Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0607130 | XP_013456582.1 | 97.799 | 318 | 7 | 0 | 1 | 318 | 1 | 318 | 0.0 | 647 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0607130 | Msa0647330 | 0.909905 | 3.395337e-82 | -8.615850e-47 |
| Msa0607130 | Msa0690200 | 0.900278 | 8.593490e-78 | -8.615850e-47 |
| Msa0521510 | Msa0607130 | 0.801008 | 1.102770e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0607130 | MtrunA17_Chr4g0038691 | 97.799 | 318 | 7 | 0 | 1 | 318 | 1 | 318 | 0.0 | 647 |
| Msa0607130 | MtrunA17_Chr6g0483441 | 46.395 | 319 | 138 | 10 | 6 | 317 | 1 | 293 | 5.29e-76 | 234 |
| Msa0607130 | MtrunA17_Chr4g0053001 | 44.817 | 328 | 161 | 9 | 4 | 318 | 10 | 330 | 4.59e-71 | 223 |
| Msa0607130 | MtrunA17_Chr8g0392551 | 45.426 | 317 | 146 | 10 | 6 | 317 | 1 | 295 | 1.05e-64 | 206 |
| Msa0607130 | MtrunA17_Chr2g0331671 | 38.710 | 310 | 159 | 10 | 24 | 318 | 16 | 309 | 3.54e-56 | 184 |
| Msa0607130 | MtrunA17_Chr6g0486001 | 35.463 | 313 | 175 | 10 | 6 | 307 | 1 | 297 | 8.57e-51 | 170 |
| Msa0607130 | MtrunA17_Chr8g0379281 | 46.222 | 225 | 82 | 7 | 1 | 224 | 1 | 187 | 5.51e-40 | 139 |
| Msa0607130 | MtrunA17_Chr8g0379271 | 61.458 | 96 | 35 | 1 | 223 | 318 | 1 | 94 | 1.11e-33 | 119 |
| Msa0607130 | MtrunA17_Chr3g0091821 | 35.849 | 159 | 90 | 3 | 160 | 315 | 41 | 190 | 5.72e-25 | 99.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0607130 | AT2G41990.1 | 53.035 | 313 | 128 | 6 | 6 | 316 | 1 | 296 | 8.93e-95 | 283 |
| Msa0607130 | AT4G35170.1 | 54.362 | 298 | 122 | 7 | 26 | 315 | 5 | 296 | 8.05e-94 | 281 |
| Msa0607130 | AT1G45688.1 | 42.363 | 347 | 153 | 11 | 6 | 315 | 1 | 337 | 6.67e-71 | 223 |
| Msa0607130 | AT5G42860.1 | 43.235 | 340 | 138 | 12 | 6 | 315 | 1 | 315 | 2.58e-70 | 221 |
| Msa0607130 | AT1G45688.2 | 44.758 | 248 | 105 | 11 | 6 | 231 | 1 | 238 | 3.51e-48 | 162 |
| Msa0607130 | AT3G24605.1 | 31.908 | 304 | 169 | 9 | 4 | 296 | 1 | 277 | 1.48e-37 | 135 |
| Msa0607130 | AT3G24600.1 | 37.438 | 203 | 119 | 2 | 114 | 312 | 99 | 297 | 2.47e-36 | 133 |
Find 63 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGATCAAGGGCTTACATTT+TGG | 0.150164 | 4_2:+53848006 | Msa0607130:CDS |
| ACCCTAGGATTTCTTCTTCT+TGG | 0.203956 | 4_2:+53843595 | Msa0607130:CDS |
| GATGAAGGTGTTTATGATTC+TGG | 0.209226 | 4_2:+53843672 | Msa0607130:CDS |
| TAAATTTATTGATGTTCTTT+TGG | 0.218622 | 4_2:+53848136 | Msa0607130:exon |
| AGAAATCCTGCAACTTTCTT+TGG | 0.253597 | 4_2:+53844515 | Msa0607130:CDS |
| CTTGGAAGAAGCTGAATAAT+AGG | 0.299657 | 4_2:+53843613 | Msa0607130:CDS |
| AAAGATAGTAGTGAAAATTT+TGG | 0.301057 | 4_2:-53843512 | None:intergenic |
| TACGGTGGGGTGTCGGTTCT+TGG | 0.311163 | 4_2:+53847923 | Msa0607130:CDS |
| ACCTCAAATGTTAGGTTCAT+TGG | 0.313920 | 4_2:-53847983 | None:intergenic |
| TTAAGTCTACTTTCTATCAT+AGG | 0.334030 | 4_2:+53848038 | Msa0607130:CDS |
| TTGATCTGACCTCAAATGTT+AGG | 0.348971 | 4_2:-53847991 | None:intergenic |
| TTCCAGCTCACATTAGCTTC+TGG | 0.372922 | 4_2:+53844575 | Msa0607130:CDS |
| ATGAAGGTGTTTATGATTCT+GGG | 0.416622 | 4_2:+53843673 | Msa0607130:CDS |
| CAAGCCTCGTGTCATTCTTA+AGG | 0.433666 | 4_2:+53843788 | Msa0607130:CDS |
| GCCAATGAACCTAACATTTG+AGG | 0.444860 | 4_2:+53847982 | Msa0607130:CDS |
| TGAACACCAAAGAAAGTTGC+AGG | 0.445969 | 4_2:-53844521 | None:intergenic |
| TGTCATTGAACTCAACGGTT+AGG | 0.446675 | 4_2:+53844483 | Msa0607130:CDS |
| TTCCAAGAAGAAGAAATCCT+AGG | 0.459677 | 4_2:-53843597 | None:intergenic |
| TCTTATGGTTCTTCTCCTGT+AGG | 0.462684 | 4_2:+53843477 | Msa0607130:CDS |
| TGGTGAACGGTTTGGTGTTG+AGG | 0.475030 | 4_2:-53843397 | None:intergenic |
| GACTCGCGAGAGTGATGAAT+AGG | 0.478886 | 4_2:-53843540 | None:intergenic |
| CGAAGCAGAGTAACGAGAAG+TGG | 0.487540 | 4_2:-53843565 | None:intergenic |
| CCACCACAGCTAACTTCCTC+TGG | 0.510776 | 4_2:-53847877 | None:intergenic |
| TGGTGAGGTGGTGAACCTAC+AGG | 0.511052 | 4_2:-53843492 | None:intergenic |
| TCCAAGAAGAAGAAATCCTA+GGG | 0.519055 | 4_2:-53843596 | None:intergenic |
| GAGAACTTGAATGTACAATC+TGG | 0.519325 | 4_2:+53844428 | Msa0607130:CDS |
| GACCAGAAGCTAATGTGAGC+TGG | 0.519368 | 4_2:-53844577 | None:intergenic |
| CCAGAGGAAGTTAGCTGTGG+TGG | 0.524543 | 4_2:+53847877 | Msa0607130:CDS |
| TAACATTTGAGGTCAGATCA+AGG | 0.525368 | 4_2:+53847993 | Msa0607130:CDS |
| CGACGAGGTGGTGAACGGTT+TGG | 0.536473 | 4_2:-53843405 | None:intergenic |
| TGGAAATAGCTAAGTTGCAT+AGG | 0.545685 | 4_2:-53844557 | None:intergenic |
| CCCCACCGTAGAGTGGAACT+TGG | 0.548890 | 4_2:-53847910 | None:intergenic |
| GCTCACATTAGCTTCTGGTC+AGG | 0.549576 | 4_2:+53844580 | Msa0607130:CDS |
| ATGATTCTGGGAGGAATGTG+AGG | 0.550183 | 4_2:+53843685 | Msa0607130:CDS |
| TGATCTTGATGAAGAGGATG+AGG | 0.555043 | 4_2:+53843647 | Msa0607130:CDS |
| TCCACTCTACGGTGGGGTGT+CGG | 0.555370 | 4_2:+53847916 | Msa0607130:CDS |
| ACCAAGTTCCACTCTACGGT+GGG | 0.556211 | 4_2:+53847909 | Msa0607130:CDS |
| TTCAATGACAACATATCTGT+TGG | 0.560744 | 4_2:-53844470 | None:intergenic |
| TACAAGAGTTCTATCAGTCA+AGG | 0.565497 | 4_2:+53847849 | Msa0607130:CDS |
| AAGTTAGCTGTGGTGGTGCA+TGG | 0.569699 | 4_2:+53847884 | Msa0607130:CDS |
| GTGGTCGACGAGGTGGTGAA+CGG | 0.571771 | 4_2:-53843410 | None:intergenic |
| AACATTTGAGGTCAGATCAA+GGG | 0.576833 | 4_2:+53847994 | Msa0607130:CDS |
| GGACTTTGAACATAGTAAAG+TGG | 0.576967 | 4_2:-53843429 | None:intergenic |
| ACCGACACCCCACCGTAGAG+TGG | 0.581120 | 4_2:-53847917 | None:intergenic |
| GGATACCAAGTTCCACTCTA+CGG | 0.586208 | 4_2:+53847905 | Msa0607130:CDS |
| AAGCTGAATAATAGGAATGG+TGG | 0.590755 | 4_2:+53843621 | Msa0607130:CDS |
| AATGTACAATCTGGTAACGA+TGG | 0.591331 | 4_2:+53844437 | Msa0607130:CDS |
| TGGTGATGATCTTGATGAAG+AGG | 0.591542 | 4_2:+53843641 | Msa0607130:CDS |
| CAATCTGGTAACGATGGGAC+GGG | 0.593412 | 4_2:+53844443 | Msa0607130:CDS |
| ATCAGTCAAGGAAGAGCCAG+AGG | 0.595434 | 4_2:+53847861 | Msa0607130:CDS |
| ATGTACAATCTGGTAACGAT+GGG | 0.608310 | 4_2:+53844438 | Msa0607130:CDS |
| AAGAAGCTGAATAATAGGAA+TGG | 0.611476 | 4_2:+53843618 | Msa0607130:CDS |
| ACAATCTGGTAACGATGGGA+CGG | 0.615710 | 4_2:+53844442 | Msa0607130:CDS |
| TATGTTGTCATTGAACTCAA+CGG | 0.628115 | 4_2:+53844478 | Msa0607130:CDS |
| AGAAGAAACAACAAACAGCA+TGG | 0.633145 | 4_2:+53843365 | Msa0607130:CDS |
| GAAGAGGATGAGGATGATGA+AGG | 0.642247 | 4_2:+53843657 | Msa0607130:CDS |
| GAGCCAGAGGAAGTTAGCTG+TGG | 0.644458 | 4_2:+53847874 | Msa0607130:CDS |
| TAGTAAAGTGGTCGACGAGG+TGG | 0.650497 | 4_2:-53843417 | None:intergenic |
| TACCAAGTTCCACTCTACGG+TGG | 0.659688 | 4_2:+53847908 | Msa0607130:CDS |
| ACATAGTAAAGTGGTCGACG+AGG | 0.674681 | 4_2:-53843420 | None:intergenic |
| CCAAGTTCCACTCTACGGTG+GGG | 0.681684 | 4_2:+53847910 | Msa0607130:CDS |
| AAGGTGTTTATGATTCTGGG+AGG | 0.699466 | 4_2:+53843676 | Msa0607130:CDS |
| GTTACCTTAAGAATGACACG+AGG | 0.801590 | 4_2:-53843792 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAAATAAAATAAATAA+TGG | + | chr4_2:53844376-53844395 | Msa0607130:intron | 0.0% |
| !! | ATTAAATATTTCACATAAAT+TGG | - | chr4_2:53844287-53844306 | None:intergenic | 10.0% |
| !! | AATATTTAATTAAATGTTGT+AGG | + | chr4_2:53844297-53844316 | Msa0607130:intron | 10.0% |
| !! | ATATTTAATTAAATGTTGTA+GGG | + | chr4_2:53844298-53844317 | Msa0607130:intron | 10.0% |
| !!! | GATAATTTTGATTATTTAAA+AGG | + | chr4_2:53844683-53844702 | Msa0607130:intron | 10.0% |
| !!! | ATATTTTTTTGTTATATTGT+TGG | + | chr4_2:53846871-53846890 | Msa0607130:intron | 10.0% |
| !!! | TTTTAATTTAGTTTCTATGA+TGG | + | chr4_2:53843947-53843966 | Msa0607130:intron | 15.0% |
| !! | CTTAAATAATTACTCATAAA+TGG | + | chr4_2:53844218-53844237 | Msa0607130:intron | 15.0% |
| !! | AAATAATGGTTGAATAAATA+TGG | + | chr4_2:53844390-53844409 | Msa0607130:intron | 15.0% |
| !!! | AGTTTTGAAAATTATCAAAA+TGG | + | chr4_2:53844802-53844821 | Msa0607130:intron | 15.0% |
| !!! | TTTGTTTTTGCATTAAAAAA+TGG | + | chr4_2:53845659-53845678 | Msa0607130:intron | 15.0% |
| !!! | TACACTTTTTTAAATGATAA+AGG | - | chr4_2:53846738-53846757 | None:intergenic | 15.0% |
| !! | TATAGAAAAAAGTTGTTTAA+GGG | - | chr4_2:53846811-53846830 | None:intergenic | 15.0% |
| !! | TTATAGAAAAAAGTTGTTTA+AGG | - | chr4_2:53846812-53846831 | None:intergenic | 15.0% |
| !!! | TTGTTTTTTTTTTGTTCATT+TGG | + | chr4_2:53847281-53847300 | Msa0607130:intron | 15.0% |
| !!! | ACATTGATAATTTTTTACAT+TGG | - | chr4_2:53847394-53847413 | None:intergenic | 15.0% |
| !!! | TAAATTTATTGATGTTCTTT+TGG | + | chr4_2:53848136-53848155 | Msa0607130:exon | 15.0% |
| !!! | AAATTTATTGATGTTCTTTT+GGG | + | chr4_2:53848137-53848156 | Msa0607130:exon | 15.0% |
| !! | AAAAAGAGAAGAAGAAAAAT+GGG | + | chr4_2:53843312-53843331 | Msa0607130:exon | 20.0% |
| !!! | AAAGATAGTAGTGAAAATTT+TGG | - | chr4_2:53843515-53843534 | None:intergenic | 20.0% |
| !! | TAATATATAAATGCAGAAAG+TGG | - | chr4_2:53844191-53844210 | None:intergenic | 20.0% |
| !! | AAATAATTACTCATAAATGG+AGG | + | chr4_2:53844221-53844240 | Msa0607130:intron | 20.0% |
| !! | AAACAAATATTAGAAGAATG+AGG | - | chr4_2:53844346-53844365 | None:intergenic | 20.0% |
| !!! | GTAGAGTTTTTAGAAAATTA+CGG | - | chr4_2:53844777-53844796 | None:intergenic | 20.0% |
| !!! | ATGAATGGAATTTTTTTATG+AGG | + | chr4_2:53845104-53845123 | Msa0607130:intron | 20.0% |
| !!! | TGAATGGAATTTTTTTATGA+GGG | + | chr4_2:53845105-53845124 | Msa0607130:intron | 20.0% |
| !!! | ACATTTTAGTCATTTACTTT+GGG | + | chr4_2:53845470-53845489 | Msa0607130:intron | 20.0% |
| !! | CAATTAAATTGAACTTTGTT+CGG | - | chr4_2:53845537-53845556 | None:intergenic | 20.0% |
| !! | AATTTAATTGGTACACTTTA+TGG | + | chr4_2:53845547-53845566 | Msa0607130:intron | 20.0% |
| !! | ATTTAATTGGTACACTTTAT+GGG | + | chr4_2:53845548-53845567 | Msa0607130:intron | 20.0% |
| !!! | TGCATTACATTTTGAATTAT+TGG | + | chr4_2:53845790-53845809 | Msa0607130:intron | 20.0% |
| !!! | ATTACGTTTTTTAGATAAAC+AGG | + | chr4_2:53845817-53845836 | Msa0607130:intron | 20.0% |
| !!! | TTACGTTTTTTAGATAAACA+GGG | + | chr4_2:53845818-53845837 | Msa0607130:intron | 20.0% |
| !!! | TCTTTTTTCTCTTTTTTCAT+TGG | + | chr4_2:53845923-53845942 | Msa0607130:intron | 20.0% |
| !!! | AAAAGAATTGTTTTTATGAC+TGG | + | chr4_2:53846196-53846215 | Msa0607130:intron | 20.0% |
| !! | ACATCTTCATAAAAATTAGT+TGG | + | chr4_2:53846502-53846521 | Msa0607130:intron | 20.0% |
| !!! | GTTTTTTGTATTGAAAATTG+AGG | - | chr4_2:53846631-53846650 | None:intergenic | 20.0% |
| !! | TCTATAATAAAGATTGTTGT+TGG | + | chr4_2:53846825-53846844 | Msa0607130:intron | 20.0% |
| !!! | TTGTTGGTGTTATTTTAAAT+TGG | + | chr4_2:53846887-53846906 | Msa0607130:intron | 20.0% |
| !!! | TTTTCGCTAGTTAATAATAA+TGG | + | chr4_2:53847034-53847053 | Msa0607130:intron | 20.0% |
| !!! | TTTTTTCATGTATAGTTATG+TGG | - | chr4_2:53847217-53847236 | None:intergenic | 20.0% |
| !! | TATTCAAGAAATAAAACTCT+AGG | + | chr4_2:53847462-53847481 | Msa0607130:intron | 20.0% |
| !! | AACTCTATACTTAAATTAAG+TGG | + | chr4_2:53847505-53847524 | Msa0607130:intron | 20.0% |
| !! | ACTCTATACTTAAATTAAGT+GGG | + | chr4_2:53847506-53847525 | Msa0607130:intron | 20.0% |
| ! | CAAAAAGAGAAGAAGAAAAA+TGG | + | chr4_2:53843311-53843330 | Msa0607130:exon | 25.0% |
| !!! | AAGACATTTTTTCAACATCA+TGG | - | chr4_2:53843461-53843480 | None:intergenic | 25.0% |
| ! | GATGTTGAAAAAATGTCTTA+TGG | + | chr4_2:53843462-53843481 | Msa0607130:CDS | 25.0% |
| ! | AAAAAAACAATCCTAGACTT+TGG | + | chr4_2:53844244-53844263 | Msa0607130:intron | 25.0% |
| ! | TTGCAATAAATTTAGCAGTA+GGG | - | chr4_2:53844623-53844642 | None:intergenic | 25.0% |
| ! | TTTGCAATAAATTTAGCAGT+AGG | - | chr4_2:53844624-53844643 | None:intergenic | 25.0% |
| !!! | GAATTTTTTTATGAGGGTTT+GGG | + | chr4_2:53845111-53845130 | Msa0607130:intron | 25.0% |
| !!! | GACATTTTAGTCATTTACTT+TGG | + | chr4_2:53845469-53845488 | Msa0607130:intron | 25.0% |
| ! | CGAACAAAGTTCAATTTAAT+TGG | + | chr4_2:53845535-53845554 | Msa0607130:intron | 25.0% |
| ! | TTTAATTGGTACACTTTATG+GGG | + | chr4_2:53845549-53845568 | Msa0607130:intron | 25.0% |
| !!! | TACGTTTTTTAGATAAACAG+GGG | + | chr4_2:53845819-53845838 | Msa0607130:intron | 25.0% |
| ! | ATCAAAAAGTTGTCATAAAG+TGG | + | chr4_2:53846016-53846035 | Msa0607130:intron | 25.0% |
| !! | TTGTACAAATACTATTTCTC+AGG | + | chr4_2:53846039-53846058 | Msa0607130:intron | 25.0% |
| !!! | TTTTATGACTGGTGTTTTTT+TGG | + | chr4_2:53846207-53846226 | Msa0607130:intron | 25.0% |
| !!! | GTGTTTTTTTGGTATTTAGA+TGG | + | chr4_2:53846218-53846237 | Msa0607130:intron | 25.0% |
| ! | ACAAAAAGAAAGAATAGTAC+TGG | + | chr4_2:53846319-53846338 | Msa0607130:intron | 25.0% |
| ! | GCAAAGTTATAACTAAAAAG+TGG | - | chr4_2:53846476-53846495 | None:intergenic | 25.0% |
| !! | AAAGGATACACATTTTATGA+AGG | - | chr4_2:53846570-53846589 | None:intergenic | 25.0% |
| !! | AGTTGTTTAAGGGTATAATT+GGG | - | chr4_2:53846801-53846820 | None:intergenic | 25.0% |
| !! | AAGTTGTTTAAGGGTATAAT+TGG | - | chr4_2:53846802-53846821 | None:intergenic | 25.0% |
| ! | ATTATTAACTAGCGAAAAGA+CGG | - | chr4_2:53847032-53847051 | None:intergenic | 25.0% |
| ! | CATAGGTTAAGACAAAATTA+AGG | - | chr4_2:53847084-53847103 | None:intergenic | 25.0% |
| !! | ATTTTGTCTTAACCTATGTT+TGG | + | chr4_2:53847086-53847105 | Msa0607130:intron | 25.0% |
| ! | TTAAATGTAGAACCAAACAT+AGG | - | chr4_2:53847101-53847120 | None:intergenic | 25.0% |
| ! | TTGTTCATTTGGTTAATTAG+AGG | + | chr4_2:53847292-53847311 | Msa0607130:intron | 25.0% |
| !! | TCTAGGAAAAAGTTTTTCTT+TGG | + | chr4_2:53847479-53847498 | Msa0607130:intron | 25.0% |
| ! | CTCTATACTTAAATTAAGTG+GGG | + | chr4_2:53847507-53847526 | Msa0607130:intron | 25.0% |
| ! | ATACTCATATTCATATGAGT+TGG | - | chr4_2:53847624-53847643 | None:intergenic | 25.0% |
| ! | TTAAGTCTACTTTCTATCAT+AGG | + | chr4_2:53848038-53848057 | Msa0607130:CDS | 25.0% |
| !! | AATTAAGATGTTTTCCAAGA+CGG | - | chr4_2:53848093-53848112 | None:intergenic | 25.0% |
| ! | TTTTCAACATCATGGTTTGA+AGG | - | chr4_2:53843453-53843472 | None:intergenic | 30.0% |
| !! | TAGTAGTGAAAATTTTGGTG+AGG | - | chr4_2:53843510-53843529 | None:intergenic | 30.0% |
| AAGAAGCTGAATAATAGGAA+TGG | + | chr4_2:53843618-53843637 | Msa0607130:CDS | 30.0% | |
| !! | ATGAAGGTGTTTATGATTCT+GGG | + | chr4_2:53843673-53843692 | Msa0607130:CDS | 30.0% |
| !!! | TGTGTTTTCGTTGATTCTTT+GGG | + | chr4_2:53843749-53843768 | Msa0607130:CDS | 30.0% |
| TTCAATGACAACATATCTGT+TGG | - | chr4_2:53844473-53844492 | None:intergenic | 30.0% | |
| TATGTTGTCATTGAACTCAA+CGG | + | chr4_2:53844478-53844497 | Msa0607130:CDS | 30.0% | |
| TGCAATAAATTTAGCAGTAG+GGG | - | chr4_2:53844622-53844641 | None:intergenic | 30.0% | |
| CGTGATAGGTATATAAGAAT+TGG | - | chr4_2:53844832-53844851 | None:intergenic | 30.0% | |
| TTAAACCTACATGGAAAAAG+AGG | + | chr4_2:53844855-53844874 | Msa0607130:intron | 30.0% | |
| CGATTAACATCACATGATAT+TGG | - | chr4_2:53844905-53844924 | None:intergenic | 30.0% | |
| GAAAATTACTTGTGACATTC+TGG | - | chr4_2:53844929-53844948 | None:intergenic | 30.0% | |
| ATGTGACATTGGTATGATAT+CGG | - | chr4_2:53845006-53845025 | None:intergenic | 30.0% | |
| GGGTAACATTCAAATGATAT+TGG | - | chr4_2:53845041-53845060 | None:intergenic | 30.0% | |
| ! | TCAAGGTAACAGTTTTTCTA+GGG | - | chr4_2:53845061-53845080 | None:intergenic | 30.0% |
| TAGAAAAACTGTTACCTTGA+GGG | + | chr4_2:53845061-53845080 | Msa0607130:intron | 30.0% | |
| !!! | GGAATTTTTTTATGAGGGTT+TGG | + | chr4_2:53845110-53845129 | Msa0607130:intron | 30.0% |
| CAAAATTGCGTATCAATTTG+AGG | + | chr4_2:53845174-53845193 | Msa0607130:intron | 30.0% | |
| ! | AATTTTGCTCTTTACCCAAA+TGG | - | chr4_2:53845507-53845526 | None:intergenic | 30.0% |
| TTATACATCACCCTACTTAT+GGG | + | chr4_2:53845603-53845622 | Msa0607130:intron | 30.0% | |
| TTACCTATTGAACTTTGTTG+GGG | - | chr4_2:53845637-53845656 | None:intergenic | 30.0% | |
| CTTACCTATTGAACTTTGTT+GGG | - | chr4_2:53845638-53845657 | None:intergenic | 30.0% | |
| TCTTACCTATTGAACTTTGT+TGG | - | chr4_2:53845639-53845658 | None:intergenic | 30.0% | |
| !!! | CTGTATTTTTTGTCTACAAG+AGG | + | chr4_2:53845846-53845865 | Msa0607130:intron | 30.0% |
| ! | TTTTCATTGGCCAAAAACAA+TGG | + | chr4_2:53845936-53845955 | Msa0607130:intron | 30.0% |
| ! | TTTTCTCTCTCCATTGTTTT+TGG | - | chr4_2:53845949-53845968 | None:intergenic | 30.0% |
| ! | TTGGGAAAGATTTTAAACGT+TGG | + | chr4_2:53846078-53846097 | Msa0607130:intron | 30.0% |
| ! | TGGGAAAGATTTTAAACGTT+GGG | + | chr4_2:53846079-53846098 | Msa0607130:intron | 30.0% |
| !!! | ACGTTGGGTTTTACTTTTTT+TGG | + | chr4_2:53846094-53846113 | Msa0607130:intron | 30.0% |
| !!! | TTGGGTTTTACTTTTTTTGG+TGG | + | chr4_2:53846097-53846116 | Msa0607130:intron | 30.0% |
| ! | TGTATCCTTTTCAGAACTTT+TGG | + | chr4_2:53846580-53846599 | Msa0607130:intron | 30.0% |
| ! | GTATCCTTTTCAGAACTTTT+GGG | + | chr4_2:53846581-53846600 | Msa0607130:intron | 30.0% |
| ! | TTAACATGTTAAGTTGCTCT+TGG | + | chr4_2:53847117-53847136 | Msa0607130:intron | 30.0% |
| ! | TAACATGTTAAGTTGCTCTT+GGG | + | chr4_2:53847118-53847137 | Msa0607130:intron | 30.0% |
| !! | GACTTATTTTCTCATACAAG+TGG | - | chr4_2:53847344-53847363 | None:intergenic | 30.0% |
| TTAAATTAAGTGGGGATAAC+TGG | + | chr4_2:53847515-53847534 | Msa0607130:intron | 30.0% | |
| TTGTAATGTAAACTCCCTAA+GGG | - | chr4_2:53847559-53847578 | None:intergenic | 30.0% | |
| TGAATGCATCAATACGTAAA+TGG | + | chr4_2:53847671-53847690 | Msa0607130:intron | 30.0% | |
| !! | AGATGTTCAATCACTTTTCA+TGG | + | chr4_2:53848064-53848083 | Msa0607130:CDS | 30.0% |
| ! | TTTATTGATGTTCTTTTGGG+TGG | + | chr4_2:53848140-53848159 | Msa0607130:three_prime_UTR | 30.0% |
| AAGAGAAGAAGAAAAATGGG+AGG | + | chr4_2:53843315-53843334 | Msa0607130:exon | 35.0% | |
| AGAAGAAACAACAAACAGCA+TGG | + | chr4_2:53843365-53843384 | Msa0607130:CDS | 35.0% | |
| GGACTTTGAACATAGTAAAG+TGG | - | chr4_2:53843432-53843451 | None:intergenic | 35.0% | |
| !! | TAGTGAAAATTTTGGTGAGG+TGG | - | chr4_2:53843507-53843526 | None:intergenic | 35.0% |
| TCCAAGAAGAAGAAATCCTA+GGG | - | chr4_2:53843599-53843618 | None:intergenic | 35.0% | |
| TTCCAAGAAGAAGAAATCCT+AGG | - | chr4_2:53843600-53843619 | None:intergenic | 35.0% | |
| CTTGGAAGAAGCTGAATAAT+AGG | + | chr4_2:53843613-53843632 | Msa0607130:CDS | 35.0% | |
| AAGCTGAATAATAGGAATGG+TGG | + | chr4_2:53843621-53843640 | Msa0607130:CDS | 35.0% | |
| !! | GATGAAGGTGTTTATGATTC+TGG | + | chr4_2:53843672-53843691 | Msa0607130:CDS | 35.0% |
| !!! | CTGTGTTTTCGTTGATTCTT+TGG | + | chr4_2:53843748-53843767 | Msa0607130:CDS | 35.0% |
| !!! | GTGTTTTCGTTGATTCTTTG+GGG | + | chr4_2:53843750-53843769 | Msa0607130:CDS | 35.0% |
| CAACTAGGTATGAAAAATGC+AGG | - | chr4_2:53843829-53843848 | None:intergenic | 35.0% | |
| ! | CTGCATTTTTCATACCTAGT+TGG | + | chr4_2:53843827-53843846 | Msa0607130:intron | 35.0% |
| !!! | TAGTTGGTTTTGTTGTGACT+CGG | + | chr4_2:53843843-53843862 | Msa0607130:intron | 35.0% |
| !! | AATCCAATAGCTTTGATACG+AGG | - | chr4_2:53844024-53844043 | None:intergenic | 35.0% |
| CAAGTTTGAACTCAATCAAC+TGG | + | chr4_2:53844091-53844110 | Msa0607130:intron | 35.0% | |
| AACAATCCTAGACTTTGGAT+AGG | + | chr4_2:53844249-53844268 | Msa0607130:intron | 35.0% | |
| ATGAGGAAGAACATGAATCA+GGG | - | chr4_2:53844329-53844348 | None:intergenic | 35.0% | |
| AATGAGGAAGAACATGAATC+AGG | - | chr4_2:53844330-53844349 | None:intergenic | 35.0% | |
| GAGAACTTGAATGTACAATC+TGG | + | chr4_2:53844428-53844447 | Msa0607130:CDS | 35.0% | |
| ! | AATGTACAATCTGGTAACGA+TGG | + | chr4_2:53844437-53844456 | Msa0607130:CDS | 35.0% |
| ! | ATGTACAATCTGGTAACGAT+GGG | + | chr4_2:53844438-53844457 | Msa0607130:CDS | 35.0% |
| AGAAATCCTGCAACTTTCTT+TGG | + | chr4_2:53844515-53844534 | Msa0607130:CDS | 35.0% | |
| TGGAAATAGCTAAGTTGCAT+AGG | - | chr4_2:53844560-53844579 | None:intergenic | 35.0% | |
| ACAAATCGAAACTACGCTAA+TGG | - | chr4_2:53844710-53844729 | None:intergenic | 35.0% | |
| TGTAGGTTTAACATCGTGAT+AGG | - | chr4_2:53844846-53844865 | None:intergenic | 35.0% | |
| ATCACGATGTTAAACCTACA+TGG | + | chr4_2:53844846-53844865 | Msa0607130:intron | 35.0% | |
| ! | CTCAAGGTAACAGTTTTTCT+AGG | - | chr4_2:53845062-53845081 | None:intergenic | 35.0% |
| CTAGAAAAACTGTTACCTTG+AGG | + | chr4_2:53845060-53845079 | Msa0607130:intron | 35.0% | |
| TTGAGGCCAGTAAGAAAAAA+AGG | + | chr4_2:53845191-53845210 | Msa0607130:intron | 35.0% | |
| !!! | CACACTCCTTTTTTTCTTAC+TGG | - | chr4_2:53845200-53845219 | None:intergenic | 35.0% |
| CAGTAAGAAAAAAAGGAGTG+TGG | + | chr4_2:53845198-53845217 | Msa0607130:intron | 35.0% | |
| TTGAGTAAAGAGCAGAATTC+CGG | - | chr4_2:53845241-53845260 | None:intergenic | 35.0% | |
| TAAGTAGGGTGATGTATAAG+AGG | - | chr4_2:53845602-53845621 | None:intergenic | 35.0% | |
| CTTATACATCACCCTACTTA+TGG | + | chr4_2:53845602-53845621 | Msa0607130:intron | 35.0% | |
| AGGAGTTTCTATGTTTGAGT+TGG | + | chr4_2:53846059-53846078 | Msa0607130:intron | 35.0% | |
| ! | GGAGTTTCTATGTTTGAGTT+GGG | + | chr4_2:53846060-53846079 | Msa0607130:intron | 35.0% |
| !!! | TTTTTTTGGTGGTGAAACGT+TGG | + | chr4_2:53846108-53846127 | Msa0607130:intron | 35.0% |
| ATTGCTAAAAGACACCTTCA+TGG | - | chr4_2:53846416-53846435 | None:intergenic | 35.0% | |
| AAAGTGGAAATCACACTTTG+AGG | - | chr4_2:53846460-53846479 | None:intergenic | 35.0% | |
| CCTCATCAAGTTAAAGCTTA+CGG | + | chr4_2:53847241-53847260 | Msa0607130:intron | 35.0% | |
| CTCATCAAGTTAAAGCTTAC+GGG | + | chr4_2:53847242-53847261 | Msa0607130:intron | 35.0% | |
| TCATCAAGTTAAAGCTTACG+GGG | + | chr4_2:53847243-53847262 | Msa0607130:intron | 35.0% | |
| CTTGTAATGTAAACTCCCTA+AGG | - | chr4_2:53847560-53847579 | None:intergenic | 35.0% | |
| TAATTCCAGTGAGTTGTGTA+GGG | + | chr4_2:53847588-53847607 | Msa0607130:intron | 35.0% | |
| TGCATCAATACGTAAATGGT+CGG | + | chr4_2:53847675-53847694 | Msa0607130:intron | 35.0% | |
| !! | GATGCAGATTTTGATGAGTT+GGG | - | chr4_2:53847780-53847799 | None:intergenic | 35.0% |
| !! | TGATGCAGATTTTGATGAGT+TGG | - | chr4_2:53847781-53847800 | None:intergenic | 35.0% |
| TACAAGAGTTCTATCAGTCA+AGG | + | chr4_2:53847849-53847868 | Msa0607130:CDS | 35.0% | |
| ACCTCAAATGTTAGGTTCAT+TGG | - | chr4_2:53847986-53848005 | None:intergenic | 35.0% | |
| TTGATCTGACCTCAAATGTT+AGG | - | chr4_2:53847994-53848013 | None:intergenic | 35.0% | |
| ! | TAACATTTGAGGTCAGATCA+AGG | + | chr4_2:53847993-53848012 | Msa0607130:CDS | 35.0% |
| ! | AACATTTGAGGTCAGATCAA+GGG | + | chr4_2:53847994-53848013 | Msa0607130:CDS | 35.0% |
| ! | AGATCAAGGGCTTACATTTT+GGG | + | chr4_2:53848007-53848026 | Msa0607130:CDS | 35.0% |
| ! | GTGCTCTTTTTACAAATGAG+AGG | - | chr4_2:53848173-53848192 | None:intergenic | 35.0% |
| TCTTATGGTTCTTCTCCTGT+AGG | + | chr4_2:53843477-53843496 | Msa0607130:CDS | 40.0% | |
| ACCCTAGGATTTCTTCTTCT+TGG | + | chr4_2:53843595-53843614 | Msa0607130:CDS | 40.0% | |
| ! | TGGTGATGATCTTGATGAAG+AGG | + | chr4_2:53843641-53843660 | Msa0607130:CDS | 40.0% |
| TGATCTTGATGAAGAGGATG+AGG | + | chr4_2:53843647-53843666 | Msa0607130:CDS | 40.0% | |
| ! | AAGGTGTTTATGATTCTGGG+AGG | + | chr4_2:53843676-53843695 | Msa0607130:CDS | 40.0% |
| GTTACCTTAAGAATGACACG+AGG | - | chr4_2:53843795-53843814 | None:intergenic | 40.0% | |
| TGAAAAATGCAGGAGGAAGA+AGG | - | chr4_2:53843819-53843838 | None:intergenic | 40.0% | |
| CTAGGTATGAAAAATGCAGG+AGG | - | chr4_2:53843826-53843845 | None:intergenic | 40.0% | |
| GAGTCACAACAAAACCAACT+AGG | - | chr4_2:53843844-53843863 | None:intergenic | 40.0% | |
| !! | TTGTTGTGACTCGGTATGTT+CGG | + | chr4_2:53843852-53843871 | Msa0607130:intron | 40.0% |
| CAGGAGATATGTCAGAATCA+CGG | + | chr4_2:53843880-53843899 | Msa0607130:intron | 40.0% | |
| !! | ACAATGTAACATCGATTCCG+TGG | - | chr4_2:53843910-53843929 | None:intergenic | 40.0% |
| ATGCCTCGTATCAAAGCTAT+TGG | + | chr4_2:53844018-53844037 | Msa0607130:intron | 40.0% | |
| AATCAACTGGTCAGAGTCAA+TGG | + | chr4_2:53844104-53844123 | Msa0607130:intron | 40.0% | |
| CTTCATCCTATCCAAAGTCT+AGG | - | chr4_2:53844258-53844277 | None:intergenic | 40.0% | |
| GAAGAACATGAATCAGGGTA+AGG | - | chr4_2:53844324-53844343 | None:intergenic | 40.0% | |
| TGTCATTGAACTCAACGGTT+AGG | + | chr4_2:53844483-53844502 | Msa0607130:CDS | 40.0% | |
| TGAACACCAAAGAAAGTTGC+AGG | - | chr4_2:53844524-53844543 | None:intergenic | 40.0% | |
| ! | TGACACCTCTTTTTCCATGT+AGG | - | chr4_2:53844863-53844882 | None:intergenic | 40.0% |
| !! | ATGGAAAAAGAGGTGTCACT+TGG | + | chr4_2:53844865-53844884 | Msa0607130:intron | 40.0% |
| !! | TGGAAAAAGAGGTGTCACTT+GGG | + | chr4_2:53844866-53844885 | Msa0607130:intron | 40.0% |
| GTGTCAATGTCATGTGACAT+TGG | - | chr4_2:53845017-53845036 | None:intergenic | 40.0% | |
| GGAAACACAGACAAATTTGC+CGG | + | chr4_2:53845219-53845238 | Msa0607130:intron | 40.0% | |
| TGGGAATGAGCAAATCCATT+TGG | + | chr4_2:53845489-53845508 | Msa0607130:intron | 40.0% | |
| GGGAATGAGCAAATCCATTT+GGG | + | chr4_2:53845490-53845509 | Msa0607130:intron | 40.0% | |
| !! | AGACCCAGCTTTTTAGCATA+TGG | - | chr4_2:53845575-53845594 | None:intergenic | 40.0% |
| AATCCCATTTCCCCATTTCT+TGG | + | chr4_2:53845701-53845720 | Msa0607130:intron | 40.0% | |
| ATCCCATTTCCCCATTTCTT+GGG | + | chr4_2:53845702-53845721 | Msa0607130:intron | 40.0% | |
| TACCCAAGAAATGGGGAAAT+GGG | - | chr4_2:53845707-53845726 | None:intergenic | 40.0% | |
| ATACCCAAGAAATGGGGAAA+TGG | - | chr4_2:53845708-53845727 | None:intergenic | 40.0% | |
| ATTTCCCCATTTCTTGGGTA+TGG | + | chr4_2:53845707-53845726 | Msa0607130:intron | 40.0% | |
| TTTCCCCATTTCTTGGGTAT+GGG | + | chr4_2:53845708-53845727 | Msa0607130:intron | 40.0% | |
| TAAGCCCATACCCAAGAAAT+GGG | - | chr4_2:53845715-53845734 | None:intergenic | 40.0% | |
| ! | TTTTAGCAATCCACACCTCA+AGG | + | chr4_2:53846426-53846445 | Msa0607130:intron | 40.0% |
| !! | TCAGCCCAAAAGTTCTGAAA+AGG | - | chr4_2:53846588-53846607 | None:intergenic | 40.0% |
| !! | CCGTAAGCTTTAACTTGATG+AGG | - | chr4_2:53847244-53847263 | None:intergenic | 40.0% |
| TAACCATAGTTTCCTCCCTT+AGG | + | chr4_2:53847541-53847560 | Msa0607130:intron | 40.0% | |
| AACCATAGTTTCCTCCCTTA+GGG | + | chr4_2:53847542-53847561 | Msa0607130:intron | 40.0% | |
| TAATGTAAACTCCCTAAGGG+AGG | - | chr4_2:53847556-53847575 | None:intergenic | 40.0% | |
| GTAATTCCAGTGAGTTGTGT+AGG | + | chr4_2:53847587-53847606 | Msa0607130:intron | 40.0% | |
| AATTCCAGTGAGTTGTGTAG+GGG | + | chr4_2:53847589-53847608 | Msa0607130:intron | 40.0% | |
| ! | TAAATGGTCGGCTTAGTAGT+AGG | + | chr4_2:53847687-53847706 | Msa0607130:intron | 40.0% |
| GCCAATGAACCTAACATTTG+AGG | + | chr4_2:53847982-53848001 | Msa0607130:CDS | 40.0% | |
| ! | CAGATCAAGGGCTTACATTT+TGG | + | chr4_2:53848006-53848025 | Msa0607130:CDS | 40.0% |
| !! | GGCTTACATTTTGGGAAGAT+TGG | + | chr4_2:53848015-53848034 | Msa0607130:CDS | 40.0% |
| ACATAGTAAAGTGGTCGACG+AGG | - | chr4_2:53843423-53843442 | None:intergenic | 45.0% | |
| GAAGAGGATGAGGATGATGA+AGG | + | chr4_2:53843657-53843676 | Msa0607130:CDS | 45.0% | |
| ! | ATGATTCTGGGAGGAATGTG+AGG | + | chr4_2:53843685-53843704 | Msa0607130:CDS | 45.0% |
| ! | CAAGCCTCGTGTCATTCTTA+AGG | + | chr4_2:53843788-53843807 | Msa0607130:CDS | 45.0% |
| TGGTCAGAGTCAATGGTGTA+TGG | + | chr4_2:53844111-53844130 | Msa0607130:intron | 45.0% | |
| GCTAGCTAGAGAGAAGAAGA+GGG | - | chr4_2:53844157-53844176 | None:intergenic | 45.0% | |
| AGCTAGCTAGAGAGAAGAAG+AGG | - | chr4_2:53844158-53844177 | None:intergenic | 45.0% | |
| ! | ACAATCTGGTAACGATGGGA+CGG | + | chr4_2:53844442-53844461 | Msa0607130:CDS | 45.0% |
| ! | TTCCAGCTCACATTAGCTTC+TGG | + | chr4_2:53844575-53844594 | Msa0607130:CDS | 45.0% |
| TAGCAGTAGGGGAAAGAGAA+AGG | - | chr4_2:53844611-53844630 | None:intergenic | 45.0% | |
| !! | AGGTGTCACTTGGGTTACAT+TGG | + | chr4_2:53844875-53844894 | Msa0607130:intron | 45.0% |
| AAACTGTTACCTTGAGGGTG+AGG | + | chr4_2:53845066-53845085 | Msa0607130:intron | 45.0% | |
| AACTGTTACCTTGAGGGTGA+GGG | + | chr4_2:53845067-53845086 | Msa0607130:intron | 45.0% | |
| ! | GAAGGGCACATGTGAATGAA+TGG | + | chr4_2:53845089-53845108 | Msa0607130:intron | 45.0% |
| GAGGGTTTGGGAATTTCCAA+CGG | + | chr4_2:53845123-53845142 | Msa0607130:intron | 45.0% | |
| ! | GTTGCCTGCTTTGAATCTGT+GGG | + | chr4_2:53845145-53845164 | Msa0607130:intron | 45.0% |
| !!! | TAACTCACGCAGAGGCATTT+TGG | - | chr4_2:53845296-53845315 | None:intergenic | 45.0% |
| CGTGAATTAACTCATGCTGC+GGG | - | chr4_2:53845322-53845341 | None:intergenic | 45.0% | |
| GCGTGAATTAACTCATGCTG+CGG | - | chr4_2:53845323-53845342 | None:intergenic | 45.0% | |
| GGGCCATATGCTAAAAAGCT+GGG | + | chr4_2:53845569-53845588 | Msa0607130:intron | 45.0% | |
| TAGGGTGATGTATAAGAGGC+AGG | - | chr4_2:53845598-53845617 | None:intergenic | 45.0% | |
| GGACCCCAACAAAGTTCAAT+AGG | + | chr4_2:53845631-53845650 | Msa0607130:intron | 45.0% | |
| AAGCCCATACCCAAGAAATG+GGG | - | chr4_2:53845714-53845733 | None:intergenic | 45.0% | |
| GTAAGCCCATACCCAAGAAA+TGG | - | chr4_2:53845716-53845735 | None:intergenic | 45.0% | |
| ACTTTACCGTACTTCTCACG+TGG | + | chr4_2:53845752-53845771 | Msa0607130:intron | 45.0% | |
| TTTGCTAGAAGCCACCATGA+AGG | + | chr4_2:53846399-53846418 | Msa0607130:intron | 45.0% | |
| GCTAAAAGACACCTTCATGG+TGG | - | chr4_2:53846413-53846432 | None:intergenic | 45.0% | |
| !! | GGAAATCACACTTTGAGGTG+TGG | - | chr4_2:53846455-53846474 | None:intergenic | 45.0% |
| GGATACCAAGTTCCACTCTA+CGG | + | chr4_2:53847905-53847924 | Msa0607130:CDS | 45.0% | |
| ! | ACTTTTCATGGCAACCGTCT+TGG | + | chr4_2:53848076-53848095 | Msa0607130:CDS | 45.0% |
| !! | TACTATATATATATATATAT+AGG | + | chr4_2:53846373-53846392 | Msa0607130:intron | 5.0% |
| !!! | AAAATTTTAAAATTTTAAAC+TGG | - | chr4_2:53846987-53847006 | None:intergenic | 5.0% |
| !! | TGGTGAACGGTTTGGTGTTG+AGG | - | chr4_2:53843400-53843419 | None:intergenic | 50.0% |
| TAGTAAAGTGGTCGACGAGG+TGG | - | chr4_2:53843420-53843439 | None:intergenic | 50.0% | |
| GACTCGCGAGAGTGATGAAT+AGG | - | chr4_2:53843543-53843562 | None:intergenic | 50.0% | |
| CGAAGCAGAGTAACGAGAAG+TGG | - | chr4_2:53843568-53843587 | None:intergenic | 50.0% | |
| CTGCTTCGCTGAAAAACCCT+AGG | + | chr4_2:53843580-53843599 | Msa0607130:CDS | 50.0% | |
| CTCGGTATGTTCGGTATCAC+AGG | + | chr4_2:53843861-53843880 | Msa0607130:intron | 50.0% | |
| GTCAGAATCACGGTGATCCA+CGG | + | chr4_2:53843890-53843909 | Msa0607130:intron | 50.0% | |
| ! | CAATCTGGTAACGATGGGAC+GGG | + | chr4_2:53844443-53844462 | Msa0607130:CDS | 50.0% |
| GACCAGAAGCTAATGTGAGC+TGG | - | chr4_2:53844580-53844599 | None:intergenic | 50.0% | |
| ! | GCTCACATTAGCTTCTGGTC+AGG | + | chr4_2:53844580-53844599 | Msa0607130:CDS | 50.0% |
| CAGTAGGGGAAAGAGAAAGG+TGG | - | chr4_2:53844608-53844627 | None:intergenic | 50.0% | |
| TTACCTTGAGGGTGAGGGAA+GGG | + | chr4_2:53845072-53845091 | Msa0607130:intron | 50.0% | |
| GATTCAAAGCAGGCAACCGT+TGG | - | chr4_2:53845142-53845161 | None:intergenic | 50.0% | |
| ! | GGTTGCCTGCTTTGAATCTG+TGG | + | chr4_2:53845144-53845163 | Msa0607130:intron | 50.0% |
| ! | CCTGCTTTGAATCTGTGGGT+GGG | + | chr4_2:53845149-53845168 | Msa0607130:intron | 50.0% |
| ! | CTGCTTTGAATCTGTGGGTG+GGG | + | chr4_2:53845150-53845169 | Msa0607130:intron | 50.0% |
| AGCGTGAGTTAACTCACGCA+GGG | + | chr4_2:53845447-53845466 | Msa0607130:intron | 50.0% | |
| GGGGCCATATGCTAAAAAGC+TGG | + | chr4_2:53845568-53845587 | Msa0607130:intron | 50.0% | |
| ACATCACCCTACTTATGGGC+AGG | + | chr4_2:53845607-53845626 | Msa0607130:intron | 50.0% | |
| CATCACCCTACTTATGGGCA+GGG | + | chr4_2:53845608-53845627 | Msa0607130:intron | 50.0% | |
| ATCACCCTACTTATGGGCAG+GGG | + | chr4_2:53845609-53845628 | Msa0607130:intron | 50.0% | |
| CTGAAGCCACGTGAGAAGTA+CGG | - | chr4_2:53845761-53845780 | None:intergenic | 50.0% | |
| TACTTCTCACGTGGCTTCAG+AGG | + | chr4_2:53845761-53845780 | Msa0607130:intron | 50.0% | |
| ! | TTTGAGGTGTGGACACCTTG+AGG | - | chr4_2:53846444-53846463 | None:intergenic | 50.0% |
| CTCCCTAAGGGAGGAAACTA+TGG | - | chr4_2:53847547-53847566 | None:intergenic | 50.0% | |
| ATCAGTCAAGGAAGAGCCAG+AGG | + | chr4_2:53847861-53847880 | Msa0607130:CDS | 50.0% | |
| ! | AAGTTAGCTGTGGTGGTGCA+TGG | + | chr4_2:53847884-53847903 | Msa0607130:CDS | 50.0% |
| TACCAAGTTCCACTCTACGG+TGG | + | chr4_2:53847908-53847927 | Msa0607130:CDS | 50.0% | |
| ACCAAGTTCCACTCTACGGT+GGG | + | chr4_2:53847909-53847928 | Msa0607130:CDS | 50.0% | |
| TGGTGAGGTGGTGAACCTAC+AGG | - | chr4_2:53843495-53843514 | None:intergenic | 55.0% | |
| GTTACCTTGAGGGTGAGGGA+AGG | + | chr4_2:53845071-53845090 | Msa0607130:intron | 55.0% | |
| ! | GCCTGCTTTGAATCTGTGGG+TGG | + | chr4_2:53845148-53845167 | Msa0607130:intron | 55.0% |
| CCCACCCACAGATTCAAAGC+AGG | - | chr4_2:53845152-53845171 | None:intergenic | 55.0% | |
| GAGCGTGAGTTAACTCACGC+AGG | + | chr4_2:53845446-53845465 | Msa0607130:intron | 55.0% | |
| TCACCCTACTTATGGGCAGG+GGG | + | chr4_2:53845610-53845629 | Msa0607130:intron | 55.0% | |
| CCAACCCCTACACAACTCAC+TGG | - | chr4_2:53847596-53847615 | None:intergenic | 55.0% | |
| CCAGTGAGTTGTGTAGGGGT+TGG | + | chr4_2:53847593-53847612 | Msa0607130:intron | 55.0% | |
| GAGCCAGAGGAAGTTAGCTG+TGG | + | chr4_2:53847874-53847893 | Msa0607130:CDS | 55.0% | |
| CCACCACAGCTAACTTCCTC+TGG | - | chr4_2:53847880-53847899 | None:intergenic | 55.0% | |
| CCAGAGGAAGTTAGCTGTGG+TGG | + | chr4_2:53847877-53847896 | Msa0607130:CDS | 55.0% | |
| CCAAGTTCCACTCTACGGTG+GGG | + | chr4_2:53847910-53847929 | Msa0607130:CDS | 55.0% | |
| CGACGAGGTGGTGAACGGTT+TGG | - | chr4_2:53843408-53843427 | None:intergenic | 60.0% | |
| GTGGTCGACGAGGTGGTGAA+CGG | - | chr4_2:53843413-53843432 | None:intergenic | 60.0% | |
| GCGGGAGTTAACTCACGCAG+AGG | - | chr4_2:53845304-53845323 | None:intergenic | 60.0% | |
| GGTCCCCCTGCCCATAAGTA+GGG | - | chr4_2:53845616-53845635 | None:intergenic | 60.0% | |
| GGTGTGGACACCTTGAGGTG+TGG | - | chr4_2:53846439-53846458 | None:intergenic | 60.0% | |
| CCCCACCGTAGAGTGGAACT+TGG | - | chr4_2:53847913-53847932 | None:intergenic | 60.0% | |
| TCCACTCTACGGTGGGGTGT+CGG | + | chr4_2:53847916-53847935 | Msa0607130:CDS | 60.0% | |
| !! | TACGGTGGGGTGTCGGTTCT+TGG | + | chr4_2:53847923-53847942 | Msa0607130:CDS | 60.0% |
| GTGCCCTTCCCTCACCCTCA+AGG | - | chr4_2:53845078-53845097 | None:intergenic | 65.0% | |
| GGGTCCCCCTGCCCATAAGT+AGG | - | chr4_2:53845617-53845636 | None:intergenic | 65.0% | |
| ACCGACACCCCACCGTAGAG+TGG | - | chr4_2:53847920-53847939 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 53843284 | 53848223 | 53843284 | ID=Msa0607130;Name=Msa0607130 |
| chr4_2 | mRNA | 53843284 | 53848223 | 53843284 | ID=Msa0607130-mRNA-1;Parent=Msa0607130;Name=Msa0607130-mRNA-1;_AED=0.04;_eAED=0.04;_QI=46|1|1|1|1|1|3|85|318 |
| chr4_2 | exon | 53843284 | 53843809 | 53843284 | ID=Msa0607130-mRNA-1:exon:13376;Parent=Msa0607130-mRNA-1 |
| chr4_2 | exon | 53844416 | 53844601 | 53844416 | ID=Msa0607130-mRNA-1:exon:13377;Parent=Msa0607130-mRNA-1 |
| chr4_2 | exon | 53847848 | 53848223 | 53847848 | ID=Msa0607130-mRNA-1:exon:13378;Parent=Msa0607130-mRNA-1 |
| chr4_2 | five_prime_UTR | 53843284 | 53843329 | 53843284 | ID=Msa0607130-mRNA-1:five_prime_utr;Parent=Msa0607130-mRNA-1 |
| chr4_2 | CDS | 53843330 | 53843809 | 53843330 | ID=Msa0607130-mRNA-1:cds;Parent=Msa0607130-mRNA-1 |
| chr4_2 | CDS | 53844416 | 53844601 | 53844416 | ID=Msa0607130-mRNA-1:cds;Parent=Msa0607130-mRNA-1 |
| chr4_2 | CDS | 53847848 | 53848138 | 53847848 | ID=Msa0607130-mRNA-1:cds;Parent=Msa0607130-mRNA-1 |
| chr4_2 | three_prime_UTR | 53848139 | 53848223 | 53848139 | ID=Msa0607130-mRNA-1:three_prime_utr;Parent=Msa0607130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
