| ! | AGAAGTATGTACAGAAGGCG+TGG | + | chr4_1:39788103-39788122 | Msa0547080:CDS | 45.0% |
| ! | GAAGTATGTACAGAAGGCGT+GGG | + | chr4_1:39788104-39788123 | Msa0547080:CDS | 45.0% |
| TGTTCAACACCGATAGCGTA+AGG | - | chr4_1:39788842-39788861 | None:intergenic | 45.0% | |
| !! | GCTATCGGTGTTGAACACTT+TGG | + | chr4_1:39788845-39788864 | Msa0547080:intron | 45.0% |
| AGGAAATGTGAGTTCACCCT+TGG | + | chr4_1:39789613-39789632 | Msa0547080:intron | 45.0% | |
| TTCACCCTTGGAATTGACTG+AGG | + | chr4_1:39789625-39789644 | Msa0547080:CDS | 45.0% | |
| TCCTCCTCAGTCAATTCCAA+GGG | - | chr4_1:39789632-39789651 | None:intergenic | 45.0% | |
| TTCCTCCTCAGTCAATTCCA+AGG | - | chr4_1:39789633-39789652 | None:intergenic | 45.0% | |
| TGGAATTGACTGAGGAGGAA+TGG | + | chr4_1:39789633-39789652 | Msa0547080:CDS | 45.0% | |
| ! | TTCAATTGCTGGCCTAGAGA+GGG | + | chr4_1:39789760-39789779 | Msa0547080:CDS | 45.0% |
| ACAAGCATATGCAGTTCCAC+CGG | - | chr4_1:39789795-39789814 | None:intergenic | 45.0% | |
| GCATATGCTTGTTCAAAGGC+AGG | + | chr4_1:39789803-39789822 | Msa0547080:CDS | 45.0% | |
| !! | GCCTGCGGAGCTTTAATTTT+AGG | + | chr4_1:39790017-39790036 | Msa0547080:intron | 45.0% |
| AGAGCATAACATAATGGCGG+AGG | - | chr4_1:39790061-39790080 | None:intergenic | 45.0% | |
| ! | ACAGGTGATGGCATTGGAAT+TGG | + | chr4_1:39790766-39790785 | Msa0547080:intron | 45.0% |
| ! | CAGGTGATGGCATTGGAATT+GGG | + | chr4_1:39790767-39790786 | Msa0547080:intron | 45.0% |
| ! | AGGTGATGGCATTGGAATTG+GGG | + | chr4_1:39790768-39790787 | Msa0547080:intron | 45.0% |
| ! | GAAGTGCCCCATTCTCTTAA+TGG | - | chr4_1:39790901-39790920 | None:intergenic | 45.0% |
| GGTGACAAGGACAACTTTGC+CGG | - | chr4_1:39787899-39787918 | None:intergenic | 50.0% | |
| GGCAAAGTTGTCCTTGTCAC+CGG | + | chr4_1:39787898-39787917 | Msa0547080:CDS | 50.0% | |
| ACCCTTGGAATTGACTGAGG+AGG | + | chr4_1:39789628-39789647 | Msa0547080:CDS | 50.0% | |
| ! | CTTCAATTGCTGGCCTAGAG+AGG | + | chr4_1:39789759-39789778 | Msa0547080:CDS | 50.0% |
| ! | TCAATTGCTGGCCTAGAGAG+GGG | + | chr4_1:39789761-39789780 | Msa0547080:CDS | 50.0% |
| CAAGCATATGCAGTTCCACC+GGG | - | chr4_1:39789794-39789813 | None:intergenic | 50.0% | |
| !! | TCATGTGACTTGGTGCAACC+TGG | + | chr4_1:39789872-39789891 | Msa0547080:intron | 50.0% |
| ! | CTTTTCAAACCGTAGGCCTG+CGG | + | chr4_1:39790002-39790021 | Msa0547080:intron | 50.0% |
| ATTAAAGCTCCGCAGGCCTA+CGG | - | chr4_1:39790014-39790033 | None:intergenic | 50.0% | |
| CGGGGAATGGAATGTGGTGA+AGG | - | chr4_1:39787742-39787761 | None:intergenic | 55.0% | |
| ATCCAGCACGAGCCAGATCA+AGG | - | chr4_1:39787954-39787973 | None:intergenic | 55.0% | |
| AGTTGCGGTGGAGCTTGATG+TGG | + | chr4_1:39788059-39788078 | Msa0547080:CDS | 55.0% | |
| ! | GTATGTACAGAAGGCGTGGG+AGG | + | chr4_1:39788107-39788126 | Msa0547080:CDS | 55.0% |
| CTAGAGAGGGGACAATTGCC+CGG | + | chr4_1:39789773-39789792 | Msa0547080:CDS | 55.0% | |
| !! | GATGCTGGTGCTACCTTACC+AGG | + | chr4_1:39791000-39791019 | Msa0547080:CDS | 55.0% |
| CAAGGACAACTTTGCCGGCG+AGG | - | chr4_1:39787894-39787913 | None:intergenic | 60.0% | |
| TTGTCACCGGCGCATCAGCA+GGG | + | chr4_1:39787911-39787930 | Msa0547080:CDS | 60.0% | |
| ! | TGCCTTGATCTGGCTCGTGC+TGG | + | chr4_1:39787949-39787968 | Msa0547080:CDS | 60.0% |
| GGGAAGTCTCCGTGCAGTTG+CGG | + | chr4_1:39788044-39788063 | Msa0547080:CDS | 60.0% | |
| AAGTCTCCGTGCAGTTGCGG+TGG | + | chr4_1:39788047-39788066 | Msa0547080:CDS | 60.0% | |
| CAAGCTCCACCGCAACTGCA+CGG | - | chr4_1:39788056-39788075 | None:intergenic | 60.0% | |
| TGCGGTGGAGCTTGATGTGG+CGG | + | chr4_1:39788062-39788081 | Msa0547080:CDS | 60.0% | |
| GAGCTTGATGTGGCGGCTGA+TGG | + | chr4_1:39788069-39788088 | Msa0547080:CDS | 60.0% | |
| CTTGATGTGGCGGCTGATGG+TGG | + | chr4_1:39788072-39788091 | Msa0547080:CDS | 60.0% | |
| !! | CAGAAGGCGTGGGAGGCTTT+TGG | + | chr4_1:39788114-39788133 | Msa0547080:CDS | 60.0% |
| CGGGCAATTGTCCCCTCTCT+AGG | - | chr4_1:39789775-39789794 | None:intergenic | 60.0% | |
| GAACCATGGCACGACCTCGC+CGG | + | chr4_1:39787877-39787896 | Msa0547080:CDS | 65.0% | |
| ! | CTGCTGATGCGCCGGTGACA+AGG | - | chr4_1:39787912-39787931 | None:intergenic | 65.0% |
| CTTGTCACCGGCGCATCAGC+AGG | + | chr4_1:39787910-39787929 | Msa0547080:CDS | 65.0% | |
| ACCGGCGCATCAGCAGGGAT+CGG | + | chr4_1:39787916-39787935 | Msa0547080:CDS | 65.0% | |
| TCCGATCCCTGCTGATGCGC+CGG | - | chr4_1:39787920-39787939 | None:intergenic | 65.0% | |
| GAGAGGGGACAATTGCCCGG+TGG | + | chr4_1:39789776-39789795 | Msa0547080:CDS | 65.0% | |
| TTGCCGGCGAGGTCGTGCCA+TGG | - | chr4_1:39787883-39787902 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 39787558 | 39791313 | 39787558 | ID=Msa0547080;Name=Msa0547080 |
| chr4_1 | mRNA | 39787558 | 39791313 | 39787558 | ID=Msa0547080-mRNA-1;Parent=Msa0547080;Name=Msa0547080-mRNA-1;_AED=0.03;_eAED=0.03;_QI=304|0.5|0.66|1|1|1|3|266|266 |
| chr4_1 | exon | 39787558 | 39788174 | 39787558 | ID=Msa0547080-mRNA-1:exon:10106;Parent=Msa0547080-mRNA-1 |
| chr4_1 | exon | 39789615 | 39789824 | 39789615 | ID=Msa0547080-mRNA-1:exon:10107;Parent=Msa0547080-mRNA-1 |
| chr4_1 | exon | 39790770 | 39791313 | 39790770 | ID=Msa0547080-mRNA-1:exon:10108;Parent=Msa0547080-mRNA-1 |
| chr4_1 | five_prime_UTR | 39787558 | 39787861 | 39787558 | ID=Msa0547080-mRNA-1:five_prime_utr;Parent=Msa0547080-mRNA-1 |
| chr4_1 | CDS | 39787862 | 39788174 | 39787862 | ID=Msa0547080-mRNA-1:cds;Parent=Msa0547080-mRNA-1 |
| chr4_1 | CDS | 39789615 | 39789824 | 39789615 | ID=Msa0547080-mRNA-1:cds;Parent=Msa0547080-mRNA-1 |
| chr4_1 | CDS | 39790770 | 39791047 | 39790770 | ID=Msa0547080-mRNA-1:cds;Parent=Msa0547080-mRNA-1 |
| chr4_1 | three_prime_UTR | 39791048 | 39791313 | 39791048 | ID=Msa0547080-mRNA-1:three_prime_utr;Parent=Msa0547080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
