Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646720 | XP_003606934.1 | 92.424 | 330 | 25 | 0 | 1 | 330 | 1 | 330 | 0.0 | 636 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646720 | sp|O81355|PYRC5_PYRCO | 61.438 | 306 | 118 | 0 | 3 | 308 | 1 | 306 | 6.75e-142 | 406 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0107400 | Msa0646720 | 0.800464 | 1.423806e-48 | -8.615850e-47 |
| Msa0550390 | Msa0646720 | 0.848136 | 7.425838e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646720 | MtrunA17_Chr4g0035111 | 92.424 | 330 | 25 | 0 | 1 | 330 | 1 | 330 | 0.0 | 636 |
| Msa0646720 | MtrunA17_Chr4g0035131 | 63.385 | 325 | 118 | 1 | 1 | 324 | 38 | 362 | 1.58e-150 | 427 |
| Msa0646720 | MtrunA17_Chr3g0144701 | 62.903 | 310 | 113 | 1 | 1 | 308 | 1 | 310 | 2.53e-142 | 404 |
| Msa0646720 | MtrunA17_Chr3g0141691 | 58.306 | 307 | 126 | 1 | 1 | 307 | 1 | 305 | 1.86e-130 | 374 |
| Msa0646720 | MtrunA17_Chr3g0141681 | 58.117 | 308 | 127 | 1 | 3 | 308 | 1 | 308 | 1.52e-129 | 372 |
| Msa0646720 | MtrunA17_Chr5g0404471 | 58.667 | 300 | 124 | 0 | 7 | 306 | 6 | 305 | 2.06e-129 | 372 |
| Msa0646720 | MtrunA17_Chr5g0404481 | 49.527 | 317 | 148 | 3 | 3 | 308 | 1 | 316 | 2.22e-98 | 293 |
| Msa0646720 | MtrunA17_Chr5g0404511 | 49.211 | 317 | 149 | 3 | 3 | 308 | 1 | 316 | 5.12e-98 | 292 |
| Msa0646720 | MtrunA17_Chr4g0035121 | 40.594 | 303 | 178 | 1 | 7 | 307 | 4 | 306 | 6.36e-84 | 256 |
| Msa0646720 | MtrunA17_Chr8g0369391 | 42.020 | 307 | 171 | 3 | 7 | 307 | 4 | 309 | 2.04e-76 | 237 |
| Msa0646720 | MtrunA17_Chr3g0078901 | 39.073 | 302 | 178 | 4 | 8 | 308 | 7 | 303 | 6.23e-74 | 231 |
| Msa0646720 | MtrunA17_Chr5g0409641 | 40.065 | 307 | 176 | 3 | 7 | 307 | 4 | 308 | 9.95e-73 | 227 |
| Msa0646720 | MtrunA17_Chr5g0409651 | 40.881 | 318 | 158 | 7 | 7 | 307 | 4 | 308 | 1.88e-72 | 226 |
| Msa0646720 | MtrunA17_Chr3g0078831 | 38.264 | 311 | 176 | 5 | 4 | 308 | 3 | 303 | 2.76e-70 | 221 |
| Msa0646720 | MtrunA17_Chr1g0198771 | 34.106 | 302 | 196 | 2 | 8 | 307 | 15 | 315 | 6.03e-59 | 193 |
| Msa0646720 | MtrunA17_Chr3g0078941 | 34.804 | 204 | 118 | 4 | 106 | 304 | 12 | 205 | 2.83e-37 | 133 |
| Msa0646720 | MtrunA17_Chr3g0078951 | 48.039 | 102 | 49 | 3 | 8 | 108 | 7 | 105 | 2.23e-21 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646720 | AT4G39230.1 | 59.539 | 304 | 123 | 0 | 5 | 308 | 3 | 306 | 3.08e-130 | 374 |
| Msa0646720 | AT1G75280.1 | 60.265 | 302 | 117 | 2 | 7 | 306 | 6 | 306 | 5.73e-123 | 355 |
| Msa0646720 | AT1G75290.1 | 56.623 | 302 | 129 | 1 | 7 | 306 | 6 | 307 | 1.21e-119 | 347 |
| Msa0646720 | AT1G75290.2 | 56.623 | 302 | 129 | 1 | 7 | 306 | 33 | 334 | 6.10e-119 | 347 |
| Msa0646720 | AT1G75300.1 | 54.717 | 318 | 125 | 3 | 7 | 308 | 6 | 320 | 5.36e-112 | 328 |
| Msa0646720 | AT1G19540.1 | 50.164 | 305 | 148 | 2 | 6 | 306 | 2 | 306 | 6.74e-99 | 294 |
| Msa0646720 | AT4G34540.1 | 42.193 | 301 | 169 | 1 | 7 | 307 | 8 | 303 | 1.59e-87 | 265 |
| Msa0646720 | AT1G19540.2 | 50.787 | 254 | 121 | 2 | 6 | 255 | 2 | 255 | 3.05e-81 | 248 |
| Msa0646720 | AT1G32100.1 | 41.176 | 306 | 172 | 3 | 7 | 306 | 10 | 313 | 7.63e-73 | 228 |
| Msa0646720 | AT4G13660.1 | 40.968 | 310 | 175 | 3 | 4 | 307 | 7 | 314 | 1.59e-72 | 227 |
| Msa0646720 | AT4G13660.2 | 40.968 | 310 | 175 | 3 | 4 | 307 | 7 | 314 | 1.59e-72 | 227 |
Find 86 sgRNAs with CRISPR-Local
Find 315 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATAACCAATTTAAGTAAAA+TGG | 0.121188 | 4_3:-52585389 | None:intergenic |
| CTCAATGGCCCTACGAAATT+TGG | 0.190021 | 4_3:-52584230 | None:intergenic |
| GTCACCTTATCCTGTAAATA+TGG | 0.192397 | 4_3:+52585217 | Msa0646720:CDS |
| ACAAATCAATTTCTTTGTTA+TGG | 0.218072 | 4_3:+52585476 | Msa0646720:three_prime_UTR |
| ATTGGGTGTCAGCATAATTT+TGG | 0.220274 | 4_3:+52580220 | Msa0646720:CDS |
| GCTAGTATATTGTTTAATTA+AGG | 0.246395 | 4_3:+52585449 | Msa0646720:three_prime_UTR |
| AGGTTCTTTCCATCTGAATT+TGG | 0.248424 | 4_3:+52584148 | Msa0646720:CDS |
| CAAATCAATTTCTTTGTTAT+GGG | 0.263323 | 4_3:+52585477 | Msa0646720:three_prime_UTR |
| TCTATCTTTGACTCTATTGA+TGG | 0.297913 | 4_3:-52585531 | None:intergenic |
| ATTGCAAGGCCCATATTTAC+AGG | 0.311260 | 4_3:-52585227 | None:intergenic |
| CTTCATTCACTCCATGATTT+CGG | 0.323639 | 4_3:-52584183 | None:intergenic |
| ACTACAAAGATTCTTGTAAT+AGG | 0.327545 | 4_3:+52580068 | Msa0646720:CDS |
| ACAATGACCTAGTATCTCTT+TGG | 0.331162 | 4_3:+52584716 | Msa0646720:CDS |
| AGGATAATAACTGAATCTAA+TGG | 0.357946 | 4_3:-52584343 | None:intergenic |
| TGTCTCAATCATTTATTACT+TGG | 0.362070 | 4_3:-52585598 | None:intergenic |
| ATAACCAATTTAAGTAAAAT+GGG | 0.369317 | 4_3:-52585388 | None:intergenic |
| TCTCAATGATATATGAATAA+AGG | 0.385704 | 4_3:+52585628 | Msa0646720:three_prime_UTR |
| CACCCAATGTATTGAAACTT+TGG | 0.390278 | 4_3:-52580205 | None:intergenic |
| CAAGGTTCTTGGATCATCAA+TGG | 0.395204 | 4_3:-52584650 | None:intergenic |
| ATCCAAAGTTTCAATACATT+GGG | 0.396942 | 4_3:+52580203 | Msa0646720:CDS |
| GGCCTTGCAATTTGTCTGGC+TGG | 0.398360 | 4_3:+52585239 | Msa0646720:CDS |
| CACTTTGGATGAGTACTTTG+AGG | 0.399801 | 4_3:+52585349 | Msa0646720:CDS |
| TTAGATTCAGTTATTATCCT+TGG | 0.404938 | 4_3:+52584346 | Msa0646720:CDS |
| TATATACGACCACCAGAGTT+TGG | 0.407580 | 4_3:+52583732 | Msa0646720:CDS |
| TAGATTCAGTTATTATCCTT+GGG | 0.409696 | 4_3:+52584347 | Msa0646720:CDS |
| ATCTTCGGTACTTGCTTCCC+TGG | 0.416794 | 4_3:-52584778 | None:intergenic |
| AAAGGTTGTATTTGATACTA+AGG | 0.419647 | 4_3:+52584207 | Msa0646720:CDS |
| ATTCTTGTAATAGGAGGAAC+TGG | 0.422795 | 4_3:+52580077 | Msa0646720:CDS |
| CAATGACCTAGTATCTCTTT+GGG | 0.423107 | 4_3:+52584717 | Msa0646720:CDS |
| CATCCAAAGTTTCAATACAT+TGG | 0.423353 | 4_3:+52580202 | Msa0646720:CDS |
| TATGGGCCTTGCAATTTGTC+TGG | 0.430083 | 4_3:+52585235 | Msa0646720:CDS |
| CGACCACCAGAGTTTGGTTA+AGG | 0.452721 | 4_3:+52583738 | Msa0646720:CDS |
| AGGCCCATATTTACAGGATA+AGG | 0.455077 | 4_3:-52585221 | None:intergenic |
| TAAAGAGGCGGGAAACGTTA+AGG | 0.462126 | 4_3:+52583840 | Msa0646720:CDS |
| AAAGTGATATATTTGACATC+AGG | 0.462962 | 4_3:-52585332 | None:intergenic |
| TCAGTTATTATCCTTGGGAA+TGG | 0.476486 | 4_3:+52584352 | Msa0646720:CDS |
| AACTAACCTTGAATCATCTT+CGG | 0.477073 | 4_3:-52584793 | None:intergenic |
| GTAGTTGTTCCTACAGCCAT+TGG | 0.477336 | 4_3:-52580050 | None:intergenic |
| TCACCTTATCCTGTAAATAT+GGG | 0.480725 | 4_3:+52585218 | Msa0646720:CDS |
| TAAAATCAAAACATCAAGCT+TGG | 0.484335 | 4_3:-52585718 | None:intergenic |
| CAAGTACCGAAGATGATTCA+AGG | 0.489372 | 4_3:+52584787 | Msa0646720:CDS |
| CGTAGGGCCATTGAGGATGA+AGG | 0.491914 | 4_3:+52584238 | Msa0646720:CDS |
| AGTTTGCAACCACATAGGTA+TGG | 0.497796 | 4_3:-52584267 | None:intergenic |
| CAAATTTCGTAGGGCCATTG+AGG | 0.507301 | 4_3:+52584231 | Msa0646720:CDS |
| CGAAATCATGGAGTGAATGA+AGG | 0.517474 | 4_3:+52584184 | Msa0646720:CDS |
| ACATCATTTCCAAATTCAGA+TGG | 0.518619 | 4_3:-52584157 | None:intergenic |
| ATACTAAGGCCAAATTTCGT+AGG | 0.520792 | 4_3:+52584221 | Msa0646720:CDS |
| GGGAATTCCTTCATCCTCAA+TGG | 0.522128 | 4_3:-52584245 | None:intergenic |
| GTTGAAGCTAGCATTAAAGC+TGG | 0.523732 | 4_3:+52580119 | Msa0646720:CDS |
| CTTTGGTATTTCCATTCCCA+AGG | 0.523817 | 4_3:-52584363 | None:intergenic |
| GTTTGCAACCACATAGGTAT+GGG | 0.531410 | 4_3:-52584266 | None:intergenic |
| CTTGCTGCTATTAAAGAGGC+GGG | 0.539482 | 4_3:+52583829 | Msa0646720:CDS |
| TGATGTCAAATATATCACTT+TGG | 0.539498 | 4_3:+52585334 | Msa0646720:CDS |
| AATGATGTGGACCGAAATCA+TGG | 0.540715 | 4_3:+52584172 | Msa0646720:CDS |
| TATGAAATTGATCCCTCCAC+TGG | 0.542638 | 4_3:+52585287 | Msa0646720:CDS |
| TTATGACCTTAACCAAACTC+TGG | 0.550214 | 4_3:-52583744 | None:intergenic |
| TACTAAGGCCAAATTTCGTA+GGG | 0.556755 | 4_3:+52584222 | Msa0646720:CDS |
| ATCTGAATTTGGAAATGATG+TGG | 0.563360 | 4_3:+52584159 | Msa0646720:CDS |
| CCTCGTACAAGAGCAAAAGT+AGG | 0.566575 | 4_3:-52580146 | None:intergenic |
| ACAAAGATTCTTGTAATAGG+AGG | 0.577252 | 4_3:+52580071 | Msa0646720:CDS |
| CTCGTACAAGAGCAAAAGTA+GGG | 0.579207 | 4_3:-52580145 | None:intergenic |
| TTCTGAAGCTTCTACTCCAG+TGG | 0.580723 | 4_3:-52585303 | None:intergenic |
| TCTTCTCCCAAAGAGATACT+AGG | 0.582651 | 4_3:-52584723 | None:intergenic |
| ATTGTATGACAATGTGTTCG+TGG | 0.582720 | 4_3:-52584698 | None:intergenic |
| GGTTAAGGTCATAAAGCAAG+TGG | 0.584313 | 4_3:+52583753 | Msa0646720:CDS |
| GATCCTTGCTGCTATTAAAG+AGG | 0.586795 | 4_3:+52583825 | Msa0646720:CDS |
| AATAGGAGGAACTGGTTACG+TGG | 0.589366 | 4_3:+52580085 | Msa0646720:CDS |
| TCATGGAGTGAATGAAGGAA+AGG | 0.591385 | 4_3:+52584189 | Msa0646720:CDS |
| TGTCTGGCTGGATATGTGAA+TGG | 0.595623 | 4_3:+52585251 | Msa0646720:CDS |
| CCGCCTCTTTAATAGCAGCA+AGG | 0.600823 | 4_3:-52583828 | None:intergenic |
| CTTGGGAATGGAAATACCAA+AGG | 0.606722 | 4_3:+52584364 | Msa0646720:CDS |
| CCTTGCTGCTATTAAAGAGG+CGG | 0.611304 | 4_3:+52583828 | Msa0646720:CDS |
| TGAAGCTTCTACTCCAGTGG+AGG | 0.620290 | 4_3:-52585300 | None:intergenic |
| GAGAAAGTTTGCAACCACAT+AGG | 0.622252 | 4_3:-52584272 | None:intergenic |
| TGGTTATTATCACTTAACAA+AGG | 0.628967 | 4_3:+52585404 | Msa0646720:CDS |
| ATCCAGCCAGACAAATTGCA+AGG | 0.631936 | 4_3:-52585241 | None:intergenic |
| TTGTATGACAATGTGTTCGT+GGG | 0.632280 | 4_3:-52584697 | None:intergenic |
| TGACCTTAACCAAACTCTGG+TGG | 0.638131 | 4_3:-52583741 | None:intergenic |
| AGGAATTCCCCATACCTATG+TGG | 0.644732 | 4_3:+52584258 | Msa0646720:CDS |
| TAACCAATTTAAGTAAAATG+GGG | 0.651754 | 4_3:-52585387 | None:intergenic |
| GAAGCTTCTACTCCAGTGGA+GGG | 0.651967 | 4_3:-52585299 | None:intergenic |
| TCAATGAGTTGTGATTGAGT+TGG | 0.654303 | 4_3:-52584310 | None:intergenic |
| TGGATGATTGATGACTTGTG+TGG | 0.669204 | 4_3:-52580185 | None:intergenic |
| TATGACAATGTGTTCGTGGG+AGG | 0.672276 | 4_3:-52584694 | None:intergenic |
| TTTGCAACCACATAGGTATG+GGG | 0.684763 | 4_3:-52584265 | None:intergenic |
| ATAGGAGGAACTGGTTACGT+GGG | 0.687117 | 4_3:+52580086 | Msa0646720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | - | chr4_3:52582598-52582617 | None:intergenic | 0.0% |
| !! | ATATACTAAAATTAATATGA+CGG | - | chr4_3:52580810-52580829 | None:intergenic | 10.0% |
| !! | AATATTTAATAACTGTAATT+CGG | + | chr4_3:52580886-52580905 | Msa0646720:intron | 10.0% |
| !!! | TTTTTTTTACAAACTTTATA+AGG | - | chr4_3:52581156-52581175 | None:intergenic | 10.0% |
| !! | TTTGTAAAAAAAAAAAAAGA+TGG | + | chr4_3:52581163-52581182 | Msa0646720:intron | 10.0% |
| !! | AAAAAACAAAAATGAAAAAT+TGG | - | chr4_3:52582691-52582710 | None:intergenic | 10.0% |
| !! | GTCTTATAATATATATATAT+AGG | + | chr4_3:52582209-52582228 | Msa0646720:intron | 10.0% |
| !!! | GAGTTTTTATAATTTTAATT+GGG | + | chr4_3:52582231-52582250 | Msa0646720:intron | 10.0% |
| !! | AAAAAACAAAAATGAAAAAT+TGG | + | chr4_3:52582691-52582710 | Msa0646720:intron | 10.0% |
| !! | ATAAATCAATAATAATTATG+AGG | - | chr4_3:52583599-52583618 | None:intergenic | 10.0% |
| !!! | AAGTAAATTTCTAATTTTAA+AGG | - | chr4_3:52584406-52584425 | None:intergenic | 10.0% |
| !! | TAAAAAAAAATACTATTATG+CGG | + | chr4_3:52585506-52585525 | Msa0646720:three_prime_UTR | 10.0% |
| !! | TTAAAGCAAATAAAATAGTT+AGG | - | chr4_3:52580765-52580784 | None:intergenic | 15.0% |
| !! | TATACTAAAATTAATATGAC+GGG | - | chr4_3:52580809-52580828 | None:intergenic | 15.0% |
| !!! | GTATTAAATCTAGTTTAATT+TGG | - | chr4_3:52580928-52580947 | None:intergenic | 15.0% |
| !! | TAAACTAGATTTAATACAAA+TGG | + | chr4_3:52580931-52580950 | Msa0646720:intron | 15.0% |
| !!! | TTTTTCTTTGTTTTATGATT+TGG | - | chr4_3:52581089-52581108 | None:intergenic | 15.0% |
| !!! | AGTGGTATTTTTTTTTTTTT+TGG | + | chr4_3:52581196-52581215 | Msa0646720:intron | 15.0% |
| !!! | TCAGTTTTGAATTTTTTTTT+GGG | - | chr4_3:52583370-52583389 | None:intergenic | 15.0% |
| !! | AGAAATGGTATATATATTAT+TGG | - | chr4_3:52582742-52582761 | None:intergenic | 15.0% |
| !!! | GGAGTTTTTATAATTTTAAT+TGG | + | chr4_3:52582230-52582249 | Msa0646720:intron | 15.0% |
| !! | AATAATATATATCATTTCGT+CGG | - | chr4_3:52582431-52582450 | None:intergenic | 15.0% |
| !!! | GGAGTTTTTATAATTTTAAT+TGG | - | chr4_3:52582230-52582249 | None:intergenic | 15.0% |
| !! | AGAAATGGTATATATATTAT+TGG | + | chr4_3:52582742-52582761 | Msa0646720:intron | 15.0% |
| !!! | TCAGTTTTGAATTTTTTTTT+GGG | + | chr4_3:52583370-52583389 | Msa0646720:intron | 15.0% |
| !!! | TTTTTGTTTATATCTAAAAC+CGG | - | chr4_3:52584443-52584462 | None:intergenic | 15.0% |
| !! | TTAAAAAAATCTATATTCCA+GGG | + | chr4_3:52584761-52584780 | Msa0646720:CDS | 15.0% |
| !! | TTTAGTGTAATTATATGTAT+CGG | - | chr4_3:52585045-52585064 | None:intergenic | 15.0% |
| !! | TTAAGATTATATGCATAATA+AGG | + | chr4_3:52585153-52585172 | Msa0646720:intron | 15.0% |
| !! | ATAACCAATTTAAGTAAAAT+GGG | - | chr4_3:52585391-52585410 | None:intergenic | 15.0% |
| !! | AATAACCAATTTAAGTAAAA+TGG | - | chr4_3:52585392-52585411 | None:intergenic | 15.0% |
| !!! | TATATATAGCAATTTTCCAA+TGG | + | chr4_3:52580034-52580053 | Msa0646720:exon | 20.0% |
| !!! | ATTTGCAGCTTTAAAAAAAA+TGG | - | chr4_3:52580437-52580456 | None:intergenic | 20.0% |
| !!! | TCTATGGTTTTCTTTTAAAT+CGG | - | chr4_3:52580503-52580522 | None:intergenic | 20.0% |
| !! | TAGATTTAATACAAATGGAT+TGG | + | chr4_3:52580936-52580955 | Msa0646720:intron | 20.0% |
| !!! | TTATTTTATCCAAAGTAGTT+TGG | - | chr4_3:52580985-52581004 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGACAAGTATTAG+CGG | + | chr4_3:52581255-52581274 | Msa0646720:intron | 20.0% |
| !! | ATGATAATAAGTGGTTAATT+TGG | - | chr4_3:52581350-52581369 | None:intergenic | 20.0% |
| !! | TTAGTTGACTAAAATAAGAT+AGG | + | chr4_3:52581414-52581433 | Msa0646720:intron | 20.0% |
| !!! | ATTTGTATTTTGGTAAACAA+CGG | - | chr4_3:52581472-52581491 | None:intergenic | 20.0% |
| !!! | GTCAGTTTTGAATTTTTTTT+TGG | - | chr4_3:52583369-52583388 | None:intergenic | 20.0% |
| !! | AATCAACAAAAATTGAAAGT+GGG | - | chr4_3:52583318-52583337 | None:intergenic | 20.0% |
| !! | AAATCAACAAAAATTGAAAG+TGG | - | chr4_3:52583317-52583336 | None:intergenic | 20.0% |
| !!! | TGTAAAACTGTTTTAAGAAA+TGG | - | chr4_3:52582144-52582163 | None:intergenic | 20.0% |
| !! | AACAAAAATGAAAAATTGGA+TGG | - | chr4_3:52582695-52582714 | None:intergenic | 20.0% |
| !!! | ACGAAATATATATTTTTCAC+CGG | + | chr4_3:52582397-52582416 | Msa0646720:intron | 20.0% |
| !! | AACAAAAATGAAAAATTGGA+TGG | + | chr4_3:52582695-52582714 | Msa0646720:intron | 20.0% |
| !!! | TCTAAAACTGTTTTAAGAAA+TGG | + | chr4_3:52582727-52582746 | Msa0646720:intron | 20.0% |
| !! | AAATCAACAAAAATTGAAAG+TGG | + | chr4_3:52583317-52583336 | Msa0646720:intron | 20.0% |
| !! | AATCAACAAAAATTGAAAGT+GGG | + | chr4_3:52583318-52583337 | Msa0646720:intron | 20.0% |
| !! | TTTAGAAAATAAGTCTCATA+TGG | + | chr4_3:52583345-52583364 | Msa0646720:intron | 20.0% |
| !! | TTAGAAAATAAGTCTCATAT+GGG | + | chr4_3:52583346-52583365 | Msa0646720:intron | 20.0% |
| !!! | GTCAGTTTTGAATTTTTTTT+TGG | + | chr4_3:52583369-52583388 | Msa0646720:intron | 20.0% |
| !!! | ATTTTTTTTTTTGAGAGAGT+TGG | + | chr4_3:52583670-52583689 | Msa0646720:intron | 20.0% |
| !! | TATAATTCTTTCTTATACAG+AGG | + | chr4_3:52584128-52584147 | Msa0646720:intron | 20.0% |
| !! | AACAAAAAGTCAAATATATG+TGG | + | chr4_3:52584455-52584474 | Msa0646720:intron | 20.0% |
| !!! | AATATAGAGAATTTTGTTCA+AGG | - | chr4_3:52584671-52584690 | None:intergenic | 20.0% |
| !! | CTTAAAAAAATCTATATTCC+AGG | + | chr4_3:52584760-52584779 | Msa0646720:CDS | 20.0% |
| !!! | AGTATTGATTTATTCATTCA+AGG | + | chr4_3:52584925-52584944 | Msa0646720:intron | 20.0% |
| !! | TAACCAATTTAAGTAAAATG+GGG | - | chr4_3:52585390-52585409 | None:intergenic | 20.0% |
| !! | GCTAGTATATTGTTTAATTA+AGG | + | chr4_3:52585449-52585468 | Msa0646720:three_prime_UTR | 20.0% |
| !! | ACAAATCAATTTCTTTGTTA+TGG | + | chr4_3:52585476-52585495 | Msa0646720:three_prime_UTR | 20.0% |
| !!! | CAAATCAATTTCTTTGTTAT+GGG | + | chr4_3:52585477-52585496 | Msa0646720:three_prime_UTR | 20.0% |
| !! | TCTCAATGATATATGAATAA+AGG | + | chr4_3:52585628-52585647 | Msa0646720:three_prime_UTR | 20.0% |
| ! | ACTACAAAGATTCTTGTAAT+AGG | + | chr4_3:52580068-52580087 | Msa0646720:CDS | 25.0% |
| ! | ATCCAAAGTTTCAATACATT+GGG | + | chr4_3:52580203-52580222 | Msa0646720:CDS | 25.0% |
| !!! | AGTATTGATATTTATGTGTG+CGG | - | chr4_3:52580647-52580666 | None:intergenic | 25.0% |
| ! | TATAATCTTCCAAACTACTT+TGG | + | chr4_3:52580973-52580992 | Msa0646720:intron | 25.0% |
| ! | TTTGAATACCCTTGTATTTA+GGG | - | chr4_3:52581047-52581066 | None:intergenic | 25.0% |
| !!! | TTTTTGGTACAAATGATAAG+TGG | + | chr4_3:52581212-52581231 | Msa0646720:intron | 25.0% |
| !! | GATAAGTGGTATTTTATTAG+CGG | + | chr4_3:52581226-52581245 | Msa0646720:intron | 25.0% |
| !! | ATAATAAGTGGTTAATTTGG+TGG | - | chr4_3:52581347-52581366 | None:intergenic | 25.0% |
| !! | ATAATCCATGAACTTTTCTA+AGG | + | chr4_3:52581539-52581558 | Msa0646720:intron | 25.0% |
| ! | TCATTTACTTAGTAGATTGA+CGG | - | chr4_3:52581596-52581615 | None:intergenic | 25.0% |
| ! | ACTAAGTAAATGATATCTAC+CGG | + | chr4_3:52581603-52581622 | Msa0646720:intron | 25.0% |
| !!! | TGAATTTTTTTTTGGGAACA+GGG | - | chr4_3:52583377-52583396 | None:intergenic | 25.0% |
| !!! | TTGAATTTTTTTTTGGGAAC+AGG | - | chr4_3:52583376-52583395 | None:intergenic | 25.0% |
| ! | TTTGGAAAATAAGTCTCATA+GGG | - | chr4_3:52581727-52581746 | None:intergenic | 25.0% |
| !!! | TTTTGGAAAATAAGTCTCAT+AGG | - | chr4_3:52581728-52581747 | None:intergenic | 25.0% |
| ! | TATTTCGACGAAATTATCAT+AGG | + | chr4_3:52582262-52582281 | Msa0646720:intron | 25.0% |
| ! | ATTTCGACGAAATTATCATA+GGG | + | chr4_3:52582263-52582282 | Msa0646720:intron | 25.0% |
| ! | TATTTCGTCGAAATTATCAT+AGG | + | chr4_3:52582296-52582315 | Msa0646720:intron | 25.0% |
| ! | ATTTCGTCGAAATTATCATA+GGG | + | chr4_3:52582297-52582316 | Msa0646720:intron | 25.0% |
| ! | TATTTCGACGAAATTATCAT+AGG | + | chr4_3:52582262-52582281 | Msa0646720:intron | 25.0% |
| ! | ATTTCGACGAAATTATCATA+GGG | + | chr4_3:52582263-52582282 | Msa0646720:intron | 25.0% |
| !! | TTTTCTTTTTCTCAATTTGC+TGG | + | chr4_3:52582867-52582886 | Msa0646720:intron | 25.0% |
| !!! | TTTCTTTTTCTCAATTTGCT+GGG | + | chr4_3:52582868-52582887 | Msa0646720:intron | 25.0% |
| ! | GGAAAACGACAAAAAAAAAA+CGG | + | chr4_3:52583111-52583130 | Msa0646720:intron | 25.0% |
| ! | TAGAAAATAAGTCTCATATG+GGG | + | chr4_3:52583347-52583366 | Msa0646720:intron | 25.0% |
| !!! | TTGAATTTTTTTTTGGGAAC+AGG | + | chr4_3:52583376-52583395 | Msa0646720:intron | 25.0% |
| !!! | TGAATTTTTTTTTGGGAACA+GGG | + | chr4_3:52583377-52583396 | Msa0646720:intron | 25.0% |
| ! | TGATTTATAACACGTTGTTA+TGG | + | chr4_3:52583611-52583630 | Msa0646720:intron | 25.0% |
| ! | GATTTATAACACGTTGTTAT+GGG | + | chr4_3:52583612-52583631 | Msa0646720:intron | 25.0% |
| ! | ATTTATAACACGTTGTTATG+GGG | + | chr4_3:52583613-52583632 | Msa0646720:intron | 25.0% |
| !!! | TTGATGTTGATTTTTTGACA+GGG | + | chr4_3:52583706-52583725 | Msa0646720:intron | 25.0% |
| !! | ATTTTGTATTTATGCACTGT+CGG | - | chr4_3:52584091-52584110 | None:intergenic | 25.0% |
| ! | AAAGGTTGTATTTGATACTA+AGG | + | chr4_3:52584207-52584226 | Msa0646720:CDS | 25.0% |
| ! | AGGATAATAACTGAATCTAA+TGG | - | chr4_3:52584346-52584365 | None:intergenic | 25.0% |
| ! | TTAGATTCAGTTATTATCCT+TGG | + | chr4_3:52584346-52584365 | Msa0646720:CDS | 25.0% |
| ! | TAGATTCAGTTATTATCCTT+GGG | + | chr4_3:52584347-52584366 | Msa0646720:CDS | 25.0% |
| !!! | ATATTTGTGCTTTTTACCTT+TGG | - | chr4_3:52584383-52584402 | None:intergenic | 25.0% |
| ! | AAAGTGATATATTTGACATC+AGG | - | chr4_3:52585335-52585354 | None:intergenic | 25.0% |
| ! | TGATGTCAAATATATCACTT+TGG | + | chr4_3:52585334-52585353 | Msa0646720:CDS | 25.0% |
| ! | TGGTTATTATCACTTAACAA+AGG | + | chr4_3:52585404-52585423 | Msa0646720:CDS | 25.0% |
| ! | TGTCTCAATCATTTATTACT+TGG | - | chr4_3:52585601-52585620 | None:intergenic | 25.0% |
| ! | TAAAATCAAAACATCAAGCT+TGG | - | chr4_3:52585721-52585740 | None:intergenic | 25.0% |
| ! | GACAATGCATAATATATGTA+AGG | + | chr4_3:52585779-52585798 | Msa0646720:intron | 25.0% |
| ! | TGCATAATATATGTAAGGTT+TGG | + | chr4_3:52585784-52585803 | Msa0646720:intron | 25.0% |
| ! | GCATAATATATGTAAGGTTT+GGG | + | chr4_3:52585785-52585804 | Msa0646720:intron | 25.0% |
| ! | CATAATATATGTAAGGTTTG+GGG | + | chr4_3:52585786-52585805 | Msa0646720:intron | 25.0% |
| !!! | GTACTACACTTTTGTTTTTT+GGG | - | chr4_3:52585830-52585849 | None:intergenic | 25.0% |
| !!! | TGTACTACACTTTTGTTTTT+TGG | - | chr4_3:52585831-52585850 | None:intergenic | 25.0% |
| ACAAAGATTCTTGTAATAGG+AGG | + | chr4_3:52580071-52580090 | Msa0646720:CDS | 30.0% | |
| CATCCAAAGTTTCAATACAT+TGG | + | chr4_3:52580202-52580221 | Msa0646720:CDS | 30.0% | |
| AAGAAATGTGATGAGTGTAA+CGG | + | chr4_3:52580463-52580482 | Msa0646720:intron | 30.0% | |
| ! | GGTTTTCTTTTAAATCGGTT+AGG | - | chr4_3:52580498-52580517 | None:intergenic | 30.0% |
| !! | CAGTTTTTCAGATCAATCTA+TGG | - | chr4_3:52580519-52580538 | None:intergenic | 30.0% |
| ! | GTTCTTTTGTAAAAACCTCT+CGG | + | chr4_3:52580579-52580598 | Msa0646720:intron | 30.0% |
| TTGTAAACACCCTAAATACA+AGG | + | chr4_3:52581035-52581054 | Msa0646720:intron | 30.0% | |
| TGTAAACACCCTAAATACAA+GGG | + | chr4_3:52581036-52581055 | Msa0646720:intron | 30.0% | |
| GTTTGAATACCCTTGTATTT+AGG | - | chr4_3:52581048-52581067 | None:intergenic | 30.0% | |
| AGCTGTAGAATGATAATAAG+TGG | - | chr4_3:52581359-52581378 | None:intergenic | 30.0% | |
| AAAGTCCTTAGAAAAGTTCA+TGG | - | chr4_3:52581547-52581566 | None:intergenic | 30.0% | |
| TAAAATAATCTAGATGTCGC+CGG | - | chr4_3:52581625-52581644 | None:intergenic | 30.0% | |
| TTGGAAAATAAGTCTCATAG+GGG | - | chr4_3:52581726-52581745 | None:intergenic | 30.0% | |
| ! | AAATTGAAAGTGGGTCATTT+TGG | - | chr4_3:52583327-52583346 | None:intergenic | 30.0% |
| AAAAATAAGTCAAACCTGCA+TGG | - | chr4_3:52583024-52583043 | None:intergenic | 30.0% | |
| CTACAGGACAAAACAAAAAA+CGG | - | chr4_3:52582926-52582945 | None:intergenic | 30.0% | |
| ! | TCAATTTTCTGATACACTAC+AGG | - | chr4_3:52582910-52582929 | None:intergenic | 30.0% |
| AATTGACAACAATTCTACAC+TGG | - | chr4_3:52582772-52582791 | None:intergenic | 30.0% | |
| ATGAAAAATTGGATGGTTCA+TGG | - | chr4_3:52582702-52582721 | None:intergenic | 30.0% | |
| TTTCGACGAAATTATCATAG+GGG | + | chr4_3:52582264-52582283 | Msa0646720:intron | 30.0% | |
| TTTCGTCGAAATTATCATAG+GGG | + | chr4_3:52582298-52582317 | Msa0646720:intron | 30.0% | |
| TTTCGACGAAATTATCATAG+GGG | + | chr4_3:52582264-52582283 | Msa0646720:intron | 30.0% | |
| ATTTCGTCGAATTATCATAG+CGG | - | chr4_3:52582384-52582403 | None:intergenic | 30.0% | |
| ! | AGATTTTGTTCATATTCGTC+TGG | + | chr4_3:52582480-52582499 | Msa0646720:intron | 30.0% |
| ! | TAGAGTTTGTTCATATTCGT+CGG | + | chr4_3:52582523-52582542 | Msa0646720:intron | 30.0% |
| ATGAAAAATTGGATGGTTCA+TGG | + | chr4_3:52582702-52582721 | Msa0646720:intron | 30.0% | |
| AATTGACAACAATTCTACAC+TGG | + | chr4_3:52582772-52582791 | Msa0646720:intron | 30.0% | |
| ! | TCAATTTTCTGATACACTAC+AGG | + | chr4_3:52582910-52582929 | Msa0646720:intron | 30.0% |
| CTACAGGACAAAACAAAAAA+CGG | + | chr4_3:52582926-52582945 | Msa0646720:intron | 30.0% | |
| GTACGTTGTTTGGTATTTAT+TGG | + | chr4_3:52583638-52583657 | Msa0646720:intron | 30.0% | |
| GTTGTTTGGTATTTATTGGT+AGG | + | chr4_3:52583642-52583661 | Msa0646720:intron | 30.0% | |
| !!! | TTTTTTTTGAGAGAGTTGGT+AGG | + | chr4_3:52583674-52583693 | Msa0646720:intron | 30.0% |
| !!! | GTTGATGTTGATTTTTTGAC+AGG | + | chr4_3:52583705-52583724 | Msa0646720:intron | 30.0% |
| ACATCATTTCCAAATTCAGA+TGG | - | chr4_3:52584160-52584179 | None:intergenic | 30.0% | |
| ATCTGAATTTGGAAATGATG+TGG | + | chr4_3:52584159-52584178 | Msa0646720:CDS | 30.0% | |
| ! | TGTTTATATCTAAAACCGGA+GGG | - | chr4_3:52584439-52584458 | None:intergenic | 30.0% |
| ! | TTGTTTATATCTAAAACCGG+AGG | - | chr4_3:52584440-52584459 | None:intergenic | 30.0% |
| ! | AGAATTTTGTTCAAGGTTCT+TGG | - | chr4_3:52584664-52584683 | None:intergenic | 30.0% |
| AACTAACCTTGAATCATCTT+CGG | - | chr4_3:52584796-52584815 | None:intergenic | 30.0% | |
| TCACCTTATCCTGTAAATAT+GGG | + | chr4_3:52585218-52585237 | Msa0646720:CDS | 30.0% | |
| TCTATCTTTGACTCTATTGA+TGG | - | chr4_3:52585534-52585553 | None:intergenic | 30.0% | |
| ATTCTTGTAATAGGAGGAAC+TGG | + | chr4_3:52580077-52580096 | Msa0646720:CDS | 35.0% | |
| CACCCAATGTATTGAAACTT+TGG | - | chr4_3:52580208-52580227 | None:intergenic | 35.0% | |
| ! | ATTGGGTGTCAGCATAATTT+TGG | + | chr4_3:52580220-52580239 | Msa0646720:CDS | 35.0% |
| AAAAACCTCTCGGATGAAAT+TGG | + | chr4_3:52580589-52580608 | Msa0646720:intron | 35.0% | |
| AAAATCCAATTTCATCCGAG+AGG | - | chr4_3:52580597-52580616 | None:intergenic | 35.0% | |
| TGATATTTATGTGTGCGGTA+TGG | - | chr4_3:52580642-52580661 | None:intergenic | 35.0% | |
| ! | AGGGTGTTTACAATGTTGTT+TGG | - | chr4_3:52581028-52581047 | None:intergenic | 35.0% |
| ! | AGTGGTTAATTTGGTGGTTT+GGG | - | chr4_3:52581341-52581360 | None:intergenic | 35.0% |
| ! | AAGTGGTTAATTTGGTGGTT+TGG | - | chr4_3:52581342-52581361 | None:intergenic | 35.0% |
| AATTTATATTTGCTCCCAGC+AGG | + | chr4_3:52582024-52582043 | Msa0646720:intron | 35.0% | |
| TTCGACGAAATTATCATAGG+GGG | + | chr4_3:52582265-52582284 | Msa0646720:intron | 35.0% | |
| TTCGTCGAAATTATCATAGG+GGG | + | chr4_3:52582299-52582318 | Msa0646720:intron | 35.0% | |
| TTTCGTCGAATTATCATAGC+GGG | - | chr4_3:52582383-52582402 | None:intergenic | 35.0% | |
| CATTTCGTCGGATAATTTAC+CGG | - | chr4_3:52582419-52582438 | None:intergenic | 35.0% | |
| TTATGACCTTAACCAAACTC+TGG | - | chr4_3:52583747-52583766 | None:intergenic | 35.0% | |
| AGGTTCTTTCCATCTGAATT+TGG | + | chr4_3:52584148-52584167 | Msa0646720:CDS | 35.0% | |
| CTTCATTCACTCCATGATTT+CGG | - | chr4_3:52584186-52584205 | None:intergenic | 35.0% | |
| ATACTAAGGCCAAATTTCGT+AGG | + | chr4_3:52584221-52584240 | Msa0646720:CDS | 35.0% | |
| TACTAAGGCCAAATTTCGTA+GGG | + | chr4_3:52584222-52584241 | Msa0646720:CDS | 35.0% | |
| TCAATGAGTTGTGATTGAGT+TGG | - | chr4_3:52584313-52584332 | None:intergenic | 35.0% | |
| TCAGTTATTATCCTTGGGAA+TGG | + | chr4_3:52584352-52584371 | Msa0646720:CDS | 35.0% | |
| TTGTATGACAATGTGTTCGT+GGG | - | chr4_3:52584700-52584719 | None:intergenic | 35.0% | |
| ATTGTATGACAATGTGTTCG+TGG | - | chr4_3:52584701-52584720 | None:intergenic | 35.0% | |
| ACAATGACCTAGTATCTCTT+TGG | + | chr4_3:52584716-52584735 | Msa0646720:CDS | 35.0% | |
| CAATGACCTAGTATCTCTTT+GGG | + | chr4_3:52584717-52584736 | Msa0646720:CDS | 35.0% | |
| ATGAATGCAGATACAGACAT+TGG | - | chr4_3:52585124-52585143 | None:intergenic | 35.0% | |
| GTCACCTTATCCTGTAAATA+TGG | + | chr4_3:52585217-52585236 | Msa0646720:CDS | 35.0% | |
| ! | GCACCCCATTTTACTTAAAT+TGG | + | chr4_3:52585384-52585403 | Msa0646720:CDS | 35.0% |
| !!! | TTGTTTTTTGGGTGGTATTC+AGG | - | chr4_3:52585819-52585838 | None:intergenic | 35.0% |
| !!! | CTACACTTTTGTTTTTTGGG+TGG | - | chr4_3:52585827-52585846 | None:intergenic | 35.0% |
| ! | AGCAATTTTCCAATGGCTGT+AGG | + | chr4_3:52580041-52580060 | Msa0646720:exon | 40.0% |
| GTTGAAGCTAGCATTAAAGC+TGG | + | chr4_3:52580119-52580138 | Msa0646720:CDS | 40.0% | |
| CTCGTACAAGAGCAAAAGTA+GGG | - | chr4_3:52580148-52580167 | None:intergenic | 40.0% | |
| ! | TGGATGATTGATGACTTGTG+TGG | - | chr4_3:52580188-52580207 | None:intergenic | 40.0% |
| TTTATGTGTGCGGTATGGTT+CGG | - | chr4_3:52580637-52580656 | None:intergenic | 40.0% | |
| AAAGATGGACACGTGATAAG+TGG | + | chr4_3:52581178-52581197 | Msa0646720:intron | 40.0% | |
| GATACATGTCACATCGTTAC+TGG | - | chr4_3:52583050-52583069 | None:intergenic | 40.0% | |
| ACGATGTGACATGTATCAGA+TGG | + | chr4_3:52583053-52583072 | Msa0646720:intron | 40.0% | |
| ATGTGACATGTATCAGATGG+CGG | + | chr4_3:52583056-52583075 | Msa0646720:intron | 40.0% | |
| GACACATGTCACATTGTTAC+TGG | - | chr4_3:52583236-52583255 | None:intergenic | 40.0% | |
| ACAATGTGACATGTGTCAGA+TGG | + | chr4_3:52583239-52583258 | Msa0646720:intron | 40.0% | |
| TTATGGGGTAGTACGTTGTT+TGG | + | chr4_3:52583628-52583647 | Msa0646720:intron | 40.0% | |
| TATATACGACCACCAGAGTT+TGG | + | chr4_3:52583732-52583751 | Msa0646720:CDS | 40.0% | |
| GGTTAAGGTCATAAAGCAAG+TGG | + | chr4_3:52583753-52583772 | Msa0646720:CDS | 40.0% | |
| GATCCTTGCTGCTATTAAAG+AGG | + | chr4_3:52583825-52583844 | Msa0646720:CDS | 40.0% | |
| AATGATGTGGACCGAAATCA+TGG | + | chr4_3:52584172-52584191 | Msa0646720:CDS | 40.0% | |
| CGAAATCATGGAGTGAATGA+AGG | + | chr4_3:52584184-52584203 | Msa0646720:CDS | 40.0% | |
| TCATGGAGTGAATGAAGGAA+AGG | + | chr4_3:52584189-52584208 | Msa0646720:CDS | 40.0% | |
| TTTGCAACCACATAGGTATG+GGG | - | chr4_3:52584268-52584287 | None:intergenic | 40.0% | |
| GTTTGCAACCACATAGGTAT+GGG | - | chr4_3:52584269-52584288 | None:intergenic | 40.0% | |
| AGTTTGCAACCACATAGGTA+TGG | - | chr4_3:52584270-52584289 | None:intergenic | 40.0% | |
| GAGAAAGTTTGCAACCACAT+AGG | - | chr4_3:52584275-52584294 | None:intergenic | 40.0% | |
| CTTTGGTATTTCCATTCCCA+AGG | - | chr4_3:52584366-52584385 | None:intergenic | 40.0% | |
| CTTGGGAATGGAAATACCAA+AGG | + | chr4_3:52584364-52584383 | Msa0646720:CDS | 40.0% | |
| CAAGGTTCTTGGATCATCAA+TGG | - | chr4_3:52584653-52584672 | None:intergenic | 40.0% | |
| TCTTCTCCCAAAGAGATACT+AGG | - | chr4_3:52584726-52584745 | None:intergenic | 40.0% | |
| !! | CAAGTACCGAAGATGATTCA+AGG | + | chr4_3:52584787-52584806 | Msa0646720:CDS | 40.0% |
| TACAACACATGTCTCACACT+GGG | - | chr4_3:52585004-52585023 | None:intergenic | 40.0% | |
| ATACAACACATGTCTCACAC+TGG | - | chr4_3:52585005-52585024 | None:intergenic | 40.0% | |
| AGGCCCATATTTACAGGATA+AGG | - | chr4_3:52585224-52585243 | None:intergenic | 40.0% | |
| ATTGCAAGGCCCATATTTAC+AGG | - | chr4_3:52585230-52585249 | None:intergenic | 40.0% | |
| TATGAAATTGATCCCTCCAC+TGG | + | chr4_3:52585287-52585306 | Msa0646720:CDS | 40.0% | |
| CACTTTGGATGAGTACTTTG+AGG | + | chr4_3:52585349-52585368 | Msa0646720:CDS | 40.0% | |
| GTAGTTGTTCCTACAGCCAT+TGG | - | chr4_3:52580053-52580072 | None:intergenic | 45.0% | |
| AATAGGAGGAACTGGTTACG+TGG | + | chr4_3:52580085-52580104 | Msa0646720:CDS | 45.0% | |
| ATAGGAGGAACTGGTTACGT+GGG | + | chr4_3:52580086-52580105 | Msa0646720:CDS | 45.0% | |
| CCTCGTACAAGAGCAAAAGT+AGG | - | chr4_3:52580149-52580168 | None:intergenic | 45.0% | |
| !! | CCTACTTTTGCTCTTGTACG+AGG | + | chr4_3:52580146-52580165 | Msa0646720:CDS | 45.0% |
| ! | GTGGTTTGGGAGGAGATATT+GGG | - | chr4_3:52581328-52581347 | None:intergenic | 45.0% |
| ! | GGTTAATTTGGTGGTTTGGG+AGG | - | chr4_3:52581338-52581357 | None:intergenic | 45.0% |
| CTCATTCCCGCCATTTGAAA+CGG | + | chr4_3:52581791-52581810 | Msa0646720:intron | 45.0% | |
| ATGTGACATGTGTCAGATGG+CGG | - | chr4_3:52583242-52583261 | None:intergenic | 45.0% | |
| ACGATGTGACATGTGTCAGA+TGG | - | chr4_3:52581830-52581849 | None:intergenic | 45.0% | |
| GACACATGTCACATCGTTAC+TGG | + | chr4_3:52581833-52581852 | Msa0646720:intron | 45.0% | |
| TTCATTCCCGCCGTTTGAAA+CGG | - | chr4_3:52582978-52582997 | None:intergenic | 45.0% | |
| !! | ACAATTCTACACTGGCTCAG+TGG | - | chr4_3:52582780-52582799 | None:intergenic | 45.0% |
| !! | ACAATTCTACACTGGCTCAG+TGG | + | chr4_3:52582780-52582799 | Msa0646720:intron | 45.0% |
| TTCATTCCCGCCGTTTGAAA+TGG | + | chr4_3:52582978-52582997 | Msa0646720:intron | 45.0% | |
| ! | CTCATTCCCGCTGTTTCAAA+TGG | + | chr4_3:52583079-52583098 | Msa0646720:intron | 45.0% |
| ! | ATTCCCGCTGTTTCAAATGG+CGG | + | chr4_3:52583082-52583101 | Msa0646720:intron | 45.0% |
| ! | ATTCCCGCCATTTGAAACAG+CGG | - | chr4_3:52583089-52583108 | None:intergenic | 45.0% |
| ! | TGTTTCAAATGGCGGGAATG+AGG | + | chr4_3:52583090-52583109 | Msa0646720:intron | 45.0% |
| TTCATTCCCGCCGTTTGAAA+TGG | + | chr4_3:52582978-52582997 | Msa0646720:intron | 45.0% | |
| CACATTGTTACTGGTCATGC+AGG | - | chr4_3:52583227-52583246 | None:intergenic | 45.0% | |
| ATGTGACATGTGTCAGATGG+CGG | + | chr4_3:52583242-52583261 | Msa0646720:intron | 45.0% | |
| CTCATTCCCGCCATTTGAAA+CGG | - | chr4_3:52581791-52581810 | None:intergenic | 45.0% | |
| GTAGTACATGTCAAGAGCTC+AGG | - | chr4_3:52583542-52583561 | None:intergenic | 45.0% | |
| TGACCTTAACCAAACTCTGG+TGG | - | chr4_3:52583744-52583763 | None:intergenic | 45.0% | |
| CCTTGCTGCTATTAAAGAGG+CGG | + | chr4_3:52583828-52583847 | Msa0646720:CDS | 45.0% | |
| CTTGCTGCTATTAAAGAGGC+GGG | + | chr4_3:52583829-52583848 | Msa0646720:CDS | 45.0% | |
| TAAAGAGGCGGGAAACGTTA+AGG | + | chr4_3:52583840-52583859 | Msa0646720:CDS | 45.0% | |
| CTCAATGGCCCTACGAAATT+TGG | - | chr4_3:52584233-52584252 | None:intergenic | 45.0% | |
| CAAATTTCGTAGGGCCATTG+AGG | + | chr4_3:52584231-52584250 | Msa0646720:CDS | 45.0% | |
| GGGAATTCCTTCATCCTCAA+TGG | - | chr4_3:52584248-52584267 | None:intergenic | 45.0% | |
| AGGAATTCCCCATACCTATG+TGG | + | chr4_3:52584258-52584277 | Msa0646720:CDS | 45.0% | |
| TACTTATCACACACACCCTC+CGG | + | chr4_3:52584421-52584440 | Msa0646720:intron | 45.0% | |
| TATGACAATGTGTTCGTGGG+AGG | - | chr4_3:52584697-52584716 | None:intergenic | 45.0% | |
| TATGGGCCTTGCAATTTGTC+TGG | + | chr4_3:52585235-52585254 | Msa0646720:CDS | 45.0% | |
| ATCCAGCCAGACAAATTGCA+AGG | - | chr4_3:52585244-52585263 | None:intergenic | 45.0% | |
| TGTCTGGCTGGATATGTGAA+TGG | + | chr4_3:52585251-52585270 | Msa0646720:CDS | 45.0% | |
| !! | TTCTGAAGCTTCTACTCCAG+TGG | - | chr4_3:52585306-52585325 | None:intergenic | 45.0% |
| !!! | ATAAAAAAATATTCATTTTT+AGG | - | chr4_3:52580549-52580568 | None:intergenic | 5.0% |
| !!! | ATTAATATAAATTTGTATTT+TGG | - | chr4_3:52581482-52581501 | None:intergenic | 5.0% |
| !!! | TTTTTTTTGAATTTTTTTTT+CGG | + | chr4_3:52581874-52581893 | Msa0646720:intron | 5.0% |
| !!! | TTTTTTTTGAATTTTTTTTT+CGG | - | chr4_3:52581874-52581893 | None:intergenic | 5.0% |
| !!! | TTTTTTTTGAATTTTTTTTT+CGG | - | chr4_3:52581874-52581893 | None:intergenic | 5.0% |
| !!! | TAATGAATAAATTTTTTTTT+TGG | + | chr4_3:52584000-52584019 | Msa0646720:intron | 5.0% |
| !!! | TAATATTTTTAATAATTTGA+TGG | + | chr4_3:52584031-52584050 | Msa0646720:intron | 5.0% |
| !!! | TTTTTTTTTTTTGAAAAAAA+AGG | + | chr4_3:52585671-52585690 | Msa0646720:three_prime_UTR | 5.0% |
| ! | GGTGGTTTGGGAGGAGATAT+TGG | - | chr4_3:52581329-52581348 | None:intergenic | 50.0% |
| ! | CGTTTCAAATGGCGGGAATG+AGG | - | chr4_3:52583276-52583295 | None:intergenic | 50.0% |
| ! | ATTCCCGCCATTTGAAACGG+CGG | + | chr4_3:52581794-52581813 | Msa0646720:intron | 50.0% |
| ATTCCCGCCGTTTCAAATGG+CGG | - | chr4_3:52583268-52583287 | None:intergenic | 50.0% | |
| CTCATTCCCGCCGTTTCAAA+TGG | - | chr4_3:52583265-52583284 | None:intergenic | 50.0% | |
| ! | ATTCCCGCCGTTTGAAATGG+CGG | + | chr4_3:52582981-52583000 | Msa0646720:intron | 50.0% |
| TTCGGTCCCGCCATTTCAAA+CGG | - | chr4_3:52582991-52583010 | None:intergenic | 50.0% | |
| CACATCGTTACTGGTCATGC+AGG | - | chr4_3:52583041-52583060 | None:intergenic | 50.0% | |
| ! | TTCCCGCTGTTTCAAATGGC+GGG | + | chr4_3:52583083-52583102 | Msa0646720:intron | 50.0% |
| ! | TTCCCGCCATTTGAAACAGC+GGG | - | chr4_3:52583088-52583107 | None:intergenic | 50.0% |
| ! | ATTCCCGCCGTTTGAAATGG+CGG | + | chr4_3:52582981-52583000 | Msa0646720:intron | 50.0% |
| TTCGGTCCCGCCATTTCAAA+CGG | - | chr4_3:52582991-52583010 | None:intergenic | 50.0% | |
| CTCATTCCCGCCGTTTCAAA+TGG | + | chr4_3:52583265-52583284 | Msa0646720:intron | 50.0% | |
| ATTCCCGCCGTTTCAAATGG+CGG | + | chr4_3:52583268-52583287 | Msa0646720:intron | 50.0% | |
| ! | ATTCCCGCCATTTGAAACGG+CGG | - | chr4_3:52581794-52581813 | None:intergenic | 50.0% |
| ! | CGTTTCAAATGGCGGGAATG+AGG | + | chr4_3:52583276-52583295 | Msa0646720:intron | 50.0% |
| CGACCACCAGAGTTTGGTTA+AGG | + | chr4_3:52583738-52583757 | Msa0646720:CDS | 50.0% | |
| CCGCCTCTTTAATAGCAGCA+AGG | - | chr4_3:52583831-52583850 | None:intergenic | 50.0% | |
| ATCTTCGGTACTTGCTTCCC+TGG | - | chr4_3:52584781-52584800 | None:intergenic | 50.0% | |
| ACTGGGACACGCCTAATCTT+AGG | - | chr4_3:52584987-52585006 | None:intergenic | 50.0% | |
| GAAGCTTCTACTCCAGTGGA+GGG | - | chr4_3:52585302-52585321 | None:intergenic | 50.0% | |
| TGAAGCTTCTACTCCAGTGG+AGG | - | chr4_3:52585303-52585322 | None:intergenic | 50.0% | |
| ! | TTCCCGCCATTTGAAACGGC+GGG | + | chr4_3:52581795-52581814 | Msa0646720:intron | 55.0% |
| TTCCCGCCGTTTCAAATGGC+GGG | - | chr4_3:52583269-52583288 | None:intergenic | 55.0% | |
| CACATCGTTACTGGCCATGC+AGG | + | chr4_3:52581842-52581861 | Msa0646720:intron | 55.0% | |
| TTCGGTCCCGCCGTTTCAAA+CGG | + | chr4_3:52581892-52581911 | Msa0646720:intron | 55.0% | |
| ! | ATTCCCGCCGTTTGAAACGG+CGG | - | chr4_3:52581902-52581921 | None:intergenic | 55.0% |
| TAGTCGAACCAGACGCGCAT+GGG | - | chr4_3:52582825-52582844 | None:intergenic | 55.0% | |
| ! | CGTCTGGTTCGACTACTGCT+GGG | + | chr4_3:52582830-52582849 | Msa0646720:intron | 55.0% |
| ! | TTCCCGCCGTTTGAAATGGC+GGG | + | chr4_3:52582982-52583001 | Msa0646720:intron | 55.0% |
| ! | TTCCCGCCGTTTGAAATGGC+GGG | + | chr4_3:52582982-52583001 | Msa0646720:intron | 55.0% |
| TTCCCGCCGTTTCAAATGGC+GGG | + | chr4_3:52583269-52583288 | Msa0646720:intron | 55.0% | |
| ! | TTCCCGCCATTTGAAACGGC+GGG | - | chr4_3:52581795-52581814 | None:intergenic | 55.0% |
| CGTAGGGCCATTGAGGATGA+AGG | + | chr4_3:52584238-52584257 | Msa0646720:CDS | 55.0% | |
| GGCCTTGCAATTTGTCTGGC+TGG | + | chr4_3:52585239-52585258 | Msa0646720:CDS | 55.0% | |
| ! | TTCCCGCCGTTTGAAACGGC+GGG | - | chr4_3:52581901-52581920 | None:intergenic | 60.0% |
| CTCCCAGCAGGAGTCAAACC+AGG | + | chr4_3:52582036-52582055 | Msa0646720:intron | 60.0% | |
| ! | CGCCTGGTTTGACTCCTGCT+GGG | - | chr4_3:52582041-52582060 | None:intergenic | 60.0% |
| GAGTCAAACCAGGCGCGCAT+GGG | + | chr4_3:52582046-52582065 | Msa0646720:intron | 60.0% | |
| !! | CACTGGCTCAGTGGCAACAC+AGG | - | chr4_3:52582789-52582808 | None:intergenic | 60.0% |
| !! | CACTGGCTCAGTGGCAACAC+AGG | + | chr4_3:52582789-52582808 | Msa0646720:intron | 60.0% |
| TGCTTTGTCCCATGCGCGTC+TGG | + | chr4_3:52582814-52582833 | Msa0646720:intron | 60.0% | |
| GTAGTCGAACCAGACGCGCA+TGG | - | chr4_3:52582826-52582845 | None:intergenic | 60.0% | |
| ! | GCGTCTGGTTCGACTACTGC+TGG | + | chr4_3:52582829-52582848 | Msa0646720:intron | 60.0% |
| GTCCCGCCATTTCAAACGGC+GGG | - | chr4_3:52582987-52583006 | None:intergenic | 60.0% | |
| GGTCCCGCCATTTCAAACGG+CGG | - | chr4_3:52582988-52583007 | None:intergenic | 60.0% | |
| GTCCCGCCATTTCAAACGGC+GGG | - | chr4_3:52582987-52583006 | None:intergenic | 60.0% | |
| GGTCCCGCCATTTCAAACGG+CGG | - | chr4_3:52582988-52583007 | None:intergenic | 60.0% | |
| GGTCCCGCCGTTTCAAACGG+CGG | + | chr4_3:52581895-52581914 | Msa0646720:intron | 65.0% | |
| GTCCCGCCGTTTCAAACGGC+GGG | + | chr4_3:52581896-52581915 | Msa0646720:intron | 65.0% | |
| ! | GCGCCTGGTTTGACTCCTGC+TGG | - | chr4_3:52582042-52582061 | None:intergenic | 65.0% |
| GGAGTCAAACCAGGCGCGCA+TGG | + | chr4_3:52582045-52582064 | Msa0646720:intron | 65.0% | |
| TGCTTTGTCCCATGCGCGCC+TGG | - | chr4_3:52582057-52582076 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 52579984 | 52585900 | 52579984 | ID=Msa0646720;Name=Msa0646720 |
| chr4_3 | mRNA | 52579984 | 52585900 | 52579984 | ID=Msa0646720-mRNA-1;Parent=Msa0646720;Name=Msa0646720-mRNA-1;_AED=0.06;_eAED=0.06;_QI=69|1|1|1|0.8|0.66|6|396|330 |
| chr4_3 | exon | 52579984 | 52580241 | 52579984 | ID=Msa0646720-mRNA-1:exon:12889;Parent=Msa0646720-mRNA-1 |
| chr4_3 | exon | 52583727 | 52583861 | 52583727 | ID=Msa0646720-mRNA-1:exon:12890;Parent=Msa0646720-mRNA-1 |
| chr4_3 | exon | 52584148 | 52584385 | 52584148 | ID=Msa0646720-mRNA-1:exon:12891;Parent=Msa0646720-mRNA-1 |
| chr4_3 | exon | 52584605 | 52584808 | 52584605 | ID=Msa0646720-mRNA-1:exon:12892;Parent=Msa0646720-mRNA-1 |
| chr4_3 | exon | 52585216 | 52585795 | 52585216 | ID=Msa0646720-mRNA-1:exon:12893;Parent=Msa0646720-mRNA-1 |
| chr4_3 | exon | 52585858 | 52585900 | 52585858 | ID=Msa0646720-mRNA-1:exon:12894;Parent=Msa0646720-mRNA-1 |
| chr4_3 | five_prime_UTR | 52579984 | 52580052 | 52579984 | ID=Msa0646720-mRNA-1:five_prime_utr;Parent=Msa0646720-mRNA-1 |
| chr4_3 | CDS | 52580053 | 52580241 | 52580053 | ID=Msa0646720-mRNA-1:cds;Parent=Msa0646720-mRNA-1 |
| chr4_3 | CDS | 52583727 | 52583861 | 52583727 | ID=Msa0646720-mRNA-1:cds;Parent=Msa0646720-mRNA-1 |
| chr4_3 | CDS | 52584148 | 52584385 | 52584148 | ID=Msa0646720-mRNA-1:cds;Parent=Msa0646720-mRNA-1 |
| chr4_3 | CDS | 52584605 | 52584808 | 52584605 | ID=Msa0646720-mRNA-1:cds;Parent=Msa0646720-mRNA-1 |
| chr4_3 | CDS | 52585216 | 52585442 | 52585216 | ID=Msa0646720-mRNA-1:cds;Parent=Msa0646720-mRNA-1 |
| chr4_3 | three_prime_UTR | 52585443 | 52585795 | 52585443 | ID=Msa0646720-mRNA-1:three_prime_utr;Parent=Msa0646720-mRNA-1 |
| chr4_3 | three_prime_UTR | 52585858 | 52585900 | 52585858 | ID=Msa0646720-mRNA-1:three_prime_utr;Parent=Msa0646720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
