Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107400 | XP_013466817.1 | 95.135 | 370 | 18 | 0 | 1 | 370 | 1 | 370 | 0.0 | 737 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107400 | sp|P93324|CHOMT_MEDSA | 50.811 | 370 | 174 | 6 | 5 | 370 | 7 | 372 | 2.00e-130 | 381 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107400 | A0A072VHJ4 | 95.135 | 370 | 18 | 0 | 1 | 370 | 1 | 370 | 0.0 | 737 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015090 | Msa0107400 | 0.845040 | 5.204275e-59 | -8.615850e-47 |
| Msa0047460 | Msa0107400 | 0.830785 | 2.415097e-55 | -8.615850e-47 |
| Msa0049750 | Msa0107400 | 0.845231 | 4.620802e-59 | -8.615850e-47 |
| Msa0051210 | Msa0107400 | 0.805349 | 1.393321e-49 | -8.615850e-47 |
| Msa0051450 | Msa0107400 | 0.804873 | 1.752673e-49 | -8.615850e-47 |
| Msa0062970 | Msa0107400 | 0.888832 | 4.161152e-73 | -8.615850e-47 |
| Msa0065950 | Msa0107400 | 0.849888 | 2.421448e-60 | -8.615850e-47 |
| Msa0101830 | Msa0107400 | 0.812575 | 3.956370e-51 | -8.615850e-47 |
| Msa0107400 | Msa0138020 | 0.801319 | 9.525781e-49 | -8.615850e-47 |
| Msa0107400 | Msa0143930 | 0.803780 | 2.960638e-49 | -8.615850e-47 |
| Msa0107400 | Msa0153830 | 0.838093 | 3.528474e-57 | -8.615850e-47 |
| Msa0107400 | Msa0153980 | 0.965446 | 1.290761e-124 | -8.615850e-47 |
| Msa0107400 | Msa0164910 | 0.969357 | 5.281886e-130 | -8.615850e-47 |
| Msa0107400 | Msa0190250 | 0.816871 | 4.423661e-52 | -8.615850e-47 |
| Msa0107400 | Msa0206010 | 0.829465 | 5.070493e-55 | -8.615850e-47 |
| Msa0107400 | Msa0223010 | 0.800721 | 1.261795e-48 | -8.615850e-47 |
| Msa0107400 | Msa0243480 | 0.820678 | 6.040217e-53 | -8.615850e-47 |
| Msa0107400 | Msa0287410 | 0.803582 | 3.255114e-49 | -8.615850e-47 |
| Msa0107400 | Msa0301170 | 0.825720 | 4.018288e-54 | -8.615850e-47 |
| Msa0107400 | Msa0320430 | 0.829538 | 4.866430e-55 | -8.615850e-47 |
| Msa0107400 | Msa0321080 | 0.829990 | 3.777598e-55 | -8.615850e-47 |
| Msa0107400 | Msa0326110 | 0.829841 | 4.107791e-55 | -8.615850e-47 |
| Msa0107400 | Msa0329700 | 0.823160 | 1.608607e-53 | -8.615850e-47 |
| Msa0107400 | Msa0331020 | 0.801387 | 9.223730e-49 | -8.615850e-47 |
| Msa0107400 | Msa0438040 | 0.801793 | 7.613896e-49 | -8.615850e-47 |
| Msa0107400 | Msa0471900 | 0.805949 | 1.042721e-49 | -8.615850e-47 |
| Msa0107400 | Msa0477260 | 0.802002 | 6.897855e-49 | -8.615850e-47 |
| Msa0107400 | Msa0646720 | 0.800464 | 1.423806e-48 | -8.615850e-47 |
| Msa0107400 | Msa0653490 | 0.839556 | 1.476471e-57 | -8.615850e-47 |
| Msa0107400 | Msa0731180 | 0.818549 | 1.849549e-52 | -8.615850e-47 |
| Msa0107400 | Msa0741400 | 0.826264 | 2.984891e-54 | -8.615850e-47 |
| Msa0107400 | Msa0771580 | 0.830994 | 2.145504e-55 | -8.615850e-47 |
| Msa0107400 | Msa0812950 | 0.816987 | 4.165814e-52 | -8.615850e-47 |
| Msa0107400 | Msa0871430 | 0.824564 | 7.537358e-54 | -8.615850e-47 |
| Msa0107400 | Msa0872440 | 0.816178 | 6.321008e-52 | -8.615850e-47 |
| Msa0107400 | Msa0934840 | 0.822103 | 2.832509e-53 | -8.615850e-47 |
| Msa0107400 | Msa1008400 | 0.822679 | 2.081975e-53 | -8.615850e-47 |
| Msa0107400 | Msa1008450 | 0.851403 | 9.082402e-61 | -8.615850e-47 |
| Msa0107400 | Msa1013070 | 0.868857 | 4.778832e-66 | -8.615850e-47 |
| Msa0107400 | Msa1023180 | 0.817723 | 2.843458e-52 | -8.615850e-47 |
| Msa0107400 | Msa1023300 | 0.802522 | 5.389947e-49 | -8.615850e-47 |
| Msa0107400 | Msa1043050 | 0.807351 | 5.273260e-50 | -8.615850e-47 |
| Msa0107400 | Msa1087990 | 0.803897 | 2.799430e-49 | -8.615850e-47 |
| Msa0107400 | Msa1094280 | 0.844694 | 6.450252e-59 | -8.615850e-47 |
| Msa0107400 | Msa1098900 | 0.822872 | 1.877203e-53 | -8.615850e-47 |
| Msa0107400 | Msa1107260 | 0.822727 | 2.028905e-53 | -8.615850e-47 |
| Msa0107400 | Msa1129550 | 0.837735 | 4.361308e-57 | -8.615850e-47 |
| Msa0107400 | Msa1129730 | 0.838159 | 3.393290e-57 | -8.615850e-47 |
| Msa0107400 | Msa1150710 | 0.824169 | 9.337794e-54 | -8.615850e-47 |
| Msa0107400 | Msa1150900 | 0.804386 | 2.214215e-49 | -8.615850e-47 |
| Msa0107400 | Msa1208380 | 0.820214 | 7.719967e-53 | -8.615850e-47 |
| Msa0107400 | Msa1216310 | 0.810370 | 1.192210e-50 | -8.615850e-47 |
| Msa0107400 | Msa1239620 | 0.805680 | 1.187556e-49 | -8.615850e-47 |
| Msa0107400 | Msa1305180 | 0.805891 | 1.072233e-49 | -8.615850e-47 |
| Msa0107400 | Msa1305330 | 0.805003 | 1.646139e-49 | -8.615850e-47 |
| Msa0107400 | Msa1348850 | 0.856489 | 3.108655e-62 | -8.615850e-47 |
| Msa0107400 | Msa1377080 | 0.811732 | 6.041388e-51 | -8.615850e-47 |
| Msa0107400 | Msa1397120 | 0.801874 | 7.328313e-49 | -8.615850e-47 |
| Msa0107400 | Msa1427230 | 0.823466 | 1.364470e-53 | -8.615850e-47 |
| Msa0107400 | Msa1432810 | 0.810396 | 1.176904e-50 | -8.615850e-47 |
| Msa0107400 | Msa1438840 | 0.812531 | 4.045584e-51 | -8.615850e-47 |
| Msa0107400 | Msa1440190 | 0.815753 | 7.865452e-52 | -8.615850e-47 |
| Msa0107400 | Msa1448630 | 0.805094 | 1.576079e-49 | -8.615850e-47 |
| Msa0107400 | Msa1449750 | 0.820133 | 8.056884e-53 | -8.615850e-47 |
| Msa0107400 | Msa1460830 | 0.808223 | 3.441130e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107400 | MtrunA17_Chr1g0163611 | 95.135 | 370 | 18 | 0 | 1 | 370 | 1 | 370 | 0.0 | 737 |
| Msa0107400 | MtrunA17_Chr1g0163601 | 90.811 | 370 | 34 | 0 | 1 | 370 | 1 | 370 | 0.0 | 713 |
| Msa0107400 | MtrunA17_Chr1g0163621 | 82.162 | 370 | 65 | 1 | 1 | 370 | 16 | 384 | 0.0 | 612 |
| Msa0107400 | MtrunA17_Chr7g0218131 | 51.482 | 371 | 172 | 6 | 3 | 370 | 5 | 370 | 3.77e-134 | 387 |
| Msa0107400 | MtrunA17_Chr1g0200491 | 50.270 | 370 | 176 | 6 | 5 | 370 | 7 | 372 | 9.62e-131 | 379 |
| Msa0107400 | MtrunA17_Chr7g0218261 | 50.000 | 370 | 178 | 5 | 3 | 370 | 4 | 368 | 1.51e-130 | 378 |
| Msa0107400 | MtrunA17_Chr2g0307521 | 51.714 | 350 | 161 | 5 | 23 | 370 | 20 | 363 | 1.55e-128 | 373 |
| Msa0107400 | MtrunA17_Chr7g0218181 | 49.202 | 376 | 176 | 7 | 1 | 370 | 1 | 367 | 6.91e-127 | 369 |
| Msa0107400 | MtrunA17_Chr7g0218211 | 47.978 | 371 | 185 | 6 | 3 | 370 | 4 | 369 | 3.26e-126 | 367 |
| Msa0107400 | MtrunA17_Chr7g0218271 | 48.525 | 373 | 185 | 6 | 3 | 370 | 5 | 375 | 4.36e-124 | 362 |
| Msa0107400 | MtrunA17_Chr7g0218301 | 48.387 | 372 | 185 | 6 | 4 | 370 | 6 | 375 | 1.99e-122 | 358 |
| Msa0107400 | MtrunA17_Chr3g0085211 | 50.139 | 359 | 171 | 6 | 14 | 370 | 18 | 370 | 5.54e-122 | 357 |
| Msa0107400 | MtrunA17_Chr3g0085201 | 48.066 | 362 | 178 | 7 | 12 | 370 | 3 | 357 | 1.26e-113 | 335 |
| Msa0107400 | MtrunA17_Chr3g0128011 | 41.398 | 372 | 207 | 6 | 1 | 370 | 55 | 417 | 1.13e-102 | 309 |
| Msa0107400 | MtrunA17_Chr7g0276401 | 44.205 | 371 | 196 | 8 | 3 | 370 | 13 | 375 | 5.75e-99 | 298 |
| Msa0107400 | MtrunA17_Chr5g0448091 | 39.779 | 362 | 206 | 7 | 14 | 370 | 9 | 363 | 2.54e-91 | 278 |
| Msa0107400 | MtrunA17_Chr8g0367441 | 41.011 | 356 | 199 | 6 | 19 | 370 | 29 | 377 | 1.13e-90 | 277 |
| Msa0107400 | MtrunA17_Chr7g0276411 | 40.327 | 367 | 207 | 7 | 9 | 370 | 3 | 362 | 4.87e-89 | 272 |
| Msa0107400 | MtrunA17_Chr8g0367451 | 40.449 | 356 | 201 | 6 | 19 | 370 | 28 | 376 | 2.02e-88 | 271 |
| Msa0107400 | MtrunA17_Chr8g0367491 | 38.936 | 357 | 201 | 7 | 21 | 370 | 30 | 376 | 1.16e-87 | 269 |
| Msa0107400 | MtrunA17_Chr8g0367501 | 37.940 | 369 | 217 | 7 | 8 | 370 | 3 | 365 | 2.47e-85 | 265 |
| Msa0107400 | MtrunA17_Chr8g0367381 | 38.629 | 321 | 171 | 5 | 19 | 336 | 29 | 326 | 1.43e-75 | 236 |
| Msa0107400 | MtrunA17_Chr8g0345851 | 43.310 | 284 | 149 | 6 | 93 | 370 | 13 | 290 | 2.07e-75 | 235 |
| Msa0107400 | MtrunA17_Chr1g0170931 | 91.803 | 122 | 10 | 0 | 22 | 143 | 5 | 126 | 4.74e-74 | 225 |
| Msa0107400 | MtrunA17_Chr2g0314271 | 36.944 | 360 | 210 | 9 | 16 | 370 | 7 | 354 | 5.58e-63 | 205 |
| Msa0107400 | MtrunA17_Chr3g0130011 | 35.734 | 361 | 216 | 9 | 15 | 370 | 9 | 358 | 1.41e-61 | 201 |
| Msa0107400 | MtrunA17_Chr3g0130061 | 36.464 | 362 | 212 | 11 | 15 | 370 | 9 | 358 | 1.20e-58 | 194 |
| Msa0107400 | MtrunA17_Chr4g0022021 | 33.333 | 342 | 200 | 13 | 38 | 369 | 44 | 367 | 1.36e-50 | 173 |
| Msa0107400 | MtrunA17_Chr4g0021981 | 33.333 | 339 | 204 | 12 | 38 | 369 | 44 | 367 | 4.66e-49 | 169 |
| Msa0107400 | MtrunA17_Chr6g0482291 | 43.548 | 186 | 94 | 3 | 186 | 370 | 1 | 176 | 6.46e-49 | 162 |
| Msa0107400 | MtrunA17_Chr3g0121301 | 40.206 | 194 | 112 | 3 | 160 | 349 | 149 | 342 | 1.99e-46 | 162 |
| Msa0107400 | MtrunA17_Chr1g0188391 | 30.233 | 344 | 184 | 8 | 38 | 354 | 33 | 347 | 6.79e-43 | 152 |
| Msa0107400 | MtrunA17_Chr5g0432251 | 28.418 | 373 | 239 | 11 | 10 | 369 | 1 | 358 | 5.47e-42 | 150 |
| Msa0107400 | MtrunA17_Chr4g0046361 | 31.287 | 342 | 211 | 9 | 38 | 369 | 33 | 360 | 2.13e-41 | 149 |
| Msa0107400 | MtrunA17_Chr4g0040621 | 30.792 | 341 | 217 | 6 | 23 | 355 | 27 | 356 | 5.12e-41 | 148 |
| Msa0107400 | MtrunA17_Chr7g0219161 | 31.488 | 289 | 189 | 4 | 70 | 355 | 62 | 344 | 5.55e-41 | 147 |
| Msa0107400 | MtrunA17_Chr5g0432301 | 29.155 | 367 | 238 | 10 | 13 | 369 | 5 | 359 | 1.88e-40 | 146 |
| Msa0107400 | MtrunA17_Chr1g0170941 | 82.895 | 76 | 13 | 0 | 194 | 269 | 1 | 76 | 2.06e-40 | 137 |
| Msa0107400 | MtrunA17_Chr4g0014561 | 30.548 | 347 | 225 | 8 | 30 | 369 | 25 | 362 | 1.10e-39 | 144 |
| Msa0107400 | MtrunA17_Chr7g0223231 | 27.635 | 351 | 212 | 6 | 18 | 354 | 14 | 336 | 1.82e-39 | 143 |
| Msa0107400 | MtrunA17_Chr7g0219141 | 29.464 | 336 | 221 | 8 | 38 | 369 | 33 | 356 | 3.37e-39 | 142 |
| Msa0107400 | MtrunA17_Chr5g0432241 | 29.223 | 373 | 232 | 11 | 14 | 369 | 2 | 359 | 4.02e-39 | 142 |
| Msa0107400 | MtrunA17_Chr4g0046531 | 30.581 | 327 | 206 | 6 | 35 | 354 | 30 | 342 | 4.96e-39 | 147 |
| Msa0107400 | MtrunA17_Chr4g0046531 | 29.909 | 331 | 217 | 6 | 28 | 354 | 385 | 704 | 8.95e-38 | 144 |
| Msa0107400 | MtrunA17_Chr4g0014641 | 30.973 | 339 | 218 | 9 | 38 | 369 | 33 | 362 | 2.27e-38 | 140 |
| Msa0107400 | MtrunA17_Chr7g0223241 | 29.204 | 339 | 200 | 6 | 30 | 354 | 24 | 336 | 2.74e-38 | 140 |
| Msa0107400 | MtrunA17_Chr4g0014681 | 29.971 | 347 | 227 | 8 | 30 | 369 | 25 | 362 | 2.97e-38 | 140 |
| Msa0107400 | MtrunA17_Chr5g0432211 | 37.441 | 211 | 127 | 3 | 150 | 355 | 122 | 332 | 8.57e-38 | 139 |
| Msa0107400 | MtrunA17_Chr5g0432261 | 35.874 | 223 | 127 | 4 | 150 | 369 | 117 | 326 | 2.39e-37 | 137 |
| Msa0107400 | MtrunA17_Chr1g0188371 | 27.964 | 329 | 214 | 8 | 30 | 348 | 25 | 340 | 1.53e-36 | 136 |
| Msa0107400 | MtrunA17_Chr4g0046341 | 35.833 | 240 | 145 | 5 | 136 | 369 | 127 | 363 | 1.89e-35 | 133 |
| Msa0107400 | MtrunA17_Chr1g0170951 | 76.712 | 73 | 17 | 0 | 280 | 352 | 17 | 89 | 4.36e-35 | 124 |
| Msa0107400 | MtrunA17_Chr8g0367401 | 49.091 | 110 | 56 | 0 | 163 | 272 | 2 | 111 | 4.84e-35 | 125 |
| Msa0107400 | MtrunA17_Chr4g0014661 | 29.191 | 346 | 225 | 8 | 30 | 369 | 25 | 356 | 5.81e-29 | 115 |
| Msa0107400 | MtrunA17_Chr4g0014591 | 29.588 | 267 | 173 | 6 | 29 | 292 | 24 | 278 | 2.53e-25 | 105 |
| Msa0107400 | MtrunA17_Chr8g0367461 | 42.105 | 114 | 63 | 2 | 258 | 370 | 1 | 112 | 4.99e-24 | 95.5 |
| Msa0107400 | MtrunA17_Chr7g0219171 | 37.313 | 134 | 78 | 3 | 239 | 369 | 117 | 247 | 3.50e-23 | 97.1 |
| Msa0107400 | MtrunA17_Chr8g0367421 | 41.818 | 110 | 47 | 1 | 163 | 272 | 2 | 94 | 7.26e-23 | 92.8 |
| Msa0107400 | MtrunA17_Chr4g0014601 | 29.032 | 248 | 160 | 7 | 30 | 274 | 25 | 259 | 6.05e-20 | 88.6 |
| Msa0107400 | MtrunA17_Chr8g0367391 | 43.564 | 101 | 54 | 2 | 271 | 370 | 36 | 134 | 6.74e-18 | 79.3 |
| Msa0107400 | MtrunA17_Chr8g0367411 | 32.540 | 126 | 80 | 2 | 14 | 137 | 3 | 125 | 2.92e-17 | 77.8 |
| Msa0107400 | MtrunA17_Chr8g0367481 | 35.294 | 119 | 72 | 2 | 19 | 135 | 29 | 144 | 4.27e-16 | 75.1 |
| Msa0107400 | MtrunA17_Chr8g0367471 | 46.667 | 60 | 32 | 0 | 194 | 253 | 9 | 68 | 4.80e-15 | 70.1 |
| Msa0107400 | MtrunA17_Chr6g0476581 | 46.154 | 91 | 41 | 2 | 3 | 90 | 5 | 90 | 9.86e-14 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107400 | AT5G54160.1 | 45.000 | 340 | 178 | 4 | 19 | 356 | 17 | 349 | 7.72e-103 | 308 |
| Msa0107400 | AT1G77520.1 | 40.052 | 387 | 206 | 12 | 3 | 370 | 2 | 381 | 4.95e-87 | 268 |
| Msa0107400 | AT1G51990.2 | 39.763 | 337 | 191 | 6 | 19 | 349 | 13 | 343 | 1.99e-80 | 251 |
| Msa0107400 | AT1G51990.1 | 39.763 | 337 | 191 | 6 | 19 | 349 | 13 | 343 | 4.62e-80 | 249 |
| Msa0107400 | AT1G33030.1 | 38.636 | 352 | 199 | 9 | 25 | 370 | 10 | 350 | 5.08e-76 | 239 |
| Msa0107400 | AT1G63140.2 | 39.344 | 366 | 197 | 11 | 19 | 370 | 27 | 381 | 1.51e-73 | 233 |
| Msa0107400 | AT1G63140.4 | 39.344 | 366 | 197 | 11 | 19 | 370 | 47 | 401 | 1.81e-73 | 234 |
| Msa0107400 | AT1G77530.1 | 40.162 | 371 | 203 | 9 | 12 | 370 | 18 | 381 | 1.86e-72 | 231 |
| Msa0107400 | AT1G21130.1 | 39.418 | 378 | 208 | 12 | 1 | 370 | 9 | 373 | 3.20e-67 | 217 |
| Msa0107400 | AT1G21110.1 | 39.888 | 356 | 197 | 11 | 23 | 370 | 27 | 373 | 1.51e-65 | 213 |
| Msa0107400 | AT1G21100.1 | 39.607 | 356 | 198 | 11 | 23 | 370 | 27 | 373 | 2.27e-65 | 212 |
| Msa0107400 | AT1G76790.1 | 41.499 | 347 | 182 | 12 | 23 | 357 | 17 | 354 | 6.96e-65 | 211 |
| Msa0107400 | AT1G21120.1 | 39.607 | 356 | 198 | 11 | 23 | 370 | 27 | 373 | 5.21e-64 | 208 |
| Msa0107400 | AT1G21120.2 | 39.607 | 356 | 198 | 11 | 23 | 370 | 75 | 421 | 3.87e-63 | 207 |
| Msa0107400 | AT5G53810.1 | 37.464 | 347 | 199 | 10 | 35 | 370 | 39 | 378 | 1.06e-60 | 200 |
| Msa0107400 | AT3G53140.1 | 36.571 | 350 | 198 | 11 | 16 | 353 | 7 | 344 | 1.62e-60 | 199 |
| Msa0107400 | AT5G37170.1 | 34.688 | 369 | 181 | 12 | 11 | 370 | 17 | 334 | 1.05e-56 | 188 |
| Msa0107400 | AT5G37170.2 | 44.000 | 200 | 107 | 4 | 174 | 370 | 37 | 234 | 1.42e-52 | 174 |
| Msa0107400 | AT1G62900.1 | 42.647 | 204 | 113 | 3 | 169 | 370 | 4 | 205 | 7.12e-52 | 172 |
| Msa0107400 | AT1G33030.3 | 38.039 | 255 | 144 | 7 | 25 | 274 | 10 | 255 | 8.63e-49 | 166 |
| Msa0107400 | AT5G37170.3 | 43.617 | 188 | 101 | 4 | 186 | 370 | 1 | 186 | 3.45e-48 | 161 |
| Msa0107400 | AT1G33030.2 | 37.945 | 253 | 143 | 7 | 25 | 272 | 10 | 253 | 9.13e-48 | 163 |
| Msa0107400 | AT1G63140.1 | 39.474 | 266 | 140 | 8 | 19 | 272 | 47 | 303 | 1.79e-47 | 163 |
| Msa0107400 | AT4G35150.1 | 35.577 | 208 | 124 | 4 | 157 | 354 | 103 | 310 | 4.26e-42 | 150 |
| Msa0107400 | AT1G21130.2 | 39.209 | 278 | 152 | 9 | 1 | 272 | 9 | 275 | 4.01e-41 | 146 |
| Msa0107400 | AT4G35160.1 | 37.073 | 205 | 119 | 4 | 160 | 354 | 163 | 367 | 3.69e-37 | 138 |
| Msa0107400 | AT1G77530.2 | 38.956 | 249 | 137 | 7 | 12 | 250 | 18 | 261 | 9.21e-36 | 132 |
| Msa0107400 | AT1G63140.3 | 37.705 | 244 | 131 | 8 | 19 | 250 | 47 | 281 | 1.84e-35 | 131 |
Find 63 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCAATATCCTTCAATTA+AGG | 0.171873 | 1_3:-17720963 | Msa0107400:CDS |
| ACTGCAAGCCATATGAAATT+TGG | 0.231520 | 1_3:+17720371 | None:intergenic |
| ACAATCACTTTCCCATGTTT+TGG | 0.276979 | 1_3:+17720540 | None:intergenic |
| CTGGACCATTAGAAATTAAA+AGG | 0.282224 | 1_3:-17721072 | Msa0107400:CDS |
| GGATAAAGATGGAGGCTCTT+TGG | 0.282636 | 1_3:-17723419 | Msa0107400:CDS |
| TGGACCAACCTTTAGTAAAA+TGG | 0.289172 | 1_3:+17720721 | None:intergenic |
| TCAAGCCTCTCAGCCAATTC+AGG | 0.291900 | 1_3:+17723559 | None:intergenic |
| GCCAATTCAGGGTGTTGATT+TGG | 0.300679 | 1_3:+17723571 | None:intergenic |
| ACATGGGAAAGTGATTGTTT+TGG | 0.324846 | 1_3:-17720535 | Msa0107400:CDS |
| AGGATCCTCAAGTTATATAA+AGG | 0.334038 | 1_3:-17721052 | Msa0107400:CDS |
| TAGACATATTGCTAGGGTTT+GGG | 0.337888 | 1_3:+17720493 | None:intergenic |
| GATAAAGATGGAGGCTCTTT+GGG | 0.338071 | 1_3:-17723418 | Msa0107400:CDS |
| AAGTTACACCTTTCAAAGTT+TGG | 0.344197 | 1_3:+17720211 | None:intergenic |
| AACCAAGCAATGGGCCAATC+TGG | 0.360100 | 1_3:-17721091 | Msa0107400:CDS |
| ATTCAATTCTTTATTTGTCT+TGG | 0.365557 | 1_3:+17721123 | None:intergenic |
| TGATGCAAAGGATGCAATAT+TGG | 0.368078 | 1_3:-17721203 | Msa0107400:CDS |
| ATAGCAGCATTTAGTATTGC+AGG | 0.379466 | 1_3:+17723682 | None:intergenic |
| TCCAAATCAACACCCTGAAT+TGG | 0.385842 | 1_3:-17723572 | Msa0107400:CDS |
| TGCAGCTTGTATGTCATAAC+TGG | 0.386144 | 1_3:-17720611 | Msa0107400:intron |
| AAACACTGTTACATCCTCTA+TGG | 0.386200 | 1_3:+17723377 | None:intergenic |
| TTGCTAGGGTTTGGGACCTC+TGG | 0.390764 | 1_3:+17720501 | None:intergenic |
| TAATTTCAAAGCAAAGAATA+AGG | 0.395526 | 1_3:-17720244 | Msa0107400:three_prime_UTR |
| TCTCAATATCCTTCAATTAA+GGG | 0.412926 | 1_3:-17720962 | Msa0107400:CDS |
| AAATTAACTCCCTTAATTGA+AGG | 0.418849 | 1_3:+17720953 | None:intergenic |
| TTAGACATATTGCTAGGGTT+TGG | 0.423715 | 1_3:+17720492 | None:intergenic |
| GTCTATGCTCTCTCATCAAT+TGG | 0.426519 | 1_3:-17723457 | Msa0107400:CDS |
| ATAGAGGATGTAACAGTGTT+TGG | 0.430033 | 1_3:-17723375 | Msa0107400:intron |
| AACTTCACACATTCTTCATC+TGG | 0.433585 | 1_3:+17720588 | None:intergenic |
| TAATTTCTAATGGTCCAGAT+TGG | 0.453045 | 1_3:+17721077 | None:intergenic |
| TACTTTGCATTGGATAAAGA+TGG | 0.457504 | 1_3:-17723430 | Msa0107400:CDS |
| GTCTCAACATTGGTTGATGT+TGG | 0.466870 | 1_3:-17721019 | Msa0107400:CDS |
| CTTGTAGGGCTTGAGCATGT+TGG | 0.467262 | 1_3:-17720779 | Msa0107400:intron |
| GTCCAGATTGGCCCATTGCT+TGG | 0.468407 | 1_3:+17721089 | None:intergenic |
| AATTGGTCAATACTTTGCAT+TGG | 0.471367 | 1_3:-17723440 | Msa0107400:CDS |
| AGTGATGTCTCAGCCATGTC+TGG | 0.482323 | 1_3:-17720351 | Msa0107400:CDS |
| GCATGCTTAGACATATTGCT+AGG | 0.482902 | 1_3:+17720486 | None:intergenic |
| ACCATCTTCATTGCTACGAA+TGG | 0.491609 | 1_3:+17723492 | None:intergenic |
| CTATGGATTAATGTTGAAAG+TGG | 0.496391 | 1_3:+17723394 | None:intergenic |
| CACAAAGCTTTACCAAAACA+TGG | 0.501741 | 1_3:-17720552 | Msa0107400:CDS |
| CAAAACCTTTATATAACTTG+AGG | 0.507417 | 1_3:+17721047 | None:intergenic |
| GTAGGGCTTGAGCATGTTGG+AGG | 0.508594 | 1_3:-17720776 | Msa0107400:intron |
| AATTGTGTCCAAACTTTGAA+AGG | 0.512180 | 1_3:-17720219 | Msa0107400:three_prime_UTR |
| GAGAGCTTATGTAAGAGAGC+TGG | 0.513125 | 1_3:-17720399 | Msa0107400:CDS |
| CAAGATGCACCTACTCATCC+AGG | 0.521406 | 1_3:-17720911 | Msa0107400:intron |
| TCCATTCGTAGCAATGAAGA+TGG | 0.521441 | 1_3:-17723493 | Msa0107400:CDS |
| AGTAAAATGGCATCACCACT+TGG | 0.524337 | 1_3:+17720734 | None:intergenic |
| GTTGATGTTGGAGGTGGAGT+AGG | 0.524896 | 1_3:-17721007 | Msa0107400:CDS |
| CTCAGCCATGTCTGGAGTGA+TGG | 0.528544 | 1_3:-17720343 | Msa0107400:CDS |
| CAAGCCTCTCAGCCAATTCA+GGG | 0.537180 | 1_3:+17723560 | None:intergenic |
| CTTTCAACATTAATCCATAG+AGG | 0.541916 | 1_3:-17723391 | Msa0107400:CDS |
| CATGCTTAGACATATTGCTA+GGG | 0.550831 | 1_3:+17720487 | None:intergenic |
| TGAACGCATGTTGACTGTGT+TGG | 0.560083 | 1_3:-17723539 | Msa0107400:CDS |
| AAATAATCTTCCTACTAATG+AGG | 0.564642 | 1_3:-17723764 | Msa0107400:CDS |
| ACATTGGTTGATGTTGGAGG+TGG | 0.572639 | 1_3:-17721013 | Msa0107400:CDS |
| TCAACATTGGTTGATGTTGG+AGG | 0.581118 | 1_3:-17721016 | Msa0107400:CDS |
| CACTTGCAGGGGTGATGCAA+AGG | 0.585977 | 1_3:-17721215 | Msa0107400:intron |
| AAACTCCATCACTCCAGACA+TGG | 0.612342 | 1_3:+17720338 | None:intergenic |
| GGTGCATCTTGAACAGCTTG+TGG | 0.613069 | 1_3:+17720923 | None:intergenic |
| AACACCCTGAATTGGCTGAG+AGG | 0.629156 | 1_3:-17723564 | Msa0107400:CDS |
| TTTGGATTATATAATTCCAG+AGG | 0.634533 | 1_3:-17720517 | Msa0107400:CDS |
| TTTGCATTGGATAAAGATGG+AGG | 0.638338 | 1_3:-17723427 | Msa0107400:CDS |
| ACAAAGCTTTACCAAAACAT+GGG | 0.663342 | 1_3:-17720551 | Msa0107400:CDS |
| ATGTTTGAAAGTGTTCCAAG+TGG | 0.739305 | 1_3:-17720749 | Msa0107400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTCTAATTTTTATTTTTTTT+AGG | + | chr1_3:17720643-17720662 | None:intergenic | 10.0% |
| !!! | ATTTATCTTTTTTTTTTGAA+AGG | + | chr1_3:17721818-17721837 | None:intergenic | 10.0% |
| !!! | TATTAAAACATTTTTTTTGA+GGG | - | chr1_3:17721975-17721994 | Msa0107400:intron | 10.0% |
| !!! | AATAAAATATTTTTATCCTT+AGG | - | chr1_3:17722030-17722049 | Msa0107400:intron | 10.0% |
| !! | TATCTATCATATAAAAAATA+TGG | - | chr1_3:17722085-17722104 | Msa0107400:intron | 10.0% |
| !! | AATCATATACATATATATTA+CGG | - | chr1_3:17722318-17722337 | Msa0107400:intron | 10.0% |
| !! | AATAGTTAATTTATAGATTT+AGG | - | chr1_3:17722521-17722540 | Msa0107400:intron | 10.0% |
| !! | TGATTTAATGATAAAAAGAT+AGG | + | chr1_3:17720930-17720949 | None:intergenic | 15.0% |
| !! | TAAAATATTAGCATAATTCA+AGG | + | chr1_3:17721070-17721089 | None:intergenic | 15.0% |
| !!! | AGTTTATCAAATAAAGTTTT+TGG | - | chr1_3:17721258-17721277 | Msa0107400:intron | 15.0% |
| !! | TAATAATGTAAACATTTGTT+TGG | - | chr1_3:17721696-17721715 | Msa0107400:intron | 15.0% |
| !! | AATAATGTAAACATTTGTTT+GGG | - | chr1_3:17721697-17721716 | Msa0107400:intron | 15.0% |
| !!! | CTATTAAAACATTTTTTTTG+AGG | - | chr1_3:17721974-17721993 | Msa0107400:intron | 15.0% |
| !!! | ATTAAAACATTTTTTTTGAG+GGG | - | chr1_3:17721976-17721995 | Msa0107400:intron | 15.0% |
| !! | ATCATATACATATATATTAC+GGG | - | chr1_3:17722319-17722338 | Msa0107400:intron | 15.0% |
| !! | TAAATATAGACATATTTGTA+TGG | - | chr1_3:17722665-17722684 | Msa0107400:intron | 15.0% |
| !!! | TTTATGGTACTTATTATTTT+TGG | + | chr1_3:17723110-17723129 | None:intergenic | 15.0% |
| !! | TACAAGCAAAATAAAATTTA+TGG | + | chr1_3:17723126-17723145 | None:intergenic | 15.0% |
| !!! | ATAAATTTTATTTTGCTTGT+AGG | - | chr1_3:17723125-17723144 | Msa0107400:intron | 15.0% |
| !!! | TAAATTTTATTTTGCTTGTA+GGG | - | chr1_3:17723126-17723145 | Msa0107400:intron | 15.0% |
| !!! | TTTAAATTTTGTTTATCATG+TGG | + | chr1_3:17723221-17723240 | None:intergenic | 15.0% |
| !! | TAAACAAAATTTAAACAGTT+TGG | - | chr1_3:17723226-17723245 | Msa0107400:intron | 15.0% |
| !!! | CATTTTTGCTAACTATTTTA+TGG | + | chr1_3:17720118-17720137 | None:intergenic | 20.0% |
| !!! | AAGATTATTTTGCTTAGAAT+TGG | + | chr1_3:17720145-17720164 | None:intergenic | 20.0% |
| !! | TTAAAAAAAGAGAAAGTCTT+AGG | + | chr1_3:17720773-17720792 | None:intergenic | 20.0% |
| !!! | GATTTTAGGTTTTCTTTTTT+TGG | + | chr1_3:17720827-17720846 | None:intergenic | 20.0% |
| !! | TATATCTACCATATTTCTTT+AGG | - | chr1_3:17720872-17720891 | Msa0107400:intron | 20.0% |
| !!! | ATGCTAATATTTTAGAAGAT+AGG | - | chr1_3:17721076-17721095 | Msa0107400:CDS | 20.0% |
| !!! | TTTGAATCTTAAGTTTTCAA+TGG | - | chr1_3:17721129-17721148 | Msa0107400:CDS | 20.0% |
| !!! | TTTAAGATTAGAGTTGTATA+TGG | + | chr1_3:17721228-17721247 | None:intergenic | 20.0% |
| !! | TATTTAAAAGTTTGAACACT+TGG | + | chr1_3:17721445-17721464 | None:intergenic | 20.0% |
| !! | ACAATTAGTAATATCTATGT+TGG | + | chr1_3:17721493-17721512 | None:intergenic | 20.0% |
| !! | TAAAATTCCAAAATCCAAAA+TGG | - | chr1_3:17721662-17721681 | Msa0107400:intron | 20.0% |
| !! | ATAATGTAAACATTTGTTTG+GGG | - | chr1_3:17721698-17721717 | Msa0107400:intron | 20.0% |
| !!! | TCTGAAAAATACTTTTATAG+AGG | - | chr1_3:17721847-17721866 | Msa0107400:intron | 20.0% |
| !!! | CTGAAAAATACTTTTATAGA+GGG | - | chr1_3:17721848-17721867 | Msa0107400:intron | 20.0% |
| !!! | GAAAAAAAGTTTTACTAAGT+CGG | - | chr1_3:17721889-17721908 | Msa0107400:intron | 20.0% |
| !! | TCTTTGACGAAAAATATTAA+TGG | + | chr1_3:17722135-17722154 | None:intergenic | 20.0% |
| !!! | AAATTATTTTTTGTGTGTGA+TGG | + | chr1_3:17722352-17722371 | None:intergenic | 20.0% |
| !! | GTATATACTTTATATGAACA+CGG | - | chr1_3:17722386-17722405 | Msa0107400:intron | 20.0% |
| !! | AATGGGAATATAAAAATGAT+TGG | - | chr1_3:17722453-17722472 | Msa0107400:intron | 20.0% |
| !! | ATGGGAATATAAAAATGATT+GGG | - | chr1_3:17722454-17722473 | Msa0107400:intron | 20.0% |
| !! | CAAATATGTCTATATTTACT+AGG | + | chr1_3:17722663-17722682 | None:intergenic | 20.0% |
| !!! | AATCTTTTTCAAAGTATCAA+TGG | - | chr1_3:17722753-17722772 | Msa0107400:intron | 20.0% |
| !!! | ATCTTTTTCAAAGTATCAAT+GGG | - | chr1_3:17722754-17722773 | Msa0107400:intron | 20.0% |
| !!! | ATTCAATTCTTTATTTGTCT+TGG | + | chr1_3:17722799-17722818 | None:intergenic | 20.0% |
| !!! | AAGTTATATAAAGGTTTTGA+AGG | - | chr1_3:17722876-17722895 | Msa0107400:intron | 20.0% |
| !!! | ATTGATTGATATATTTTACC+TGG | + | chr1_3:17723029-17723048 | None:intergenic | 20.0% |
| !!! | TATTTTTGGCTTAAAGTAAA+GGG | + | chr1_3:17723096-17723115 | None:intergenic | 20.0% |
| !!! | TTATTTTTGGCTTAAAGTAA+AGG | + | chr1_3:17723097-17723116 | None:intergenic | 20.0% |
| !! | TAATTTCAAAGCAAAGAATA+AGG | - | chr1_3:17723675-17723694 | Msa0107400:CDS | 20.0% |
| ! | AAATAATCTTCCTACTAATG+AGG | - | chr1_3:17720155-17720174 | Msa0107400:three_prime_UTR | 25.0% |
| !!! | GCAAGTGTTTTTAAGATTTT+AGG | + | chr1_3:17720841-17720860 | None:intergenic | 25.0% |
| ! | ATGATAAAAAGATAGGACTT+AGG | + | chr1_3:17720923-17720942 | None:intergenic | 25.0% |
| ! | AAATCAACCCATAATAAAAG+TGG | - | chr1_3:17720944-17720963 | Msa0107400:CDS | 25.0% |
| !!! | CTATCTACCACTTTTATTAT+GGG | + | chr1_3:17720954-17720973 | None:intergenic | 25.0% |
| !!! | ACTATCTACCACTTTTATTA+TGG | + | chr1_3:17720955-17720974 | None:intergenic | 25.0% |
| !! | TTCAAATTTAACTTTCCAAG+TGG | + | chr1_3:17721330-17721349 | None:intergenic | 25.0% |
| ! | TTCATTCTCATATAATGCAT+CGG | + | chr1_3:17721577-17721596 | None:intergenic | 25.0% |
| !! | TAAATCACCATTTTGGATTT+TGG | + | chr1_3:17721672-17721691 | None:intergenic | 25.0% |
| !! | TTATGAGTAAATCACCATTT+TGG | + | chr1_3:17721679-17721698 | None:intergenic | 25.0% |
| !!! | TATGGTTTTAAGATAGATGA+TGG | - | chr1_3:17722103-17722122 | Msa0107400:intron | 25.0% |
| ! | CTATTGAAATTCAACAAATC+CGG | - | chr1_3:17722167-17722186 | Msa0107400:intron | 25.0% |
| ! | AAATTTGGATTCCATATTGT+TGG | + | chr1_3:17722193-17722212 | None:intergenic | 25.0% |
| ! | TTTGGACTATCACTTAAATT+TGG | + | chr1_3:17722208-17722227 | None:intergenic | 25.0% |
| ! | AAGTGATAGTCCAAATATTA+CGG | - | chr1_3:17722213-17722232 | Msa0107400:intron | 25.0% |
| ! | AATAAAATATTGGTGTGTGA+TGG | + | chr1_3:17722247-17722266 | None:intergenic | 25.0% |
| ! | TGGGAATATAAAAATGATTG+GGG | - | chr1_3:17722455-17722474 | Msa0107400:intron | 25.0% |
| ! | AGCATTATAAGAAACTTCTA+CGG | + | chr1_3:17722583-17722602 | None:intergenic | 25.0% |
| !! | TGAAAAAGATTTTTGACATC+AGG | + | chr1_3:17722744-17722763 | None:intergenic | 25.0% |
| !!! | AGGATCCTTTTAATTTCTAA+TGG | + | chr1_3:17722855-17722874 | None:intergenic | 25.0% |
| ! | CAAAACCTTTATATAACTTG+AGG | + | chr1_3:17722875-17722894 | None:intergenic | 25.0% |
| ! | TCTCAATATCCTTCAATTAA+GGG | - | chr1_3:17722957-17722976 | Msa0107400:intron | 25.0% |
| ! | AAATTAACTCCCTTAATTGA+AGG | + | chr1_3:17722969-17722988 | None:intergenic | 25.0% |
| ! | TTTGGATTATATAATTCCAG+AGG | - | chr1_3:17723402-17723421 | Msa0107400:CDS | 25.0% |
| !! | TGGATTTTCCAAATTTCATA+TGG | - | chr1_3:17723540-17723559 | Msa0107400:CDS | 25.0% |
| !! | ACTTTTTCTACCTCATTAGT+AGG | + | chr1_3:17720168-17720187 | None:intergenic | 30.0% |
| !!! | CGTTGTTACTATGTTTTAGT+AGG | - | chr1_3:17720208-17720227 | Msa0107400:three_prime_UTR | 30.0% |
| AATTGGTCAATACTTTGCAT+TGG | - | chr1_3:17720479-17720498 | Msa0107400:CDS | 30.0% | |
| TACTTTGCATTGGATAAAGA+TGG | - | chr1_3:17720489-17720508 | Msa0107400:CDS | 30.0% | |
| ! | CTATGGATTAATGTTGAAAG+TGG | + | chr1_3:17720528-17720547 | None:intergenic | 30.0% |
| CTTTCAACATTAATCCATAG+AGG | - | chr1_3:17720528-17720547 | Msa0107400:CDS | 30.0% | |
| TTAGGTGATCACAATCATTT+AGG | + | chr1_3:17720755-17720774 | None:intergenic | 30.0% | |
| ! | ACCATATTTCTTTAGGAGTT+AGG | - | chr1_3:17720879-17720898 | Msa0107400:intron | 30.0% |
| ! | CCATATTTCTTTAGGAGTTA+GGG | - | chr1_3:17720880-17720899 | Msa0107400:intron | 30.0% |
| !! | GGTACCTCTAAAATTATTGA+GGG | + | chr1_3:17721027-17721046 | None:intergenic | 30.0% |
| !! | TGGTACCTCTAAAATTATTG+AGG | + | chr1_3:17721028-17721047 | None:intergenic | 30.0% |
| !! | CGCTGATTTGTTAAATTGTT+AGG | + | chr1_3:17721178-17721197 | None:intergenic | 30.0% |
| AGATTAGAGTTGTATATGGA+GGG | + | chr1_3:17721224-17721243 | None:intergenic | 30.0% | |
| AAGATTAGAGTTGTATATGG+AGG | + | chr1_3:17721225-17721244 | None:intergenic | 30.0% | |
| TTGTCAAAAGAAGTCAACAA+GGG | + | chr1_3:17721299-17721318 | None:intergenic | 30.0% | |
| TAAAAGTTTGAACACTTGGA+AGG | + | chr1_3:17721441-17721460 | None:intergenic | 30.0% | |
| ! | GTAATATCTATGTTGGTTGA+TGG | + | chr1_3:17721486-17721505 | None:intergenic | 30.0% |
| !! | ATTTGTTTGGGGCATATTTT+CGG | - | chr1_3:17721709-17721728 | Msa0107400:intron | 30.0% |
| AATCAAACCAGACATATATG+AGG | - | chr1_3:17721745-17721764 | Msa0107400:intron | 30.0% | |
| AAAAAGACCTCATATATGTC+TGG | + | chr1_3:17721755-17721774 | None:intergenic | 30.0% | |
| TGGCACAAATTAAAAACCTA+AGG | + | chr1_3:17722049-17722068 | None:intergenic | 30.0% | |
| !!! | GTTTTTAATTTGTGCCATGA+GGG | - | chr1_3:17722052-17722071 | Msa0107400:intron | 30.0% |
| AGTGATAGTCCAAATATTAC+GGG | - | chr1_3:17722214-17722233 | Msa0107400:intron | 30.0% | |
| TATCTTAAACTGACCATTCA+TGG | - | chr1_3:17722426-17722445 | Msa0107400:intron | 30.0% | |
| ATCTTAAACTGACCATTCAT+GGG | - | chr1_3:17722427-17722446 | Msa0107400:intron | 30.0% | |
| GGGAATATAAAAATGATTGG+GGG | - | chr1_3:17722456-17722475 | Msa0107400:intron | 30.0% | |
| AAAAGATTATATGCACTTGC+AGG | - | chr1_3:17722691-17722710 | Msa0107400:intron | 30.0% | |
| AAAGATTATATGCACTTGCA+GGG | - | chr1_3:17722692-17722711 | Msa0107400:intron | 30.0% | |
| ! | TGATATTTTCAACCAAGCAA+TGG | - | chr1_3:17722818-17722837 | Msa0107400:intron | 30.0% |
| ! | GATATTTTCAACCAAGCAAT+GGG | - | chr1_3:17722819-17722838 | Msa0107400:intron | 30.0% |
| TAATTTCTAATGGTCCAGAT+TGG | + | chr1_3:17722845-17722864 | None:intergenic | 30.0% | |
| CTGGACCATTAGAAATTAAA+AGG | - | chr1_3:17722847-17722866 | Msa0107400:intron | 30.0% | |
| AGGATCCTCAAGTTATATAA+AGG | - | chr1_3:17722867-17722886 | Msa0107400:intron | 30.0% | |
| ! | TTGAGAGAGAATGAGTTTTA+GGG | + | chr1_3:17722943-17722962 | None:intergenic | 30.0% |
| ! | ATTGAGAGAGAATGAGTTTT+AGG | + | chr1_3:17722944-17722963 | None:intergenic | 30.0% |
| CTCTCAATATCCTTCAATTA+AGG | - | chr1_3:17722956-17722975 | Msa0107400:intron | 30.0% | |
| ! | TATATTTTACCTGGATGAGT+AGG | + | chr1_3:17723020-17723039 | None:intergenic | 30.0% |
| ACAAAGCTTTACCAAAACAT+GGG | - | chr1_3:17723368-17723387 | Msa0107400:intron | 30.0% | |
| !!! | CTCATGTTTTTAGTAACAAC+TGG | - | chr1_3:17723472-17723491 | Msa0107400:CDS | 30.0% |
| !!! | GTTTTTAGTAACAACTGGAA+AGG | - | chr1_3:17723477-17723496 | Msa0107400:CDS | 30.0% |
| AATTGTGTCCAAACTTTGAA+AGG | - | chr1_3:17723700-17723719 | Msa0107400:CDS | 30.0% | |
| AAGTTACACCTTTCAAAGTT+TGG | + | chr1_3:17723711-17723730 | None:intergenic | 30.0% | |
| ATAGCAGCATTTAGTATTGC+AGG | + | chr1_3:17720240-17720259 | None:intergenic | 35.0% | |
| TTTGCATTGGATAAAGATGG+AGG | - | chr1_3:17720492-17720511 | Msa0107400:CDS | 35.0% | |
| AAACACTGTTACATCCTCTA+TGG | + | chr1_3:17720545-17720564 | None:intergenic | 35.0% | |
| ATAGAGGATGTAACAGTGTT+TGG | - | chr1_3:17720544-17720563 | Msa0107400:CDS | 35.0% | |
| CCCTAACTCCTAAAGAAATA+TGG | + | chr1_3:17720883-17720902 | None:intergenic | 35.0% | |
| ! | CTCTCCCTCAATAATTTTAG+AGG | - | chr1_3:17721020-17721039 | Msa0107400:CDS | 35.0% |
| TACCAAGCATTAGACCAAAA+GGG | - | chr1_3:17721043-17721062 | Msa0107400:CDS | 35.0% | |
| GTTGTCAAAAGAAGTCAACA+AGG | + | chr1_3:17721300-17721319 | None:intergenic | 35.0% | |
| TTGACAACAATTACTCCACT+TGG | - | chr1_3:17721312-17721331 | Msa0107400:intron | 35.0% | |
| ! | AGCAACAATAGAGCATCATT+AGG | + | chr1_3:17721379-17721398 | None:intergenic | 35.0% |
| ACTAGTGCATGATTTGACAT+TGG | - | chr1_3:17721517-17721536 | Msa0107400:intron | 35.0% | |
| ATTTGACATTGGTACCAACA+TGG | - | chr1_3:17721528-17721547 | Msa0107400:intron | 35.0% | |
| ACTAAGTCGGACATAAGTTA+AGG | - | chr1_3:17721902-17721921 | Msa0107400:intron | 35.0% | |
| !!! | GGTTTTTAATTTGTGCCATG+AGG | - | chr1_3:17722051-17722070 | Msa0107400:intron | 35.0% |
| GGTTATAGTCCCGTAATATT+TGG | + | chr1_3:17722226-17722245 | None:intergenic | 35.0% | |
| TGACCATTCATGGGTAAAAT+GGG | - | chr1_3:17722436-17722455 | Msa0107400:intron | 35.0% | |
| ! | ATTCCCATTTTACCCATGAA+TGG | + | chr1_3:17722442-17722461 | None:intergenic | 35.0% |
| AAGATTATATGCACTTGCAG+GGG | - | chr1_3:17722693-17722712 | Msa0107400:intron | 35.0% | |
| TGATGCAAAGGATGCAATAT+TGG | - | chr1_3:17722716-17722735 | Msa0107400:intron | 35.0% | |
| !! | TTTTGAAGGAGTCTCAACAT+TGG | - | chr1_3:17722890-17722909 | Msa0107400:intron | 35.0% |
| !! | ATGTTTGAAAGTGTTCCAAG+TGG | - | chr1_3:17723170-17723189 | Msa0107400:intron | 35.0% |
| !!! | TGGTGATGCCATTTTACTAA+AGG | - | chr1_3:17723190-17723209 | Msa0107400:intron | 35.0% |
| !!! | GATGCCATTTTACTAAAGGT+TGG | - | chr1_3:17723194-17723213 | Msa0107400:intron | 35.0% |
| TGGACCAACCTTTAGTAAAA+TGG | + | chr1_3:17723201-17723220 | None:intergenic | 35.0% | |
| AACTTCACACATTCTTCATC+TGG | + | chr1_3:17723334-17723353 | None:intergenic | 35.0% | |
| !!! | CATGTTTTGGTAAAGCTTTG+TGG | + | chr1_3:17723369-17723388 | None:intergenic | 35.0% |
| CACAAAGCTTTACCAAAACA+TGG | - | chr1_3:17723367-17723386 | Msa0107400:intron | 35.0% | |
| ! | ACAATCACTTTCCCATGTTT+TGG | + | chr1_3:17723382-17723401 | None:intergenic | 35.0% |
| ! | ACATGGGAAAGTGATTGTTT+TGG | - | chr1_3:17723384-17723403 | Msa0107400:CDS | 35.0% |
| TAGACATATTGCTAGGGTTT+GGG | + | chr1_3:17723429-17723448 | None:intergenic | 35.0% | |
| TTAGACATATTGCTAGGGTT+TGG | + | chr1_3:17723430-17723449 | None:intergenic | 35.0% | |
| CATGCTTAGACATATTGCTA+GGG | + | chr1_3:17723435-17723454 | None:intergenic | 35.0% | |
| ACTGCAAGCCATATGAAATT+TGG | + | chr1_3:17723551-17723570 | None:intergenic | 35.0% | |
| TCCAAATCAACACCCTGAAT+TGG | - | chr1_3:17720347-17720366 | Msa0107400:CDS | 40.0% | |
| TCCATTCGTAGCAATGAAGA+TGG | - | chr1_3:17720426-17720445 | Msa0107400:CDS | 40.0% | |
| ACCATCTTCATTGCTACGAA+TGG | + | chr1_3:17720430-17720449 | None:intergenic | 40.0% | |
| GTCTATGCTCTCTCATCAAT+TGG | - | chr1_3:17720462-17720481 | Msa0107400:CDS | 40.0% | |
| GATAAAGATGGAGGCTCTTT+GGG | - | chr1_3:17720501-17720520 | Msa0107400:CDS | 40.0% | |
| ! | TTTCTTTAGGAGTTAGGGCT+AGG | - | chr1_3:17720885-17720904 | Msa0107400:intron | 40.0% |
| ! | TTCTTTAGGAGTTAGGGCTA+GGG | - | chr1_3:17720886-17720905 | Msa0107400:intron | 40.0% |
| GTACCAAGCATTAGACCAAA+AGG | - | chr1_3:17721042-17721061 | Msa0107400:CDS | 40.0% | |
| ! | GCATAATTCAAGGACCCTTT+TGG | + | chr1_3:17721060-17721079 | None:intergenic | 40.0% |
| TCAAAAGAAGTCAACAAGGG+AGG | + | chr1_3:17721296-17721315 | None:intergenic | 40.0% | |
| TGGTACCAACATGGATGAAT+TGG | - | chr1_3:17721537-17721556 | Msa0107400:intron | 40.0% | |
| GGTACCAACATGGATGAATT+GGG | - | chr1_3:17721538-17721557 | Msa0107400:intron | 40.0% | |
| ATGTCCCAATTCATCCATGT+TGG | + | chr1_3:17721545-17721564 | None:intergenic | 40.0% | |
| AACAAATCCGGCCAACAATA+TGG | - | chr1_3:17722179-17722198 | Msa0107400:intron | 40.0% | |
| TTGGATTCCATATTGTTGGC+CGG | + | chr1_3:17722189-17722208 | None:intergenic | 40.0% | |
| CTGACCATTCATGGGTAAAA+TGG | - | chr1_3:17722435-17722454 | Msa0107400:intron | 40.0% | |
| ! | GTCTCAACATTGGTTGATGT+TGG | - | chr1_3:17722900-17722919 | Msa0107400:intron | 40.0% |
| ! | TCAACATTGGTTGATGTTGG+AGG | - | chr1_3:17722903-17722922 | Msa0107400:intron | 40.0% |
| AGTAAAATGGCATCACCACT+TGG | + | chr1_3:17723188-17723207 | None:intergenic | 40.0% | |
| TGCAGCTTGTATGTCATAAC+TGG | - | chr1_3:17723308-17723327 | Msa0107400:intron | 40.0% | |
| GCATGCTTAGACATATTGCT+AGG | + | chr1_3:17723436-17723455 | None:intergenic | 40.0% | |
| !! | GCCAATTCAGGGTGTTGATT+TGG | + | chr1_3:17720351-17720370 | None:intergenic | 45.0% |
| ! | TGAACGCATGTTGACTGTGT+TGG | - | chr1_3:17720380-17720399 | Msa0107400:CDS | 45.0% |
| GGATAAAGATGGAGGCTCTT+TGG | - | chr1_3:17720500-17720519 | Msa0107400:CDS | 45.0% | |
| ! | TCTTTAGGAGTTAGGGCTAG+GGG | - | chr1_3:17720887-17720906 | Msa0107400:intron | 45.0% |
| ! | GACCCTTTTGGTCTAATGCT+TGG | + | chr1_3:17721048-17721067 | None:intergenic | 45.0% |
| GATACTAATGTGTGCCCTCA+TGG | + | chr1_3:17722069-17722088 | None:intergenic | 45.0% | |
| TGGGGGATAGAGATGTAGTT+AGG | - | chr1_3:17722473-17722492 | Msa0107400:intron | 45.0% | |
| ! | ACATTGGTTGATGTTGGAGG+TGG | - | chr1_3:17722906-17722925 | Msa0107400:intron | 45.0% |
| GAGAGCTTATGTAAGAGAGC+TGG | - | chr1_3:17723520-17723539 | Msa0107400:CDS | 45.0% | |
| AAACTCCATCACTCCAGACA+TGG | + | chr1_3:17723584-17723603 | None:intergenic | 45.0% | |
| !!! | TCTAATTTTTATTTTTTTTA+GGG | + | chr1_3:17720642-17720661 | None:intergenic | 5.0% |
| !! | CAAAATATAAAATAAAATAT+TGG | + | chr1_3:17722257-17722276 | None:intergenic | 5.0% |
| !!! | AAAATATTAGATTTTTTTTA+AGG | + | chr1_3:17723275-17723294 | None:intergenic | 5.0% |
| AACACCCTGAATTGGCTGAG+AGG | - | chr1_3:17720355-17720374 | Msa0107400:CDS | 50.0% | |
| CAAGCCTCTCAGCCAATTCA+GGG | + | chr1_3:17720362-17720381 | None:intergenic | 50.0% | |
| TCAAGCCTCTCAGCCAATTC+AGG | + | chr1_3:17720363-17720382 | None:intergenic | 50.0% | |
| AACCAAGCAATGGGCCAATC+TGG | - | chr1_3:17722828-17722847 | Msa0107400:intron | 50.0% | |
| GTTGATGTTGGAGGTGGAGT+AGG | - | chr1_3:17722912-17722931 | Msa0107400:intron | 50.0% | |
| GGTGCATCTTGAACAGCTTG+TGG | + | chr1_3:17722999-17723018 | None:intergenic | 50.0% | |
| CAAGATGCACCTACTCATCC+AGG | - | chr1_3:17723008-17723027 | Msa0107400:intron | 50.0% | |
| CTTGTAGGGCTTGAGCATGT+TGG | - | chr1_3:17723140-17723159 | Msa0107400:intron | 50.0% | |
| AGTGATGTCTCAGCCATGTC+TGG | - | chr1_3:17723568-17723587 | Msa0107400:CDS | 50.0% | |
| CACTTGCAGGGGTGATGCAA+AGG | - | chr1_3:17722704-17722723 | Msa0107400:intron | 55.0% | |
| ! | GTCCAGATTGGCCCATTGCT+TGG | + | chr1_3:17722833-17722852 | None:intergenic | 55.0% |
| GTAGGGCTTGAGCATGTTGG+AGG | - | chr1_3:17723143-17723162 | Msa0107400:intron | 55.0% | |
| ! | TTGCTAGGGTTTGGGACCTC+TGG | + | chr1_3:17723421-17723440 | None:intergenic | 55.0% |
| ! | CTCAGCCATGTCTGGAGTGA+TGG | - | chr1_3:17723576-17723595 | Msa0107400:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 17720090 | 17723851 | 17720090 | ID=Msa0107400;Name=Msa0107400 |
| chr1_3 | mRNA | 17720090 | 17723851 | 17720090 | ID=Msa0107400-mRNA-1;Parent=Msa0107400;Name=Msa0107400-mRNA-1;_AED=0.07;_eAED=0.07;_QI=45|1|1|1|1|1|4|239|370 |
| chr1_3 | exon | 17720090 | 17720628 | 17720090 | ID=Msa0107400-mRNA-1:exon:6661;Parent=Msa0107400-mRNA-1 |
| chr1_3 | exon | 17720730 | 17720794 | 17720730 | ID=Msa0107400-mRNA-1:exon:6660;Parent=Msa0107400-mRNA-1 |
| chr1_3 | exon | 17720912 | 17721228 | 17720912 | ID=Msa0107400-mRNA-1:exon:6659;Parent=Msa0107400-mRNA-1 |
| chr1_3 | exon | 17723376 | 17723851 | 17723376 | ID=Msa0107400-mRNA-1:exon:6658;Parent=Msa0107400-mRNA-1 |
| chr1_3 | five_prime_UTR | 17723807 | 17723851 | 17723807 | ID=Msa0107400-mRNA-1:five_prime_utr;Parent=Msa0107400-mRNA-1 |
| chr1_3 | CDS | 17723376 | 17723806 | 17723376 | ID=Msa0107400-mRNA-1:cds;Parent=Msa0107400-mRNA-1 |
| chr1_3 | CDS | 17720912 | 17721228 | 17720912 | ID=Msa0107400-mRNA-1:cds;Parent=Msa0107400-mRNA-1 |
| chr1_3 | CDS | 17720730 | 17720794 | 17720730 | ID=Msa0107400-mRNA-1:cds;Parent=Msa0107400-mRNA-1 |
| chr1_3 | CDS | 17720329 | 17720628 | 17720329 | ID=Msa0107400-mRNA-1:cds;Parent=Msa0107400-mRNA-1 |
| chr1_3 | three_prime_UTR | 17720090 | 17720328 | 17720090 | ID=Msa0107400-mRNA-1:three_prime_utr;Parent=Msa0107400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
