Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647330 | XP_013456582.1 | 97.799 | 318 | 7 | 0 | 1 | 318 | 1 | 318 | 0.0 | 647 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647330 | A0A072UNH6 | 97.799 | 318 | 7 | 0 | 1 | 318 | 1 | 318 | 0.0 | 647 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0607130 | Msa0647330 | 0.909905 | 3.395337e-82 | -8.615850e-47 |
| Msa0647330 | Msa0690200 | 0.987936 | 4.317172e-172 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647330 | MtrunA17_Chr4g0038691 | 97.799 | 318 | 7 | 0 | 1 | 318 | 1 | 318 | 0.0 | 647 |
| Msa0647330 | MtrunA17_Chr6g0483441 | 46.395 | 319 | 138 | 10 | 6 | 317 | 1 | 293 | 5.29e-76 | 234 |
| Msa0647330 | MtrunA17_Chr4g0053001 | 44.817 | 328 | 161 | 9 | 4 | 318 | 10 | 330 | 4.59e-71 | 223 |
| Msa0647330 | MtrunA17_Chr8g0392551 | 45.426 | 317 | 146 | 10 | 6 | 317 | 1 | 295 | 1.05e-64 | 206 |
| Msa0647330 | MtrunA17_Chr2g0331671 | 38.710 | 310 | 159 | 10 | 24 | 318 | 16 | 309 | 3.54e-56 | 184 |
| Msa0647330 | MtrunA17_Chr6g0486001 | 35.463 | 313 | 175 | 10 | 6 | 307 | 1 | 297 | 8.57e-51 | 170 |
| Msa0647330 | MtrunA17_Chr8g0379281 | 46.222 | 225 | 82 | 7 | 1 | 224 | 1 | 187 | 5.51e-40 | 139 |
| Msa0647330 | MtrunA17_Chr8g0379271 | 61.458 | 96 | 35 | 1 | 223 | 318 | 1 | 94 | 1.11e-33 | 119 |
| Msa0647330 | MtrunA17_Chr3g0091821 | 35.849 | 159 | 90 | 3 | 160 | 315 | 41 | 190 | 5.72e-25 | 99.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647330 | AT2G41990.1 | 53.035 | 313 | 128 | 6 | 6 | 316 | 1 | 296 | 8.93e-95 | 283 |
| Msa0647330 | AT4G35170.1 | 54.362 | 298 | 122 | 7 | 26 | 315 | 5 | 296 | 8.05e-94 | 281 |
| Msa0647330 | AT1G45688.1 | 42.363 | 347 | 153 | 11 | 6 | 315 | 1 | 337 | 6.67e-71 | 223 |
| Msa0647330 | AT5G42860.1 | 43.235 | 340 | 138 | 12 | 6 | 315 | 1 | 315 | 2.58e-70 | 221 |
| Msa0647330 | AT1G45688.2 | 44.758 | 248 | 105 | 11 | 6 | 231 | 1 | 238 | 3.51e-48 | 162 |
| Msa0647330 | AT3G24605.1 | 31.908 | 304 | 169 | 9 | 4 | 296 | 1 | 277 | 1.48e-37 | 135 |
| Msa0647330 | AT3G24600.1 | 37.438 | 203 | 119 | 2 | 114 | 312 | 99 | 297 | 2.47e-36 | 133 |
Find 65 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGATCAAGGGCTTACATTT+TGG | 0.150164 | 4_3:+53335718 | Msa0647330:CDS |
| ACCCTAGGATTTCTTCTTCT+TGG | 0.203956 | 4_3:+53331366 | Msa0647330:CDS |
| GATGAAGGTGTTTATGATTC+TGG | 0.209226 | 4_3:+53331443 | Msa0647330:CDS |
| TAAATTTATTGATGTTCTTT+TGG | 0.218622 | 4_3:+53335848 | Msa0647330:exon |
| AGAAATCCTGCAACTTTCTT+TGG | 0.253597 | 4_3:+53332293 | Msa0647330:CDS |
| CTTGGAAGAAGCTGAATAAT+AGG | 0.299657 | 4_3:+53331384 | Msa0647330:CDS |
| AAAGATAGTAGTGAAAATTT+TGG | 0.301057 | 4_3:-53331283 | None:intergenic |
| TACGGTGGGGTGTCGGTTCT+TGG | 0.311163 | 4_3:+53335635 | Msa0647330:CDS |
| ACCTCAAATGTTAGGTTCAT+TGG | 0.313920 | 4_3:-53335695 | None:intergenic |
| TTAAGTCTACTTTCTATCAT+AGG | 0.334030 | 4_3:+53335750 | Msa0647330:CDS |
| TTGATCTGACCTCAAATGTT+AGG | 0.348971 | 4_3:-53335703 | None:intergenic |
| TTCCAGCTCACATTAGCTTC+TGG | 0.372922 | 4_3:+53332353 | Msa0647330:CDS |
| ATGAAGGTGTTTATGATTCT+GGG | 0.416622 | 4_3:+53331444 | Msa0647330:CDS |
| CAAGCCTCGTGTCATTCTTA+AGG | 0.433666 | 4_3:+53331559 | Msa0647330:CDS |
| GCCAATGAACCTAACATTTG+AGG | 0.444860 | 4_3:+53335694 | Msa0647330:CDS |
| TGAACACCAAAGAAAGTTGC+AGG | 0.445969 | 4_3:-53332299 | None:intergenic |
| TGTCATTGAACTCAACGGTT+AGG | 0.446675 | 4_3:+53332261 | Msa0647330:CDS |
| TTCCAAGAAGAAGAAATCCT+AGG | 0.459677 | 4_3:-53331368 | None:intergenic |
| TCTTATGGTTCTTCTCCTGT+AGG | 0.462684 | 4_3:+53331248 | Msa0647330:CDS |
| TGGTGAACGGTTTGGTGTTG+AGG | 0.475030 | 4_3:-53331168 | None:intergenic |
| GACTCGCGAGAGTGATGAAT+AGG | 0.478886 | 4_3:-53331311 | None:intergenic |
| CGAAGCAGAGTAACGAGAAG+TGG | 0.487540 | 4_3:-53331336 | None:intergenic |
| CCACCACAGCTAACTTCCTC+TGG | 0.510776 | 4_3:-53335589 | None:intergenic |
| TGGTGAGGTGGTGAACCTAC+AGG | 0.511052 | 4_3:-53331263 | None:intergenic |
| TCCAAGAAGAAGAAATCCTA+GGG | 0.519055 | 4_3:-53331367 | None:intergenic |
| GAGAACTTGAATGTACAATC+TGG | 0.519325 | 4_3:+53332206 | Msa0647330:CDS |
| GACCAGAAGCTAATGTGAGC+TGG | 0.519368 | 4_3:-53332355 | None:intergenic |
| CCAGAGGAAGTTAGCTGTGG+TGG | 0.524543 | 4_3:+53335589 | Msa0647330:CDS |
| TAACATTTGAGGTCAGATCA+AGG | 0.525368 | 4_3:+53335705 | Msa0647330:CDS |
| CAATCTGGTAACGATGGGAC+GGG | 0.529711 | 4_3:+53332221 | Msa0647330:CDS |
| AATCTGGTAACGATGGGACG+GGG | 0.529769 | 4_3:+53332222 | Msa0647330:CDS |
| CGACGAGGTGGTGAACGGTT+TGG | 0.536473 | 4_3:-53331176 | None:intergenic |
| TGGAAATAGCTAAGTTGCAT+AGG | 0.545685 | 4_3:-53332335 | None:intergenic |
| CCCCACCGTAGAGTGGAACT+TGG | 0.548890 | 4_3:-53335622 | None:intergenic |
| GCTCACATTAGCTTCTGGTC+AGG | 0.549576 | 4_3:+53332358 | Msa0647330:CDS |
| ATGATTCTGGGAGGAATGTG+AGG | 0.550183 | 4_3:+53331456 | Msa0647330:CDS |
| TGATCTTGATGAAGAGGATG+AGG | 0.555043 | 4_3:+53331418 | Msa0647330:CDS |
| TCCACTCTACGGTGGGGTGT+CGG | 0.555370 | 4_3:+53335628 | Msa0647330:CDS |
| ACCAAGTTCCACTCTACGGT+GGG | 0.556211 | 4_3:+53335621 | Msa0647330:CDS |
| TTCAATGACAACATATCTGT+TGG | 0.560744 | 4_3:-53332248 | None:intergenic |
| TACAAGAGTTCTATCAGTCA+AGG | 0.565497 | 4_3:+53335561 | Msa0647330:CDS |
| AAGTTAGCTGTGGTGGTGCA+TGG | 0.569699 | 4_3:+53335596 | Msa0647330:CDS |
| GTGGTCGACGAGGTGGTGAA+CGG | 0.571771 | 4_3:-53331181 | None:intergenic |
| AACATTTGAGGTCAGATCAA+GGG | 0.576833 | 4_3:+53335706 | Msa0647330:CDS |
| GGACTTTGAACATAGTAAAG+TGG | 0.576967 | 4_3:-53331200 | None:intergenic |
| ACCGACACCCCACCGTAGAG+TGG | 0.581120 | 4_3:-53335629 | None:intergenic |
| GGATACCAAGTTCCACTCTA+CGG | 0.586208 | 4_3:+53335617 | Msa0647330:CDS |
| AAGCTGAATAATAGGAATGG+TGG | 0.590755 | 4_3:+53331392 | Msa0647330:CDS |
| AATGTACAATCTGGTAACGA+TGG | 0.591331 | 4_3:+53332215 | Msa0647330:CDS |
| TGGTGATGATCTTGATGAAG+AGG | 0.591542 | 4_3:+53331412 | Msa0647330:CDS |
| ATCAGTCAAGGAAGAGCCAG+AGG | 0.595434 | 4_3:+53335573 | Msa0647330:CDS |
| ACAATCTGGTAACGATGGGA+CGG | 0.603147 | 4_3:+53332220 | Msa0647330:CDS |
| ATGTACAATCTGGTAACGAT+GGG | 0.608310 | 4_3:+53332216 | Msa0647330:CDS |
| AAGAAGCTGAATAATAGGAA+TGG | 0.611476 | 4_3:+53331389 | Msa0647330:CDS |
| ATCTGGTAACGATGGGACGG+GGG | 0.626619 | 4_3:+53332223 | Msa0647330:CDS |
| TATGTTGTCATTGAACTCAA+CGG | 0.628115 | 4_3:+53332256 | Msa0647330:CDS |
| AGAAGAAACAACAAACAGCA+TGG | 0.633145 | 4_3:+53331136 | Msa0647330:CDS |
| GAAGAGGATGAGGATGATGA+AGG | 0.642247 | 4_3:+53331428 | Msa0647330:CDS |
| GAGCCAGAGGAAGTTAGCTG+TGG | 0.644458 | 4_3:+53335586 | Msa0647330:CDS |
| TAGTAAAGTGGTCGACGAGG+TGG | 0.650497 | 4_3:-53331188 | None:intergenic |
| TACCAAGTTCCACTCTACGG+TGG | 0.659688 | 4_3:+53335620 | Msa0647330:CDS |
| ACATAGTAAAGTGGTCGACG+AGG | 0.674681 | 4_3:-53331191 | None:intergenic |
| CCAAGTTCCACTCTACGGTG+GGG | 0.681684 | 4_3:+53335622 | Msa0647330:CDS |
| AAGGTGTTTATGATTCTGGG+AGG | 0.699466 | 4_3:+53331447 | Msa0647330:CDS |
| GTTACCTTAAGAATGACACG+AGG | 0.801590 | 4_3:-53331563 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAAATAAAATAAATAA+TGG | + | chr4_3:53332154-53332173 | Msa0647330:intron | 0.0% |
| !! | ATTAAATATTTCACATAAAT+TGG | - | chr4_3:53332065-53332084 | None:intergenic | 10.0% |
| !! | AATATTTAATTAAATGTTGT+AGG | + | chr4_3:53332075-53332094 | Msa0647330:intron | 10.0% |
| !! | ATATTTAATTAAATGTTGTA+GGG | + | chr4_3:53332076-53332095 | Msa0647330:intron | 10.0% |
| !!! | GATAATTTTGATTATTTAAA+AGG | + | chr4_3:53332461-53332480 | Msa0647330:intron | 10.0% |
| !! | TAGTTCTTTATATATATATA+TGG | - | chr4_3:53334269-53334288 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTGTTCATT+TGG | + | chr4_3:53334993-53335012 | Msa0647330:intron | 10.0% |
| !!! | TTTTAATTTAGTTTCTATGA+TGG | + | chr4_3:53331721-53331740 | Msa0647330:intron | 15.0% |
| !! | CTTAAATAATTACTCATAAA+TGG | + | chr4_3:53331996-53332015 | Msa0647330:intron | 15.0% |
| !! | AAATAATGGTTGAATAAATA+TGG | + | chr4_3:53332168-53332187 | Msa0647330:intron | 15.0% |
| !!! | AGTTTTCAAAATTATCAAAA+TGG | + | chr4_3:53332580-53332599 | Msa0647330:intron | 15.0% |
| !!! | TTTGTTTTTGCATTAAAAAA+TGG | + | chr4_3:53333372-53333391 | Msa0647330:intron | 15.0% |
| !! | GCTATACTATATATATATAT+AGG | + | chr4_3:53334059-53334078 | Msa0647330:intron | 15.0% |
| !!! | TACACTTTTTTAAATGATAA+AGG | - | chr4_3:53334444-53334463 | None:intergenic | 15.0% |
| !! | TATAGAAAAAAGTTGTTTAA+GGG | - | chr4_3:53334517-53334536 | None:intergenic | 15.0% |
| !! | TTATAGAAAAAAGTTGTTTA+AGG | - | chr4_3:53334518-53334537 | None:intergenic | 15.0% |
| !!! | ACATTGATAATTTTTTACAT+TGG | - | chr4_3:53335106-53335125 | None:intergenic | 15.0% |
| !!! | TAAATTTATTGATGTTCTTT+TGG | + | chr4_3:53335848-53335867 | Msa0647330:exon | 15.0% |
| !!! | AAATTTATTGATGTTCTTTT+GGG | + | chr4_3:53335849-53335868 | Msa0647330:exon | 15.0% |
| !! | AAAAAGAGAAGAAGAAAAAT+GGG | + | chr4_3:53331083-53331102 | Msa0647330:exon | 20.0% |
| !!! | AAAGATAGTAGTGAAAATTT+TGG | - | chr4_3:53331286-53331305 | None:intergenic | 20.0% |
| !! | ATATATATAAATGCAGAAAG+TGG | - | chr4_3:53331967-53331986 | None:intergenic | 20.0% |
| !! | AAATAATTACTCATAAATGG+AGG | + | chr4_3:53331999-53332018 | Msa0647330:intron | 20.0% |
| !! | AAACAAATATTAGAAGAATG+AGG | - | chr4_3:53332124-53332143 | None:intergenic | 20.0% |
| !!! | GTAGAGTTTTTAGAAAATTA+CGG | - | chr4_3:53332555-53332574 | None:intergenic | 20.0% |
| !!! | ATGAATGGAATTTTTTTATG+AGG | + | chr4_3:53332882-53332901 | Msa0647330:intron | 20.0% |
| !!! | TGAATGGAATTTTTTTATGA+GGG | + | chr4_3:53332883-53332902 | Msa0647330:intron | 20.0% |
| !!! | ACATTTTAGTCATTTACTTT+GGG | + | chr4_3:53333184-53333203 | Msa0647330:intron | 20.0% |
| !! | CAATTAAATTGAACTTTGTT+CGG | - | chr4_3:53333251-53333270 | None:intergenic | 20.0% |
| !! | AATTTAATTGGTACACTTTA+TGG | + | chr4_3:53333261-53333280 | Msa0647330:intron | 20.0% |
| !! | ATTTAATTGGTACACTTTAT+GGG | + | chr4_3:53333262-53333281 | Msa0647330:intron | 20.0% |
| !!! | TGCATTACATTTTGAATTAT+TGG | + | chr4_3:53333503-53333522 | Msa0647330:intron | 20.0% |
| !!! | ATTACGTTTTTTAGATAAAC+AGG | + | chr4_3:53333530-53333549 | Msa0647330:intron | 20.0% |
| !!! | TTACGTTTTTTAGATAAACA+GGG | + | chr4_3:53333531-53333550 | Msa0647330:intron | 20.0% |
| !!! | TCTTTTTTCTCTTTTTTCAT+TGG | + | chr4_3:53333636-53333655 | Msa0647330:intron | 20.0% |
| !!! | AAAAGAATTGTTTTTATGAC+TGG | + | chr4_3:53333909-53333928 | Msa0647330:intron | 20.0% |
| !! | ACATCTTCATAAAAATTAGT+TGG | + | chr4_3:53334173-53334192 | Msa0647330:intron | 20.0% |
| !!! | GTTTTTTGTATTGAAAATTG+AGG | - | chr4_3:53334337-53334356 | None:intergenic | 20.0% |
| !! | TCTATAATAAAGATTGTTGT+TGG | + | chr4_3:53334531-53334550 | Msa0647330:intron | 20.0% |
| !!! | TTGTTGGTGTTATTTTAAAT+TGG | + | chr4_3:53334593-53334612 | Msa0647330:intron | 20.0% |
| !!! | TTTTCGCTAGTTAATAATAA+TGG | + | chr4_3:53334744-53334763 | Msa0647330:intron | 20.0% |
| !!! | TTTTTTCATGTATAGTTATG+TGG | - | chr4_3:53334927-53334946 | None:intergenic | 20.0% |
| !! | TATTCAAGAAATAAAACTCT+AGG | + | chr4_3:53335174-53335193 | Msa0647330:intron | 20.0% |
| !! | AACTCTATACTTAAATTAAG+TGG | + | chr4_3:53335217-53335236 | Msa0647330:intron | 20.0% |
| !! | ACTCTATACTTAAATTAAGT+GGG | + | chr4_3:53335218-53335237 | Msa0647330:intron | 20.0% |
| ! | CAAAAAGAGAAGAAGAAAAA+TGG | + | chr4_3:53331082-53331101 | Msa0647330:exon | 25.0% |
| !!! | AAGACATTTTTTCAACATCA+TGG | - | chr4_3:53331232-53331251 | None:intergenic | 25.0% |
| ! | GATGTTGAAAAAATGTCTTA+TGG | + | chr4_3:53331233-53331252 | Msa0647330:CDS | 25.0% |
| ! | AAAAAAACAATCCTAGACTT+TGG | + | chr4_3:53332022-53332041 | Msa0647330:intron | 25.0% |
| ! | TTGCAATAAATTTAGCAGTA+GGG | - | chr4_3:53332401-53332420 | None:intergenic | 25.0% |
| ! | TTTGCAATAAATTTAGCAGT+AGG | - | chr4_3:53332402-53332421 | None:intergenic | 25.0% |
| !!! | GAATTTTTTTATGAGGGTTT+GGG | + | chr4_3:53332889-53332908 | Msa0647330:intron | 25.0% |
| !!! | GACATTTTAGTCATTTACTT+TGG | + | chr4_3:53333183-53333202 | Msa0647330:intron | 25.0% |
| ! | CGAACAAAGTTCAATTTAAT+TGG | + | chr4_3:53333249-53333268 | Msa0647330:intron | 25.0% |
| ! | TTTAATTGGTACACTTTATG+GGG | + | chr4_3:53333263-53333282 | Msa0647330:intron | 25.0% |
| !!! | TACGTTTTTTAGATAAACAG+GGG | + | chr4_3:53333532-53333551 | Msa0647330:intron | 25.0% |
| !! | TTTTTATGACTGGTGTTTTT+TGG | + | chr4_3:53333919-53333938 | Msa0647330:intron | 25.0% |
| !!! | TTTTATGACTGGTGTTTTTT+GGG | + | chr4_3:53333920-53333939 | Msa0647330:intron | 25.0% |
| ! | ACAAAAAGAAAGAATAGTAC+TGG | + | chr4_3:53334032-53334051 | Msa0647330:intron | 25.0% |
| ! | GCAAAGTTATAACTAAAAAG+TGG | - | chr4_3:53334147-53334166 | None:intergenic | 25.0% |
| !! | AGTTGTTTAAGGGTATAATT+GGG | - | chr4_3:53334507-53334526 | None:intergenic | 25.0% |
| !! | AAGTTGTTTAAGGGTATAAT+TGG | - | chr4_3:53334508-53334527 | None:intergenic | 25.0% |
| ! | ATTATTAACTAGCGAAAAGA+CGG | - | chr4_3:53334742-53334761 | None:intergenic | 25.0% |
| ! | CATAGGTTAAGACAAAATTA+AGG | - | chr4_3:53334794-53334813 | None:intergenic | 25.0% |
| !! | ATTTTGTCTTAACCTATGTT+TGG | + | chr4_3:53334796-53334815 | Msa0647330:intron | 25.0% |
| ! | TTAAATGTAGAACCAAACAT+AGG | - | chr4_3:53334811-53334830 | None:intergenic | 25.0% |
| ! | TTGTTCATTTGGTTAATTAG+AGG | + | chr4_3:53335004-53335023 | Msa0647330:intron | 25.0% |
| !! | TCTAGGAAAAAGTTTTTCTT+TGG | + | chr4_3:53335191-53335210 | Msa0647330:intron | 25.0% |
| ! | CTCTATACTTAAATTAAGTG+GGG | + | chr4_3:53335219-53335238 | Msa0647330:intron | 25.0% |
| ! | ATACTCATATTCATATGAGT+TGG | - | chr4_3:53335336-53335355 | None:intergenic | 25.0% |
| ! | TTAAGTCTACTTTCTATCAT+AGG | + | chr4_3:53335750-53335769 | Msa0647330:CDS | 25.0% |
| !! | AATTAAGATGTTTTCCAAGA+CGG | - | chr4_3:53335805-53335824 | None:intergenic | 25.0% |
| ! | TTTTCAACATCATGGTTTGA+AGG | - | chr4_3:53331224-53331243 | None:intergenic | 30.0% |
| !! | TAGTAGTGAAAATTTTGGTG+AGG | - | chr4_3:53331281-53331300 | None:intergenic | 30.0% |
| AAGAAGCTGAATAATAGGAA+TGG | + | chr4_3:53331389-53331408 | Msa0647330:CDS | 30.0% | |
| !! | ATGAAGGTGTTTATGATTCT+GGG | + | chr4_3:53331444-53331463 | Msa0647330:CDS | 30.0% |
| !!! | TGTGTTTTCGTTGATTCTTT+GGG | + | chr4_3:53331520-53331539 | Msa0647330:CDS | 30.0% |
| TTCAATGACAACATATCTGT+TGG | - | chr4_3:53332251-53332270 | None:intergenic | 30.0% | |
| TATGTTGTCATTGAACTCAA+CGG | + | chr4_3:53332256-53332275 | Msa0647330:CDS | 30.0% | |
| TGCAATAAATTTAGCAGTAG+GGG | - | chr4_3:53332400-53332419 | None:intergenic | 30.0% | |
| CGTGATAGGTATTTAAGAAT+TGG | - | chr4_3:53332610-53332629 | None:intergenic | 30.0% | |
| TTAAACCTACATGGAAAAAG+AGG | + | chr4_3:53332633-53332652 | Msa0647330:intron | 30.0% | |
| CGATTAACATCACATGATAT+TGG | - | chr4_3:53332683-53332702 | None:intergenic | 30.0% | |
| GAAAATTACTTGTGACATTC+TGG | - | chr4_3:53332707-53332726 | None:intergenic | 30.0% | |
| ATGTGACATTGGTATGATAT+CGG | - | chr4_3:53332784-53332803 | None:intergenic | 30.0% | |
| GGGTAACATTCAAATGATAT+TGG | - | chr4_3:53332819-53332838 | None:intergenic | 30.0% | |
| ! | TCAAGGTAACAGTTTTTCTA+GGG | - | chr4_3:53332839-53332858 | None:intergenic | 30.0% |
| TAGAAAAACTGTTACCTTGA+GGG | + | chr4_3:53332839-53332858 | Msa0647330:intron | 30.0% | |
| !!! | GGAATTTTTTTATGAGGGTT+TGG | + | chr4_3:53332888-53332907 | Msa0647330:intron | 30.0% |
| CAAAATTGCGTATCAATTTG+AGG | + | chr4_3:53332952-53332971 | Msa0647330:intron | 30.0% | |
| TTATACATCACCCTACTTAT+GGG | + | chr4_3:53333317-53333336 | Msa0647330:intron | 30.0% | |
| ! | TCTTACCTATTGAACTTGTT+GGG | - | chr4_3:53333352-53333371 | None:intergenic | 30.0% |
| ATCTTACCTATTGAACTTGT+TGG | - | chr4_3:53333353-53333372 | None:intergenic | 30.0% | |
| !!! | CTGTATTTTTTGTCTACAAG+AGG | + | chr4_3:53333559-53333578 | Msa0647330:intron | 30.0% |
| ! | TTTTCATTGGCCAAAAACAA+TGG | + | chr4_3:53333649-53333668 | Msa0647330:intron | 30.0% |
| ! | TTTTCTCTCTCCATTGTTTT+TGG | - | chr4_3:53333662-53333681 | None:intergenic | 30.0% |
| GTCAAAAAGTTGTCATAAAG+TGG | + | chr4_3:53333729-53333748 | Msa0647330:intron | 30.0% | |
| TTGTACAAATACCATTTCTC+AGG | + | chr4_3:53333752-53333771 | Msa0647330:intron | 30.0% | |
| ACATAAAAACTCCTGAGAAA+TGG | - | chr4_3:53333766-53333785 | None:intergenic | 30.0% | |
| ! | AGGAGTTTTTATGTTTGAGT+TGG | + | chr4_3:53333772-53333791 | Msa0647330:intron | 30.0% |
| !! | GGAGTTTTTATGTTTGAGTT+GGG | + | chr4_3:53333773-53333792 | Msa0647330:intron | 30.0% |
| ! | TTGGGAAAGATTTTAAACGT+TGG | + | chr4_3:53333791-53333810 | Msa0647330:intron | 30.0% |
| ! | TGGGAAAGATTTTAAACGTT+GGG | + | chr4_3:53333792-53333811 | Msa0647330:intron | 30.0% |
| !!! | ACGTTGGGTTTTACTTTTTT+TGG | + | chr4_3:53333807-53333826 | Msa0647330:intron | 30.0% |
| !!! | TTGGGTTTTACTTTTTTTGG+TGG | + | chr4_3:53333810-53333829 | Msa0647330:intron | 30.0% |
| !!! | GTGTTTTTTGGGTATTTAGA+TGG | + | chr4_3:53333931-53333950 | Msa0647330:intron | 30.0% |
| ! | ACTATCCTTTTCAGAACTTT+TGG | + | chr4_3:53334285-53334304 | Msa0647330:intron | 30.0% |
| ! | CTATCCTTTTCAGAACTTTT+GGG | + | chr4_3:53334286-53334305 | Msa0647330:intron | 30.0% |
| TTATTAACTAGCGAAAAGAC+GGG | - | chr4_3:53334741-53334760 | None:intergenic | 30.0% | |
| ! | TTAACATGTTAAGTTGCTCT+TGG | + | chr4_3:53334827-53334846 | Msa0647330:intron | 30.0% |
| ! | TAACATGTTAAGTTGCTCTT+GGG | + | chr4_3:53334828-53334847 | Msa0647330:intron | 30.0% |
| !! | GACTTATTTTCTCATACAAG+TGG | - | chr4_3:53335056-53335075 | None:intergenic | 30.0% |
| TTAAATTAAGTGGGGATAAC+TGG | + | chr4_3:53335227-53335246 | Msa0647330:intron | 30.0% | |
| TTGTAATGTAAACTCCCTAA+GGG | - | chr4_3:53335271-53335290 | None:intergenic | 30.0% | |
| TGAATGCATCAATACGTAAA+TGG | + | chr4_3:53335383-53335402 | Msa0647330:intron | 30.0% | |
| !! | AGATGTTCAATCACTTTTCA+TGG | + | chr4_3:53335776-53335795 | Msa0647330:CDS | 30.0% |
| ! | TTTATTGATGTTCTTTTGGG+TGG | + | chr4_3:53335852-53335871 | Msa0647330:three_prime_UTR | 30.0% |
| AAGAGAAGAAGAAAAATGGG+AGG | + | chr4_3:53331086-53331105 | Msa0647330:exon | 35.0% | |
| AGAAGAAACAACAAACAGCA+TGG | + | chr4_3:53331136-53331155 | Msa0647330:CDS | 35.0% | |
| GGACTTTGAACATAGTAAAG+TGG | - | chr4_3:53331203-53331222 | None:intergenic | 35.0% | |
| !! | TAGTGAAAATTTTGGTGAGG+TGG | - | chr4_3:53331278-53331297 | None:intergenic | 35.0% |
| TCCAAGAAGAAGAAATCCTA+GGG | - | chr4_3:53331370-53331389 | None:intergenic | 35.0% | |
| TTCCAAGAAGAAGAAATCCT+AGG | - | chr4_3:53331371-53331390 | None:intergenic | 35.0% | |
| CTTGGAAGAAGCTGAATAAT+AGG | + | chr4_3:53331384-53331403 | Msa0647330:CDS | 35.0% | |
| AAGCTGAATAATAGGAATGG+TGG | + | chr4_3:53331392-53331411 | Msa0647330:CDS | 35.0% | |
| !! | GATGAAGGTGTTTATGATTC+TGG | + | chr4_3:53331443-53331462 | Msa0647330:CDS | 35.0% |
| !!! | CTGTGTTTTCGTTGATTCTT+TGG | + | chr4_3:53331519-53331538 | Msa0647330:CDS | 35.0% |
| !!! | GTGTTTTCGTTGATTCTTTG+GGG | + | chr4_3:53331521-53331540 | Msa0647330:CDS | 35.0% |
| CAACTAGGTATGAAAAATGC+AGG | - | chr4_3:53331600-53331619 | None:intergenic | 35.0% | |
| ! | CTGCATTTTTCATACCTAGT+TGG | + | chr4_3:53331598-53331617 | Msa0647330:intron | 35.0% |
| !!! | TAGTTGGTTTTGTTGTGACT+CGG | + | chr4_3:53331614-53331633 | Msa0647330:intron | 35.0% |
| !! | TCCAAAATAGCTTTGATACG+AGG | - | chr4_3:53331798-53331817 | None:intergenic | 35.0% |
| CAAGTTTGAACTCAATCAAC+TGG | + | chr4_3:53331867-53331886 | Msa0647330:intron | 35.0% | |
| AACAATCCTAGACTTTGGAT+AGG | + | chr4_3:53332027-53332046 | Msa0647330:intron | 35.0% | |
| ATGAGGAAGAACATGAATCA+GGG | - | chr4_3:53332107-53332126 | None:intergenic | 35.0% | |
| AATGAGGAAGAACATGAATC+AGG | - | chr4_3:53332108-53332127 | None:intergenic | 35.0% | |
| GAGAACTTGAATGTACAATC+TGG | + | chr4_3:53332206-53332225 | Msa0647330:CDS | 35.0% | |
| ! | AATGTACAATCTGGTAACGA+TGG | + | chr4_3:53332215-53332234 | Msa0647330:CDS | 35.0% |
| ! | ATGTACAATCTGGTAACGAT+GGG | + | chr4_3:53332216-53332235 | Msa0647330:CDS | 35.0% |
| AGAAATCCTGCAACTTTCTT+TGG | + | chr4_3:53332293-53332312 | Msa0647330:CDS | 35.0% | |
| TGGAAATAGCTAAGTTGCAT+AGG | - | chr4_3:53332338-53332357 | None:intergenic | 35.0% | |
| ACAAATCGAAACTACGCTAA+TGG | - | chr4_3:53332488-53332507 | None:intergenic | 35.0% | |
| TGTAGGTTTAACATCGTGAT+AGG | - | chr4_3:53332624-53332643 | None:intergenic | 35.0% | |
| ATCACGATGTTAAACCTACA+TGG | + | chr4_3:53332624-53332643 | Msa0647330:intron | 35.0% | |
| ! | CTCAAGGTAACAGTTTTTCT+AGG | - | chr4_3:53332840-53332859 | None:intergenic | 35.0% |
| CTAGAAAAACTGTTACCTTG+AGG | + | chr4_3:53332838-53332857 | Msa0647330:intron | 35.0% | |
| TTGAGGCCAGTAAGAAAAAA+AGG | + | chr4_3:53332969-53332988 | Msa0647330:intron | 35.0% | |
| !!! | CACACTCCTTTTTTTCTTAC+TGG | - | chr4_3:53332978-53332997 | None:intergenic | 35.0% |
| CAGTAAGAAAAAAAGGAGTG+TGG | + | chr4_3:53332976-53332995 | Msa0647330:intron | 35.0% | |
| TTGAGTAAAGAGCAGAATTC+CGG | - | chr4_3:53333019-53333038 | None:intergenic | 35.0% | |
| ! | AATTTTGCTCTTTACCCAGA+TGG | - | chr4_3:53333221-53333240 | None:intergenic | 35.0% |
| TAAGTAGGGTGATGTATAAG+AGG | - | chr4_3:53333316-53333335 | None:intergenic | 35.0% | |
| CTTATACATCACCCTACTTA+TGG | + | chr4_3:53333316-53333335 | Msa0647330:intron | 35.0% | |
| !! | CTTACCTATTGAACTTGTTG+GGG | - | chr4_3:53333351-53333370 | None:intergenic | 35.0% |
| TAACCAAGAAATGGGGAAAT+GGG | - | chr4_3:53333420-53333439 | None:intergenic | 35.0% | |
| ATAACCAAGAAATGGGGAAA+TGG | - | chr4_3:53333421-53333440 | None:intergenic | 35.0% | |
| ATTTCCCCATTTCTTGGTTA+TGG | + | chr4_3:53333420-53333439 | Msa0647330:intron | 35.0% | |
| TTTCCCCATTTCTTGGTTAT+GGG | + | chr4_3:53333421-53333440 | Msa0647330:intron | 35.0% | |
| TAAGCCCATAACCAAGAAAT+GGG | - | chr4_3:53333428-53333447 | None:intergenic | 35.0% | |
| !!! | TTTTTTTGGTGGTGAAACGT+TGG | + | chr4_3:53333821-53333840 | Msa0647330:intron | 35.0% |
| TTGCTAAAAGACACCTTCAT+GGG | - | chr4_3:53334225-53334244 | None:intergenic | 35.0% | |
| ATTGCTAAAAGACACCTTCA+TGG | - | chr4_3:53334103-53334122 | None:intergenic | 35.0% | |
| ! | CTAGAAGACGCATTTTATGA+AGG | - | chr4_3:53334241-53334260 | None:intergenic | 35.0% |
| CCTCATCAAGTTAAAGCTTA+CGG | + | chr4_3:53334952-53334971 | Msa0647330:intron | 35.0% | |
| CTCATCAAGTTAAAGCTTAC+GGG | + | chr4_3:53334953-53334972 | Msa0647330:intron | 35.0% | |
| TCATCAAGTTAAAGCTTACG+GGG | + | chr4_3:53334954-53334973 | Msa0647330:intron | 35.0% | |
| CTTGTAATGTAAACTCCCTA+AGG | - | chr4_3:53335272-53335291 | None:intergenic | 35.0% | |
| TAATTCCAGTGAGTTGTGTA+GGG | + | chr4_3:53335300-53335319 | Msa0647330:intron | 35.0% | |
| TGCATCAATACGTAAATGGT+CGG | + | chr4_3:53335387-53335406 | Msa0647330:intron | 35.0% | |
| !! | GATGCAGATTTTGATGAGTT+GGG | - | chr4_3:53335492-53335511 | None:intergenic | 35.0% |
| !! | TGATGCAGATTTTGATGAGT+TGG | - | chr4_3:53335493-53335512 | None:intergenic | 35.0% |
| TACAAGAGTTCTATCAGTCA+AGG | + | chr4_3:53335561-53335580 | Msa0647330:CDS | 35.0% | |
| ACCTCAAATGTTAGGTTCAT+TGG | - | chr4_3:53335698-53335717 | None:intergenic | 35.0% | |
| TTGATCTGACCTCAAATGTT+AGG | - | chr4_3:53335706-53335725 | None:intergenic | 35.0% | |
| ! | TAACATTTGAGGTCAGATCA+AGG | + | chr4_3:53335705-53335724 | Msa0647330:CDS | 35.0% |
| ! | AACATTTGAGGTCAGATCAA+GGG | + | chr4_3:53335706-53335725 | Msa0647330:CDS | 35.0% |
| ! | AGATCAAGGGCTTACATTTT+GGG | + | chr4_3:53335719-53335738 | Msa0647330:CDS | 35.0% |
| ! | GTGCTCTTTTTACAAAAGAG+AGG | - | chr4_3:53335885-53335904 | None:intergenic | 35.0% |
| TCTTATGGTTCTTCTCCTGT+AGG | + | chr4_3:53331248-53331267 | Msa0647330:CDS | 40.0% | |
| ACCCTAGGATTTCTTCTTCT+TGG | + | chr4_3:53331366-53331385 | Msa0647330:CDS | 40.0% | |
| ! | TGGTGATGATCTTGATGAAG+AGG | + | chr4_3:53331412-53331431 | Msa0647330:CDS | 40.0% |
| TGATCTTGATGAAGAGGATG+AGG | + | chr4_3:53331418-53331437 | Msa0647330:CDS | 40.0% | |
| ! | AAGGTGTTTATGATTCTGGG+AGG | + | chr4_3:53331447-53331466 | Msa0647330:CDS | 40.0% |
| GTTACCTTAAGAATGACACG+AGG | - | chr4_3:53331566-53331585 | None:intergenic | 40.0% | |
| TGAAAAATGCAGGAGGAAGA+AGG | - | chr4_3:53331590-53331609 | None:intergenic | 40.0% | |
| CTAGGTATGAAAAATGCAGG+AGG | - | chr4_3:53331597-53331616 | None:intergenic | 40.0% | |
| GAGTCACAACAAAACCAACT+AGG | - | chr4_3:53331615-53331634 | None:intergenic | 40.0% | |
| !! | TTGTTGTGACTCGGTATGTT+CGG | + | chr4_3:53331623-53331642 | Msa0647330:intron | 40.0% |
| CAGGAGATATGTCAGAATCA+CGG | + | chr4_3:53331651-53331670 | Msa0647330:intron | 40.0% | |
| ! | GCCTCGTATCAAAGCTATTT+TGG | + | chr4_3:53331794-53331813 | Msa0647330:intron | 40.0% |
| AATCAACTGGTCAGAGTCAA+TGG | + | chr4_3:53331880-53331899 | Msa0647330:intron | 40.0% | |
| CTTCATCCTATCCAAAGTCT+AGG | - | chr4_3:53332036-53332055 | None:intergenic | 40.0% | |
| GAAGAACATGAATCAGGGTA+AGG | - | chr4_3:53332102-53332121 | None:intergenic | 40.0% | |
| TGTCATTGAACTCAACGGTT+AGG | + | chr4_3:53332261-53332280 | Msa0647330:CDS | 40.0% | |
| TGAACACCAAAGAAAGTTGC+AGG | - | chr4_3:53332302-53332321 | None:intergenic | 40.0% | |
| ! | TGACACCTCTTTTTCCATGT+AGG | - | chr4_3:53332641-53332660 | None:intergenic | 40.0% |
| !! | ATGGAAAAAGAGGTGTCACT+TGG | + | chr4_3:53332643-53332662 | Msa0647330:intron | 40.0% |
| !! | TGGAAAAAGAGGTGTCACTT+GGG | + | chr4_3:53332644-53332663 | Msa0647330:intron | 40.0% |
| GTGTCAATGTCATGTGACAT+TGG | - | chr4_3:53332795-53332814 | None:intergenic | 40.0% | |
| GGAAACACAGACAAATTTGC+CGG | + | chr4_3:53332997-53333016 | Msa0647330:intron | 40.0% | |
| !! | AGACCCAGCTTTTTAGCATA+TGG | - | chr4_3:53333289-53333308 | None:intergenic | 40.0% |
| AATCCCATTTCCCCATTTCT+TGG | + | chr4_3:53333414-53333433 | Msa0647330:intron | 40.0% | |
| AAGCCCATAACCAAGAAATG+GGG | - | chr4_3:53333427-53333446 | None:intergenic | 40.0% | |
| GTAAGCCCATAACCAAGAAA+TGG | - | chr4_3:53333429-53333448 | None:intergenic | 40.0% | |
| ! | TTTTAGCAATCCACACCTCA+AGG | + | chr4_3:53334113-53334132 | Msa0647330:intron | 40.0% |
| AAAGTGGAAATCACACCTTG+AGG | - | chr4_3:53334131-53334150 | None:intergenic | 40.0% | |
| !! | TCAGCCCAAAAGTTCTGAAA+AGG | - | chr4_3:53334293-53334312 | None:intergenic | 40.0% |
| !! | CCGTAAGCTTTAACTTGATG+AGG | - | chr4_3:53334955-53334974 | None:intergenic | 40.0% |
| TAACCATAGTTTCCTCCCTT+AGG | + | chr4_3:53335253-53335272 | Msa0647330:intron | 40.0% | |
| AACCATAGTTTCCTCCCTTA+GGG | + | chr4_3:53335254-53335273 | Msa0647330:intron | 40.0% | |
| TAATGTAAACTCCCTAAGGG+AGG | - | chr4_3:53335268-53335287 | None:intergenic | 40.0% | |
| GTAATTCCAGTGAGTTGTGT+AGG | + | chr4_3:53335299-53335318 | Msa0647330:intron | 40.0% | |
| AATTCCAGTGAGTTGTGTAG+GGG | + | chr4_3:53335301-53335320 | Msa0647330:intron | 40.0% | |
| ! | TAAATGGTCGGCTTAGTAGT+AGG | + | chr4_3:53335399-53335418 | Msa0647330:intron | 40.0% |
| GCCAATGAACCTAACATTTG+AGG | + | chr4_3:53335694-53335713 | Msa0647330:CDS | 40.0% | |
| ! | CAGATCAAGGGCTTACATTT+TGG | + | chr4_3:53335718-53335737 | Msa0647330:CDS | 40.0% |
| !! | GGCTTACATTTTGGGAAGAT+TGG | + | chr4_3:53335727-53335746 | Msa0647330:CDS | 40.0% |
| ACATAGTAAAGTGGTCGACG+AGG | - | chr4_3:53331194-53331213 | None:intergenic | 45.0% | |
| GAAGAGGATGAGGATGATGA+AGG | + | chr4_3:53331428-53331447 | Msa0647330:CDS | 45.0% | |
| ! | ATGATTCTGGGAGGAATGTG+AGG | + | chr4_3:53331456-53331475 | Msa0647330:CDS | 45.0% |
| ! | CAAGCCTCGTGTCATTCTTA+AGG | + | chr4_3:53331559-53331578 | Msa0647330:CDS | 45.0% |
| !! | ACAATGTAACATCGACTCCG+TGG | - | chr4_3:53331681-53331700 | None:intergenic | 45.0% |
| GCTAGCTAGAGAGAAGAAGA+GGG | - | chr4_3:53331933-53331952 | None:intergenic | 45.0% | |
| AGCTAGCTAGAGAGAAGAAG+AGG | - | chr4_3:53331934-53331953 | None:intergenic | 45.0% | |
| ! | ACAATCTGGTAACGATGGGA+CGG | + | chr4_3:53332220-53332239 | Msa0647330:CDS | 45.0% |
| ! | TTCCAGCTCACATTAGCTTC+TGG | + | chr4_3:53332353-53332372 | Msa0647330:CDS | 45.0% |
| TAGCAGTAGGGGAAAGAGAA+AGG | - | chr4_3:53332389-53332408 | None:intergenic | 45.0% | |
| !! | AGGTGTCACTTGGGTTACAT+TGG | + | chr4_3:53332653-53332672 | Msa0647330:intron | 45.0% |
| AAACTGTTACCTTGAGGGTG+AGG | + | chr4_3:53332844-53332863 | Msa0647330:intron | 45.0% | |
| AACTGTTACCTTGAGGGTGA+GGG | + | chr4_3:53332845-53332864 | Msa0647330:intron | 45.0% | |
| ! | GAAGGGCACATGTGAATGAA+TGG | + | chr4_3:53332867-53332886 | Msa0647330:intron | 45.0% |
| GAGGGTTTGGGAATTTCCAA+CGG | + | chr4_3:53332901-53332920 | Msa0647330:intron | 45.0% | |
| ! | GTTGCCTGCTTTGAATCTGT+GGG | + | chr4_3:53332923-53332942 | Msa0647330:intron | 45.0% |
| ! | TAACTCACGCATGGGCATTT+TGG | - | chr4_3:53333071-53333090 | None:intergenic | 45.0% |
| TGGGAATGAGCAAATCCATC+TGG | + | chr4_3:53333203-53333222 | Msa0647330:intron | 45.0% | |
| GGGAATGAGCAAATCCATCT+GGG | + | chr4_3:53333204-53333223 | Msa0647330:intron | 45.0% | |
| GGGCCATATGCTAAAAAGCT+GGG | + | chr4_3:53333283-53333302 | Msa0647330:intron | 45.0% | |
| TAGGGTGATGTATAAGAGGC+AGG | - | chr4_3:53333312-53333331 | None:intergenic | 45.0% | |
| ACTTTACCGTACTTCTCACG+TGG | + | chr4_3:53333465-53333484 | Msa0647330:intron | 45.0% | |
| CTAAAAGACACCTTCATGGG+TGG | - | chr4_3:53334099-53334118 | None:intergenic | 45.0% | |
| GGATACCAAGTTCCACTCTA+CGG | + | chr4_3:53335617-53335636 | Msa0647330:CDS | 45.0% | |
| ! | ACTTTTCATGGCAACCGTCT+TGG | + | chr4_3:53335788-53335807 | Msa0647330:CDS | 45.0% |
| !!! | ATATTTTTTTATTATATTGT+TGG | + | chr4_3:53334577-53334596 | Msa0647330:intron | 5.0% |
| !!! | AAAATTTTAAAATTTTAAAC+TGG | - | chr4_3:53334697-53334716 | None:intergenic | 5.0% |
| !! | TGGTGAACGGTTTGGTGTTG+AGG | - | chr4_3:53331171-53331190 | None:intergenic | 50.0% |
| TAGTAAAGTGGTCGACGAGG+TGG | - | chr4_3:53331191-53331210 | None:intergenic | 50.0% | |
| GACTCGCGAGAGTGATGAAT+AGG | - | chr4_3:53331314-53331333 | None:intergenic | 50.0% | |
| CGAAGCAGAGTAACGAGAAG+TGG | - | chr4_3:53331339-53331358 | None:intergenic | 50.0% | |
| CTGCTTCGCTGAAAAACCCT+AGG | + | chr4_3:53331351-53331370 | Msa0647330:CDS | 50.0% | |
| CTCGGTATGTTCGGTATCAC+AGG | + | chr4_3:53331632-53331651 | Msa0647330:intron | 50.0% | |
| GTCAGAATCACGGTGATCCA+CGG | + | chr4_3:53331661-53331680 | Msa0647330:intron | 50.0% | |
| ! | CAATCTGGTAACGATGGGAC+GGG | + | chr4_3:53332221-53332240 | Msa0647330:CDS | 50.0% |
| ! | AATCTGGTAACGATGGGACG+GGG | + | chr4_3:53332222-53332241 | Msa0647330:CDS | 50.0% |
| GACCAGAAGCTAATGTGAGC+TGG | - | chr4_3:53332358-53332377 | None:intergenic | 50.0% | |
| ! | GCTCACATTAGCTTCTGGTC+AGG | + | chr4_3:53332358-53332377 | Msa0647330:CDS | 50.0% |
| CAGTAGGGGAAAGAGAAAGG+TGG | - | chr4_3:53332386-53332405 | None:intergenic | 50.0% | |
| TTACCTTGAGGGTGAGGGAA+GGG | + | chr4_3:53332850-53332869 | Msa0647330:intron | 50.0% | |
| GATTCAAAGCAGGCAACCGT+TGG | - | chr4_3:53332920-53332939 | None:intergenic | 50.0% | |
| ! | GGTTGCCTGCTTTGAATCTG+TGG | + | chr4_3:53332922-53332941 | Msa0647330:intron | 50.0% |
| ! | CCTGCTTTGAATCTGTGGGT+GGG | + | chr4_3:53332927-53332946 | Msa0647330:intron | 50.0% |
| ! | CTGCTTTGAATCTGTGGGTG+GGG | + | chr4_3:53332928-53332947 | Msa0647330:intron | 50.0% |
| GCGTGAGTTAACTCACGCAT+GGG | - | chr4_3:53333079-53333098 | None:intergenic | 50.0% | |
| AGCGTGAGTTAACTCACGCA+TGG | - | chr4_3:53333161-53333180 | None:intergenic | 50.0% | |
| GGGGCCATATGCTAAAAAGC+TGG | + | chr4_3:53333282-53333301 | Msa0647330:intron | 50.0% | |
| ACATCACCCTACTTATGGGC+AGG | + | chr4_3:53333321-53333340 | Msa0647330:intron | 50.0% | |
| CATCACCCTACTTATGGGCA+GGG | + | chr4_3:53333322-53333341 | Msa0647330:intron | 50.0% | |
| ATCACCCTACTTATGGGCAG+GGG | + | chr4_3:53333323-53333342 | Msa0647330:intron | 50.0% | |
| GGGACCCCAACAAGTTCAAT+AGG | + | chr4_3:53333344-53333363 | Msa0647330:intron | 50.0% | |
| CTGAAGCCACGTGAGAAGTA+CGG | - | chr4_3:53333474-53333493 | None:intergenic | 50.0% | |
| TACTTCTCACGTGGCTTCAG+AGG | + | chr4_3:53333474-53333493 | Msa0647330:intron | 50.0% | |
| TTGCTAGAAGCCACCCATGA+AGG | + | chr4_3:53334086-53334105 | Msa0647330:intron | 50.0% | |
| GGAAATCACACCTTGAGGTG+TGG | - | chr4_3:53334126-53334145 | None:intergenic | 50.0% | |
| CTCCCTAAGGGAGGAAACTA+TGG | - | chr4_3:53335259-53335278 | None:intergenic | 50.0% | |
| ATCAGTCAAGGAAGAGCCAG+AGG | + | chr4_3:53335573-53335592 | Msa0647330:CDS | 50.0% | |
| ! | AAGTTAGCTGTGGTGGTGCA+TGG | + | chr4_3:53335596-53335615 | Msa0647330:CDS | 50.0% |
| TACCAAGTTCCACTCTACGG+TGG | + | chr4_3:53335620-53335639 | Msa0647330:CDS | 50.0% | |
| ACCAAGTTCCACTCTACGGT+GGG | + | chr4_3:53335621-53335640 | Msa0647330:CDS | 50.0% | |
| TGGTGAGGTGGTGAACCTAC+AGG | - | chr4_3:53331266-53331285 | None:intergenic | 55.0% | |
| ! | ATCTGGTAACGATGGGACGG+GGG | + | chr4_3:53332223-53332242 | Msa0647330:CDS | 55.0% |
| GTTACCTTGAGGGTGAGGGA+AGG | + | chr4_3:53332849-53332868 | Msa0647330:intron | 55.0% | |
| ! | GCCTGCTTTGAATCTGTGGG+TGG | + | chr4_3:53332926-53332945 | Msa0647330:intron | 55.0% |
| CCCACCCACAGATTCAAAGC+AGG | - | chr4_3:53332930-53332949 | None:intergenic | 55.0% | |
| TCACCCTACTTATGGGCAGG+GGG | + | chr4_3:53333324-53333343 | Msa0647330:intron | 55.0% | |
| CCAACCCCTACACAACTCAC+TGG | - | chr4_3:53335308-53335327 | None:intergenic | 55.0% | |
| CCAGTGAGTTGTGTAGGGGT+TGG | + | chr4_3:53335305-53335324 | Msa0647330:intron | 55.0% | |
| GAGCCAGAGGAAGTTAGCTG+TGG | + | chr4_3:53335586-53335605 | Msa0647330:CDS | 55.0% | |
| CCACCACAGCTAACTTCCTC+TGG | - | chr4_3:53335592-53335611 | None:intergenic | 55.0% | |
| CCAGAGGAAGTTAGCTGTGG+TGG | + | chr4_3:53335589-53335608 | Msa0647330:CDS | 55.0% | |
| CCAAGTTCCACTCTACGGTG+GGG | + | chr4_3:53335622-53335641 | Msa0647330:CDS | 55.0% | |
| CGACGAGGTGGTGAACGGTT+TGG | - | chr4_3:53331179-53331198 | None:intergenic | 60.0% | |
| GTGGTCGACGAGGTGGTGAA+CGG | - | chr4_3:53331184-53331203 | None:intergenic | 60.0% | |
| GGTCCCCCTGCCCATAAGTA+GGG | - | chr4_3:53333330-53333349 | None:intergenic | 60.0% | |
| CCCCACCGTAGAGTGGAACT+TGG | - | chr4_3:53335625-53335644 | None:intergenic | 60.0% | |
| TCCACTCTACGGTGGGGTGT+CGG | + | chr4_3:53335628-53335647 | Msa0647330:CDS | 60.0% | |
| !! | TACGGTGGGGTGTCGGTTCT+TGG | + | chr4_3:53335635-53335654 | Msa0647330:CDS | 60.0% |
| GTGCCCTTCCCTCACCCTCA+AGG | - | chr4_3:53332856-53332875 | None:intergenic | 65.0% | |
| GGGTCCCCCTGCCCATAAGT+AGG | - | chr4_3:53333331-53333350 | None:intergenic | 65.0% | |
| ACCGACACCCCACCGTAGAG+TGG | - | chr4_3:53335632-53335651 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 53331055 | 53335934 | 53331055 | ID=Msa0647330;Name=Msa0647330 |
| chr4_3 | mRNA | 53331055 | 53335934 | 53331055 | ID=Msa0647330-mRNA-1;Parent=Msa0647330;Name=Msa0647330-mRNA-1;_AED=0.04;_eAED=0.04;_QI=46|1|1|1|1|1|3|84|318 |
| chr4_3 | exon | 53331055 | 53331580 | 53331055 | ID=Msa0647330-mRNA-1:exon:13303;Parent=Msa0647330-mRNA-1 |
| chr4_3 | exon | 53332194 | 53332379 | 53332194 | ID=Msa0647330-mRNA-1:exon:13304;Parent=Msa0647330-mRNA-1 |
| chr4_3 | exon | 53335560 | 53335934 | 53335560 | ID=Msa0647330-mRNA-1:exon:13305;Parent=Msa0647330-mRNA-1 |
| chr4_3 | five_prime_UTR | 53331055 | 53331100 | 53331055 | ID=Msa0647330-mRNA-1:five_prime_utr;Parent=Msa0647330-mRNA-1 |
| chr4_3 | CDS | 53331101 | 53331580 | 53331101 | ID=Msa0647330-mRNA-1:cds;Parent=Msa0647330-mRNA-1 |
| chr4_3 | CDS | 53332194 | 53332379 | 53332194 | ID=Msa0647330-mRNA-1:cds;Parent=Msa0647330-mRNA-1 |
| chr4_3 | CDS | 53335560 | 53335850 | 53335560 | ID=Msa0647330-mRNA-1:cds;Parent=Msa0647330-mRNA-1 |
| chr4_3 | three_prime_UTR | 53335851 | 53335934 | 53335851 | ID=Msa0647330-mRNA-1:three_prime_utr;Parent=Msa0647330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
