Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0690200 | XP_013456582.1 | 97.799 | 318 | 7 | 0 | 1 | 318 | 1 | 318 | 0.0 | 647 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0690200 | A0A072UNH6 | 97.799 | 318 | 7 | 0 | 1 | 318 | 1 | 318 | 0.0 | 647 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0607130 | Msa0690200 | 0.900278 | 8.593490e-78 | -8.615850e-47 |
| Msa0647330 | Msa0690200 | 0.987936 | 4.317172e-172 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0690200 | MtrunA17_Chr4g0038691 | 97.799 | 318 | 7 | 0 | 1 | 318 | 1 | 318 | 0.0 | 647 |
| Msa0690200 | MtrunA17_Chr6g0483441 | 46.395 | 319 | 138 | 10 | 6 | 317 | 1 | 293 | 5.29e-76 | 234 |
| Msa0690200 | MtrunA17_Chr4g0053001 | 44.817 | 328 | 161 | 9 | 4 | 318 | 10 | 330 | 4.59e-71 | 223 |
| Msa0690200 | MtrunA17_Chr8g0392551 | 45.426 | 317 | 146 | 10 | 6 | 317 | 1 | 295 | 1.05e-64 | 206 |
| Msa0690200 | MtrunA17_Chr2g0331671 | 38.710 | 310 | 159 | 10 | 24 | 318 | 16 | 309 | 3.54e-56 | 184 |
| Msa0690200 | MtrunA17_Chr6g0486001 | 35.463 | 313 | 175 | 10 | 6 | 307 | 1 | 297 | 8.57e-51 | 170 |
| Msa0690200 | MtrunA17_Chr8g0379281 | 46.222 | 225 | 82 | 7 | 1 | 224 | 1 | 187 | 5.51e-40 | 139 |
| Msa0690200 | MtrunA17_Chr8g0379271 | 61.458 | 96 | 35 | 1 | 223 | 318 | 1 | 94 | 1.11e-33 | 119 |
| Msa0690200 | MtrunA17_Chr3g0091821 | 35.849 | 159 | 90 | 3 | 160 | 315 | 41 | 190 | 5.72e-25 | 99.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0690200 | AT2G41990.1 | 53.035 | 313 | 128 | 6 | 6 | 316 | 1 | 296 | 8.93e-95 | 283 |
| Msa0690200 | AT4G35170.1 | 54.362 | 298 | 122 | 7 | 26 | 315 | 5 | 296 | 8.05e-94 | 281 |
| Msa0690200 | AT1G45688.1 | 42.363 | 347 | 153 | 11 | 6 | 315 | 1 | 337 | 6.67e-71 | 223 |
| Msa0690200 | AT5G42860.1 | 43.235 | 340 | 138 | 12 | 6 | 315 | 1 | 315 | 2.58e-70 | 221 |
| Msa0690200 | AT1G45688.2 | 44.758 | 248 | 105 | 11 | 6 | 231 | 1 | 238 | 3.51e-48 | 162 |
| Msa0690200 | AT3G24605.1 | 31.908 | 304 | 169 | 9 | 4 | 296 | 1 | 277 | 1.48e-37 | 135 |
| Msa0690200 | AT3G24600.1 | 37.438 | 203 | 119 | 2 | 114 | 312 | 99 | 297 | 2.47e-36 | 133 |
Find 65 sgRNAs with CRISPR-Local
Find 321 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGATCAAGGGCTTACATTT+TGG | 0.150164 | 4_4:+57727580 | Msa0690200:CDS |
| ACCCTAGGATTTCTTCTTCT+TGG | 0.203956 | 4_4:+57722730 | Msa0690200:CDS |
| GATGAAGGTGTTTATGATTC+TGG | 0.209226 | 4_4:+57722807 | Msa0690200:CDS |
| TAAATTTATTGATGTTCTTT+TGG | 0.218622 | 4_4:+57727710 | Msa0690200:exon |
| AGAAATCCTGCAACTTTCTT+TGG | 0.253597 | 4_4:+57723654 | Msa0690200:CDS |
| CTTGGAAGAAGCTGAATAAT+AGG | 0.299657 | 4_4:+57722748 | Msa0690200:CDS |
| AAAGATAGTAGTGAAAATTT+TGG | 0.301057 | 4_4:-57722647 | None:intergenic |
| TACGGTGGGGTGTCGGTTCT+TGG | 0.311163 | 4_4:+57727497 | Msa0690200:CDS |
| ACCTCAAATGTTAGGTTCAT+TGG | 0.313920 | 4_4:-57727557 | None:intergenic |
| TTAAGTCTACTTTCTATCAT+AGG | 0.334030 | 4_4:+57727612 | Msa0690200:CDS |
| TTGATCTGACCTCAAATGTT+AGG | 0.348971 | 4_4:-57727565 | None:intergenic |
| TTCCAGCTCACATTAGCTTC+TGG | 0.372922 | 4_4:+57723714 | Msa0690200:CDS |
| ATGAAGGTGTTTATGATTCT+GGG | 0.416622 | 4_4:+57722808 | Msa0690200:CDS |
| CAAGCCTCGTGTCATTCTTA+AGG | 0.433666 | 4_4:+57722923 | Msa0690200:CDS |
| GCCAATGAACCTAACATTTG+AGG | 0.444860 | 4_4:+57727556 | Msa0690200:CDS |
| TGAACACCAAAGAAAGTTGC+AGG | 0.445969 | 4_4:-57723660 | None:intergenic |
| TGTCATTGAACTCAACGGTT+AGG | 0.446675 | 4_4:+57723622 | Msa0690200:CDS |
| TTCCAAGAAGAAGAAATCCT+AGG | 0.459677 | 4_4:-57722732 | None:intergenic |
| TCTTATGGTTCTTCTCCTGT+AGG | 0.462684 | 4_4:+57722612 | Msa0690200:CDS |
| TGGTGAACGGTTTGGTGTTG+AGG | 0.475030 | 4_4:-57722532 | None:intergenic |
| GACTCGCGAGAGTGATGAAT+AGG | 0.478886 | 4_4:-57722675 | None:intergenic |
| CGAAGCAGAGTAACGAGAAG+TGG | 0.487540 | 4_4:-57722700 | None:intergenic |
| CCACCACAGCTAACTTCCTC+TGG | 0.510776 | 4_4:-57727451 | None:intergenic |
| TGGTGAGGTGGTGAACCTAC+AGG | 0.511052 | 4_4:-57722627 | None:intergenic |
| TCCAAGAAGAAGAAATCCTA+GGG | 0.519055 | 4_4:-57722731 | None:intergenic |
| GAGAACTTGAATGTACAATC+TGG | 0.519325 | 4_4:+57723567 | Msa0690200:CDS |
| GACCAGAAGCTAATGTGAGC+TGG | 0.519368 | 4_4:-57723716 | None:intergenic |
| CCAGAGGAAGTTAGCTGTGG+TGG | 0.524543 | 4_4:+57727451 | Msa0690200:CDS |
| TAACATTTGAGGTCAGATCA+AGG | 0.525368 | 4_4:+57727567 | Msa0690200:CDS |
| CAATCTGGTAACGATGGGAC+GGG | 0.529711 | 4_4:+57723582 | Msa0690200:CDS |
| AATCTGGTAACGATGGGACG+GGG | 0.529769 | 4_4:+57723583 | Msa0690200:CDS |
| CGACGAGGTGGTGAACGGTT+TGG | 0.536473 | 4_4:-57722540 | None:intergenic |
| TGGAAATAGCTAAGTTGCAT+AGG | 0.545685 | 4_4:-57723696 | None:intergenic |
| CCCCACCGTAGAGTGGAACT+TGG | 0.548890 | 4_4:-57727484 | None:intergenic |
| GCTCACATTAGCTTCTGGTC+AGG | 0.549576 | 4_4:+57723719 | Msa0690200:CDS |
| ATGATTCTGGGAGGAATGTG+AGG | 0.550183 | 4_4:+57722820 | Msa0690200:CDS |
| TGATCTTGATGAAGAGGATG+AGG | 0.555043 | 4_4:+57722782 | Msa0690200:CDS |
| TCCACTCTACGGTGGGGTGT+CGG | 0.555370 | 4_4:+57727490 | Msa0690200:CDS |
| ACCAAGTTCCACTCTACGGT+GGG | 0.556211 | 4_4:+57727483 | Msa0690200:CDS |
| TTCAATGACAACATATCTGT+TGG | 0.560744 | 4_4:-57723609 | None:intergenic |
| TACAAGAGTTCTATCAGTCA+AGG | 0.565497 | 4_4:+57727423 | Msa0690200:CDS |
| AAGTTAGCTGTGGTGGTGCA+TGG | 0.569699 | 4_4:+57727458 | Msa0690200:CDS |
| GTGGTCGACGAGGTGGTGAA+CGG | 0.571771 | 4_4:-57722545 | None:intergenic |
| AACATTTGAGGTCAGATCAA+GGG | 0.576833 | 4_4:+57727568 | Msa0690200:CDS |
| GGACTTTGAACATAGTAAAG+TGG | 0.576967 | 4_4:-57722564 | None:intergenic |
| ACCGACACCCCACCGTAGAG+TGG | 0.581120 | 4_4:-57727491 | None:intergenic |
| GGATACCAAGTTCCACTCTA+CGG | 0.586208 | 4_4:+57727479 | Msa0690200:CDS |
| AAGCTGAATAATAGGAATGG+TGG | 0.590755 | 4_4:+57722756 | Msa0690200:CDS |
| AATGTACAATCTGGTAACGA+TGG | 0.591331 | 4_4:+57723576 | Msa0690200:CDS |
| TGGTGATGATCTTGATGAAG+AGG | 0.591542 | 4_4:+57722776 | Msa0690200:CDS |
| ATCAGTCAAGGAAGAGCCAG+AGG | 0.595434 | 4_4:+57727435 | Msa0690200:CDS |
| ACAATCTGGTAACGATGGGA+CGG | 0.603147 | 4_4:+57723581 | Msa0690200:CDS |
| ATGTACAATCTGGTAACGAT+GGG | 0.608310 | 4_4:+57723577 | Msa0690200:CDS |
| AAGAAGCTGAATAATAGGAA+TGG | 0.611476 | 4_4:+57722753 | Msa0690200:CDS |
| ATCTGGTAACGATGGGACGG+GGG | 0.626619 | 4_4:+57723584 | Msa0690200:CDS |
| TATGTTGTCATTGAACTCAA+CGG | 0.628115 | 4_4:+57723617 | Msa0690200:CDS |
| AGAAGAAACAACAAACAGCA+TGG | 0.633145 | 4_4:+57722500 | Msa0690200:CDS |
| GAAGAGGATGAGGATGATGA+AGG | 0.642247 | 4_4:+57722792 | Msa0690200:CDS |
| GAGCCAGAGGAAGTTAGCTG+TGG | 0.644458 | 4_4:+57727448 | Msa0690200:CDS |
| TAGTAAAGTGGTCGACGAGG+TGG | 0.650497 | 4_4:-57722552 | None:intergenic |
| TACCAAGTTCCACTCTACGG+TGG | 0.659688 | 4_4:+57727482 | Msa0690200:CDS |
| ACATAGTAAAGTGGTCGACG+AGG | 0.674681 | 4_4:-57722555 | None:intergenic |
| CCAAGTTCCACTCTACGGTG+GGG | 0.681684 | 4_4:+57727484 | Msa0690200:CDS |
| AAGGTGTTTATGATTCTGGG+AGG | 0.699466 | 4_4:+57722811 | Msa0690200:CDS |
| GTTACCTTAAGAATGACACG+AGG | 0.801590 | 4_4:-57722927 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAAATAAAATAAATAA+TGG | + | chr4_4:57723515-57723534 | Msa0690200:intron | 0.0% |
| !!! | TAAAAAATTTTAAATTTTTT+CGG | + | chr4_4:57726326-57726345 | Msa0690200:intron | 0.0% |
| !! | ATTAAATATTTCACATAAAT+TGG | - | chr4_4:57723426-57723445 | None:intergenic | 10.0% |
| !! | AATATTTAATTAAATGTTGT+AGG | + | chr4_4:57723436-57723455 | Msa0690200:intron | 10.0% |
| !! | ATATTTAATTAAATGTTGTA+GGG | + | chr4_4:57723437-57723456 | Msa0690200:intron | 10.0% |
| !!! | GATAATTTTGATTATTTAAA+AGG | + | chr4_4:57723822-57723841 | Msa0690200:intron | 10.0% |
| !! | TAGTTCTTTATATATATATA+TGG | - | chr4_4:57725625-57725644 | None:intergenic | 10.0% |
| !!! | ATATTTTTTTGTTATATTGT+TGG | + | chr4_4:57725932-57725951 | Msa0690200:intron | 10.0% |
| !! | AAACTTTCATAAAAAAAAAA+AGG | + | chr4_4:57726025-57726044 | Msa0690200:intron | 10.0% |
| !! | AACTTTCATAAAAAAAAAAA+GGG | + | chr4_4:57726026-57726045 | Msa0690200:intron | 10.0% |
| !! | CTAAAATTAACTTAAAAATA+GGG | - | chr4_4:57726160-57726179 | None:intergenic | 10.0% |
| !! | ACTAAAATTAACTTAAAAAT+AGG | - | chr4_4:57726161-57726180 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTGTTCATT+TGG | + | chr4_4:57726857-57726876 | Msa0690200:intron | 10.0% |
| !!! | TTTTAATTTAGTTTCTATGA+TGG | + | chr4_4:57723085-57723104 | Msa0690200:intron | 15.0% |
| !! | AAATAATTACTCATAAATTG+AGG | + | chr4_4:57723358-57723377 | Msa0690200:intron | 15.0% |
| !! | AAATAATGGTTGAATAAATA+TGG | + | chr4_4:57723529-57723548 | Msa0690200:intron | 15.0% |
| !!! | TTTGTTTTTGCATTAAAAAA+TGG | + | chr4_4:57724775-57724794 | Msa0690200:intron | 15.0% |
| !!! | TACACTTTTTTAAATGATAA+AGG | - | chr4_4:57725799-57725818 | None:intergenic | 15.0% |
| !! | TATAGAAAAAAGTTGTTTAA+GGG | - | chr4_4:57725872-57725891 | None:intergenic | 15.0% |
| !! | TTATAGAAAAAAGTTGTTTA+AGG | - | chr4_4:57725873-57725892 | None:intergenic | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+GGG | - | chr4_4:57726129-57726148 | None:intergenic | 15.0% |
| !! | GAAAAGTTTGTATATTTATA+GGG | + | chr4_4:57726503-57726522 | Msa0690200:intron | 15.0% |
| !!! | TTAAACTGGTTTTTTTTTTT+GGG | - | chr4_4:57726546-57726565 | None:intergenic | 15.0% |
| !!! | TTTAAACTGGTTTTTTTTTT+TGG | - | chr4_4:57726547-57726566 | None:intergenic | 15.0% |
| !!! | ACATTGATAATTTTTTACAT+TGG | - | chr4_4:57726968-57726987 | None:intergenic | 15.0% |
| !!! | TAAATTTATTGATGTTCTTT+TGG | + | chr4_4:57727710-57727729 | Msa0690200:exon | 15.0% |
| !!! | AAATTTATTGATGTTCTTTT+GGG | + | chr4_4:57727711-57727730 | Msa0690200:exon | 15.0% |
| !! | AAAAAGAGAAGAAGAAAAAT+GGG | + | chr4_4:57722447-57722466 | Msa0690200:exon | 20.0% |
| !!! | AAAGATAGTAGTGAAAATTT+TGG | - | chr4_4:57722650-57722669 | None:intergenic | 20.0% |
| !! | ATATATATAAATGCAGAAAG+TGG | - | chr4_4:57723326-57723345 | None:intergenic | 20.0% |
| !! | AAACAAATATTAGAAGAATG+AGG | - | chr4_4:57723485-57723504 | None:intergenic | 20.0% |
| !!! | GTAGAGTTTTTAGAAAATTA+CGG | - | chr4_4:57723916-57723935 | None:intergenic | 20.0% |
| !!! | ATGAATGGAATTTTTTTATG+AGG | + | chr4_4:57724243-57724262 | Msa0690200:intron | 20.0% |
| !!! | TGAATGGAATTTTTTTATGA+GGG | + | chr4_4:57724244-57724263 | Msa0690200:intron | 20.0% |
| !!! | ACATTTTAGTCATTTACTTT+GGG | + | chr4_4:57724587-57724606 | Msa0690200:intron | 20.0% |
| !! | CAATTAAATTGAACTTTGTT+CGG | - | chr4_4:57724654-57724673 | None:intergenic | 20.0% |
| !! | AATTTAATTGGTACACTTTA+TGG | + | chr4_4:57724664-57724683 | Msa0690200:intron | 20.0% |
| !! | ATTTAATTGGTACACTTTAT+GGG | + | chr4_4:57724665-57724684 | Msa0690200:intron | 20.0% |
| !!! | TGCATTACATTTTGAATTAT+TGG | + | chr4_4:57724906-57724925 | Msa0690200:intron | 20.0% |
| !!! | ATTACGTTTTTTAGATAAAC+AGG | + | chr4_4:57724933-57724952 | Msa0690200:intron | 20.0% |
| !!! | TTACGTTTTTTAGATAAACA+GGG | + | chr4_4:57724934-57724953 | Msa0690200:intron | 20.0% |
| !!! | TCTTTTTTCTCTTTTTTCAT+TGG | + | chr4_4:57725039-57725058 | Msa0690200:intron | 20.0% |
| !!! | AAAAGAATTGTTTTTATGAC+TGG | + | chr4_4:57725311-57725330 | Msa0690200:intron | 20.0% |
| !! | ACATCTTCATAAAAATTAGT+TGG | + | chr4_4:57725529-57725548 | Msa0690200:intron | 20.0% |
| !!! | GTTTTTTGTATTGAAAATTG+AGG | - | chr4_4:57725692-57725711 | None:intergenic | 20.0% |
| !! | TCTATAATAAAGATTGTTGT+TGG | + | chr4_4:57725886-57725905 | Msa0690200:intron | 20.0% |
| !!! | TTGTTGGTGTTATTTTAAAT+TGG | + | chr4_4:57725948-57725967 | Msa0690200:intron | 20.0% |
| !!! | AAAAGGGTTAAATATGTTTT+TGG | + | chr4_4:57726042-57726061 | Msa0690200:intron | 20.0% |
| !!! | GAAAAGTTGGTATATTTATA+GGG | - | chr4_4:57726069-57726088 | None:intergenic | 20.0% |
| !!! | GTAGTGATTGAAAATTTTAT+AGG | - | chr4_4:57726130-57726149 | None:intergenic | 20.0% |
| !!! | AAATTTTCAATCACTACTTT+TGG | + | chr4_4:57726133-57726152 | Msa0690200:intron | 20.0% |
| !! | CGAAAAGTTTGTATATTTAT+AGG | + | chr4_4:57726502-57726521 | Msa0690200:intron | 20.0% |
| !!! | TTTTCGCTAGTTAATAATAA+TGG | + | chr4_4:57726607-57726626 | Msa0690200:intron | 20.0% |
| !!! | TTTTTTCATGTATAGTTATG+TGG | - | chr4_4:57726790-57726809 | None:intergenic | 20.0% |
| !! | TATTCAAGAAATAAAACTCT+AGG | + | chr4_4:57727036-57727055 | Msa0690200:intron | 20.0% |
| !! | AACTCTATACTTAAATTAAG+TGG | + | chr4_4:57727079-57727098 | Msa0690200:intron | 20.0% |
| !! | ACTCTATACTTAAATTAAGT+GGG | + | chr4_4:57727080-57727099 | Msa0690200:intron | 20.0% |
| ! | CAAAAAGAGAAGAAGAAAAA+TGG | + | chr4_4:57722446-57722465 | Msa0690200:exon | 25.0% |
| !!! | AAGACATTTTTTCAACATCA+TGG | - | chr4_4:57722596-57722615 | None:intergenic | 25.0% |
| ! | GATGTTGAAAAAATGTCTTA+TGG | + | chr4_4:57722597-57722616 | Msa0690200:CDS | 25.0% |
| ! | AAAAAAACAATCCTAGACTT+TGG | + | chr4_4:57723383-57723402 | Msa0690200:intron | 25.0% |
| ! | TTGCAATAAATTTAGCAGTA+GGG | - | chr4_4:57723762-57723781 | None:intergenic | 25.0% |
| ! | TTTGCAATAAATTTAGCAGT+AGG | - | chr4_4:57723763-57723782 | None:intergenic | 25.0% |
| !! | AGTTTTCAAAATCATCGAAA+TGG | + | chr4_4:57723941-57723960 | Msa0690200:intron | 25.0% |
| !!! | GAATTTTTTTATGAGGGTTT+GGG | + | chr4_4:57724250-57724269 | Msa0690200:intron | 25.0% |
| !!! | GACATTTTAGTCATTTACTT+TGG | + | chr4_4:57724586-57724605 | Msa0690200:intron | 25.0% |
| ! | CGAACAAAGTTCAATTTAAT+TGG | + | chr4_4:57724652-57724671 | Msa0690200:intron | 25.0% |
| ! | TTTAATTGGTACACTTTATG+GGG | + | chr4_4:57724666-57724685 | Msa0690200:intron | 25.0% |
| !!! | TACGTTTTTTAGATAAACAG+GGG | + | chr4_4:57724935-57724954 | Msa0690200:intron | 25.0% |
| !! | TTTTTCATTGGCAAAAACAA+TGG | + | chr4_4:57725051-57725070 | Msa0690200:intron | 25.0% |
| !!! | TTGGGTTTTACTTTTTTTTG+TGG | + | chr4_4:57725212-57725231 | Msa0690200:intron | 25.0% |
| !!! | TTTTATGACTGGTGTTTTTT+TGG | + | chr4_4:57725322-57725341 | Msa0690200:intron | 25.0% |
| !!! | GTGTTTTTTTGGTATTTAGA+TGG | + | chr4_4:57725333-57725352 | Msa0690200:intron | 25.0% |
| ! | ACAAAAAGAAAGAATAGTAC+TGG | + | chr4_4:57725441-57725460 | Msa0690200:intron | 25.0% |
| ! | GCAAAGTTATAACTAAAAAG+TGG | - | chr4_4:57725503-57725522 | None:intergenic | 25.0% |
| !! | AGTTGTTTAAGGGTATAATT+GGG | - | chr4_4:57725862-57725881 | None:intergenic | 25.0% |
| !! | AAGTTGTTTAAGGGTATAAT+TGG | - | chr4_4:57725863-57725882 | None:intergenic | 25.0% |
| !!! | CGAAAAGTTGGTATATTTAT+AGG | - | chr4_4:57726070-57726089 | None:intergenic | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | - | chr4_4:57726472-57726491 | None:intergenic | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | - | chr4_4:57726471-57726490 | None:intergenic | 25.0% |
| !! | AAATTTTCCATCTTCACTTT+TGG | - | chr4_4:57726439-57726458 | None:intergenic | 25.0% |
| !! | AAGTGAAGATGGAAAATTTT+TGG | + | chr4_4:57726440-57726459 | Msa0690200:intron | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | + | chr4_4:57726471-57726490 | Msa0690200:intron | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | + | chr4_4:57726472-57726491 | Msa0690200:intron | 25.0% |
| ! | ATTATTAACTAGCGAAAAGA+CGG | - | chr4_4:57726605-57726624 | None:intergenic | 25.0% |
| ! | CATAGGTTAAGACAAAATTA+AGG | - | chr4_4:57726657-57726676 | None:intergenic | 25.0% |
| !! | ATTTTGTCTTAACCTATGTT+TGG | + | chr4_4:57726659-57726678 | Msa0690200:intron | 25.0% |
| ! | TTAAATGTAGAACCAAACAT+AGG | - | chr4_4:57726674-57726693 | None:intergenic | 25.0% |
| ! | TTGTTCATTTGGTTAATTAG+AGG | + | chr4_4:57726868-57726887 | Msa0690200:intron | 25.0% |
| !! | TCTAGGAAAAAGTTTTTCTT+TGG | + | chr4_4:57727053-57727072 | Msa0690200:intron | 25.0% |
| ! | CTCTATACTTAAATTAAGTG+GGG | + | chr4_4:57727081-57727100 | Msa0690200:intron | 25.0% |
| ! | ATACTCATATTCATATGAGT+TGG | - | chr4_4:57727198-57727217 | None:intergenic | 25.0% |
| ! | TTAAGTCTACTTTCTATCAT+AGG | + | chr4_4:57727612-57727631 | Msa0690200:CDS | 25.0% |
| !! | AATTAAGATGTTTTCCAAGA+CGG | - | chr4_4:57727667-57727686 | None:intergenic | 25.0% |
| ! | TTTTCAACATCATGGTTTGA+AGG | - | chr4_4:57722588-57722607 | None:intergenic | 30.0% |
| !! | TAGTAGTGAAAATTTTGGTG+AGG | - | chr4_4:57722645-57722664 | None:intergenic | 30.0% |
| AAGAAGCTGAATAATAGGAA+TGG | + | chr4_4:57722753-57722772 | Msa0690200:CDS | 30.0% | |
| !! | ATGAAGGTGTTTATGATTCT+GGG | + | chr4_4:57722808-57722827 | Msa0690200:CDS | 30.0% |
| !!! | TGTGTTTTCGTTGATTCTTT+GGG | + | chr4_4:57722884-57722903 | Msa0690200:CDS | 30.0% |
| TTCAATGACAACATATCTGT+TGG | - | chr4_4:57723612-57723631 | None:intergenic | 30.0% | |
| TATGTTGTCATTGAACTCAA+CGG | + | chr4_4:57723617-57723636 | Msa0690200:CDS | 30.0% | |
| TGCAATAAATTTAGCAGTAG+GGG | - | chr4_4:57723761-57723780 | None:intergenic | 30.0% | |
| CGTGATAGGTATATAAGAAT+TGG | - | chr4_4:57723971-57723990 | None:intergenic | 30.0% | |
| TTAAACCTACATGGAAAAAG+AGG | + | chr4_4:57723994-57724013 | Msa0690200:intron | 30.0% | |
| CGATTAACATCACATGATAT+TGG | - | chr4_4:57724044-57724063 | None:intergenic | 30.0% | |
| GAAAATTACTTGTGACATTC+TGG | - | chr4_4:57724068-57724087 | None:intergenic | 30.0% | |
| ATGTGACATTGGTATGATAT+CGG | - | chr4_4:57724145-57724164 | None:intergenic | 30.0% | |
| ! | TCAAGGTAACAGTTTTTCTA+GGG | - | chr4_4:57724200-57724219 | None:intergenic | 30.0% |
| TAGAAAAACTGTTACCTTGA+GGG | + | chr4_4:57724200-57724219 | Msa0690200:intron | 30.0% | |
| !!! | GGAATTTTTTTATGAGGGTT+TGG | + | chr4_4:57724249-57724268 | Msa0690200:intron | 30.0% |
| CAAAATTGCGTATCAATTTG+AGG | + | chr4_4:57724313-57724332 | Msa0690200:intron | 30.0% | |
| ! | AATTTTGCTCTTTACCCAAA+TGG | - | chr4_4:57724624-57724643 | None:intergenic | 30.0% |
| TTATACATCACCCTACTTAT+GGG | + | chr4_4:57724720-57724739 | Msa0690200:intron | 30.0% | |
| ! | TCTTACCTATTGAACTTGTT+GGG | - | chr4_4:57724755-57724774 | None:intergenic | 30.0% |
| ATCTTACCTATTGAACTTGT+TGG | - | chr4_4:57724756-57724775 | None:intergenic | 30.0% | |
| !!! | CTGTATTTTTTGTCTACAAG+AGG | + | chr4_4:57724962-57724981 | Msa0690200:intron | 30.0% |
| GTCAAAAAGTTGTCATAAAG+TGG | + | chr4_4:57725131-57725150 | Msa0690200:intron | 30.0% | |
| TTGTACAAATACCATTTCTC+AGG | + | chr4_4:57725154-57725173 | Msa0690200:intron | 30.0% | |
| ! | TTGGGAAAGATTTTAAACGT+TGG | + | chr4_4:57725193-57725212 | Msa0690200:intron | 30.0% |
| ! | TGGGAAAGATTTTAAACGTT+GGG | + | chr4_4:57725194-57725213 | Msa0690200:intron | 30.0% |
| !!! | TTTTTTTTGTGGTGAAACGT+TGG | + | chr4_4:57725223-57725242 | Msa0690200:intron | 30.0% |
| ! | CTAGAAGACACATTTTATGA+AGG | - | chr4_4:57725597-57725616 | None:intergenic | 30.0% |
| ! | ACTATCCTTTTCAGAACTTT+TGG | + | chr4_4:57725641-57725660 | Msa0690200:intron | 30.0% |
| ! | CTATCCTTTTCAGAACTTTT+GGG | + | chr4_4:57725642-57725661 | Msa0690200:intron | 30.0% |
| TTATAGGGACTAAAAGTTGA+AGG | - | chr4_4:57726114-57726133 | None:intergenic | 30.0% | |
| !! | TGAAGATGGAAAATTTTTGG+AGG | + | chr4_4:57726443-57726462 | Msa0690200:intron | 30.0% |
| TTATTAACTAGCGAAAAGAC+GGG | - | chr4_4:57726604-57726623 | None:intergenic | 30.0% | |
| ! | TTAACATGTTAAGTTGCTCT+TGG | + | chr4_4:57726690-57726709 | Msa0690200:intron | 30.0% |
| ! | TAACATGTTAAGTTGCTCTT+GGG | + | chr4_4:57726691-57726710 | Msa0690200:intron | 30.0% |
| !! | GACTTATTTTCTCATACAAG+TGG | - | chr4_4:57726920-57726939 | None:intergenic | 30.0% |
| TTAAATTAAGTGGGGATAAC+TGG | + | chr4_4:57727089-57727108 | Msa0690200:intron | 30.0% | |
| TTGTAATGTAAACTCCCTAA+GGG | - | chr4_4:57727133-57727152 | None:intergenic | 30.0% | |
| TGAATGCATCAATACGTAAA+TGG | + | chr4_4:57727245-57727264 | Msa0690200:intron | 30.0% | |
| !! | AGATGTTCAATCACTTTTCA+TGG | + | chr4_4:57727638-57727657 | Msa0690200:CDS | 30.0% |
| ! | TTTATTGATGTTCTTTTGGG+TGG | + | chr4_4:57727714-57727733 | Msa0690200:three_prime_UTR | 30.0% |
| AAGAGAAGAAGAAAAATGGG+AGG | + | chr4_4:57722450-57722469 | Msa0690200:exon | 35.0% | |
| AGAAGAAACAACAAACAGCA+TGG | + | chr4_4:57722500-57722519 | Msa0690200:CDS | 35.0% | |
| GGACTTTGAACATAGTAAAG+TGG | - | chr4_4:57722567-57722586 | None:intergenic | 35.0% | |
| !! | TAGTGAAAATTTTGGTGAGG+TGG | - | chr4_4:57722642-57722661 | None:intergenic | 35.0% |
| TCCAAGAAGAAGAAATCCTA+GGG | - | chr4_4:57722734-57722753 | None:intergenic | 35.0% | |
| TTCCAAGAAGAAGAAATCCT+AGG | - | chr4_4:57722735-57722754 | None:intergenic | 35.0% | |
| CTTGGAAGAAGCTGAATAAT+AGG | + | chr4_4:57722748-57722767 | Msa0690200:CDS | 35.0% | |
| AAGCTGAATAATAGGAATGG+TGG | + | chr4_4:57722756-57722775 | Msa0690200:CDS | 35.0% | |
| !! | GATGAAGGTGTTTATGATTC+TGG | + | chr4_4:57722807-57722826 | Msa0690200:CDS | 35.0% |
| !!! | CTGTGTTTTCGTTGATTCTT+TGG | + | chr4_4:57722883-57722902 | Msa0690200:CDS | 35.0% |
| !!! | GTGTTTTCGTTGATTCTTTG+GGG | + | chr4_4:57722885-57722904 | Msa0690200:CDS | 35.0% |
| CAACTAGGTATGAAAAATGC+AGG | - | chr4_4:57722964-57722983 | None:intergenic | 35.0% | |
| ! | CTGCATTTTTCATACCTAGT+TGG | + | chr4_4:57722962-57722981 | Msa0690200:intron | 35.0% |
| !!! | TAGTTGGTTTTGTTGTGACT+CGG | + | chr4_4:57722978-57722997 | Msa0690200:intron | 35.0% |
| !! | AATCCAATAGCTTTGATACG+AGG | - | chr4_4:57723159-57723178 | None:intergenic | 35.0% |
| CAAGTTTGAACTCAATCAAC+TGG | + | chr4_4:57723226-57723245 | Msa0690200:intron | 35.0% | |
| AACAATCCTAGACTTTGGAT+AGG | + | chr4_4:57723388-57723407 | Msa0690200:intron | 35.0% | |
| ATGAGGAAGAACATGAATCA+GGG | - | chr4_4:57723468-57723487 | None:intergenic | 35.0% | |
| AATGAGGAAGAACATGAATC+AGG | - | chr4_4:57723469-57723488 | None:intergenic | 35.0% | |
| GAGAACTTGAATGTACAATC+TGG | + | chr4_4:57723567-57723586 | Msa0690200:CDS | 35.0% | |
| ! | AATGTACAATCTGGTAACGA+TGG | + | chr4_4:57723576-57723595 | Msa0690200:CDS | 35.0% |
| ! | ATGTACAATCTGGTAACGAT+GGG | + | chr4_4:57723577-57723596 | Msa0690200:CDS | 35.0% |
| AGAAATCCTGCAACTTTCTT+TGG | + | chr4_4:57723654-57723673 | Msa0690200:CDS | 35.0% | |
| TGGAAATAGCTAAGTTGCAT+AGG | - | chr4_4:57723699-57723718 | None:intergenic | 35.0% | |
| ACAAATCGAAACTACGCTAA+TGG | - | chr4_4:57723849-57723868 | None:intergenic | 35.0% | |
| TGTAGGTTTAACATCGTGAT+AGG | - | chr4_4:57723985-57724004 | None:intergenic | 35.0% | |
| ATCACGATGTTAAACCTACA+TGG | + | chr4_4:57723985-57724004 | Msa0690200:intron | 35.0% | |
| GGGTAACACTCAAATGATAT+TGG | - | chr4_4:57724180-57724199 | None:intergenic | 35.0% | |
| ! | CTCAAGGTAACAGTTTTTCT+AGG | - | chr4_4:57724201-57724220 | None:intergenic | 35.0% |
| CTAGAAAAACTGTTACCTTG+AGG | + | chr4_4:57724199-57724218 | Msa0690200:intron | 35.0% | |
| TTGAGGCCAGTAAGAAAAAA+AGG | + | chr4_4:57724330-57724349 | Msa0690200:intron | 35.0% | |
| !!! | CACACTCCTTTTTTTCTTAC+TGG | - | chr4_4:57724339-57724358 | None:intergenic | 35.0% |
| CAGTAAGAAAAAAAGGAGTG+TGG | + | chr4_4:57724337-57724356 | Msa0690200:intron | 35.0% | |
| TTGAGTAAAGAGCAGAATTC+CGG | - | chr4_4:57724380-57724399 | None:intergenic | 35.0% | |
| TAAGTAGGGTGATGTATAAG+AGG | - | chr4_4:57724719-57724738 | None:intergenic | 35.0% | |
| CTTATACATCACCCTACTTA+TGG | + | chr4_4:57724719-57724738 | Msa0690200:intron | 35.0% | |
| !! | CTTACCTATTGAACTTGTTG+GGG | - | chr4_4:57724754-57724773 | None:intergenic | 35.0% |
| TAACCAAGAAATGGGGAAAT+GGG | - | chr4_4:57724823-57724842 | None:intergenic | 35.0% | |
| ATAACCAAGAAATGGGGAAA+TGG | - | chr4_4:57724824-57724843 | None:intergenic | 35.0% | |
| ATTTCCCCATTTCTTGGTTA+TGG | + | chr4_4:57724823-57724842 | Msa0690200:intron | 35.0% | |
| TTTCCCCATTTCTTGGTTAT+GGG | + | chr4_4:57724824-57724843 | Msa0690200:intron | 35.0% | |
| TAAGCCCATAACCAAGAAAT+GGG | - | chr4_4:57724831-57724850 | None:intergenic | 35.0% | |
| ACATAGAAACTCCTGAGAAA+TGG | - | chr4_4:57725168-57725187 | None:intergenic | 35.0% | |
| AGGAGTTTCTATGTTTGAGT+TGG | + | chr4_4:57725174-57725193 | Msa0690200:intron | 35.0% | |
| ! | GGAGTTTCTATGTTTGAGTT+GGG | + | chr4_4:57725175-57725194 | Msa0690200:intron | 35.0% |
| TTTGGAGGACTAAAAGTTGA+AGG | + | chr4_4:57726458-57726477 | Msa0690200:intron | 35.0% | |
| CCTCATCAAGTTAAAGCTTA+CGG | + | chr4_4:57726814-57726833 | Msa0690200:intron | 35.0% | |
| CTCATCAAGTTAAAGCTTAC+GGG | + | chr4_4:57726815-57726834 | Msa0690200:intron | 35.0% | |
| TCATCAAGTTAAAGCTTACG+GGG | + | chr4_4:57726816-57726835 | Msa0690200:intron | 35.0% | |
| CTTGTAATGTAAACTCCCTA+AGG | - | chr4_4:57727134-57727153 | None:intergenic | 35.0% | |
| TAATTCCAGTGAGTTGTGTA+GGG | + | chr4_4:57727162-57727181 | Msa0690200:intron | 35.0% | |
| TGCATCAATACGTAAATGGT+CGG | + | chr4_4:57727249-57727268 | Msa0690200:intron | 35.0% | |
| !! | GATGCAGATTTTGATGAGTT+GGG | - | chr4_4:57727354-57727373 | None:intergenic | 35.0% |
| !! | TGATGCAGATTTTGATGAGT+TGG | - | chr4_4:57727355-57727374 | None:intergenic | 35.0% |
| TACAAGAGTTCTATCAGTCA+AGG | + | chr4_4:57727423-57727442 | Msa0690200:CDS | 35.0% | |
| ACCTCAAATGTTAGGTTCAT+TGG | - | chr4_4:57727560-57727579 | None:intergenic | 35.0% | |
| TTGATCTGACCTCAAATGTT+AGG | - | chr4_4:57727568-57727587 | None:intergenic | 35.0% | |
| ! | TAACATTTGAGGTCAGATCA+AGG | + | chr4_4:57727567-57727586 | Msa0690200:CDS | 35.0% |
| ! | AACATTTGAGGTCAGATCAA+GGG | + | chr4_4:57727568-57727587 | Msa0690200:CDS | 35.0% |
| ! | AGATCAAGGGCTTACATTTT+GGG | + | chr4_4:57727581-57727600 | Msa0690200:CDS | 35.0% |
| ! | GTGCTCTTTTTACAAAAGAG+AGG | - | chr4_4:57727747-57727766 | None:intergenic | 35.0% |
| TCTTATGGTTCTTCTCCTGT+AGG | + | chr4_4:57722612-57722631 | Msa0690200:CDS | 40.0% | |
| ACCCTAGGATTTCTTCTTCT+TGG | + | chr4_4:57722730-57722749 | Msa0690200:CDS | 40.0% | |
| ! | TGGTGATGATCTTGATGAAG+AGG | + | chr4_4:57722776-57722795 | Msa0690200:CDS | 40.0% |
| TGATCTTGATGAAGAGGATG+AGG | + | chr4_4:57722782-57722801 | Msa0690200:CDS | 40.0% | |
| ! | AAGGTGTTTATGATTCTGGG+AGG | + | chr4_4:57722811-57722830 | Msa0690200:CDS | 40.0% |
| GTTACCTTAAGAATGACACG+AGG | - | chr4_4:57722930-57722949 | None:intergenic | 40.0% | |
| TGAAAAATGCAGGAGGAAGA+AGG | - | chr4_4:57722954-57722973 | None:intergenic | 40.0% | |
| CTAGGTATGAAAAATGCAGG+AGG | - | chr4_4:57722961-57722980 | None:intergenic | 40.0% | |
| GAGTCACAACAAAACCAACT+AGG | - | chr4_4:57722979-57722998 | None:intergenic | 40.0% | |
| !! | TTGTTGTGACTCGGTATGTT+CGG | + | chr4_4:57722987-57723006 | Msa0690200:intron | 40.0% |
| CAGGAGATATGTCAGAATCA+CGG | + | chr4_4:57723015-57723034 | Msa0690200:intron | 40.0% | |
| ATGCCTCGTATCAAAGCTAT+TGG | + | chr4_4:57723153-57723172 | Msa0690200:intron | 40.0% | |
| AATCAACTGGTCAGAGTCAA+TGG | + | chr4_4:57723239-57723258 | Msa0690200:intron | 40.0% | |
| CTTCATCCTATCCAAAGTCT+AGG | - | chr4_4:57723397-57723416 | None:intergenic | 40.0% | |
| GAAGAACATGAATCAGGGTA+AGG | - | chr4_4:57723463-57723482 | None:intergenic | 40.0% | |
| TGTCATTGAACTCAACGGTT+AGG | + | chr4_4:57723622-57723641 | Msa0690200:CDS | 40.0% | |
| TGAACACCAAAGAAAGTTGC+AGG | - | chr4_4:57723663-57723682 | None:intergenic | 40.0% | |
| ! | TGACACCTCTTTTTCCATGT+AGG | - | chr4_4:57724002-57724021 | None:intergenic | 40.0% |
| !! | ATGGAAAAAGAGGTGTCACT+TGG | + | chr4_4:57724004-57724023 | Msa0690200:intron | 40.0% |
| !! | TGGAAAAAGAGGTGTCACTT+GGG | + | chr4_4:57724005-57724024 | Msa0690200:intron | 40.0% |
| GTGTCAATGTCATGTGACAT+TGG | - | chr4_4:57724156-57724175 | None:intergenic | 40.0% | |
| GAAGTGCACATGTGAATGAA+TGG | + | chr4_4:57724228-57724247 | Msa0690200:intron | 40.0% | |
| GGAAACACAGACAAATTTGC+CGG | + | chr4_4:57724358-57724377 | Msa0690200:intron | 40.0% | |
| TGGGAATGAGCAAATCCATT+TGG | + | chr4_4:57724606-57724625 | Msa0690200:intron | 40.0% | |
| GGGAATGAGCAAATCCATTT+GGG | + | chr4_4:57724607-57724626 | Msa0690200:intron | 40.0% | |
| !! | AGACCCAGCTTTTTAGCATA+TGG | - | chr4_4:57724692-57724711 | None:intergenic | 40.0% |
| AATCCCATTTCCCCATTTCT+TGG | + | chr4_4:57724817-57724836 | Msa0690200:intron | 40.0% | |
| AAGCCCATAACCAAGAAATG+GGG | - | chr4_4:57724830-57724849 | None:intergenic | 40.0% | |
| GTAAGCCCATAACCAAGAAA+TGG | - | chr4_4:57724832-57724851 | None:intergenic | 40.0% | |
| !! | AATAGTACTGGTACACCTCA+AGG | + | chr4_4:57725453-57725472 | Msa0690200:intron | 40.0% |
| AAAGTGGAAATCACACCTTG+AGG | - | chr4_4:57725487-57725506 | None:intergenic | 40.0% | |
| !! | TCAGCCCAAAAGTTCTGAAA+AGG | - | chr4_4:57725649-57725668 | None:intergenic | 40.0% |
| GAGGGACTAAAACGAAAAGT+TGG | - | chr4_4:57726490-57726509 | None:intergenic | 40.0% | |
| !! | CCGTAAGCTTTAACTTGATG+AGG | - | chr4_4:57726817-57726836 | None:intergenic | 40.0% |
| TAACCATAGTTTCCTCCCTT+AGG | + | chr4_4:57727115-57727134 | Msa0690200:intron | 40.0% | |
| AACCATAGTTTCCTCCCTTA+GGG | + | chr4_4:57727116-57727135 | Msa0690200:intron | 40.0% | |
| TAATGTAAACTCCCTAAGGG+AGG | - | chr4_4:57727130-57727149 | None:intergenic | 40.0% | |
| GTAATTCCAGTGAGTTGTGT+AGG | + | chr4_4:57727161-57727180 | Msa0690200:intron | 40.0% | |
| AATTCCAGTGAGTTGTGTAG+GGG | + | chr4_4:57727163-57727182 | Msa0690200:intron | 40.0% | |
| ! | TAAATGGTCGGCTTAGTAGT+AGG | + | chr4_4:57727261-57727280 | Msa0690200:intron | 40.0% |
| GCCAATGAACCTAACATTTG+AGG | + | chr4_4:57727556-57727575 | Msa0690200:CDS | 40.0% | |
| ! | CAGATCAAGGGCTTACATTT+TGG | + | chr4_4:57727580-57727599 | Msa0690200:CDS | 40.0% |
| !! | GGCTTACATTTTGGGAAGAT+TGG | + | chr4_4:57727589-57727608 | Msa0690200:CDS | 40.0% |
| ACATAGTAAAGTGGTCGACG+AGG | - | chr4_4:57722558-57722577 | None:intergenic | 45.0% | |
| GAAGAGGATGAGGATGATGA+AGG | + | chr4_4:57722792-57722811 | Msa0690200:CDS | 45.0% | |
| ! | ATGATTCTGGGAGGAATGTG+AGG | + | chr4_4:57722820-57722839 | Msa0690200:CDS | 45.0% |
| ! | CAAGCCTCGTGTCATTCTTA+AGG | + | chr4_4:57722923-57722942 | Msa0690200:CDS | 45.0% |
| !! | ACAATGTAACATCGACTCCG+TGG | - | chr4_4:57723045-57723064 | None:intergenic | 45.0% |
| GCTAGCTAGAGAGAAGAAGA+GGG | - | chr4_4:57723292-57723311 | None:intergenic | 45.0% | |
| AGCTAGCTAGAGAGAAGAAG+AGG | - | chr4_4:57723293-57723312 | None:intergenic | 45.0% | |
| ! | ACAATCTGGTAACGATGGGA+CGG | + | chr4_4:57723581-57723600 | Msa0690200:CDS | 45.0% |
| ! | TTCCAGCTCACATTAGCTTC+TGG | + | chr4_4:57723714-57723733 | Msa0690200:CDS | 45.0% |
| TAGCAGTAGGGGAAAGAGAA+AGG | - | chr4_4:57723750-57723769 | None:intergenic | 45.0% | |
| !! | AGGTGTCACTTGGGTTACAT+TGG | + | chr4_4:57724014-57724033 | Msa0690200:intron | 45.0% |
| AAACTGTTACCTTGAGGGTG+AGG | + | chr4_4:57724205-57724224 | Msa0690200:intron | 45.0% | |
| AACTGTTACCTTGAGGGTGA+GGG | + | chr4_4:57724206-57724225 | Msa0690200:intron | 45.0% | |
| GAGGGTTTGGGAATTTCCAA+CGG | + | chr4_4:57724262-57724281 | Msa0690200:intron | 45.0% | |
| ! | GTTGCCTGCTTTGAATCTGT+GGG | + | chr4_4:57724284-57724303 | Msa0690200:intron | 45.0% |
| GGGCCATATGCTAAAAAGCT+GGG | + | chr4_4:57724686-57724705 | Msa0690200:intron | 45.0% | |
| TAGGGTGATGTATAAGAGGC+AGG | - | chr4_4:57724715-57724734 | None:intergenic | 45.0% | |
| ACTTTACCGTACTTCTCACG+TGG | + | chr4_4:57724868-57724887 | Msa0690200:intron | 45.0% | |
| AGAGGGACCAAAAGTGAAGA+TGG | + | chr4_4:57726429-57726448 | Msa0690200:intron | 45.0% | |
| GGATACCAAGTTCCACTCTA+CGG | + | chr4_4:57727479-57727498 | Msa0690200:CDS | 45.0% | |
| ! | ACTTTTCATGGCAACCGTCT+TGG | + | chr4_4:57727650-57727669 | Msa0690200:CDS | 45.0% |
| !!! | TAAAAAATTCTAATTTTTTT+TGG | - | chr4_4:57726235-57726254 | None:intergenic | 5.0% |
| !!! | ATGAATTTTTATATATTTTA+TGG | - | chr4_4:57726288-57726307 | None:intergenic | 5.0% |
| !!! | AAAAAATTTTAAATTTTTTC+GGG | + | chr4_4:57726327-57726346 | Msa0690200:intron | 5.0% |
| !!! | AAAATTTTAAAATTTTAAAC+TGG | - | chr4_4:57726560-57726579 | None:intergenic | 5.0% |
| !! | TGGTGAACGGTTTGGTGTTG+AGG | - | chr4_4:57722535-57722554 | None:intergenic | 50.0% |
| TAGTAAAGTGGTCGACGAGG+TGG | - | chr4_4:57722555-57722574 | None:intergenic | 50.0% | |
| GACTCGCGAGAGTGATGAAT+AGG | - | chr4_4:57722678-57722697 | None:intergenic | 50.0% | |
| CGAAGCAGAGTAACGAGAAG+TGG | - | chr4_4:57722703-57722722 | None:intergenic | 50.0% | |
| CTGCTTCGCTGAAAAACCCT+AGG | + | chr4_4:57722715-57722734 | Msa0690200:CDS | 50.0% | |
| CTCGGTATGTTCGGTATCAC+AGG | + | chr4_4:57722996-57723015 | Msa0690200:intron | 50.0% | |
| GTCAGAATCACGGTGATCCA+CGG | + | chr4_4:57723025-57723044 | Msa0690200:intron | 50.0% | |
| ! | CAATCTGGTAACGATGGGAC+GGG | + | chr4_4:57723582-57723601 | Msa0690200:CDS | 50.0% |
| ! | AATCTGGTAACGATGGGACG+GGG | + | chr4_4:57723583-57723602 | Msa0690200:CDS | 50.0% |
| GACCAGAAGCTAATGTGAGC+TGG | - | chr4_4:57723719-57723738 | None:intergenic | 50.0% | |
| ! | GCTCACATTAGCTTCTGGTC+AGG | + | chr4_4:57723719-57723738 | Msa0690200:CDS | 50.0% |
| CAGTAGGGGAAAGAGAAAGG+TGG | - | chr4_4:57723747-57723766 | None:intergenic | 50.0% | |
| GATTCAAAGCAGGCAACCGT+TGG | - | chr4_4:57724281-57724300 | None:intergenic | 50.0% | |
| ! | GGTTGCCTGCTTTGAATCTG+TGG | + | chr4_4:57724283-57724302 | Msa0690200:intron | 50.0% |
| ! | CCTGCTTTGAATCTGTGGGT+GGG | + | chr4_4:57724288-57724307 | Msa0690200:intron | 50.0% |
| ! | CTGCTTTGAATCTGTGGGTG+GGG | + | chr4_4:57724289-57724308 | Msa0690200:intron | 50.0% |
| !!! | TAACTCACGCAGGGGCATTT+TGG | - | chr4_4:57724432-57724451 | None:intergenic | 50.0% |
| AGCGTGAGTTAACTCACGCA+GGG | - | chr4_4:57724564-57724583 | None:intergenic | 50.0% | |
| TAGCGTGAGTTAACTCACGC+AGG | - | chr4_4:57724442-57724461 | None:intergenic | 50.0% | |
| AGCGTGAGTTAACTCACGCA+GGG | + | chr4_4:57724564-57724583 | Msa0690200:intron | 50.0% | |
| GGGGCCATATGCTAAAAAGC+TGG | + | chr4_4:57724685-57724704 | Msa0690200:intron | 50.0% | |
| ACATCACCCTACTTATGGGC+AGG | + | chr4_4:57724724-57724743 | Msa0690200:intron | 50.0% | |
| CATCACCCTACTTATGGGCA+GGG | + | chr4_4:57724725-57724744 | Msa0690200:intron | 50.0% | |
| ATCACCCTACTTATGGGCAG+GGG | + | chr4_4:57724726-57724745 | Msa0690200:intron | 50.0% | |
| GGGACCCCAACAAGTTCAAT+AGG | + | chr4_4:57724747-57724766 | Msa0690200:intron | 50.0% | |
| CTGAAGCCACGTGAGAAGTA+CGG | - | chr4_4:57724877-57724896 | None:intergenic | 50.0% | |
| TACTTCTCACGTGGCTTCAG+AGG | + | chr4_4:57724877-57724896 | Msa0690200:intron | 50.0% | |
| GGAAATCACACCTTGAGGTG+TGG | - | chr4_4:57725482-57725501 | None:intergenic | 50.0% | |
| CTCCCTAAGGGAGGAAACTA+TGG | - | chr4_4:57727121-57727140 | None:intergenic | 50.0% | |
| ATCAGTCAAGGAAGAGCCAG+AGG | + | chr4_4:57727435-57727454 | Msa0690200:CDS | 50.0% | |
| ! | AAGTTAGCTGTGGTGGTGCA+TGG | + | chr4_4:57727458-57727477 | Msa0690200:CDS | 50.0% |
| TACCAAGTTCCACTCTACGG+TGG | + | chr4_4:57727482-57727501 | Msa0690200:CDS | 50.0% | |
| ACCAAGTTCCACTCTACGGT+GGG | + | chr4_4:57727483-57727502 | Msa0690200:CDS | 50.0% | |
| TGGTGAGGTGGTGAACCTAC+AGG | - | chr4_4:57722630-57722649 | None:intergenic | 55.0% | |
| ! | ATCTGGTAACGATGGGACGG+GGG | + | chr4_4:57723584-57723603 | Msa0690200:CDS | 55.0% |
| ! | GCCTGCTTTGAATCTGTGGG+TGG | + | chr4_4:57724287-57724306 | Msa0690200:intron | 55.0% |
| CCCACCCACAGATTCAAAGC+AGG | - | chr4_4:57724291-57724310 | None:intergenic | 55.0% | |
| GCGTGAGTTAACTCACGCAG+GGG | - | chr4_4:57724565-57724584 | None:intergenic | 55.0% | |
| GAGCGTGAGTTAACTCACGC+AGG | + | chr4_4:57724563-57724582 | Msa0690200:intron | 55.0% | |
| TCACCCTACTTATGGGCAGG+GGG | + | chr4_4:57724727-57724746 | Msa0690200:intron | 55.0% | |
| CTTGAGGTGTGGACACCTTG+AGG | - | chr4_4:57725471-57725490 | None:intergenic | 55.0% | |
| ! | CTCAAGGTGTCCACACCTCA+AGG | + | chr4_4:57725469-57725488 | Msa0690200:intron | 55.0% |
| CCAACCCCTACACAACTCAC+TGG | - | chr4_4:57727170-57727189 | None:intergenic | 55.0% | |
| CCAGTGAGTTGTGTAGGGGT+TGG | + | chr4_4:57727167-57727186 | Msa0690200:intron | 55.0% | |
| GAGCCAGAGGAAGTTAGCTG+TGG | + | chr4_4:57727448-57727467 | Msa0690200:CDS | 55.0% | |
| CCACCACAGCTAACTTCCTC+TGG | - | chr4_4:57727454-57727473 | None:intergenic | 55.0% | |
| CCAGAGGAAGTTAGCTGTGG+TGG | + | chr4_4:57727451-57727470 | Msa0690200:CDS | 55.0% | |
| CCAAGTTCCACTCTACGGTG+GGG | + | chr4_4:57727484-57727503 | Msa0690200:CDS | 55.0% | |
| CGACGAGGTGGTGAACGGTT+TGG | - | chr4_4:57722543-57722562 | None:intergenic | 60.0% | |
| GTGGTCGACGAGGTGGTGAA+CGG | - | chr4_4:57722548-57722567 | None:intergenic | 60.0% | |
| GTGCACTTCCCTCACCCTCA+AGG | - | chr4_4:57724217-57724236 | None:intergenic | 60.0% | |
| GGTCCCCCTGCCCATAAGTA+GGG | - | chr4_4:57724733-57724752 | None:intergenic | 60.0% | |
| CCCCACCGTAGAGTGGAACT+TGG | - | chr4_4:57727487-57727506 | None:intergenic | 60.0% | |
| TCCACTCTACGGTGGGGTGT+CGG | + | chr4_4:57727490-57727509 | Msa0690200:CDS | 60.0% | |
| !! | TACGGTGGGGTGTCGGTTCT+TGG | + | chr4_4:57727497-57727516 | Msa0690200:CDS | 60.0% |
| GGGTCCCCCTGCCCATAAGT+AGG | - | chr4_4:57724734-57724753 | None:intergenic | 65.0% | |
| ACCGACACCCCACCGTAGAG+TGG | - | chr4_4:57727494-57727513 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 57722419 | 57727797 | 57722419 | ID=Msa0690200;Name=Msa0690200 |
| chr4_4 | mRNA | 57722419 | 57727797 | 57722419 | ID=Msa0690200-mRNA-1;Parent=Msa0690200;Name=Msa0690200-mRNA-1;_AED=0.04;_eAED=0.04;_QI=46|1|1|1|1|1|3|85|318 |
| chr4_4 | exon | 57722419 | 57722944 | 57722419 | ID=Msa0690200-mRNA-1:exon:15433;Parent=Msa0690200-mRNA-1 |
| chr4_4 | exon | 57723555 | 57723740 | 57723555 | ID=Msa0690200-mRNA-1:exon:15434;Parent=Msa0690200-mRNA-1 |
| chr4_4 | exon | 57727422 | 57727797 | 57727422 | ID=Msa0690200-mRNA-1:exon:15435;Parent=Msa0690200-mRNA-1 |
| chr4_4 | five_prime_UTR | 57722419 | 57722464 | 57722419 | ID=Msa0690200-mRNA-1:five_prime_utr;Parent=Msa0690200-mRNA-1 |
| chr4_4 | CDS | 57722465 | 57722944 | 57722465 | ID=Msa0690200-mRNA-1:cds;Parent=Msa0690200-mRNA-1 |
| chr4_4 | CDS | 57723555 | 57723740 | 57723555 | ID=Msa0690200-mRNA-1:cds;Parent=Msa0690200-mRNA-1 |
| chr4_4 | CDS | 57727422 | 57727712 | 57727422 | ID=Msa0690200-mRNA-1:cds;Parent=Msa0690200-mRNA-1 |
| chr4_4 | three_prime_UTR | 57727713 | 57727797 | 57727713 | ID=Msa0690200-mRNA-1:three_prime_utr;Parent=Msa0690200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
